implementing predict smiles
Browse files
app.py
CHANGED
@@ -205,11 +205,12 @@ if image_file is not None:
|
|
205 |
molecule['stereo_atoms'] = stereo_atoms
|
206 |
molecule['charge_atoms'] = charge_atoms
|
207 |
mol_graphs.append(molecule)
|
208 |
-
base_path
|
209 |
-
|
210 |
-
|
211 |
-
|
212 |
-
|
|
|
213 |
save_mol_to_file(molecule,'molfile')
|
214 |
mol = Chem.MolFromMolFile('molfile',sanitize=False)
|
215 |
problematic = 0
|
|
|
205 |
molecule['stereo_atoms'] = stereo_atoms
|
206 |
molecule['charge_atoms'] = charge_atoms
|
207 |
mol_graphs.append(molecule)
|
208 |
+
#base_path="./"
|
209 |
+
#base_path = pathlib.Path(args.data_path)
|
210 |
+
#image_dir = base_path.joinpath("images")
|
211 |
+
#smiles_dir = base_path.joinpath("smiles")
|
212 |
+
#impath = image_dir.joinpath(f"{image_idx}.png")
|
213 |
+
#smilespath = smiles_dir.joinpath(f"{image_idx}.txt")
|
214 |
save_mol_to_file(molecule,'molfile')
|
215 |
mol = Chem.MolFromMolFile('molfile',sanitize=False)
|
216 |
problematic = 0
|