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mzhu22 commited on Jul 23

Commit

b5ccc63

1 Parent(s): 6c74986

use contours in videos

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This view is limited to 50 files because it contains too many changes. See raw diff

Files changed (50) hide show

app-download-image.py +3 -3
assets/A_001_frames.mp4 +2 -2
assets/A_003_frames.mp4 +2 -2
assets/A_004_frames.mp4 +2 -2
assets/A_005_frames.mp4 +2 -2
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assets/A_011_frames.mp4 +2 -2
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assets/A_016_frames.mp4 +2 -2
assets/A_019_frames.mp4 +2 -2
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assets/A_021_frames.mp4 +2 -2
assets/A_022_frames.mp4 +2 -2
assets/A_023_frames.mp4 +2 -2
assets/A_024_frames.mp4 +2 -2
assets/A_025_frames.mp4 +2 -2
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assets/B_024_frames.mp4 +2 -2
assets/B_025_frames.mp4 +2 -2
assets/B_026_frames.mp4 +2 -2
assets/C_001_frames.mp4 +2 -2
assets/C_004_frames.mp4 +2 -2
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assets/C_006_frames.mp4 +2 -2
assets/C_008_frames.mp4 +2 -2
assets/C_009_frames.mp4 +2 -2
assets/C_010_frames.mp4 +2 -2
assets/C_011_frames.mp4 +2 -2
assets/C_012_frames.mp4 +2 -2

app-download-image.py CHANGED Viewed

@@ -6,6 +6,7 @@ import gradio as gr
 import numpy as np
 import SimpleITK
 from huggingface_hub import hf_hub_download, list_repo_files
 IMAGES_REPO = "LMUK-RADONC-PHYS-RES/TrackRAD2025"
 DATASET_REPO_TYPE = "dataset"
@@ -66,7 +67,7 @@ def download_image_files(image_file: str) -> dict[str, str]:
 def overlay_labels_on_frames(
-    frames_array, labels_array, overlay_color="green", alpha=0.2
 ):
     """
     Overlay binary labels on grayscale frames with a bright color.
@@ -99,7 +100,6 @@ def overlay_labels_on_frames(
     # Define color mapping
     color_map = {
-        "red": (1.0, 0.0, 0.0),
         "green": (0.0, 1.0, 0.0),
         "blue": (0.0, 0.0, 1.0),
         "yellow": (1.0, 1.0, 0.0),
@@ -118,7 +118,7 @@ def overlay_labels_on_frames(
     overlaid_frames = rgb_frames.copy()
     # Apply overlay where labels are True (assuming binary labels are 0/1 or False/True)
-    mask = labels_array.astype(bool)
     # Blend the colors using alpha blending
     overlaid_frames[mask, 0] = (1 - alpha) * rgb_frames[mask, 0] + alpha * r

 import numpy as np
 import SimpleITK
 from huggingface_hub import hf_hub_download, list_repo_files
+from scipy import ndimage
 IMAGES_REPO = "LMUK-RADONC-PHYS-RES/TrackRAD2025"
 DATASET_REPO_TYPE = "dataset"
 def overlay_labels_on_frames(
+    frames_array, labels_array, overlay_color="cyan", alpha=1.0
 ):
     """
     Overlay binary labels on grayscale frames with a bright color.
     # Define color mapping
     color_map = {
         "green": (0.0, 1.0, 0.0),
         "blue": (0.0, 0.0, 1.0),
         "yellow": (1.0, 1.0, 0.0),
     overlaid_frames = rgb_frames.copy()
     # Apply overlay where labels are True (assuming binary labels are 0/1 or False/True)
+    mask = (ndimage.binary_erosion(labels_array) ^ labels_array).astype(bool)
     # Blend the colors using alpha blending
     overlaid_frames[mask, 0] = (1 - alpha) * rgb_frames[mask, 0] + alpha * r

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