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Update requirements.txt
Browse files- requirements.txt +12 -5
requirements.txt
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@@ -16,19 +16,26 @@ hydra-core
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# hydra-optuna-sweeper
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# hydra-submitit-launcher
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pandas
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# pre-commit
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# rich
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# pytest
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# tensorboard
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# model-specific requirements
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# subword-nmt # MONN
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tape_proteins # TransformerCPI2
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fair-esm # CoaDTI-pro
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# apex # recommended by TAPE-BERT
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#
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-
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-
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mhfp
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# tmap
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# hydra-optuna-sweeper
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# hydra-submitit-launcher
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pandas
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swifter
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# pre-commit
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# rich
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# pytest
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# tensorboard
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# feature extraction
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biopython
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rdkit
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networkx>=3.2.0
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mhfp
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# tmap
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# model-specific requirements
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# subword-nmt # MONN
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tape_proteins # TransformerCPI2
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gensim # TransformerCPI
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fair-esm # CoaDTI-pro
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# apex # recommended by TAPE-BERT
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# data visualization utilities
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bokeh
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panel
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