Update app.py

app.py

@@ -1,91 +1,64 @@
-import gradio as gr
-from genesis.pipeline import research_once
-from genesis.visualization import generate_pathway_graph, generate_funding_network
-
-# Preloaded killer demo queries
-DEMO_QUERIES = [
-    "CRISPR living therapeutics in clinical trials since 2020",
-    "AI-designed enzymes for plastic degradation — literature + pathways",
-    "Synthetic biology startups in oncology — funding map",
-    "Metabolic pathway for artemisinin biosynthesis in yeast",
-    "Oncolytic virus engineering — biosecurity risk analysis"
-]
-
-def run_literature_review(query):
-    report = research_once(query)
-    return (
-        report["summary"],
-        report["citations"],
-        report["structures"],
-        report["visual_image_url"],
-        report["audio_url"]
-    )
-
-def run_pathway_graph():
-    entities = ["CRISPR", "Cas9", "DNA Repair", "Therapeutic Delivery"]
-    relationships = [
-        {"source": "CRISPR", "target": "Cas9", "type": "guides"},
-        {"source": "Cas9", "target": "DNA Repair", "type": "triggers"},
-        {"source": "DNA Repair", "target": "Therapeutic Delivery", "type": "enables"}
-    ]
-    return generate_pathway_graph(entities, relationships)
-
-def run_funding_network():
-    companies = [
-        {"name": "SynBioCorp", "investors": "Sequoia Capital, Andreessen Horowitz"},
-        {"name": "BioTheraX", "investors": "SoftBank, ARCH Venture Partners"}
-    ]
-    return generate_funding_network(companies)
-
-with gr.Blocks(theme=gr.themes.Soft(primary_hue="emerald", secondary_hue="lime")) as app:
-    gr.Markdown("# 🧬 GENESIS-AI — Synthetic Biology Command Center")
-    gr.Markdown("A next-generation **lab instrument** for literature review, pathway mapping, funding analysis, and biosecurity insights.")
-
-    with gr.Row():
-        query_input = gr.Textbox(label="Enter your research query", placeholder="e.g., CRISPR living therapeutics in clinical trials since 2020", lines=2)
-        run_button = gr.Button("🚀 Run Literature Review", variant="primary")
-
-    gr.Markdown("### 🔹 Or click a demo query:")
-    with gr.Row():
-        demo_btns = []
-        for dq in DEMO_QUERIES:
-            btn = gr.Button(dq)
-            btn.click(fn=lambda q=dq: run_literature_review(q),
-                      inputs=[],
-                      outputs=["summary_box", "citations_box", "structures_box", "image_out", "audio_out"])
-            demo_btns.append(btn)
-
-    with gr.Tab("📄 Summary"):
-        summary_box = gr.Textbox(label="AI-Generated Summary", lines=15, interactive=False)
-
-    with gr.Tab("📚 Citations"):
-        citations_box = gr.JSON(label="Citations")
-
-    with gr.Tab("🧪 Structures"):
-        structures_box = gr.JSON(label="3D Molecular Structures")
-
-    with gr.Tab("🖼 Diagram"):
-        image_out = gr.Image(label="Generated Diagram")
-
-    with gr.Tab("🔊 Narration"):
-        audio_out = gr.Audio(label="Narrated Summary", type="filepath")
-
-    gr.Markdown("## 🧭 Additional Tools")
-
-    with gr.Row():
-        pathway_btn = gr.Button("🧬 Generate Pathway Graph")
-        pathway_img = gr.Image(label="Pathway Graph")
-        pathway_btn.click(fn=run_pathway_graph, inputs=[], outputs=pathway_img)
-
-        funding_btn = gr.Button("💰 Generate Funding Network")
-        funding_img = gr.Image(label="Funding Network")
-        funding_btn.click(fn=run_funding_network, inputs=[], outputs=funding_img)
-
-    # Link main run button
-    run_button.click(
-        fn=run_literature_review,
-        inputs=query_input,
-        outputs=[summary_box, citations_box, structures_box, image_out, audio_out]
-    )
-
-app.launch()
+:root {
+    --green: #00ff9d;
+    --orange: #ff9900;
+    --bg-dark: #0a0a0a;
+}
+
+body, html {
+    margin: 0;
+    padding: 0;
+    overflow: hidden;
+    background-color: var(--bg-dark);
+    font-family: 'Orbitron', sans-serif;
+}
+
+.fullscreen-bg {
+    position: relative;
+    width: 100vw;
+    height: 100vh;
+    background: radial-gradient(circle at center, #001a12, #000000);
+}
+
+#molecule-canvas {
+    position: absolute;
+    top: 0; left: 0;
+    width: 100%; height: 100%;
+    z-index: 0;
+}
+
+.centered {
+    position: absolute;
+    top: 50%; left: 50%;
+    transform: translate(-50%, -50%);
+    text-align: center;
+    z-index: 1;
+}
+
+.title {
+    font-size: 3em;
+    color: var(--green);
+    text-shadow: 0 0 20px var(--green);
+}
+
+#enter-btn {
+    padding: 15px 40px;
+    font-size: 1.5em;
+    background: var(--green);
+    color: black;
+    border: none;
+    cursor: pointer;
+    border-radius: 8px;
+    box-shadow: 0 0 20px var(--green);
+    animation: pulse 1.5s infinite;
+}
+
+#enter-btn:hover {
+    background: var(--orange);
+    box-shadow: 0 0 20px var(--orange);
+}
+
+@keyframes pulse {
+    0% { box-shadow: 0 0 10px var(--green); }
+    50% { box-shadow: 0 0 30px var(--green); }
+    100% { box-shadow: 0 0 10px var(--green); }
+}