mgbam commited on
Commit
5b6700c
·
verified ·
1 Parent(s): 1c6cb4b

Update genesis/api_clients/bioportal_api.py

Browse files
genesis/api_clients/bioportal_api.py CHANGED
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+ # genesis/api_clients/bioportal_api.py
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+ import requests
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+ import os
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+
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+ BIOPORTAL_API_KEY = os.getenv("BIOPORTAL_API_KEY")
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+ BASE_URL = "https://data.bioontology.org"
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+
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+ def search_bioportal(query: str):
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+ """Search BioPortal for ontologies, classes, or terms."""
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+ url = f"{BASE_URL}/search"
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+ params = {"q": query, "apikey": BIOPORTAL_API_KEY}
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+ r = requests.get(url, params=params)
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+ r.raise_for_status()
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+ return r.json()
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+
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+ def get_ontology_list():
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+ """Get list of available ontologies."""
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+ url = f"{BASE_URL}/ontologies"
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+ params = {"apikey": BIOPORTAL_API_KEY}
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+ r = requests.get(url, params=params)
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+ r.raise_for_status()
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+ return r.json()