Merge branch 'main' into darabos-model-designer

Dockerfile

@@ -5,12 +5,16 @@ USER node
 ENV HOME=/home/node PATH=/home/node/.local/bin:$PATH
 WORKDIR $HOME/app
 COPY --chown=node . $HOME/app
-RUN uv venv && uv pip install \
+ENV GIT_SSH_COMMAND="ssh -i /run/secrets/LYNXSCRIBE_DEPLOY_KEY -o StrictHostKeyChecking=no"
+RUN --mount=type=secret,id=LYNXSCRIBE_DEPLOY_KEY,mode=0444,required=true \
+  uv venv && uv pip install \
   -e lynxkite-core \
   -e lynxkite-app \
   -e lynxkite-graph-analytics \
   -e lynxkite-bio \
-  -e lynxkite-pillow-example
+  -e lynxkite-lynxscribe \
+  -e lynxkite-pillow-example \
+  chromadb openai
 WORKDIR $HOME/app/examples
 ENV PORT=7860
 CMD ["uv", "run", "lynxkite"]

lynxkite-graph-analytics/src/lynxkite_graph_analytics/lynxkite_ops.py

@@ -15,7 +15,7 @@ import polars as pl
 import json
 
 
-mem = joblib.Memory("joblib-cache")
+mem = joblib.Memory(".joblib-cache")
 op = ops.op_registration(core.ENV)
 
 
@@ -87,8 +87,8 @@ def import_parquet(*, filename: str):
     return pd.read_parquet(filename)
 
 
-@mem.cache
 @op("Import CSV")
+@mem.cache
 def import_csv(
     *, filename: str, columns: str = "<from file>", separator: str = "<auto>"
 ):
@@ -102,8 +102,8 @@ def import_csv(
     )
 
 
-@mem.cache
 @op("Import GraphML")
+@mem.cache
 def import_graphml(*, filename: str):
     """Imports a GraphML file."""
     files = fsspec.open_files(filename, compression="infer")
@@ -114,8 +114,8 @@ def import_graphml(*, filename: str):
     raise ValueError(f"No .graphml file found at {filename}")
 
 
-@mem.cache
 @op("Graph from OSM")
+@mem.cache
 def import_osm(*, location: str):
     import osmnx as ox