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Browse files- configs/preset/bacpi.yaml +0 -37
configs/preset/bacpi.yaml
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# @package _global_
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model:
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predictor:
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_target_: deepscreen.models.predictors.bacpi.BACPI
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n_atom: 20480
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n_amino: 8448
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comp_dim: 80
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prot_dim: 80
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latent_dim: 80
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gat_dim: 50
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num_head: 3
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dropout: 0.1
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alpha: 0.1
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window: 5
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layer_cnn: 3
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optimizer:
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lr: 5e-4
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data:
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batch_size: 16
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collator:
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automatic_padding: True
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drug_featurizer:
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_target_: deepscreen.models.predictors.bacpi.drug_featurizer
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_partial_: true
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radius: 2
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protein_featurizer:
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_target_: deepscreen.models.predictors.bacpi.split_sequence
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_partial_: true
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ngram: 3
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# collator:
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# _target_: deepscreen.models.predictors.transformer_cpi_2.pack
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# _partial_: true
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