Update mcp/ctgov.py
Browse files- mcp/ctgov.py +65 -15
mcp/ctgov.py
CHANGED
@@ -1,21 +1,71 @@
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Docs: https://clinicaltrials.gov/api/gui/ref/api_urls#v2
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Provides `search_trials_v2` which returns a list of study dicts.
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"""
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async def
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params = {
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"query":
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"pageSize":
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"fields": "nctId,briefTitle,phase,status,startDate,conditions,interventions",
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}
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#!/usr/bin/env python3
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"""
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ClinicalTrials.gov helper – v2 primary, v1 fallback.
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"""
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from __future__ import annotations
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import asyncio, httpx, urllib.parse
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from functools import lru_cache
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from typing import List, Dict, Any
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# v2 REST
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_V2 = "https://clinicaltrials.gov/api/v2/studies"
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# legacy v1 (read-only but still works)
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_V1 = "https://clinicaltrials.gov/api/query/study_fields"
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_HEADERS = {
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"User-Agent": (
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"Mozilla/5.0 (Windows NT 10.0; Win64; x64) "
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"AppleWebKit/537.36 (KHTML, like Gecko) "
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"Chrome/125.0 Safari/537.36"
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),
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"Accept": "application/json",
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}
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_TIMEOUT = 15
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_MAX = 50 # hard cap
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async def _get(url: str, params: Dict[str, Any]) -> httpx.Response:
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async with httpx.AsyncClient(timeout=_TIMEOUT, headers=_HEADERS) as cli:
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return await cli.get(url, params=params)
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async def _try_v2(term: str, limit: int) -> List[Dict]:
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params = {
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"query" : term,
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"pageSize": limit,
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"fields" : "nctId,briefTitle,phase,status,startDate,conditions,interventions",
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}
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r = await _get(_V2, params)
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if r.status_code == 200:
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return r.json().get("studies", [])
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if r.status_code in {403, 429, 500, 503}:
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raise RuntimeError("v2 unavailable")
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r.raise_for_status() # other 4xx
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async def _try_v1(term: str, limit: int) -> List[Dict]:
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params = {
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"expr" : term,
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"fields" : "NCTId,BriefTitle,Phase,OverallStatus,StartDate,Condition,InterventionName",
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"max_rnk" : limit,
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"min_rnk" : 1,
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"fmt" : "json",
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}
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r = await _get(_V1, params)
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r.raise_for_status()
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return r.json().get("StudyFieldsResponse", {}).get("StudyFields", [])
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@lru_cache(maxsize=512)
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async def search_trials(term: str, *, max_studies: int = 10) -> List[Dict]:
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"""
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Return up to *max_studies* trial dicts; v2 first, v1 fallback.
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"""
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limit = max(1, min(max_studies, _MAX))
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# v2 with back-off: 2s → 4s
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for delay in (0, 2, 4):
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try:
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if delay:
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await asyncio.sleep(delay)
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return await _try_v2(term, limit)
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except RuntimeError:
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continue
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# fallback to legacy endpoint
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return await _try_v1(term, limit)
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