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Runtime error
Marc-Antoine Rondeau
commited on
Commit
·
2f25f03
1
Parent(s):
1f22b14
Trying to refactor the parsing
Browse files- buster/docparser.py +8 -7
- buster/parser.py +97 -121
buster/docparser.py
CHANGED
@@ -1,5 +1,6 @@
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import glob
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import os
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import numpy as np
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import pandas as pd
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@@ -42,7 +43,7 @@ supported_docs = {
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def get_all_documents(
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root_dir: str, base_url: str,
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) -> pd.DataFrame:
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"""Parse all HTML files in `root_dir`, and extract all sections.
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source = f.read()
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soup = BeautifulSoup(source, "html.parser")
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sections_file, urls_file, names_file =
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documents_df = pd.DataFrame.from_dict({"title": names, "url": urls, "content": sections})
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import glob
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import os
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from typing import Type
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import numpy as np
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import pandas as pd
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def get_all_documents(
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root_dir: str, base_url: str, parser_cls: Type[Parser], min_section_length: int = 100, max_section_length: int = 2000
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) -> pd.DataFrame:
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"""Parse all HTML files in `root_dir`, and extract all sections.
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source = f.read()
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soup = BeautifulSoup(source, "html.parser")
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parser = parser_cls(soup, base_url, file, min_section_length, max_section_length)
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# sections_file, urls_file, names_file =
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for section in parser.parse():
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sections.append(section.text)
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urls.append(section.url)
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names.append(section.name)
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documents_df = pd.DataFrame.from_dict({"title": names, "url": urls, "content": sections})
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buster/parser.py
CHANGED
@@ -1,151 +1,127 @@
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import math
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import os
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import bs4
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import pandas as pd
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from bs4 import BeautifulSoup
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self
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):
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...
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...
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def
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class SphinxParser(Parser):
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def parse(self) -> tuple[list[str], list[str], list[str]]:
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found = self.find_sections()
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section_found = found[i]
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# If sections has subsections, keep only the part before the first subsection
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if len(section_href) > 1 and
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section =
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else:
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section =
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section = section.strip()
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url = section_found["href"].strip().replace("\n", "")
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name = section_found.parent.text.strip()[:-1].replace("\n", "")
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url = self.build_url(url)
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# If text is too long, split into chunks of equal sizes
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if len(section) > self.max_section_length:
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n_chunks = math.ceil(len(section) / float(self.max_section_length))
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separator_index = math.floor(len(section) / n_chunks)
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section_chunks = [section[separator_index * i : separator_index * (i + 1)] for i in range(n_chunks)]
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url_chunks = [url] * n_chunks
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name_chunks = [name] * n_chunks
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sections.extend(section_chunks)
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urls.extend(url_chunks)
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names.extend(name_chunks)
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# If text is not too short, add in 1 chunk
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elif len(section) > self.min_section_length:
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sections.append(section)
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urls.append(url)
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names.append(name)
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return sections, urls, names
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def find_sections(self) -> bs4.element.ResultSet:
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return self.soup.find_all("a", href=True, class_="headerlink")
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def build_url(self, suffix: str) -> str:
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return self.base_url + self.filename + suffix
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class HuggingfaceParser(Parser):
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def parse(self) -> tuple[list[str], list[str], list[str]]:
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found = self.find_sections()
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section = parse_section(section_nodes)
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# Remove special characters, plus newlines in some url and section names.
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section = section.strip()
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url = section_href["href"].strip().replace("\n", "")
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name = found[i].text.strip().replace("\n", "")
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url = self.build_url(url)
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# If text is too long, split into chunks of equal sizes
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if len(section) > self.max_section_length:
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n_chunks = math.ceil(len(section) / float(self.max_section_length))
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separator_index = math.floor(len(section) / n_chunks)
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section_chunks = [section[separator_index * i : separator_index * (i + 1)] for i in range(n_chunks)]
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url_chunks = [url] * n_chunks
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name_chunks = [name] * n_chunks
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sections.extend(section_chunks)
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urls.extend(url_chunks)
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names.extend(name_chunks)
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# If text is not too short, add in 1 chunk
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elif len(section) > self.min_section_length:
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sections.append(section)
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urls.append(url)
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names.append(name)
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return sections, urls, names
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def find_sections(self) -> bs4.element.ResultSet:
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return self.soup.find_all(["h1", "h2", "h3"], class_="relative group")
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def build_url(self, suffix: str) -> str:
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# The splitext is to remove the .html extension
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from abc import ABC, abstractmethod
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from dataclasses import InitVar, dataclass, field
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from itertools import takewhile, zip_longest
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import math
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import os
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from typing import Generator
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import bs4
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import pandas as pd
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from bs4 import BeautifulSoup
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@dataclass
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class Section:
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url: str
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name: str
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nodes: InitVar[list[bs4.element.NavigableString]]
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text: str = field(init=False)
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def __post_init__(self, nodes: list[bs4.element.NavigableString]):
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section = []
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for node in nodes:
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if node.name == "table":
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node_text = pd.read_html(node.prettify())[0].to_markdown(index=False, tablefmt="github")
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elif node.name == "script":
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continue
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else:
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node_text = node.text
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section.append(node_text)
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self.text = "".join(section).strip()
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def __len__(self) -> int:
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return len(self.text)
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@classmethod
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def from_text(cls, text: str, url: str, name: str) -> 'Section':
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"""Alternate constructor, without parsing."""
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section = cls.__new__(cls) # Allocate memory, does not call __init__
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# Does the init here.
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section.text = text
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section.url = url
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section.name = name
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return section
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def get_chunks(self, min_length: int, max_length: int) -> Generator['Section', None, None]:
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"""Split a section into chunks."""
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if len(self) > max_length:
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# Get the number of chunk, by dividing and rounding up.
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# Then, split the section into equal lenght chunks.
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# This could results in chunks below the minimum length,
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# and will truncate the end of the section.
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n_chunks = (len(self) + max_length - 1) // max_length
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length = len(self) // n_chunks
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for chunk in range(n_chunks):
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start = chunk * length
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yield Section.from_text(
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self.text[start: start + length],
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self.url, self.name)
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elif len(self) > min_length:
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yield self
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return
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@dataclass
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class Parser(ABC):
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soup: BeautifulSoup
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base_url: str
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filename: str
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min_section_length: int = 100
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max_section_length: int = 2000
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@abstractmethod
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def build_url(self, suffix: str) -> str:
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...
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@abstractmethod
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def find_sections(self) -> Generator[Section, None, None]:
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def parse(self) -> list[Section]:
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"""Parse the documents into sections, respecting the lenght constraints."""
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sections = []
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for section in self.find_sections():
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sections.extend(section.get_chunks(self.min_section_length, self.max_section_length))
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return sections
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class SphinxParser(Parser):
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def find_sections(self) -> Generator[Section, None, None]:
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for section in self.soup.find_all("a", href=True, class_="headerlink"):
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container = section.parent.parent
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section_href = container.find_all("a", href=True, class_="headerlink")
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url = self.build_url(section["href"].strip().replace("\n", ""))
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name = section.parent.text
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# If sections has subsections, keep only the part before the first subsection
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if len(section_href) > 1 and container.section is not None:
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siblings = list(container.section.previous_siblings)[::-1]
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section = Section(url, name, siblings)
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else:
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section = Section(url, name, container.children)
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yield section
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return
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def build_url(self, suffix: str) -> str:
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return self.base_url + self.filename + suffix
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class HuggingfaceParser(Parser):
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def find_sections(self) -> Generator[Section, None, None]:
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sections = self.soup.find_all(["h1", "h2", "h3"], class_="relative group")
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for section, next_section in zip_longest(sections, sections[1:]):
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href = section.find("a", href=True, class_="header-link")
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nodes = list(takewhile(lambda sibling: sibling != next_section, section.find_next_siblings()))
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url = self.build_url(href["href"].strip().replace("\n", ""))
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name = section.text.strip().replace("\n", "")
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yield Section(url, name, nodes)
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return
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def build_url(self, suffix: str) -> str:
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# The splitext is to remove the .html extension
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