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Update utils/api_integrations.py

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  1. utils/api_integrations.py +23 -0
utils/api_integrations.py CHANGED
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+ # genesis/utils/api_helpers.py
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+ from genesis.api_clients import chembl_api, pubmed_api, bioportal_api, umls_api, ncbi_api
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+
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+ def get_molecule_info(query):
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+ return {
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+ "search": chembl_api.search_molecule(query),
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+ "details": chembl_api.get_molecule_details(query)
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+ }
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+
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+ def get_pubmed_articles(query):
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+ search = pubmed_api.search_pubmed(query)
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+ ids = search.get("esearchresult", {}).get("idlist", [])
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+ details = pubmed_api.fetch_pubmed_details(ids) if ids else None
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+ return {"search": search, "details": details}
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+
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+ def get_bioportal_results(query):
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+ return bioportal_api.search_bioportal(query)
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+
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+ def get_umls_results(query):
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+ return umls_api.search_umls(query)
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+
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+ def get_ncbi_gene(query):
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+ return ncbi_api.search_gene(query)