Upgrade ReactFlow to 12.6.0. Fix warnings.

lynxkite-app/web/package-lock.json

@@ -17,7 +17,7 @@
         "@syncedstore/core": "^0.6.0",
         "@syncedstore/react": "^0.6.0",
         "@types/node": "^22.10.1",
-        "@xyflow/react": "^12.3.5",
+        "@xyflow/react": "^12.6.0",
         "3dmol": "^2.4.2",
         "axios": "^1.8.2",
         "daisyui": "^4.12.20",
@@ -2372,12 +2372,12 @@
       }
     },
     "node_modules/@xyflow/react": {
-      "version": "12.3.5",
-      "resolved": "https://registry.npmjs.org/@xyflow/react/-/react-12.3.5.tgz",
-      "integrity": "sha512-wAYqpicdrVo1rxCu0X3M9s3YIF45Agqfabw0IBryTGqjWvr2NyfciI8gIP4MB+NKpWWN5kxZ9tiZ9u8lwC7iAg==",
+      "version": "12.6.0",
+      "resolved": "https://registry.npmjs.org/@xyflow/react/-/react-12.6.0.tgz",
+      "integrity": "sha512-YzsSK4SlpC6e9Ki1g6O9B1UH7xvz/bzWF+tJ+vWDD8Am5xJmFn0jYnCEuqvzvH8dRKb1NFBmyuqEGqWN39xXsA==",
       "license": "MIT",
       "dependencies": {
-        "@xyflow/system": "0.0.46",
+        "@xyflow/system": "0.0.57",
         "classcat": "^5.0.3",
         "zustand": "^4.4.0"
       },
@@ -2387,9 +2387,9 @@
       }
     },
     "node_modules/@xyflow/system": {
-      "version": "0.0.46",
-      "resolved": "https://registry.npmjs.org/@xyflow/system/-/system-0.0.46.tgz",
-      "integrity": "sha512-bmFXvboVdiydIFZmDCjrbBCYgB0d5pYdkcZPWbAxGmhMRUZ+kW3CksYgYxWabrw51rwpWitLEadvLrivG0mVfA==",
+      "version": "0.0.57",
+      "resolved": "https://registry.npmjs.org/@xyflow/system/-/system-0.0.57.tgz",
+      "integrity": "sha512-1YpBo0WgmZLR5wQw9Jvk3Tu0gISi/oYc4uSimrDuAsA/G2rGleulLrKkM59uuT/QU5m6DYC2VdBDAzjSNMGuBA==",
       "license": "MIT",
       "dependencies": {
         "@types/d3-drag": "^3.0.7",

lynxkite-app/web/package.json

@@ -20,7 +20,7 @@
     "@syncedstore/core": "^0.6.0",
     "@syncedstore/react": "^0.6.0",
     "@types/node": "^22.10.1",
-    "@xyflow/react": "^12.3.5",
+    "@xyflow/react": "^12.6.0",
     "3dmol": "^2.4.2",
     "axios": "^1.8.2",
     "daisyui": "^4.12.20",

lynxkite-app/web/src/workspace/LynxKiteEdge.tsx

@@ -17,9 +17,11 @@ export default function LynxKiteEdge(props: any) {
   return (
     <>
       <BaseEdge
-        id={props.id}
         path={path}
-        {...props}
+        labelX={props.labelX}
+        labelY={props.labelY}
+        markerStart={props.markerStart}
+        markerEnd={props.markerEnd}
         style={{
           strokeWidth: 2,
           stroke: "black",

lynxkite-core/pyproject.toml

@@ -5,7 +5,6 @@ description = "A lightweight dependency for authoring LynxKite operations and ex
 readme = "README.md"
 requires-python = ">=3.11"
 dependencies = [
-    "griffe>=1.7.3",
 ]
 
 [project.optional-dependencies]