Upload 3 files

.gitattributes

@@ -1,35 +1,35 @@
-*.7z filter=lfs diff=lfs merge=lfs -text
-*.arrow filter=lfs diff=lfs merge=lfs -text
-*.bin filter=lfs diff=lfs merge=lfs -text
-*.bz2 filter=lfs diff=lfs merge=lfs -text
-*.ckpt filter=lfs diff=lfs merge=lfs -text
-*.ftz filter=lfs diff=lfs merge=lfs -text
-*.gz filter=lfs diff=lfs merge=lfs -text
-*.h5 filter=lfs diff=lfs merge=lfs -text
-*.joblib filter=lfs diff=lfs merge=lfs -text
-*.lfs.* filter=lfs diff=lfs merge=lfs -text
-*.mlmodel filter=lfs diff=lfs merge=lfs -text
-*.model filter=lfs diff=lfs merge=lfs -text
-*.msgpack filter=lfs diff=lfs merge=lfs -text
-*.npy filter=lfs diff=lfs merge=lfs -text
-*.npz filter=lfs diff=lfs merge=lfs -text
-*.onnx filter=lfs diff=lfs merge=lfs -text
-*.ot filter=lfs diff=lfs merge=lfs -text
-*.parquet filter=lfs diff=lfs merge=lfs -text
-*.pb filter=lfs diff=lfs merge=lfs -text
-*.pickle filter=lfs diff=lfs merge=lfs -text
-*.pkl filter=lfs diff=lfs merge=lfs -text
-*.pt filter=lfs diff=lfs merge=lfs -text
-*.pth filter=lfs diff=lfs merge=lfs -text
-*.rar filter=lfs diff=lfs merge=lfs -text
-*.safetensors filter=lfs diff=lfs merge=lfs -text
-saved_model/**/* filter=lfs diff=lfs merge=lfs -text
-*.tar.* filter=lfs diff=lfs merge=lfs -text
-*.tar filter=lfs diff=lfs merge=lfs -text
-*.tflite filter=lfs diff=lfs merge=lfs -text
-*.tgz filter=lfs diff=lfs merge=lfs -text
-*.wasm filter=lfs diff=lfs merge=lfs -text
-*.xz filter=lfs diff=lfs merge=lfs -text
-*.zip filter=lfs diff=lfs merge=lfs -text
-*.zst filter=lfs diff=lfs merge=lfs -text
-*tfevents* filter=lfs diff=lfs merge=lfs -text
+*.7z filter=lfs diff=lfs merge=lfs -text
+*.arrow filter=lfs diff=lfs merge=lfs -text
+*.bin filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.ckpt filter=lfs diff=lfs merge=lfs -text
+*.ftz filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.h5 filter=lfs diff=lfs merge=lfs -text
+*.joblib filter=lfs diff=lfs merge=lfs -text
+*.lfs.* filter=lfs diff=lfs merge=lfs -text
+*.mlmodel filter=lfs diff=lfs merge=lfs -text
+*.model filter=lfs diff=lfs merge=lfs -text
+*.msgpack filter=lfs diff=lfs merge=lfs -text
+*.npy filter=lfs diff=lfs merge=lfs -text
+*.npz filter=lfs diff=lfs merge=lfs -text
+*.onnx filter=lfs diff=lfs merge=lfs -text
+*.ot filter=lfs diff=lfs merge=lfs -text
+*.parquet filter=lfs diff=lfs merge=lfs -text
+*.pb filter=lfs diff=lfs merge=lfs -text
+*.pickle filter=lfs diff=lfs merge=lfs -text
+*.pkl filter=lfs diff=lfs merge=lfs -text
+*.pt filter=lfs diff=lfs merge=lfs -text
+*.pth filter=lfs diff=lfs merge=lfs -text
+*.rar filter=lfs diff=lfs merge=lfs -text
+*.safetensors filter=lfs diff=lfs merge=lfs -text
+saved_model/**/* filter=lfs diff=lfs merge=lfs -text
+*.tar.* filter=lfs diff=lfs merge=lfs -text
+*.tar filter=lfs diff=lfs merge=lfs -text
+*.tflite filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.wasm filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text
+*tfevents* filter=lfs diff=lfs merge=lfs -text

1.0.0

@@ -0,0 +1,16 @@
+Requirement already satisfied: openai in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (1.60.1)
+Requirement already satisfied: anyio<5,>=3.5.0 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (4.8.0)
+Requirement already satisfied: distro<2,>=1.7.0 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (1.9.0)
+Requirement already satisfied: httpx<1,>=0.23.0 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (0.27.2)
+Requirement already satisfied: jiter<1,>=0.4.0 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (0.8.2)
+Requirement already satisfied: pydantic<3,>=1.9.0 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (2.10.6)
+Requirement already satisfied: sniffio in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (1.3.1)
+Requirement already satisfied: tqdm>4 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (4.67.1)
+Requirement already satisfied: typing-extensions<5,>=4.11 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from openai) (4.12.2)
+Requirement already satisfied: idna>=2.8 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from anyio<5,>=3.5.0->openai) (3.10)
+Requirement already satisfied: certifi in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from httpx<1,>=0.23.0->openai) (2024.12.14)
+Requirement already satisfied: httpcore==1.* in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from httpx<1,>=0.23.0->openai) (1.0.7)
+Requirement already satisfied: h11<0.15,>=0.13 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from httpcore==1.*->httpx<1,>=0.23.0->openai) (0.14.0)
+Requirement already satisfied: annotated-types>=0.6.0 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from pydantic<3,>=1.9.0->openai) (0.7.0)
+Requirement already satisfied: pydantic-core==2.27.2 in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from pydantic<3,>=1.9.0->openai) (2.27.2)
+Requirement already satisfied: colorama in c:\users\adminidiakhoa\appdata\local\programs\python\python312\lib\site-packages (from tqdm>4->openai) (0.4.6)

app.py

@@ -1,1165 +1,1165 @@
-import os
-import json
-import base64
-import io
-import ast
-import logging
-from abc import ABC, abstractmethod
-from typing import Dict, List, Optional, Any
-
-import numpy as np
-import pandas as pd
-import matplotlib.pyplot as plt
-import seaborn as sns
-import streamlit as st
-import spacy
-
-from scipy.stats import ttest_ind, f_oneway
-from sklearn.model_selection import train_test_split
-from sklearn.linear_model import LogisticRegression
-from sklearn.metrics import accuracy_score
-
-from statsmodels.tsa.seasonal import seasonal_decompose
-from statsmodels.tsa.stattools import adfuller
-
-from pydantic import BaseModel, Field
-from Bio import Entrez  # Ensure BioPython is installed
-
-from dotenv import load_dotenv
-import requests
-import openai  # Updated for OpenAI SDK v1.0.0+
-from openai.error import APIError, RateLimitError, InvalidRequestError
-
-# ---------------------- Load Environment Variables ---------------------------
-load_dotenv()
-
-# ---------------------- Logging Configuration ---------------------------
-logging.basicConfig(
-    filename='app.log',
-    filemode='a',
-    format='%(asctime)s - %(levelname)s - %(message)s',
-    level=logging.INFO
-)
-logger = logging.getLogger()
-
-# ---------------------- Streamlit Page Configuration ---------------------------
-st.set_page_config(page_title="AI Clinical Intelligence Hub", layout="wide")
-
-# ---------------------- Initialize OpenAI SDK ---------------------------
-OPENAI_API_KEY = os.getenv("OPENAI_API_KEY")
-PUB_EMAIL = os.getenv("PUB_EMAIL", "")
-
-if not OPENAI_API_KEY:
-    st.error("OpenAI API key must be set as an environment variable (OPENAI_API_KEY).")
-    st.stop()
-
-# Set the OpenAI API key
-openai.api_key = OPENAI_API_KEY
-
-# ---------------------- Load spaCy Model ---------------------------
-try:
-    nlp = spacy.load("en_core_web_sm")
-except OSError:
-    # Avoid using Streamlit commands before set_page_config()
-    import subprocess
-    import sys
-    subprocess.run([sys.executable, "-m", "spacy", "download", "en_core_web_sm"])
-    nlp = spacy.load("en_core_web_sm")
-
-# ---------------------- Base Classes and Schemas ---------------------------
-
-class ResearchInput(BaseModel):
-    """Base schema for research tool inputs."""
-    data_key: str = Field(..., description="Session state key containing DataFrame")
-    columns: Optional[List[str]] = Field(None, description="List of columns to analyze")
-
-class TemporalAnalysisInput(ResearchInput):
-    """Schema for temporal analysis."""
-    time_col: str = Field(..., description="Name of timestamp column")
-    value_col: str = Field(..., description="Name of value column to analyze")
-
-class HypothesisInput(ResearchInput):
-    """Schema for hypothesis testing."""
-    group_col: str = Field(..., description="Categorical column defining groups")
-    value_col: str = Field(..., description="Numerical column to compare")
-
-class ModelTrainingInput(ResearchInput):
-    """Schema for model training."""
-    target_col: str = Field(..., description="Name of target column")
-
-class DataAnalyzer(ABC):
-    """Abstract base class for data analysis modules."""
-    @abstractmethod
-    def invoke(self, data: pd.DataFrame, **kwargs) -> Dict[str, Any]:
-        pass
-
-# ---------------------- Concrete Analyzer Implementations ---------------------------
-
-class AdvancedEDA(DataAnalyzer):
-    """Comprehensive Exploratory Data Analysis."""
-    def invoke(self, data: pd.DataFrame, **kwargs) -> Dict[str, Any]:
-        try:
-            analysis = {
-                "dimensionality": {
-                    "rows": len(data),
-                    "columns": list(data.columns),
-                    "memory_usage_MB": f"{data.memory_usage().sum() / 1e6:.2f} MB"
-                },
-                "statistical_profile": data.describe(percentiles=[.25, .5, .75]).to_dict(),
-                "temporal_analysis": {
-                    "date_ranges": {
-                        col: {
-                            "min": data[col].min(),
-                            "max": data[col].max()
-                        } for col in data.select_dtypes(include='datetime').columns
-                    }
-                },
-                "data_quality": {
-                    "missing_values": data.isnull().sum().to_dict(),
-                    "duplicates": data.duplicated().sum(),
-                    "cardinality": {
-                        col: data[col].nunique() for col in data.columns
-                    }
-                }
-            }
-            return analysis
-        except Exception as e:
-            logger.error(f"EDA Failed: {str(e)}")
-            return {"error": f"EDA Failed: {str(e)}"}
-
-class DistributionVisualizer(DataAnalyzer):
-    """Distribution visualizations."""
-    def invoke(self, data: pd.DataFrame, columns: List[str], **kwargs) -> str:
-        try:
-            plt.figure(figsize=(12, 6))
-            for i, col in enumerate(columns, 1):
-                plt.subplot(1, len(columns), i)
-                sns.histplot(data[col], kde=True, stat="density")
-                plt.title(f'Distribution of {col}', fontsize=10)
-                plt.xticks(fontsize=8)
-                plt.yticks(fontsize=8)
-            plt.tight_layout()
-
-            buf = io.BytesIO()
-            plt.savefig(buf, format='png', dpi=300, bbox_inches='tight')
-            plt.close()
-            return base64.b64encode(buf.getvalue()).decode()
-        except Exception as e:
-            logger.error(f"Visualization Error: {str(e)}")
-            return f"Visualization Error: {str(e)}"
-
-class TemporalAnalyzer(DataAnalyzer):
-    """Time series analysis."""
-    def invoke(self, data: pd.DataFrame, time_col: str, value_col: str, **kwargs) -> Dict[str, Any]:
-        try:
-            ts_data = data.set_index(pd.to_datetime(data[time_col]))[value_col]
-            decomposition = seasonal_decompose(ts_data, period=365)
-
-            plt.figure(figsize=(12, 8))
-            decomposition.plot()
-            plt.tight_layout()
-
-            buf = io.BytesIO()
-            plt.savefig(buf, format='png')
-            plt.close()
-            plot_data = base64.b64encode(buf.getvalue()).decode()
-
-            stationarity_p_value = adfuller(ts_data)[1]
-
-            return {
-                "trend_statistics": {
-                    "stationarity_p_value": stationarity_p_value,
-                    "seasonality_strength": float(max(decomposition.seasonal))
-                },
-                "visualization": plot_data
-            }
-        except Exception as e:
-            logger.error(f"Temporal Analysis Failed: {str(e)}")
-            return {"error": f"Temporal Analysis Failed: {str(e)}"}
-
-class HypothesisTester(DataAnalyzer):
-    """Statistical hypothesis testing."""
-    def invoke(self, data: pd.DataFrame, group_col: str, value_col: str, **kwargs) -> Dict[str, Any]:
-        try:
-            groups = data[group_col].unique()
-
-            if len(groups) < 2:
-                return {"error": "Insufficient groups for comparison"}
-
-            group_data = [data[data[group_col] == g][value_col] for g in groups]
-
-            if len(groups) == 2:
-                stat, p = ttest_ind(*group_data)
-                test_type = "Independent t-test"
-                effect_size = self.calculate_cohens_d(group_data[0], group_data[1])
-            else:
-                stat, p = f_oneway(*group_data)
-                test_type = "ANOVA"
-                effect_size = None
-
-            return {
-                "test_type": test_type,
-                "test_statistic": stat,
-                "p_value": p,
-                "effect_size": effect_size,
-                "interpretation": self.interpret_p_value(p)
-            }
-        except Exception as e:
-            logger.error(f"Hypothesis Testing Failed: {str(e)}")
-            return {"error": f"Hypothesis Testing Failed: {str(e)}"}
-
-    @staticmethod
-    def calculate_cohens_d(x: pd.Series, y: pd.Series) -> Optional[float]:
-        """Calculate Cohen's d for effect size."""
-        try:
-            mean_diff = abs(x.mean() - y.mean())
-            pooled_std = np.sqrt((x.var() + y.var()) / 2)
-            return mean_diff / pooled_std
-        except Exception as e:
-            logger.error(f"Error calculating Cohen's d: {str(e)}")
-            return None
-
-    @staticmethod
-    def interpret_p_value(p: float) -> str:
-        """Interpret the p-value."""
-        if p < 0.001:
-            return "Very strong evidence against H0"
-        elif p < 0.01:
-            return "Strong evidence against H0"
-        elif p < 0.05:
-            return "Evidence against H0"
-        elif p < 0.1:
-            return "Weak evidence against H0"
-        else:
-            return "No significant evidence against H0"
-
-class LogisticRegressionTrainer(DataAnalyzer):
-    """Logistic Regression Model Trainer."""
-    def invoke(self, data: pd.DataFrame, target_col: str, columns: List[str], **kwargs) -> Dict[str, Any]:
-        try:
-            X = data[columns]
-            y = data[target_col]
-            X_train, X_test, y_train, y_test = train_test_split(
-                X, y, test_size=0.2, random_state=42
-            )
-            model = LogisticRegression(max_iter=1000)
-            model.fit(X_train, y_train)
-            y_pred = model.predict(X_test)
-            accuracy = accuracy_score(y_test, y_pred)
-            return {
-                "model_type": "Logistic Regression",
-                "accuracy": accuracy,
-                "model_params": model.get_params()
-            }
-        except Exception as e:
-            logger.error(f"Logistic Regression Model Error: {str(e)}")
-            return {"error": f"Logistic Regression Model Error: {str(e)}"}
-
-# ---------------------- Business Logic Layer ---------------------------
-
-class ClinicalRule(BaseModel):
-    """Defines a clinical rule."""
-    name: str
-    condition: str
-    action: str
-    severity: str  # low, medium, or high
-
-class ClinicalRulesEngine:
-    """Executes rules against patient data."""
-    def __init__(self):
-        self.rules: Dict[str, ClinicalRule] = {}
-
-    def add_rule(self, rule: ClinicalRule):
-        self.rules[rule.name] = rule
-
-    def execute_rules(self, data: pd.DataFrame) -> Dict[str, Any]:
-        results = {}
-        for rule_name, rule in self.rules.items():
-            try:
-                # Using safe_eval instead of eval for security
-                rule_matched = self.safe_eval(rule.condition, {"df": data})
-                results[rule_name] = {
-                    "rule_matched": rule_matched,
-                    "action": rule.action if rule_matched else None,
-                    "severity": rule.severity if rule_matched else None
-                }
-            except Exception as e:
-                logger.error(f"Error executing rule '{rule_name}': {str(e)}")
-                results[rule_name] = {
-                    "rule_matched": False,
-                    "error": str(e),
-                    "severity": None
-                }
-        return results
-
-    @staticmethod
-    def safe_eval(expr, variables):
-        """
-        Safely evaluate an expression using AST parsing.
-        Only allows certain node types to prevent execution of arbitrary code.
-        """
-        allowed_nodes = (
-            ast.Expression, ast.BoolOp, ast.BinOp, ast.UnaryOp, ast.Compare,
-            ast.Call, ast.Name, ast.Load, ast.Constant, ast.Num, ast.Str,
-            ast.List, ast.Tuple, ast.Dict
-        )
-        try:
-            node = ast.parse(expr, mode='eval')
-            for subnode in ast.walk(node):
-                if not isinstance(subnode, allowed_nodes):
-                    raise ValueError(f"Unsupported expression: {expr}")
-            return eval(compile(node, '<string>', mode='eval'), {"__builtins__": None}, variables)
-        except Exception as e:
-            logger.error(f"safe_eval error: {str(e)}")
-            raise ValueError(f"Invalid expression: {e}")
-
-class ClinicalKPI(BaseModel):
-    """Define a clinical KPI."""
-    name: str
-    calculation: str
-    threshold: Optional[float] = None
-
-class ClinicalKPIMonitoring:
-    """Calculates KPIs based on data."""
-    def __init__(self):
-        self.kpis: Dict[str, ClinicalKPI] = {}
-
-    def add_kpi(self, kpi: ClinicalKPI):
-        self.kpis[kpi.name] = kpi
-
-    def calculate_kpis(self, data: pd.DataFrame) -> Dict[str, Any]:
-        results = {}
-        for kpi_name, kpi in self.kpis.items():
-            try:
-                # Using safe_eval instead of eval for security
-                kpi_value = self.safe_eval(kpi.calculation, {"df": data})
-                status = self.evaluate_threshold(kpi_value, kpi.threshold)
-                results[kpi_name] = {
-                    "value": kpi_value,
-                    "threshold": kpi.threshold,
-                    "status": status
-                }
-            except Exception as e:
-                logger.error(f"Error calculating KPI '{kpi_name}': {str(e)}")
-                results[kpi_name] = {"error": str(e)}
-        return results
-
-    @staticmethod
-    def evaluate_threshold(value: Any, threshold: Optional[float]) -> Optional[str]:
-        if threshold is None:
-            return None
-        try:
-            return "Above Threshold" if value > threshold else "Below Threshold"
-        except TypeError:
-            return "Threshold Evaluation Not Applicable"
-
-    @staticmethod
-    def safe_eval(expr, variables):
-        """
-        Safely evaluate an expression using AST parsing.
-        Only allows certain node types to prevent execution of arbitrary code.
-        """
-        allowed_nodes = (
-            ast.Expression, ast.BoolOp, ast.BinOp, ast.UnaryOp, ast.Compare,
-            ast.Call, ast.Name, ast.Load, ast.Constant, ast.Num, ast.Str,
-            ast.List, ast.Tuple, ast.Dict
-        )
-        try:
-            node = ast.parse(expr, mode='eval')
-            for subnode in ast.walk(node):
-                if not isinstance(subnode, allowed_nodes):
-                    raise ValueError(f"Unsupported expression: {expr}")
-            return eval(compile(node, '<string>', mode='eval'), {"__builtins__": None}, variables)
-        except Exception as e:
-            logger.error(f"safe_eval error: {str(e)}")
-            raise ValueError(f"Invalid expression: {e}")
-
-class DiagnosisSupport(ABC):
-    """Abstract class for implementing clinical diagnoses."""
-    @abstractmethod
-    def diagnose(
-        self, 
-        data: pd.DataFrame, 
-        target_col: str, 
-        columns: List[str], 
-        diagnosis_key: str = "diagnosis", 
-        **kwargs
-    ) -> pd.DataFrame:
-        pass
-
-class SimpleDiagnosis(DiagnosisSupport):
-    """Provides a simple diagnosis example, based on the Logistic regression model."""
-    def __init__(self):
-        self.model_trainer: LogisticRegressionTrainer = LogisticRegressionTrainer()
-
-    def diagnose(
-        self, 
-        data: pd.DataFrame, 
-        target_col: str, 
-        columns: List[str], 
-        diagnosis_key: str = "diagnosis", 
-        **kwargs
-    ) -> pd.DataFrame:
-        try:
-            result = self.model_trainer.invoke(data, target_col=target_col, columns=columns)
-            if "accuracy" in result:
-                return pd.DataFrame({
-                    diagnosis_key: [f"Model Accuracy: {result['accuracy']:.2%}"],
-                    "model": [result["model_type"]]
-                })
-            else:
-                return pd.DataFrame({
-                    diagnosis_key: [f"Diagnosis failed: {result.get('error', 'Unknown error')}"]
-                })
-        except Exception as e:
-            logger.error(f"Error during diagnosis: {str(e)}")
-            return pd.DataFrame({
-                diagnosis_key: [f"Error during diagnosis: {e}"]
-            })
-
-class TreatmentRecommendation(ABC):
-    """Abstract class for treatment recommendations."""
-    @abstractmethod
-    def recommend(
-        self, 
-        data: pd.DataFrame,  
-        condition_col: str, 
-        treatment_col: str, 
-        recommendation_key: str = "recommendation", 
-        **kwargs
-    ) -> pd.DataFrame:
-        pass
-
-class BasicTreatmentRecommendation(TreatmentRecommendation):
-    """A placeholder class for basic treatment recommendations."""
-    def recommend(
-        self, 
-        data: pd.DataFrame, 
-        condition_col: str, 
-        treatment_col: str, 
-        recommendation_key: str = "recommendation", 
-        **kwargs
-    ) -> pd.DataFrame:
-        if condition_col not in data.columns or treatment_col not in data.columns:
-            logger.warning(f"Condition or Treatment columns not found: {condition_col}, {treatment_col}")
-            return pd.DataFrame({
-                recommendation_key: ["Condition or Treatment columns not found!"]
-            })
-        
-        treatment = data[data[condition_col] == "High"][treatment_col].to_list()
-        if treatment:
-            return pd.DataFrame({
-                recommendation_key: [f"Treatment recommended for High risk patients: {treatment}"]
-            })
-        else:
-            return pd.DataFrame({
-                recommendation_key: ["No treatment recommendation found!"]
-            })
-
-# ---------------------- Medical Knowledge Base ---------------------------
-
-class MedicalKnowledgeBase(ABC):
-    """Abstract class for Medical Knowledge."""
-    @abstractmethod
-    def search_medical_info(self, query: str, pub_email: str = "") -> str:
-        pass
-
-class SimpleMedicalKnowledge(MedicalKnowledgeBase):
-    """Enhanced Medical Knowledge Class using OpenAI GPT-4."""
-    def __init__(self, nlp_model):
-        self.nlp = nlp_model  # Using the loaded spaCy model
-
-    def search_medical_info(self, query: str, pub_email: str = "") -> str:
-        """
-        Uses OpenAI's GPT-4 to fetch medical information based on the user's query.
-        """
-        logger.info(f"Received medical query: {query}")
-        try:
-            # Preprocess the query (e.g., entity recognition)
-            doc = self.nlp(query.lower())
-            entities = [ent.text for ent in doc.ents]
-            processed_query = " ".join(entities) if entities else query.lower()
-
-            logger.info(f"Processed query: {processed_query}")
-
-            # Create a prompt for GPT-4
-            prompt = f"""
-            You are a medical assistant. Provide a comprehensive and accurate response to the following medical query:
-
-            Query: {processed_query}
-
-            Please ensure the information is clear, concise, and evidence-based.
-            """
-
-            # Make the API request to OpenAI GPT-4
-            response = openai.ChatCompletion.create(
-                model="gpt-4",
-                messages=[
-                    {"role": "system", "content": "You are a helpful medical assistant."},
-                    {"role": "user", "content": prompt}
-                ],
-                max_tokens=500,
-                temperature=0.7,
-            )
-
-            # Extract the answer from the response
-            answer = response.choices[0].message['content'].strip()
-
-            logger.info("Successfully retrieved data from OpenAI GPT-4.")
-
-            # Fetch PubMed abstract related to the query
-            pubmed_abstract = self.fetch_pubmed_abstract(processed_query, pub_email)
-
-            # Format the response
-            return f"**Based on your query:** {answer}\n\n**PubMed Abstract:**\n\n{pubmed_abstract}"
-
-        except RateLimitError as e:
-            logger.error(f"Rate Limit Exceeded: {str(e)}")
-            return "Rate limit exceeded. Please try again later."
-        except InvalidRequestError as e:
-            logger.error(f"Invalid Request: {str(e)}")
-            return f"Invalid request: {str(e)}"
-        except APIError as e:
-            logger.error(f"OpenAI API Error: {str(e)}")
-            return f"OpenAI API Error: {str(e)}"
-        except Exception as e:
-            logger.error(f"Medical Knowledge Search Failed: {str(e)}")
-            return f"Medical Knowledge Search Failed: {str(e)}"
-
-    def fetch_pubmed_abstract(self, query: str, email: str) -> str:
-        """
-        Searches PubMed for abstracts related to the query.
-        """
-        try:
-            if not email:
-                logger.warning("PubMed abstract retrieval skipped: Email not provided.")
-                return "No PubMed abstract available: Email not provided."
-
-            Entrez.email = email
-            handle = Entrez.esearch(db="pubmed", term=query, retmax=1, sort='relevance')
-            record = Entrez.read(handle)
-            handle.close()
-            logger.info(f"PubMed search for query '{query}' returned IDs: {record['IdList']}")
-
-            if record["IdList"]:
-                handle = Entrez.efetch(db="pubmed", id=record["IdList"][0], rettype="abstract", retmode="text")
-                abstract = handle.read()
-                handle.close()
-                logger.info(f"Fetched PubMed abstract for ID {record['IdList'][0]}")
-                return abstract
-            else:
-                logger.info(f"No PubMed abstracts found for query '{query}'.")
-                return "No abstracts found for this query on PubMed."
-        except Exception as e:
-            logger.error(f"Error searching PubMed: {e}")
-            return f"Error searching PubMed: {e}"
-
-# ---------------------- Forecasting Engine ---------------------------
-
-class ForecastingEngine(ABC):
-    """Abstract class for forecasting."""
-    @abstractmethod
-    def predict(self, data: pd.DataFrame, **kwargs) -> pd.DataFrame:
-        pass
-
-class SimpleForecasting(ForecastingEngine):
-    """Simple forecasting engine."""
-    def predict(self, data: pd.DataFrame, period: int = 7, **kwargs) -> pd.DataFrame:
-        # Placeholder for actual forecasting logic
-        return pd.DataFrame({"forecast": [f"Forecast for the next {period} days"]})
-
-# ---------------------- Insights and Reporting Layer ---------------------------
-
-class AutomatedInsights:
-    """Generates automated insights based on selected analyses."""
-    def __init__(self):
-        self.analyses: Dict[str, DataAnalyzer] = {
-            "EDA": AdvancedEDA(),
-            "temporal": TemporalAnalyzer(),
-            "distribution": DistributionVisualizer(),
-            "hypothesis": HypothesisTester(),
-            "model": LogisticRegressionTrainer()
-        }
-
-    def generate_insights(self, data: pd.DataFrame, analysis_names: List[str], **kwargs) -> Dict[str, Any]:
-        results = {}
-        for name in analysis_names:
-            analyzer = self.analyses.get(name)
-            if analyzer:
-                try:
-                    results[name] = analyzer.invoke(data=data, **kwargs)
-                except Exception as e:
-                    logger.error(f"Error in analysis '{name}': {str(e)}")
-                    results[name] = {"error": str(e)}
-            else:
-                logger.warning(f"Analysis '{name}' not found.")
-                results[name] = {"error": "Analysis not found"}
-        return results
-
-class Dashboard:
-    """Handles the creation and display of the dashboard."""
-    def __init__(self):
-        self.layout: Dict[str, str] = {}
-
-    def add_visualisation(self, vis_name: str, vis_type: str):
-        self.layout[vis_name] = vis_type
-
-    def display_dashboard(self, data_dict: Dict[str, pd.DataFrame]):
-        st.header("Dashboard")
-        for vis_name, vis_type in self.layout.items():
-            st.subheader(vis_name)
-            df = data_dict.get(vis_name)
-            if df is not None:
-                if vis_type == "table":
-                    st.table(df)
-                elif vis_type == "plot":
-                    if len(df.columns) > 1:
-                        fig = plt.figure()
-                        sns.lineplot(data=df)
-                        st.pyplot(fig)
-                    else:
-                        st.write("Please select a DataFrame with more than 1 column for plotting.")
-            else:
-                st.write("Data Not Found")
-
-class AutomatedReports:
-    """Manages automated report definitions and generation."""
-    def __init__(self):
-        self.report_definitions: Dict[str, str] = {}
-
-    def create_report_definition(self, report_name: str, definition: str):
-        self.report_definitions[report_name] = definition
-
-    def generate_report(self, report_name: str, data: Dict[str, pd.DataFrame]) -> Dict[str, Any]:
-        if report_name not in self.report_definitions:
-            return {"error": "Report name not found"}
-        report_content = {
-            "Report Name": report_name,
-            "Report Definition": self.report_definitions[report_name],
-            "Data": {df_name: df.to_dict() for df_name, df in data.items()}
-        }
-        return report_content
-
-# ---------------------- Data Acquisition Layer ---------------------------
-
-class DataSource(ABC):
-    """Base class for data sources."""
-    @abstractmethod
-    def connect(self) -> None:
-        """Connect to the data source."""
-        pass
-
-    @abstractmethod
-    def fetch_data(self, query: str, **kwargs) -> pd.DataFrame:
-        """Fetch the data based on a specific query."""
-        pass
-
-class CSVDataSource(DataSource):
-    """Data source for CSV files."""
-    def __init__(self, file_path: io.BytesIO):
-        self.file_path = file_path
-        self.data: Optional[pd.DataFrame] = None
-
-    def connect(self):
-        self.data = pd.read_csv(self.file_path)
-
-    def fetch_data(self, query: str = None, **kwargs) -> pd.DataFrame:
-        if self.data is None:
-            raise Exception("No connection is made, call connect()")
-        return self.data
-
-class DatabaseSource(DataSource):
-    """Data source for SQL Databases."""
-    def __init__(self, connection_string: str, database_type: str):
-        self.connection_string = connection_string
-        self.database_type = database_type.lower()
-        self.connection = None
-
-    def connect(self):
-        if self.database_type == "sql":
-            # Placeholder for actual SQL connection logic
-            self.connection = "Connected to SQL Database"
-        else:
-            raise Exception(f"Database type '{self.database_type}' is not supported.")
-
-    def fetch_data(self, query: str, **kwargs) -> pd.DataFrame:
-        if self.connection is None:
-            raise Exception("No connection is made, call connect()")
-        # Placeholder for data fetching logic
-        return pd.DataFrame({"result": [f"Fetched data based on query: {query}"]})
-
-class DataIngestion:
-    """Handles data ingestion from various sources."""
-    def __init__(self):
-        self.sources: Dict[str, DataSource] = {}
-
-    def add_source(self, source_name: str, source: DataSource):
-        self.sources[source_name] = source
-
-    def ingest_data(self, source_name: str, query: str = None, **kwargs) -> pd.DataFrame:
-        if source_name not in self.sources:
-            raise Exception(f"Source '{source_name}' not found.")
-        source = self.sources[source_name]
-        source.connect()
-        return source.fetch_data(query, **kwargs)
-
-class DataModel(BaseModel):
-    """Defines a data model."""
-    name: str
-    kpis: List[str] = Field(default_factory=list)
-    dimensions: List[str] = Field(default_factory=list)
-    custom_calculations: Optional[Dict[str, str]] = None
-    relations: Optional[Dict[str, str]] = None  # Example: {"table1": "table2"}
-
-    def to_json(self) -> str:
-        return json.dumps(self.dict())
-
-    @staticmethod
-    def from_json(json_str: str) -> 'DataModel':
-        return DataModel(**json.loads(json_str))
-
-class DataModelling:
-    """Manages data models."""
-    def __init__(self):
-        self.models: Dict[str, DataModel] = {}
-
-    def add_model(self, model: DataModel):
-        self.models[model.name] = model
-
-    def get_model(self, model_name: str) -> DataModel:
-        if model_name not in self.models:
-            raise Exception(f"Model '{model_name}' not found.")
-        return self.models[model_name]
-
-# ---------------------- Main Streamlit Application ---------------------------
-
-def main():
-    """Main function to run the Streamlit app."""
-    st.title("🏥 AI-Powered Clinical Intelligence Hub")
-
-    # Initialize Session State
-    initialize_session_state()
-
-    # Sidebar for Data Management
-    with st.sidebar:
-        data_management_section()
-
-    # Main Content
-    if st.session_state.data:
-        col1, col2 = st.columns([1, 3])
-
-        with col1:
-            dataset_metadata_section()
-
-        with col2:
-            main_tabs_section()
-
-def initialize_session_state():
-    """Initialize necessary components in Streamlit's session state."""
-    if 'data' not in st.session_state:
-        st.session_state.data = {}  # Store pd.DataFrame under a name
-    if 'data_ingestion' not in st.session_state:
-        st.session_state.data_ingestion = DataIngestion()
-    if 'data_modelling' not in st.session_state:
-        st.session_state.data_modelling = DataModelling()
-    if 'clinical_rules' not in st.session_state:
-        st.session_state.clinical_rules = ClinicalRulesEngine()
-    if 'kpi_monitoring' not in st.session_state:
-        st.session_state.kpi_monitoring = ClinicalKPIMonitoring()
-    if 'forecasting_engine' not in st.session_state:
-        st.session_state.forecasting_engine = SimpleForecasting()
-    if 'automated_insights' not in st.session_state:
-        st.session_state.automated_insights = AutomatedInsights()
-    if 'dashboard' not in st.session_state:
-        st.session_state.dashboard = Dashboard()
-    if 'automated_reports' not in st.session_state:
-        st.session_state.automated_reports = AutomatedReports()
-    if 'diagnosis_support' not in st.session_state:
-        st.session_state.diagnosis_support = SimpleDiagnosis()
-    if 'treatment_recommendation' not in st.session_state:
-        st.session_state.treatment_recommendation = BasicTreatmentRecommendation()
-    if 'knowledge_base' not in st.session_state:
-        st.session_state.knowledge_base = SimpleMedicalKnowledge(nlp_model=nlp)
-    if 'pub_email' not in st.session_state:
-        st.session_state.pub_email = PUB_EMAIL  # Load PUB_EMAIL from environment variables
-
-def data_management_section():
-    """Handles the data management section in the sidebar."""
-    st.header("⚙️ Data Management")
-    data_source_selection = st.selectbox("Select Data Source Type", ["CSV", "SQL Database"])
-
-    if data_source_selection == "CSV":
-        handle_csv_upload()
-    elif data_source_selection == "SQL Database":
-        handle_sql_database()
-
-    if st.button("Ingest Data"):
-        ingest_data_action()
-
-def handle_csv_upload():
-    """Handles CSV file uploads."""
-    uploaded_file = st.file_uploader("Upload research dataset (CSV)", type=["csv"])
-    if uploaded_file:
-        source_name = st.text_input("Data Source Name")
-        if source_name:
-            try:
-                csv_source = CSVDataSource(file_path=uploaded_file)
-                st.session_state.data_ingestion.add_source(source_name, csv_source)
-                st.success(f"Uploaded {uploaded_file.name} as '{source_name}'.")
-            except Exception as e:
-                st.error(f"Error loading dataset: {e}")
-
-def handle_sql_database():
-    """Handles SQL database connections."""
-    conn_str = st.text_input("Enter connection string for SQL DB")
-    if conn_str:
-        source_name = st.text_input("Data Source Name")
-        if source_name:
-            try:
-                sql_source = DatabaseSource(connection_string=conn_str, database_type="sql")
-                st.session_state.data_ingestion.add_source(source_name, sql_source)
-                st.success(f"Added SQL DB Source '{source_name}'.")
-            except Exception as e:
-                st.error(f"Error loading database source: {e}")
-
-def ingest_data_action():
-    """Performs data ingestion from the selected source."""
-    if st.session_state.data_ingestion.sources:
-        source_name_to_fetch = st.selectbox("Select Data Source to Ingest", list(st.session_state.data_ingestion.sources.keys()))
-        query = st.text_area("Optional Query to Fetch data")
-        if source_name_to_fetch:
-            with st.spinner("Ingesting data..."):
-                try:
-                    data = st.session_state.data_ingestion.ingest_data(source_name_to_fetch, query)
-                    st.session_state.data[source_name_to_fetch] = data
-                    st.success(f"Ingested data from '{source_name_to_fetch}'.")
-                except Exception as e:
-                    st.error(f"Ingestion failed: {e}")
-    else:
-        st.error("No data source added. Please add a data source.")
-
-def dataset_metadata_section():
-    """Displays metadata for the selected dataset."""
-    st.subheader("Dataset Metadata")
-    data_source_keys = list(st.session_state.data.keys())
-    selected_data_key = st.selectbox("Select Dataset", data_source_keys)
-
-    if selected_data_key:
-        data = st.session_state.data[selected_data_key]
-        metadata = {
-            "Variables": list(data.columns),
-            "Time Range": {
-                col: {
-                    "min": data[col].min(),
-                    "max": data[col].max()
-                } for col in data.select_dtypes(include='datetime').columns
-            },
-            "Size": f"{data.memory_usage().sum() / 1e6:.2f} MB"
-        }
-        st.json(metadata)
-        # Store the selected dataset key in session state for use in analysis
-        st.session_state.selected_data_key = selected_data_key
-
-def main_tabs_section():
-    """Creates and manages the main tabs in the application."""
-    analysis_tab, clinical_logic_tab, insights_tab, reports_tab, knowledge_tab = st.tabs([
-        "Data Analysis",
-        "Clinical Logic",
-        "Insights",
-        "Reports",
-        "Medical Knowledge"
-    ])
-
-    with analysis_tab:
-        data_analysis_section()
-
-    with clinical_logic_tab:
-        clinical_logic_section()
-
-    with insights_tab:
-        insights_section()
-
-    with reports_tab:
-        reports_section()
-
-    with knowledge_tab:
-        medical_knowledge_section()
-
-def data_analysis_section():
-    """Handles the Data Analysis tab."""
-    selected_data_key = st.session_state.get('selected_data_key', None)
-    if not selected_data_key:
-        st.warning("Please select a dataset from the metadata section.")
-        return
-
-    data = st.session_state.data[selected_data_key]
-    analysis_type = st.selectbox("Select Analysis Mode", [
-        "Exploratory Data Analysis",
-        "Temporal Pattern Analysis",
-        "Comparative Statistics",
-        "Distribution Analysis",
-        "Train Logistic Regression Model"
-    ])
-
-    if analysis_type == "Exploratory Data Analysis":
-        perform_eda(data)
-    elif analysis_type == "Temporal Pattern Analysis":
-        perform_temporal_analysis(data)
-    elif analysis_type == "Comparative Statistics":
-        perform_comparative_statistics(data)
-    elif analysis_type == "Distribution Analysis":
-        perform_distribution_analysis(data)
-    elif analysis_type == "Train Logistic Regression Model":
-        perform_logistic_regression_training(data)
-
-def perform_eda(data: pd.DataFrame):
-    """Performs Exploratory Data Analysis."""
-    analyzer = AdvancedEDA()
-    eda_result = analyzer.invoke(data=data)
-    st.subheader("Data Quality Report")
-    st.json(eda_result)
-
-def perform_temporal_analysis(data: pd.DataFrame):
-    """Performs Temporal Pattern Analysis."""
-    time_cols = data.select_dtypes(include='datetime').columns
-    num_cols = data.select_dtypes(include=np.number).columns
-
-    if len(time_cols) == 0:
-        st.warning("No datetime columns available for temporal analysis.")
-        return
-
-    time_col = st.selectbox("Select Temporal Variable", time_cols)
-    value_col = st.selectbox("Select Analysis Variable", num_cols)
-
-    if time_col and value_col:
-        analyzer = TemporalAnalyzer()
-        result = analyzer.invoke(data=data, time_col=time_col, value_col=value_col)
-        if "visualization" in result and result["visualization"]:
-            st.image(f"data:image/png;base64,{result['visualization']}", use_column_width=True)
-        st.json(result)
-
-def perform_comparative_statistics(data: pd.DataFrame):
-    """Performs Comparative Statistics."""
-    categorical_cols = data.select_dtypes(include=['category', 'object']).columns
-    numeric_cols = data.select_dtypes(include=np.number).columns
-
-    if len(categorical_cols) == 0:
-        st.warning("No categorical columns available for hypothesis testing.")
-        return
-
-    if len(numeric_cols) == 0:
-        st.warning("No numerical columns available for hypothesis testing.")
-        return
-
-    group_col = st.selectbox("Select Grouping Variable", categorical_cols)
-    value_col = st.selectbox("Select Metric Variable", numeric_cols)
-
-    if group_col and value_col:
-        analyzer = HypothesisTester()
-        result = analyzer.invoke(data=data, group_col=group_col, value_col=value_col)
-        st.subheader("Statistical Test Results")
-        st.json(result)
-
-def perform_distribution_analysis(data: pd.DataFrame):
-    """Performs Distribution Analysis."""
-    numeric_cols = data.select_dtypes(include=np.number).columns.tolist()
-    selected_cols = st.multiselect("Select Variables for Distribution Analysis", numeric_cols)
-
-    if selected_cols:
-        analyzer = DistributionVisualizer()
-        img_data = analyzer.invoke(data=data, columns=selected_cols)
-        if not img_data.startswith("Visualization Error"):
-            st.image(f"data:image/png;base64,{img_data}", use_column_width=True)
-        else:
-            st.error(img_data)
-    else:
-        st.info("Please select at least one numerical column to visualize.")
-
-def perform_logistic_regression_training(data: pd.DataFrame):
-    """Trains a Logistic Regression model."""
-    numeric_cols = data.select_dtypes(include=np.number).columns.tolist()
-    target_col = st.selectbox("Select Target Variable", data.columns.tolist())
-    selected_cols = st.multiselect("Select Feature Variables", numeric_cols)
-
-    if selected_cols and target_col:
-        analyzer = LogisticRegressionTrainer()
-        result = analyzer.invoke(data=data, target_col=target_col, columns=selected_cols)
-        st.subheader("Logistic Regression Model Results")
-        st.json(result)
-    else:
-        st.warning("Please select both target and feature variables for model training.")
-
-def clinical_logic_section():
-    """Handles the Clinical Logic tab."""
-    st.header("Clinical Logic")
-    
-    # Clinical Rules Management
-    st.subheader("Clinical Rules")
-    rule_name = st.text_input("Enter Rule Name")
-    condition = st.text_area("Enter Rule Condition (use 'df' for DataFrame)", 
-                             help="Example: df['blood_pressure'] > 140")
-    action = st.text_area("Enter Action to be Taken on Rule Match")
-    severity = st.selectbox("Enter Severity for the Rule", ["low", "medium", "high"])
-
-    if st.button("Add Clinical Rule"):
-        if rule_name and condition and action and severity:
-            try:
-                rule = ClinicalRule(
-                    name=rule_name, 
-                    condition=condition, 
-                    action=action, 
-                    severity=severity
-                )
-                st.session_state.clinical_rules.add_rule(rule)
-                st.success("Added Clinical Rule successfully.")
-            except Exception as e:
-                st.error(f"Error in rule definition: {e}")
-        else:
-            st.error("Please fill in all fields to add a clinical rule.")
-
-    # Clinical KPI Management
-    st.subheader("Clinical KPI Definition")
-    kpi_name = st.text_input("Enter KPI Name")
-    kpi_calculation = st.text_area("Enter KPI Calculation (use 'df' for DataFrame)", 
-                                    help="Example: df['patient_count'].sum()")
-    threshold = st.text_input("Enter Threshold for KPI (Optional)", help="Leave blank if not applicable")
-
-    if st.button("Add Clinical KPI"):
-        if kpi_name and kpi_calculation:
-            try:
-                threshold_value = float(threshold) if threshold else None
-                kpi = ClinicalKPI(
-                    name=kpi_name, 
-                    calculation=kpi_calculation, 
-                    threshold=threshold_value
-                )
-                st.session_state.kpi_monitoring.add_kpi(kpi)
-                st.success(f"Added KPI '{kpi_name}' successfully.")
-            except ValueError:
-                st.error("Threshold must be a numeric value.")
-            except Exception as e:
-                st.error(f"Error creating KPI: {e}")
-        else:
-            st.error("Please provide both KPI name and calculation.")
-
-    # Execute Clinical Rules and Calculate KPIs
-    selected_data_key = st.selectbox("Select Dataset for Clinical Logic", list(st.session_state.data.keys()))
-    if selected_data_key:
-        data = st.session_state.data[selected_data_key]
-        if st.button("Execute Clinical Rules"):
-            with st.spinner("Executing Clinical Rules..."):
-                result = st.session_state.clinical_rules.execute_rules(data)
-                st.json(result)
-        if st.button("Calculate Clinical KPIs"):
-            with st.spinner("Calculating Clinical KPIs..."):
-                result = st.session_state.kpi_monitoring.calculate_kpis(data)
-                st.json(result)
-    else:
-        st.warning("Please ingest data to execute clinical rules and calculate KPIs.")
-
-def insights_section():
-    """Handles the Insights tab."""
-    st.header("Automated Insights")
-
-    selected_data_key = st.selectbox("Select Dataset for Insights", list(st.session_state.data.keys()))
-    if not selected_data_key:
-        st.warning("Please select a dataset to generate insights.")
-        return
-
-    data = st.session_state.data[selected_data_key]
-    available_analyses = ["EDA", "temporal", "distribution", "hypothesis", "model"]
-    selected_analyses = st.multiselect("Select Analyses for Insights", available_analyses)
-
-    if st.button("Generate Automated Insights"):
-        if selected_analyses:
-            with st.spinner("Generating Insights..."):
-                results = st.session_state.automated_insights.generate_insights(
-                    data, analysis_names=selected_analyses
-                )
-                st.json(results)
-        else:
-            st.warning("Please select at least one analysis to generate insights.")
-
-    # Diagnosis Support
-    st.subheader("Diagnosis Support")
-    target_col = st.selectbox("Select Target Variable for Diagnosis", data.columns.tolist())
-    numeric_cols = data.select_dtypes(include=np.number).columns.tolist()
-    selected_feature_cols = st.multiselect("Select Feature Variables for Diagnosis", numeric_cols)
-
-    if st.button("Generate Diagnosis"):
-        if target_col and selected_feature_cols:
-            with st.spinner("Generating Diagnosis..."):
-                result = st.session_state.diagnosis_support.diagnose(
-                    data, target_col=target_col, columns=selected_feature_cols, diagnosis_key="diagnosis_result"
-                )
-                st.json(result)
-        else:
-            st.error("Please select both target and feature variables for diagnosis.")
-
-    # Treatment Recommendation
-    st.subheader("Treatment Recommendation")
-    condition_col = st.selectbox("Select Condition Column for Treatment Recommendation", data.columns.tolist())
-    treatment_col = st.selectbox("Select Treatment Column for Treatment Recommendation", data.columns.tolist())
-
-    if st.button("Generate Treatment Recommendation"):
-        if condition_col and treatment_col:
-            with st.spinner("Generating Treatment Recommendation..."):
-                result = st.session_state.treatment_recommendation.recommend(
-                    data, condition_col=condition_col, treatment_col=treatment_col, recommendation_key="treatment_recommendation"
-                )
-                st.json(result)
-        else:
-            st.error("Please select both condition and treatment columns.")
-
-def reports_section():
-    """Handles the Reports tab."""
-    st.header("Automated Reports")
-    
-    # Create Report Definition
-    st.subheader("Create Report Definition")
-    report_name = st.text_input("Report Name")
-    report_def = st.text_area("Report Definition", help="Describe the structure and content of the report.")
-
-    if st.button("Create Report Definition"):
-        if report_name and report_def:
-            st.session_state.automated_reports.create_report_definition(report_name, report_def)
-            st.success("Report definition created successfully.")
-        else:
-            st.error("Please provide both report name and definition.")
-
-    # Generate Report
-    st.subheader("Generate Report")
-    report_names = list(st.session_state.automated_reports.report_definitions.keys())
-    if report_names:
-        report_name_to_generate = st.selectbox("Select Report to Generate", report_names)
-        if st.button("Generate Report"):
-            with st.spinner("Generating Report..."):
-                report = st.session_state.automated_reports.generate_report(report_name_to_generate, st.session_state.data)
-                if "error" not in report:
-                    st.header(f"Report: {report['Report Name']}")
-                    st.markdown(f"**Definition:** {report['Report Definition']}")
-                    for df_name, df_content in report["Data"].items():
-                        st.subheader(f"Data: {df_name}")
-                        st.dataframe(pd.DataFrame(df_content))
-                else:
-                    st.error(report["error"])
-    else:
-        st.info("No report definitions found. Please create a report definition first.")
-
-def medical_knowledge_section():
-    """Handles the Medical Knowledge tab."""
-    st.header("Medical Knowledge")
-    query = st.text_input("Enter your medical question here:")
-
-    if st.button("Search"):
-        if query.strip():
-            with st.spinner("Searching..."):
-                result = st.session_state.knowledge_base.search_medical_info(
-                    query, pub_email=st.session_state.pub_email
-                )
-                st.markdown(result)
-        else:
-            st.error("Please enter a medical question to search.")
-
-if __name__ == "__main__":
-    main()
+import os
+import json
+import base64
+import io
+import ast
+import logging
+from abc import ABC, abstractmethod
+from typing import Dict, List, Optional, Any
+
+import numpy as np
+import pandas as pd
+import matplotlib.pyplot as plt
+import seaborn as sns
+import streamlit as st
+import spacy
+
+from scipy.stats import ttest_ind, f_oneway
+from sklearn.model_selection import train_test_split
+from sklearn.linear_model import LogisticRegression
+from sklearn.metrics import accuracy_score
+
+from statsmodels.tsa.seasonal import seasonal_decompose
+from statsmodels.tsa.stattools import adfuller
+
+from pydantic import BaseModel, Field
+from Bio import Entrez  # Ensure BioPython is installed
+
+from dotenv import load_dotenv
+import requests
+import openai  # Updated for OpenAI SDK v1.0.0+
+from openai.error import APIError, RateLimitError, InvalidRequestError
+
+# ---------------------- Load Environment Variables ---------------------------
+load_dotenv()
+
+# ---------------------- Logging Configuration ---------------------------
+logging.basicConfig(
+    filename='app.log',
+    filemode='a',
+    format='%(asctime)s - %(levelname)s - %(message)s',
+    level=logging.INFO
+)
+logger = logging.getLogger()
+
+# ---------------------- Streamlit Page Configuration ---------------------------
+st.set_page_config(page_title="AI Clinical Intelligence Hub", layout="wide")
+
+# ---------------------- Initialize OpenAI SDK ---------------------------
+OPENAI_API_KEY = os.getenv("OPENAI_API_KEY")
+PUB_EMAIL = os.getenv("PUB_EMAIL", "")
+
+if not OPENAI_API_KEY:
+    st.error("OpenAI API key must be set as an environment variable (OPENAI_API_KEY).")
+    st.stop()
+
+# Set the OpenAI API key
+openai.api_key = OPENAI_API_KEY
+
+# ---------------------- Load spaCy Model ---------------------------
+try:
+    nlp = spacy.load("en_core_web_sm")
+except OSError:
+    # Avoid using Streamlit commands before set_page_config()
+    import subprocess
+    import sys
+    subprocess.run([sys.executable, "-m", "spacy", "download", "en_core_web_sm"])
+    nlp = spacy.load("en_core_web_sm")
+
+# ---------------------- Base Classes and Schemas ---------------------------
+
+class ResearchInput(BaseModel):
+    """Base schema for research tool inputs."""
+    data_key: str = Field(..., description="Session state key containing DataFrame")
+    columns: Optional[List[str]] = Field(None, description="List of columns to analyze")
+
+class TemporalAnalysisInput(ResearchInput):
+    """Schema for temporal analysis."""
+    time_col: str = Field(..., description="Name of timestamp column")
+    value_col: str = Field(..., description="Name of value column to analyze")
+
+class HypothesisInput(ResearchInput):
+    """Schema for hypothesis testing."""
+    group_col: str = Field(..., description="Categorical column defining groups")
+    value_col: str = Field(..., description="Numerical column to compare")
+
+class ModelTrainingInput(ResearchInput):
+    """Schema for model training."""
+    target_col: str = Field(..., description="Name of target column")
+
+class DataAnalyzer(ABC):
+    """Abstract base class for data analysis modules."""
+    @abstractmethod
+    def invoke(self, data: pd.DataFrame, **kwargs) -> Dict[str, Any]:
+        pass
+
+# ---------------------- Concrete Analyzer Implementations ---------------------------
+
+class AdvancedEDA(DataAnalyzer):
+    """Comprehensive Exploratory Data Analysis."""
+    def invoke(self, data: pd.DataFrame, **kwargs) -> Dict[str, Any]:
+        try:
+            analysis = {
+                "dimensionality": {
+                    "rows": len(data),
+                    "columns": list(data.columns),
+                    "memory_usage_MB": f"{data.memory_usage().sum() / 1e6:.2f} MB"
+                },
+                "statistical_profile": data.describe(percentiles=[.25, .5, .75]).to_dict(),
+                "temporal_analysis": {
+                    "date_ranges": {
+                        col: {
+                            "min": data[col].min(),
+                            "max": data[col].max()
+                        } for col in data.select_dtypes(include='datetime').columns
+                    }
+                },
+                "data_quality": {
+                    "missing_values": data.isnull().sum().to_dict(),
+                    "duplicates": data.duplicated().sum(),
+                    "cardinality": {
+                        col: data[col].nunique() for col in data.columns
+                    }
+                }
+            }
+            return analysis
+        except Exception as e:
+            logger.error(f"EDA Failed: {str(e)}")
+            return {"error": f"EDA Failed: {str(e)}"}
+
+class DistributionVisualizer(DataAnalyzer):
+    """Distribution visualizations."""
+    def invoke(self, data: pd.DataFrame, columns: List[str], **kwargs) -> str:
+        try:
+            plt.figure(figsize=(12, 6))
+            for i, col in enumerate(columns, 1):
+                plt.subplot(1, len(columns), i)
+                sns.histplot(data[col], kde=True, stat="density")
+                plt.title(f'Distribution of {col}', fontsize=10)
+                plt.xticks(fontsize=8)
+                plt.yticks(fontsize=8)
+            plt.tight_layout()
+
+            buf = io.BytesIO()
+            plt.savefig(buf, format='png', dpi=300, bbox_inches='tight')
+            plt.close()
+            return base64.b64encode(buf.getvalue()).decode()
+        except Exception as e:
+            logger.error(f"Visualization Error: {str(e)}")
+            return f"Visualization Error: {str(e)}"
+
+class TemporalAnalyzer(DataAnalyzer):
+    """Time series analysis."""
+    def invoke(self, data: pd.DataFrame, time_col: str, value_col: str, **kwargs) -> Dict[str, Any]:
+        try:
+            ts_data = data.set_index(pd.to_datetime(data[time_col]))[value_col]
+            decomposition = seasonal_decompose(ts_data, period=365)
+
+            plt.figure(figsize=(12, 8))
+            decomposition.plot()
+            plt.tight_layout()
+
+            buf = io.BytesIO()
+            plt.savefig(buf, format='png')
+            plt.close()
+            plot_data = base64.b64encode(buf.getvalue()).decode()
+
+            stationarity_p_value = adfuller(ts_data)[1]
+
+            return {
+                "trend_statistics": {
+                    "stationarity_p_value": stationarity_p_value,
+                    "seasonality_strength": float(max(decomposition.seasonal))
+                },
+                "visualization": plot_data
+            }
+        except Exception as e:
+            logger.error(f"Temporal Analysis Failed: {str(e)}")
+            return {"error": f"Temporal Analysis Failed: {str(e)}"}
+
+class HypothesisTester(DataAnalyzer):
+    """Statistical hypothesis testing."""
+    def invoke(self, data: pd.DataFrame, group_col: str, value_col: str, **kwargs) -> Dict[str, Any]:
+        try:
+            groups = data[group_col].unique()
+
+            if len(groups) < 2:
+                return {"error": "Insufficient groups for comparison"}
+
+            group_data = [data[data[group_col] == g][value_col] for g in groups]
+
+            if len(groups) == 2:
+                stat, p = ttest_ind(*group_data)
+                test_type = "Independent t-test"
+                effect_size = self.calculate_cohens_d(group_data[0], group_data[1])
+            else:
+                stat, p = f_oneway(*group_data)
+                test_type = "ANOVA"
+                effect_size = None
+
+            return {
+                "test_type": test_type,
+                "test_statistic": stat,
+                "p_value": p,
+                "effect_size": effect_size,
+                "interpretation": self.interpret_p_value(p)
+            }
+        except Exception as e:
+            logger.error(f"Hypothesis Testing Failed: {str(e)}")
+            return {"error": f"Hypothesis Testing Failed: {str(e)}"}
+
+    @staticmethod
+    def calculate_cohens_d(x: pd.Series, y: pd.Series) -> Optional[float]:
+        """Calculate Cohen's d for effect size."""
+        try:
+            mean_diff = abs(x.mean() - y.mean())
+            pooled_std = np.sqrt((x.var() + y.var()) / 2)
+            return mean_diff / pooled_std
+        except Exception as e:
+            logger.error(f"Error calculating Cohen's d: {str(e)}")
+            return None
+
+    @staticmethod
+    def interpret_p_value(p: float) -> str:
+        """Interpret the p-value."""
+        if p < 0.001:
+            return "Very strong evidence against H0"
+        elif p < 0.01:
+            return "Strong evidence against H0"
+        elif p < 0.05:
+            return "Evidence against H0"
+        elif p < 0.1:
+            return "Weak evidence against H0"
+        else:
+            return "No significant evidence against H0"
+
+class LogisticRegressionTrainer(DataAnalyzer):
+    """Logistic Regression Model Trainer."""
+    def invoke(self, data: pd.DataFrame, target_col: str, columns: List[str], **kwargs) -> Dict[str, Any]:
+        try:
+            X = data[columns]
+            y = data[target_col]
+            X_train, X_test, y_train, y_test = train_test_split(
+                X, y, test_size=0.2, random_state=42
+            )
+            model = LogisticRegression(max_iter=1000)
+            model.fit(X_train, y_train)
+            y_pred = model.predict(X_test)
+            accuracy = accuracy_score(y_test, y_pred)
+            return {
+                "model_type": "Logistic Regression",
+                "accuracy": accuracy,
+                "model_params": model.get_params()
+            }
+        except Exception as e:
+            logger.error(f"Logistic Regression Model Error: {str(e)}")
+            return {"error": f"Logistic Regression Model Error: {str(e)}"}
+
+# ---------------------- Business Logic Layer ---------------------------
+
+class ClinicalRule(BaseModel):
+    """Defines a clinical rule."""
+    name: str
+    condition: str
+    action: str
+    severity: str  # low, medium, or high
+
+class ClinicalRulesEngine:
+    """Executes rules against patient data."""
+    def __init__(self):
+        self.rules: Dict[str, ClinicalRule] = {}
+
+    def add_rule(self, rule: ClinicalRule):
+        self.rules[rule.name] = rule
+
+    def execute_rules(self, data: pd.DataFrame) -> Dict[str, Any]:
+        results = {}
+        for rule_name, rule in self.rules.items():
+            try:
+                # Using safe_eval instead of eval for security
+                rule_matched = self.safe_eval(rule.condition, {"df": data})
+                results[rule_name] = {
+                    "rule_matched": rule_matched,
+                    "action": rule.action if rule_matched else None,
+                    "severity": rule.severity if rule_matched else None
+                }
+            except Exception as e:
+                logger.error(f"Error executing rule '{rule_name}': {str(e)}")
+                results[rule_name] = {
+                    "rule_matched": False,
+                    "error": str(e),
+                    "severity": None
+                }
+        return results
+
+    @staticmethod
+    def safe_eval(expr, variables):
+        """
+        Safely evaluate an expression using AST parsing.
+        Only allows certain node types to prevent execution of arbitrary code.
+        """
+        allowed_nodes = (
+            ast.Expression, ast.BoolOp, ast.BinOp, ast.UnaryOp, ast.Compare,
+            ast.Call, ast.Name, ast.Load, ast.Constant, ast.Num, ast.Str,
+            ast.List, ast.Tuple, ast.Dict
+        )
+        try:
+            node = ast.parse(expr, mode='eval')
+            for subnode in ast.walk(node):
+                if not isinstance(subnode, allowed_nodes):
+                    raise ValueError(f"Unsupported expression: {expr}")
+            return eval(compile(node, '<string>', mode='eval'), {"__builtins__": None}, variables)
+        except Exception as e:
+            logger.error(f"safe_eval error: {str(e)}")
+            raise ValueError(f"Invalid expression: {e}")
+
+class ClinicalKPI(BaseModel):
+    """Define a clinical KPI."""
+    name: str
+    calculation: str
+    threshold: Optional[float] = None
+
+class ClinicalKPIMonitoring:
+    """Calculates KPIs based on data."""
+    def __init__(self):
+        self.kpis: Dict[str, ClinicalKPI] = {}
+
+    def add_kpi(self, kpi: ClinicalKPI):
+        self.kpis[kpi.name] = kpi
+
+    def calculate_kpis(self, data: pd.DataFrame) -> Dict[str, Any]:
+        results = {}
+        for kpi_name, kpi in self.kpis.items():
+            try:
+                # Using safe_eval instead of eval for security
+                kpi_value = self.safe_eval(kpi.calculation, {"df": data})
+                status = self.evaluate_threshold(kpi_value, kpi.threshold)
+                results[kpi_name] = {
+                    "value": kpi_value,
+                    "threshold": kpi.threshold,
+                    "status": status
+                }
+            except Exception as e:
+                logger.error(f"Error calculating KPI '{kpi_name}': {str(e)}")
+                results[kpi_name] = {"error": str(e)}
+        return results
+
+    @staticmethod
+    def evaluate_threshold(value: Any, threshold: Optional[float]) -> Optional[str]:
+        if threshold is None:
+            return None
+        try:
+            return "Above Threshold" if value > threshold else "Below Threshold"
+        except TypeError:
+            return "Threshold Evaluation Not Applicable"
+
+    @staticmethod
+    def safe_eval(expr, variables):
+        """
+        Safely evaluate an expression using AST parsing.
+        Only allows certain node types to prevent execution of arbitrary code.
+        """
+        allowed_nodes = (
+            ast.Expression, ast.BoolOp, ast.BinOp, ast.UnaryOp, ast.Compare,
+            ast.Call, ast.Name, ast.Load, ast.Constant, ast.Num, ast.Str,
+            ast.List, ast.Tuple, ast.Dict
+        )
+        try:
+            node = ast.parse(expr, mode='eval')
+            for subnode in ast.walk(node):
+                if not isinstance(subnode, allowed_nodes):
+                    raise ValueError(f"Unsupported expression: {expr}")
+            return eval(compile(node, '<string>', mode='eval'), {"__builtins__": None}, variables)
+        except Exception as e:
+            logger.error(f"safe_eval error: {str(e)}")
+            raise ValueError(f"Invalid expression: {e}")
+
+class DiagnosisSupport(ABC):
+    """Abstract class for implementing clinical diagnoses."""
+    @abstractmethod
+    def diagnose(
+        self, 
+        data: pd.DataFrame, 
+        target_col: str, 
+        columns: List[str], 
+        diagnosis_key: str = "diagnosis", 
+        **kwargs
+    ) -> pd.DataFrame:
+        pass
+
+class SimpleDiagnosis(DiagnosisSupport):
+    """Provides a simple diagnosis example, based on the Logistic regression model."""
+    def __init__(self):
+        self.model_trainer: LogisticRegressionTrainer = LogisticRegressionTrainer()
+
+    def diagnose(
+        self, 
+        data: pd.DataFrame, 
+        target_col: str, 
+        columns: List[str], 
+        diagnosis_key: str = "diagnosis", 
+        **kwargs
+    ) -> pd.DataFrame:
+        try:
+            result = self.model_trainer.invoke(data, target_col=target_col, columns=columns)
+            if "accuracy" in result:
+                return pd.DataFrame({
+                    diagnosis_key: [f"Model Accuracy: {result['accuracy']:.2%}"],
+                    "model": [result["model_type"]]
+                })
+            else:
+                return pd.DataFrame({
+                    diagnosis_key: [f"Diagnosis failed: {result.get('error', 'Unknown error')}"]
+                })
+        except Exception as e:
+            logger.error(f"Error during diagnosis: {str(e)}")
+            return pd.DataFrame({
+                diagnosis_key: [f"Error during diagnosis: {e}"]
+            })
+
+class TreatmentRecommendation(ABC):
+    """Abstract class for treatment recommendations."""
+    @abstractmethod
+    def recommend(
+        self, 
+        data: pd.DataFrame,  
+        condition_col: str, 
+        treatment_col: str, 
+        recommendation_key: str = "recommendation", 
+        **kwargs
+    ) -> pd.DataFrame:
+        pass
+
+class BasicTreatmentRecommendation(TreatmentRecommendation):
+    """A placeholder class for basic treatment recommendations."""
+    def recommend(
+        self, 
+        data: pd.DataFrame, 
+        condition_col: str, 
+        treatment_col: str, 
+        recommendation_key: str = "recommendation", 
+        **kwargs
+    ) -> pd.DataFrame:
+        if condition_col not in data.columns or treatment_col not in data.columns:
+            logger.warning(f"Condition or Treatment columns not found: {condition_col}, {treatment_col}")
+            return pd.DataFrame({
+                recommendation_key: ["Condition or Treatment columns not found!"]
+            })
+        
+        treatment = data[data[condition_col] == "High"][treatment_col].to_list()
+        if treatment:
+            return pd.DataFrame({
+                recommendation_key: [f"Treatment recommended for High risk patients: {treatment}"]
+            })
+        else:
+            return pd.DataFrame({
+                recommendation_key: ["No treatment recommendation found!"]
+            })
+
+# ---------------------- Medical Knowledge Base ---------------------------
+
+class MedicalKnowledgeBase(ABC):
+    """Abstract class for Medical Knowledge."""
+    @abstractmethod
+    def search_medical_info(self, query: str, pub_email: str = "") -> str:
+        pass
+
+class SimpleMedicalKnowledge(MedicalKnowledgeBase):
+    """Enhanced Medical Knowledge Class using OpenAI GPT-4."""
+    def __init__(self, nlp_model):
+        self.nlp = nlp_model  # Using the loaded spaCy model
+
+    def search_medical_info(self, query: str, pub_email: str = "") -> str:
+        """
+        Uses OpenAI's GPT-4 to fetch medical information based on the user's query.
+        """
+        logger.info(f"Received medical query: {query}")
+        try:
+            # Preprocess the query (e.g., entity recognition)
+            doc = self.nlp(query.lower())
+            entities = [ent.text for ent in doc.ents]
+            processed_query = " ".join(entities) if entities else query.lower()
+
+            logger.info(f"Processed query: {processed_query}")
+
+            # Create a prompt for GPT-4
+            prompt = f"""
+            You are a medical assistant. Provide a comprehensive and accurate response to the following medical query:
+
+            Query: {processed_query}
+
+            Please ensure the information is clear, concise, and evidence-based.
+            """
+
+            # Make the API request to OpenAI GPT-4
+            response = openai.ChatCompletion.create(
+                model="gpt-4",
+                messages=[
+                    {"role": "system", "content": "You are a helpful medical assistant."},
+                    {"role": "user", "content": prompt}
+                ],
+                max_tokens=500,
+                temperature=0.7,
+            )
+
+            # Extract the answer from the response
+            answer = response.choices[0].message['content'].strip()
+
+            logger.info("Successfully retrieved data from OpenAI GPT-4.")
+
+            # Fetch PubMed abstract related to the query
+            pubmed_abstract = self.fetch_pubmed_abstract(processed_query, pub_email)
+
+            # Format the response
+            return f"**Based on your query:** {answer}\n\n**PubMed Abstract:**\n\n{pubmed_abstract}"
+
+        except RateLimitError as e:
+            logger.error(f"Rate Limit Exceeded: {str(e)}")
+            return "Rate limit exceeded. Please try again later."
+        except InvalidRequestError as e:
+            logger.error(f"Invalid Request: {str(e)}")
+            return f"Invalid request: {str(e)}"
+        except APIError as e:
+            logger.error(f"OpenAI API Error: {str(e)}")
+            return f"OpenAI API Error: {str(e)}"
+        except Exception as e:
+            logger.error(f"Medical Knowledge Search Failed: {str(e)}")
+            return f"Medical Knowledge Search Failed: {str(e)}"
+
+    def fetch_pubmed_abstract(self, query: str, email: str) -> str:
+        """
+        Searches PubMed for abstracts related to the query.
+        """
+        try:
+            if not email:
+                logger.warning("PubMed abstract retrieval skipped: Email not provided.")
+                return "No PubMed abstract available: Email not provided."
+
+            Entrez.email = email
+            handle = Entrez.esearch(db="pubmed", term=query, retmax=1, sort='relevance')
+            record = Entrez.read(handle)
+            handle.close()
+            logger.info(f"PubMed search for query '{query}' returned IDs: {record['IdList']}")
+
+            if record["IdList"]:
+                handle = Entrez.efetch(db="pubmed", id=record["IdList"][0], rettype="abstract", retmode="text")
+                abstract = handle.read()
+                handle.close()
+                logger.info(f"Fetched PubMed abstract for ID {record['IdList'][0]}")
+                return abstract
+            else:
+                logger.info(f"No PubMed abstracts found for query '{query}'.")
+                return "No abstracts found for this query on PubMed."
+        except Exception as e:
+            logger.error(f"Error searching PubMed: {e}")
+            return f"Error searching PubMed: {e}"
+
+# ---------------------- Forecasting Engine ---------------------------
+
+class ForecastingEngine(ABC):
+    """Abstract class for forecasting."""
+    @abstractmethod
+    def predict(self, data: pd.DataFrame, **kwargs) -> pd.DataFrame:
+        pass
+
+class SimpleForecasting(ForecastingEngine):
+    """Simple forecasting engine."""
+    def predict(self, data: pd.DataFrame, period: int = 7, **kwargs) -> pd.DataFrame:
+        # Placeholder for actual forecasting logic
+        return pd.DataFrame({"forecast": [f"Forecast for the next {period} days"]})
+
+# ---------------------- Insights and Reporting Layer ---------------------------
+
+class AutomatedInsights:
+    """Generates automated insights based on selected analyses."""
+    def __init__(self):
+        self.analyses: Dict[str, DataAnalyzer] = {
+            "EDA": AdvancedEDA(),
+            "temporal": TemporalAnalyzer(),
+            "distribution": DistributionVisualizer(),
+            "hypothesis": HypothesisTester(),
+            "model": LogisticRegressionTrainer()
+        }
+
+    def generate_insights(self, data: pd.DataFrame, analysis_names: List[str], **kwargs) -> Dict[str, Any]:
+        results = {}
+        for name in analysis_names:
+            analyzer = self.analyses.get(name)
+            if analyzer:
+                try:
+                    results[name] = analyzer.invoke(data=data, **kwargs)
+                except Exception as e:
+                    logger.error(f"Error in analysis '{name}': {str(e)}")
+                    results[name] = {"error": str(e)}
+            else:
+                logger.warning(f"Analysis '{name}' not found.")
+                results[name] = {"error": "Analysis not found"}
+        return results
+
+class Dashboard:
+    """Handles the creation and display of the dashboard."""
+    def __init__(self):
+        self.layout: Dict[str, str] = {}
+
+    def add_visualisation(self, vis_name: str, vis_type: str):
+        self.layout[vis_name] = vis_type
+
+    def display_dashboard(self, data_dict: Dict[str, pd.DataFrame]):
+        st.header("Dashboard")
+        for vis_name, vis_type in self.layout.items():
+            st.subheader(vis_name)
+            df = data_dict.get(vis_name)
+            if df is not None:
+                if vis_type == "table":
+                    st.table(df)
+                elif vis_type == "plot":
+                    if len(df.columns) > 1:
+                        fig = plt.figure()
+                        sns.lineplot(data=df)
+                        st.pyplot(fig)
+                    else:
+                        st.write("Please select a DataFrame with more than 1 column for plotting.")
+            else:
+                st.write("Data Not Found")
+
+class AutomatedReports:
+    """Manages automated report definitions and generation."""
+    def __init__(self):
+        self.report_definitions: Dict[str, str] = {}
+
+    def create_report_definition(self, report_name: str, definition: str):
+        self.report_definitions[report_name] = definition
+
+    def generate_report(self, report_name: str, data: Dict[str, pd.DataFrame]) -> Dict[str, Any]:
+        if report_name not in self.report_definitions:
+            return {"error": "Report name not found"}
+        report_content = {
+            "Report Name": report_name,
+            "Report Definition": self.report_definitions[report_name],
+            "Data": {df_name: df.to_dict() for df_name, df in data.items()}
+        }
+        return report_content
+
+# ---------------------- Data Acquisition Layer ---------------------------
+
+class DataSource(ABC):
+    """Base class for data sources."""
+    @abstractmethod
+    def connect(self) -> None:
+        """Connect to the data source."""
+        pass
+
+    @abstractmethod
+    def fetch_data(self, query: str, **kwargs) -> pd.DataFrame:
+        """Fetch the data based on a specific query."""
+        pass
+
+class CSVDataSource(DataSource):
+    """Data source for CSV files."""
+    def __init__(self, file_path: io.BytesIO):
+        self.file_path = file_path
+        self.data: Optional[pd.DataFrame] = None
+
+    def connect(self):
+        self.data = pd.read_csv(self.file_path)
+
+    def fetch_data(self, query: str = None, **kwargs) -> pd.DataFrame:
+        if self.data is None:
+            raise Exception("No connection is made, call connect()")
+        return self.data
+
+class DatabaseSource(DataSource):
+    """Data source for SQL Databases."""
+    def __init__(self, connection_string: str, database_type: str):
+        self.connection_string = connection_string
+        self.database_type = database_type.lower()
+        self.connection = None
+
+    def connect(self):
+        if self.database_type == "sql":
+            # Placeholder for actual SQL connection logic
+            self.connection = "Connected to SQL Database"
+        else:
+            raise Exception(f"Database type '{self.database_type}' is not supported.")
+
+    def fetch_data(self, query: str, **kwargs) -> pd.DataFrame:
+        if self.connection is None:
+            raise Exception("No connection is made, call connect()")
+        # Placeholder for data fetching logic
+        return pd.DataFrame({"result": [f"Fetched data based on query: {query}"]})
+
+class DataIngestion:
+    """Handles data ingestion from various sources."""
+    def __init__(self):
+        self.sources: Dict[str, DataSource] = {}
+
+    def add_source(self, source_name: str, source: DataSource):
+        self.sources[source_name] = source
+
+    def ingest_data(self, source_name: str, query: str = None, **kwargs) -> pd.DataFrame:
+        if source_name not in self.sources:
+            raise Exception(f"Source '{source_name}' not found.")
+        source = self.sources[source_name]
+        source.connect()
+        return source.fetch_data(query, **kwargs)
+
+class DataModel(BaseModel):
+    """Defines a data model."""
+    name: str
+    kpis: List[str] = Field(default_factory=list)
+    dimensions: List[str] = Field(default_factory=list)
+    custom_calculations: Optional[Dict[str, str]] = None
+    relations: Optional[Dict[str, str]] = None  # Example: {"table1": "table2"}
+
+    def to_json(self) -> str:
+        return json.dumps(self.dict())
+
+    @staticmethod
+    def from_json(json_str: str) -> 'DataModel':
+        return DataModel(**json.loads(json_str))
+
+class DataModelling:
+    """Manages data models."""
+    def __init__(self):
+        self.models: Dict[str, DataModel] = {}
+
+    def add_model(self, model: DataModel):
+        self.models[model.name] = model
+
+    def get_model(self, model_name: str) -> DataModel:
+        if model_name not in self.models:
+            raise Exception(f"Model '{model_name}' not found.")
+        return self.models[model_name]
+
+# ---------------------- Main Streamlit Application ---------------------------
+
+def main():
+    """Main function to run the Streamlit app."""
+    st.title("🏥 AI-Powered Clinical Intelligence Hub")
+
+    # Initialize Session State
+    initialize_session_state()
+
+    # Sidebar for Data Management
+    with st.sidebar:
+        data_management_section()
+
+    # Main Content
+    if st.session_state.data:
+        col1, col2 = st.columns([1, 3])
+
+        with col1:
+            dataset_metadata_section()
+
+        with col2:
+            main_tabs_section()
+
+def initialize_session_state():
+    """Initialize necessary components in Streamlit's session state."""
+    if 'data' not in st.session_state:
+        st.session_state.data = {}  # Store pd.DataFrame under a name
+    if 'data_ingestion' not in st.session_state:
+        st.session_state.data_ingestion = DataIngestion()
+    if 'data_modelling' not in st.session_state:
+        st.session_state.data_modelling = DataModelling()
+    if 'clinical_rules' not in st.session_state:
+        st.session_state.clinical_rules = ClinicalRulesEngine()
+    if 'kpi_monitoring' not in st.session_state:
+        st.session_state.kpi_monitoring = ClinicalKPIMonitoring()
+    if 'forecasting_engine' not in st.session_state:
+        st.session_state.forecasting_engine = SimpleForecasting()
+    if 'automated_insights' not in st.session_state:
+        st.session_state.automated_insights = AutomatedInsights()
+    if 'dashboard' not in st.session_state:
+        st.session_state.dashboard = Dashboard()
+    if 'automated_reports' not in st.session_state:
+        st.session_state.automated_reports = AutomatedReports()
+    if 'diagnosis_support' not in st.session_state:
+        st.session_state.diagnosis_support = SimpleDiagnosis()
+    if 'treatment_recommendation' not in st.session_state:
+        st.session_state.treatment_recommendation = BasicTreatmentRecommendation()
+    if 'knowledge_base' not in st.session_state:
+        st.session_state.knowledge_base = SimpleMedicalKnowledge(nlp_model=nlp)
+    if 'pub_email' not in st.session_state:
+        st.session_state.pub_email = PUB_EMAIL  # Load PUB_EMAIL from environment variables
+
+def data_management_section():
+    """Handles the data management section in the sidebar."""
+    st.header("⚙️ Data Management")
+    data_source_selection = st.selectbox("Select Data Source Type", ["CSV", "SQL Database"])
+
+    if data_source_selection == "CSV":
+        handle_csv_upload()
+    elif data_source_selection == "SQL Database":
+        handle_sql_database()
+
+    if st.button("Ingest Data"):
+        ingest_data_action()
+
+def handle_csv_upload():
+    """Handles CSV file uploads."""
+    uploaded_file = st.file_uploader("Upload research dataset (CSV)", type=["csv"])
+    if uploaded_file:
+        source_name = st.text_input("Data Source Name")
+        if source_name:
+            try:
+                csv_source = CSVDataSource(file_path=uploaded_file)
+                st.session_state.data_ingestion.add_source(source_name, csv_source)
+                st.success(f"Uploaded {uploaded_file.name} as '{source_name}'.")
+            except Exception as e:
+                st.error(f"Error loading dataset: {e}")
+
+def handle_sql_database():
+    """Handles SQL database connections."""
+    conn_str = st.text_input("Enter connection string for SQL DB")
+    if conn_str:
+        source_name = st.text_input("Data Source Name")
+        if source_name:
+            try:
+                sql_source = DatabaseSource(connection_string=conn_str, database_type="sql")
+                st.session_state.data_ingestion.add_source(source_name, sql_source)
+                st.success(f"Added SQL DB Source '{source_name}'.")
+            except Exception as e:
+                st.error(f"Error loading database source: {e}")
+
+def ingest_data_action():
+    """Performs data ingestion from the selected source."""
+    if st.session_state.data_ingestion.sources:
+        source_name_to_fetch = st.selectbox("Select Data Source to Ingest", list(st.session_state.data_ingestion.sources.keys()))
+        query = st.text_area("Optional Query to Fetch data")
+        if source_name_to_fetch:
+            with st.spinner("Ingesting data..."):
+                try:
+                    data = st.session_state.data_ingestion.ingest_data(source_name_to_fetch, query)
+                    st.session_state.data[source_name_to_fetch] = data
+                    st.success(f"Ingested data from '{source_name_to_fetch}'.")
+                except Exception as e:
+                    st.error(f"Ingestion failed: {e}")
+    else:
+        st.error("No data source added. Please add a data source.")
+
+def dataset_metadata_section():
+    """Displays metadata for the selected dataset."""
+    st.subheader("Dataset Metadata")
+    data_source_keys = list(st.session_state.data.keys())
+    selected_data_key = st.selectbox("Select Dataset", data_source_keys)
+
+    if selected_data_key:
+        data = st.session_state.data[selected_data_key]
+        metadata = {
+            "Variables": list(data.columns),
+            "Time Range": {
+                col: {
+                    "min": data[col].min(),
+                    "max": data[col].max()
+                } for col in data.select_dtypes(include='datetime').columns
+            },
+            "Size": f"{data.memory_usage().sum() / 1e6:.2f} MB"
+        }
+        st.json(metadata)
+        # Store the selected dataset key in session state for use in analysis
+        st.session_state.selected_data_key = selected_data_key
+
+def main_tabs_section():
+    """Creates and manages the main tabs in the application."""
+    analysis_tab, clinical_logic_tab, insights_tab, reports_tab, knowledge_tab = st.tabs([
+        "Data Analysis",
+        "Clinical Logic",
+        "Insights",
+        "Reports",
+        "Medical Knowledge"
+    ])
+
+    with analysis_tab:
+        data_analysis_section()
+
+    with clinical_logic_tab:
+        clinical_logic_section()
+
+    with insights_tab:
+        insights_section()
+
+    with reports_tab:
+        reports_section()
+
+    with knowledge_tab:
+        medical_knowledge_section()
+
+def data_analysis_section():
+    """Handles the Data Analysis tab."""
+    selected_data_key = st.session_state.get('selected_data_key', None)
+    if not selected_data_key:
+        st.warning("Please select a dataset from the metadata section.")
+        return
+
+    data = st.session_state.data[selected_data_key]
+    analysis_type = st.selectbox("Select Analysis Mode", [
+        "Exploratory Data Analysis",
+        "Temporal Pattern Analysis",
+        "Comparative Statistics",
+        "Distribution Analysis",
+        "Train Logistic Regression Model"
+    ])
+
+    if analysis_type == "Exploratory Data Analysis":
+        perform_eda(data)
+    elif analysis_type == "Temporal Pattern Analysis":
+        perform_temporal_analysis(data)
+    elif analysis_type == "Comparative Statistics":
+        perform_comparative_statistics(data)
+    elif analysis_type == "Distribution Analysis":
+        perform_distribution_analysis(data)
+    elif analysis_type == "Train Logistic Regression Model":
+        perform_logistic_regression_training(data)
+
+def perform_eda(data: pd.DataFrame):
+    """Performs Exploratory Data Analysis."""
+    analyzer = AdvancedEDA()
+    eda_result = analyzer.invoke(data=data)
+    st.subheader("Data Quality Report")
+    st.json(eda_result)
+
+def perform_temporal_analysis(data: pd.DataFrame):
+    """Performs Temporal Pattern Analysis."""
+    time_cols = data.select_dtypes(include='datetime').columns
+    num_cols = data.select_dtypes(include=np.number).columns
+
+    if len(time_cols) == 0:
+        st.warning("No datetime columns available for temporal analysis.")
+        return
+
+    time_col = st.selectbox("Select Temporal Variable", time_cols)
+    value_col = st.selectbox("Select Analysis Variable", num_cols)
+
+    if time_col and value_col:
+        analyzer = TemporalAnalyzer()
+        result = analyzer.invoke(data=data, time_col=time_col, value_col=value_col)
+        if "visualization" in result and result["visualization"]:
+            st.image(f"data:image/png;base64,{result['visualization']}", use_column_width=True)
+        st.json(result)
+
+def perform_comparative_statistics(data: pd.DataFrame):
+    """Performs Comparative Statistics."""
+    categorical_cols = data.select_dtypes(include=['category', 'object']).columns
+    numeric_cols = data.select_dtypes(include=np.number).columns
+
+    if len(categorical_cols) == 0:
+        st.warning("No categorical columns available for hypothesis testing.")
+        return
+
+    if len(numeric_cols) == 0:
+        st.warning("No numerical columns available for hypothesis testing.")
+        return
+
+    group_col = st.selectbox("Select Grouping Variable", categorical_cols)
+    value_col = st.selectbox("Select Metric Variable", numeric_cols)
+
+    if group_col and value_col:
+        analyzer = HypothesisTester()
+        result = analyzer.invoke(data=data, group_col=group_col, value_col=value_col)
+        st.subheader("Statistical Test Results")
+        st.json(result)
+
+def perform_distribution_analysis(data: pd.DataFrame):
+    """Performs Distribution Analysis."""
+    numeric_cols = data.select_dtypes(include=np.number).columns.tolist()
+    selected_cols = st.multiselect("Select Variables for Distribution Analysis", numeric_cols)
+
+    if selected_cols:
+        analyzer = DistributionVisualizer()
+        img_data = analyzer.invoke(data=data, columns=selected_cols)
+        if not img_data.startswith("Visualization Error"):
+            st.image(f"data:image/png;base64,{img_data}", use_column_width=True)
+        else:
+            st.error(img_data)
+    else:
+        st.info("Please select at least one numerical column to visualize.")
+
+def perform_logistic_regression_training(data: pd.DataFrame):
+    """Trains a Logistic Regression model."""
+    numeric_cols = data.select_dtypes(include=np.number).columns.tolist()
+    target_col = st.selectbox("Select Target Variable", data.columns.tolist())
+    selected_cols = st.multiselect("Select Feature Variables", numeric_cols)
+
+    if selected_cols and target_col:
+        analyzer = LogisticRegressionTrainer()
+        result = analyzer.invoke(data=data, target_col=target_col, columns=selected_cols)
+        st.subheader("Logistic Regression Model Results")
+        st.json(result)
+    else:
+        st.warning("Please select both target and feature variables for model training.")
+
+def clinical_logic_section():
+    """Handles the Clinical Logic tab."""
+    st.header("Clinical Logic")
+    
+    # Clinical Rules Management
+    st.subheader("Clinical Rules")
+    rule_name = st.text_input("Enter Rule Name")
+    condition = st.text_area("Enter Rule Condition (use 'df' for DataFrame)", 
+                             help="Example: df['blood_pressure'] > 140")
+    action = st.text_area("Enter Action to be Taken on Rule Match")
+    severity = st.selectbox("Enter Severity for the Rule", ["low", "medium", "high"])
+
+    if st.button("Add Clinical Rule"):
+        if rule_name and condition and action and severity:
+            try:
+                rule = ClinicalRule(
+                    name=rule_name, 
+                    condition=condition, 
+                    action=action, 
+                    severity=severity
+                )
+                st.session_state.clinical_rules.add_rule(rule)
+                st.success("Added Clinical Rule successfully.")
+            except Exception as e:
+                st.error(f"Error in rule definition: {e}")
+        else:
+            st.error("Please fill in all fields to add a clinical rule.")
+
+    # Clinical KPI Management
+    st.subheader("Clinical KPI Definition")
+    kpi_name = st.text_input("Enter KPI Name")
+    kpi_calculation = st.text_area("Enter KPI Calculation (use 'df' for DataFrame)", 
+                                    help="Example: df['patient_count'].sum()")
+    threshold = st.text_input("Enter Threshold for KPI (Optional)", help="Leave blank if not applicable")
+
+    if st.button("Add Clinical KPI"):
+        if kpi_name and kpi_calculation:
+            try:
+                threshold_value = float(threshold) if threshold else None
+                kpi = ClinicalKPI(
+                    name=kpi_name, 
+                    calculation=kpi_calculation, 
+                    threshold=threshold_value
+                )
+                st.session_state.kpi_monitoring.add_kpi(kpi)
+                st.success(f"Added KPI '{kpi_name}' successfully.")
+            except ValueError:
+                st.error("Threshold must be a numeric value.")
+            except Exception as e:
+                st.error(f"Error creating KPI: {e}")
+        else:
+            st.error("Please provide both KPI name and calculation.")
+
+    # Execute Clinical Rules and Calculate KPIs
+    selected_data_key = st.selectbox("Select Dataset for Clinical Logic", list(st.session_state.data.keys()))
+    if selected_data_key:
+        data = st.session_state.data[selected_data_key]
+        if st.button("Execute Clinical Rules"):
+            with st.spinner("Executing Clinical Rules..."):
+                result = st.session_state.clinical_rules.execute_rules(data)
+                st.json(result)
+        if st.button("Calculate Clinical KPIs"):
+            with st.spinner("Calculating Clinical KPIs..."):
+                result = st.session_state.kpi_monitoring.calculate_kpis(data)
+                st.json(result)
+    else:
+        st.warning("Please ingest data to execute clinical rules and calculate KPIs.")
+
+def insights_section():
+    """Handles the Insights tab."""
+    st.header("Automated Insights")
+
+    selected_data_key = st.selectbox("Select Dataset for Insights", list(st.session_state.data.keys()))
+    if not selected_data_key:
+        st.warning("Please select a dataset to generate insights.")
+        return
+
+    data = st.session_state.data[selected_data_key]
+    available_analyses = ["EDA", "temporal", "distribution", "hypothesis", "model"]
+    selected_analyses = st.multiselect("Select Analyses for Insights", available_analyses)
+
+    if st.button("Generate Automated Insights"):
+        if selected_analyses:
+            with st.spinner("Generating Insights..."):
+                results = st.session_state.automated_insights.generate_insights(
+                    data, analysis_names=selected_analyses
+                )
+                st.json(results)
+        else:
+            st.warning("Please select at least one analysis to generate insights.")
+
+    # Diagnosis Support
+    st.subheader("Diagnosis Support")
+    target_col = st.selectbox("Select Target Variable for Diagnosis", data.columns.tolist())
+    numeric_cols = data.select_dtypes(include=np.number).columns.tolist()
+    selected_feature_cols = st.multiselect("Select Feature Variables for Diagnosis", numeric_cols)
+
+    if st.button("Generate Diagnosis"):
+        if target_col and selected_feature_cols:
+            with st.spinner("Generating Diagnosis..."):
+                result = st.session_state.diagnosis_support.diagnose(
+                    data, target_col=target_col, columns=selected_feature_cols, diagnosis_key="diagnosis_result"
+                )
+                st.json(result)
+        else:
+            st.error("Please select both target and feature variables for diagnosis.")
+
+    # Treatment Recommendation
+    st.subheader("Treatment Recommendation")
+    condition_col = st.selectbox("Select Condition Column for Treatment Recommendation", data.columns.tolist())
+    treatment_col = st.selectbox("Select Treatment Column for Treatment Recommendation", data.columns.tolist())
+
+    if st.button("Generate Treatment Recommendation"):
+        if condition_col and treatment_col:
+            with st.spinner("Generating Treatment Recommendation..."):
+                result = st.session_state.treatment_recommendation.recommend(
+                    data, condition_col=condition_col, treatment_col=treatment_col, recommendation_key="treatment_recommendation"
+                )
+                st.json(result)
+        else:
+            st.error("Please select both condition and treatment columns.")
+
+def reports_section():
+    """Handles the Reports tab."""
+    st.header("Automated Reports")
+    
+    # Create Report Definition
+    st.subheader("Create Report Definition")
+    report_name = st.text_input("Report Name")
+    report_def = st.text_area("Report Definition", help="Describe the structure and content of the report.")
+
+    if st.button("Create Report Definition"):
+        if report_name and report_def:
+            st.session_state.automated_reports.create_report_definition(report_name, report_def)
+            st.success("Report definition created successfully.")
+        else:
+            st.error("Please provide both report name and definition.")
+
+    # Generate Report
+    st.subheader("Generate Report")
+    report_names = list(st.session_state.automated_reports.report_definitions.keys())
+    if report_names:
+        report_name_to_generate = st.selectbox("Select Report to Generate", report_names)
+        if st.button("Generate Report"):
+            with st.spinner("Generating Report..."):
+                report = st.session_state.automated_reports.generate_report(report_name_to_generate, st.session_state.data)
+                if "error" not in report:
+                    st.header(f"Report: {report['Report Name']}")
+                    st.markdown(f"**Definition:** {report['Report Definition']}")
+                    for df_name, df_content in report["Data"].items():
+                        st.subheader(f"Data: {df_name}")
+                        st.dataframe(pd.DataFrame(df_content))
+                else:
+                    st.error(report["error"])
+    else:
+        st.info("No report definitions found. Please create a report definition first.")
+
+def medical_knowledge_section():
+    """Handles the Medical Knowledge tab."""
+    st.header("Medical Knowledge")
+    query = st.text_input("Enter your medical question here:")
+
+    if st.button("Search"):
+        if query.strip():
+            with st.spinner("Searching..."):
+                result = st.session_state.knowledge_base.search_medical_info(
+                    query, pub_email=st.session_state.pub_email
+                )
+                st.markdown(result)
+        else:
+            st.error("Please enter a medical question to search.")
+
+if __name__ == "__main__":
+    main()