David Chu
commited on
fix: remove unused module
Browse files- app/tools/pubmed.py +0 -24
app/tools/pubmed.py
DELETED
@@ -1,24 +0,0 @@
|
|
1 |
-
import httpx
|
2 |
-
|
3 |
-
|
4 |
-
def search(query: str, top_k: int = 10, db: str = "pubmed"):
|
5 |
-
resp = httpx.get(
|
6 |
-
"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi",
|
7 |
-
params={
|
8 |
-
"term": query,
|
9 |
-
"db": db,
|
10 |
-
"retmax": top_k,
|
11 |
-
"retmode": "json",
|
12 |
-
},
|
13 |
-
)
|
14 |
-
id_list = resp.json()["esearchresult"]["idlist"]
|
15 |
-
|
16 |
-
resp = httpx.get(
|
17 |
-
"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi",
|
18 |
-
params={
|
19 |
-
"db": db,
|
20 |
-
"id": ",".join(id_list),
|
21 |
-
"retmode": "json",
|
22 |
-
},
|
23 |
-
)
|
24 |
-
return resp.json()
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|