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# app.py
import gradio as gr
from genesis.pipeline import research_once
from genesis.molecule_viewer import get_molecule_view
# Preloaded demo queries for instant wow-factor
DEMO_QUERIES = [
"CRISPR living therapeutics in clinical trials since 2020",
"AI-designed enzymes for plastic degradation — literature + pathways",
"Synthetic biology startups in oncology — funding map",
"Metabolic pathway for artemisinin biosynthesis in yeast",
"Oncolytic virus engineering — biosecurity risk analysis"
]
# ---- UI Functions ----
def run_research(query):
result = research_once(query)
return (
result["summary"],
"\n".join([f"{c['type']}: {c['url']}" for c in result["citations"]]),
result["visual_image_url"] or "No image",
result["audio_url"] or "No audio"
)
def explore_molecule(pdb_or_gene):
return get_molecule_view(pdb_or_gene)
# ---- UI Layout ----
with gr.Blocks(css=".gradio-container {background-color: #0a0a0a; color: white;}") as demo:
gr.Markdown(
"<h1 style='color:#00ff99;text-shadow:0 0 20px #ff6600;'>🧬 GENESIS-AI: Synthetic Biology Command Center</h1>"
)
with gr.Tab("🔍 Literature & Pathways"):
gr.Markdown("### Select a demo query or enter your own:")
with gr.Row():
for q in DEMO_QUERIES:
gr.Button(q).click(fn=run_research, inputs=[gr.Textbox(value=q)], outputs=[
gr.Textbox(label="Summary"),
gr.Textbox(label="Citations"),
gr.Image(label="Generated Diagram"),
gr.Audio(label="Narrated Summary")
])
user_query = gr.Textbox(label="Custom Query")
submit_btn = gr.Button("Run Research")
summary = gr.Textbox(label="Summary")
citations = gr.Textbox(label="Citations")
diagram = gr.Image(label="Generated Diagram")
audio = gr.Audio(label="Narrated Summary")
submit_btn.click(fn=run_research, inputs=user_query, outputs=[summary, citations, diagram, audio])
with gr.Tab("🧪 3D Molecule Explorer"):
mol_input = gr.Textbox(label="Enter PDB ID or Gene/Protein Name")
mol_btn = gr.Button("Load Structure")
mol_view = gr.HTML(label="3D Structure")
mol_btn.click(fn=explore_molecule, inputs=mol_input, outputs=mol_view)
demo.launch()
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