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# app.py
import gradio as gr
from genesis.pipeline import research_once, DEMO_QUERIES
def run_pipeline_ui(query):
"""Run the full GENESIS-AI pipeline for the given query."""
try:
result = research_once(query)
summary_md = f"### Research Summary\n{result['summary']}"
cites_md = "### Citations\n"
if result["citations"]:
for c in result["citations"]:
cites_md += f"- [{c['type']} {c['id'] or ''}]({c['url']})\n"
else:
cites_md += "_No citations found._"
struct_md = "### Molecular Structures\n"
if result["structures"]:
for s in result["structures"]:
struct_md += f"- **{s['name']}** — [View]({s['url']})\n"
else:
struct_md += "_No structures found._"
img_md = ""
if result["visual_image_url"]:
img_md = f"### Visual Diagram\n"
audio_component = None
if result["audio_url"]:
audio_component = result["audio_url"]
return summary_md, cites_md, struct_md, img_md, audio_component
except Exception as e:
return f"**Error:** {e}", "", "", "", None
with gr.Blocks(title="GENESIS-AI — Synthetic Biology Research Engine", theme="default") as demo:
gr.Markdown("# 🧬 GENESIS-AI — Synthetic Biology Research Engine")
gr.Markdown("Ask about synthetic biology, drug design, CRISPR, biosensors, and more.")
with gr.Row():
query_input = gr.Textbox(label="Enter your research topic", placeholder="e.g., AI-driven biosensor design for early cancer detection")
run_btn = gr.Button("Run Research", variant="primary")
with gr.Row():
summary_output = gr.Markdown()
with gr.Row():
cites_output = gr.Markdown()
with gr.Row():
struct_output = gr.Markdown()
with gr.Row():
img_output = gr.Markdown()
with gr.Row():
audio_output = gr.Audio()
run_btn.click(
run_pipeline_ui,
inputs=[query_input],
outputs=[summary_output, cites_output, struct_output, img_output, audio_output]
)
gr.Markdown("## Demo Queries")
demo_gallery = gr.Dataset(
components=[gr.Textbox()],
samples=[[q] for q in DEMO_QUERIES],
type="values",
label="Click a demo query to run it"
)
demo_gallery.click(
run_pipeline_ui,
inputs=[query_input],
outputs=[summary_output, cites_output, struct_output, img_output, audio_output]
)
if __name__ == "__main__":
demo.launch(server_name="0.0.0.0", server_port=7860, share=True)
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