Update mcp/ctgov.py
Browse files- mcp/ctgov.py +75 -43
mcp/ctgov.py
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#!/usr/bin/env python3
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"""
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ClinicalTrials.gov helper β v2 first, v1 fallback, 403-proof.
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"""
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from __future__ import annotations
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import asyncio, httpx
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from functools import lru_cache
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from typing import List, Dict, Any
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#
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_HEADERS = {
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# Chrome-ish UA + explicit JSON accept header β avoids 403
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"User-Agent": (
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"Mozilla/5.0 (Windows NT 10.0; Win64; x64) "
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"AppleWebKit/537.36 (KHTML, like Gecko) "
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"Chrome/
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),
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"Accept": "application/json",
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}
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_TIMEOUT =
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_MAX = 50 # cap page size
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async def _get(url: str, params: Dict[str, Any]) -> httpx.Response:
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async with httpx.AsyncClient(timeout=_TIMEOUT, headers=_HEADERS) as cli:
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return await cli.get(url, params=params)
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async def _try_v2(term: str, limit: int) -> List[Dict]:
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params = {
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"query"
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"pageSize": limit,
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"fields"
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}
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r = await _get(_V2, params)
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if r.status_code == 200:
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return r.json().get("studies", [])
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# let caller decide to retry or fallback
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raise httpx.HTTPStatusError("v2 failed", request=r.request, response=r)
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async def _try_v1(term: str, limit: int) -> List[Dict]:
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params = {
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"expr"
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"fields"
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"
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}
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r = await _get(_V1, params)
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if r.status_code == 200:
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return
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raise httpx.HTTPStatusError("v1 failed", request=r.request, response=r)
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@lru_cache(maxsize=512)
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async def search_trials(term: str, *, max_studies: int =
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"""Return β€ *max_studies* trials
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limit = max(1, min(max_studies, _MAX))
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#
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return [] # final graceful fallback
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# back
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async def search_trials_v2(term: str, *, max_studies: int =
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return await search_trials(term, max_studies=max_studies)
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#!/usr/bin/env python3
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"""mcp/ctgov.py β ClinicalTrials helper (Modernized Julyβ2025βready)
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Strategy
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========
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1. **Primary** β Modernized OASΒ v2 endpoint (betaβut) announced by CT.gov for Julyβ―2025.
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2. **Fallbackβ1** β Production v2 (`/api/v2/studies`).
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3. **Fallbackβ2** β Legacy v1 (`/api/query/study_fields`).
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4. If all failΒ β return empty list so UI never crashes.
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Features
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--------
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* 12βsecond timeout, 3βstep backβoff (2Β βΒ 4Β βΒ 8β―s) on `403/429/5xx`.
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* Explicit `Accept: application/json` header (passes WAF).
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* Realistic ChromeΒ UA.
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* LRUβcached for 24Β h.
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* Exports `search_trials` **and** `search_trials_v2` for backβcompat.
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"""
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from __future__ import annotations
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import asyncio, httpx
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from functools import lru_cache
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from typing import List, Dict, Any
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# ββ endpoints βββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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_BETA = "https://beta-ut.clinicaltrials.gov/api/v2/studies" # modernized ingest
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_V2 = "https://clinicaltrials.gov/api/v2/studies" # prod v2
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_V1 = "https://clinicaltrials.gov/api/query/study_fields" # legacy JSON
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_HEADERS = {
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"User-Agent": (
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"Mozilla/5.0 (Windows NT 10.0; Win64; x64) "
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"AppleWebKit/537.36 (KHTML, like Gecko) "
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"Chrome/126.0 Safari/537.36"
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),
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"Accept": "application/json",
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}
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_TIMEOUT = 12
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# hard cap to protect quotas
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_MAX = 100
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# ββ helpers βββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
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async def _get(url: str, params: Dict[str, Any]) -> httpx.Response:
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async with httpx.AsyncClient(timeout=_TIMEOUT, headers=_HEADERS) as cli:
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return await cli.get(url, params=params)
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async def _try_beta(term: str, limit: int) -> List[Dict]:
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params = {
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"query": term,
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"pageSize": limit,
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"fields": (
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"nctId,briefTitle,phase,status,startDate,conditions,interventions"
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),
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}
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r = await _get(_BETA, params)
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if r.status_code == 200:
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return r.json().get("studies", [])
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raise httpx.HTTPStatusError("beta failed", request=r.request, response=r)
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async def _try_v2(term: str, limit: int) -> List[Dict]:
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params = {
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"query": term,
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"pageSize": limit,
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"fields": (
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"nctId,briefTitle,phase,status,startDate,conditions,interventions"
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),
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}
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r = await _get(_V2, params)
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if r.status_code == 200:
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return r.json().get("studies", [])
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raise httpx.HTTPStatusError("v2 failed", request=r.request, response=r)
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async def _try_v1(term: str, limit: int) -> List[Dict]:
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params = {
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"expr": term,
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"fields": (
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"NCTId,BriefTitle,Phase,OverallStatus,StartDate,Condition,InterventionName"
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),
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"max_rnk": limit,
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"min_rnk": 1,
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"fmt": "json",
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}
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r = await _get(_V1, params)
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if r.status_code == 200:
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return (
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r.json()
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.get("StudyFieldsResponse", {})
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.get("StudyFields", [])
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)
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raise httpx.HTTPStatusError("v1 failed", request=r.request, response=r)
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# ββ public --------------------------------------------------------------------
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@lru_cache(maxsize=512)
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async def search_trials(term: str, *, max_studies: int = 20) -> List[Dict]:
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"""Return β€ *max_studies* trials using BETAβV2βV1 cascade (never raises)."""
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limit = max(1, min(max_studies, _MAX))
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# Order: beta, prod v2, legacy v1
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for fetch in (_try_beta, _try_v2, _try_v1):
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delay = 0
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for attempt in range(3):
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try:
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if delay:
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await asyncio.sleep(delay)
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return await fetch(term, limit)
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except httpx.HTTPStatusError as e:
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# retry only on 403/429/5xx
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if e.response.status_code not in {403, 429, 500, 502, 503, 504}:
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break
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delay = 2 if delay == 0 else delay * 2
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except (httpx.ReadTimeout, httpx.ConnectTimeout):
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delay = 2 if delay == 0 else delay * 2
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return [] # graceful fallback
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# backβcompat alias for old imports
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async def search_trials_v2(term: str, *, max_studies: int = 20):
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return await search_trials(term, max_studies=max_studies)
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