netrosec commited on
Commit
8d0ee6a
·
1 Parent(s): 5c94a9d

Update app.py

Browse files

added mat number..

Files changed (1) hide show
  1. app.py +15 -34
app.py CHANGED
@@ -3,22 +3,22 @@ import pandas as pd
3
  import plotly.graph_objects as go
4
 
5
  data = {
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- 'years_after_diagnosis': [5, 8, 7, 7, 8, 7, 5, 6, 7, 5, 6, 4, 3, 4, 5, 8, 5],
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- 'age_at_diagnosis': [54, 41, 65, 85, 60, 66, 61, 50, 77, 64, 55, 52, 60, 51, 45, 54, 48],
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- 'stage level': [6, 6, 5, 5, 10, 8, 6, 7, 8, 8, 3, 6, 3, 8, 6, 8, 6],
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- 'status': [1, 1, 0, 1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 0, 0]
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  }
11
 
12
  df = pd.DataFrame(data)
13
 
14
  def plot_probability_chart(years_after_diagnosis, age_at_diagnosis, stage_level, chemotherapy, brachtherapy,
15
- chemoradiation, radiotherapy, radiation, menopause, MENO_post, HISTOLOGY, CM_1, CM_2, CM_3, Status):
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  match = df.loc[
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  (df['years_after_diagnosis'] == years_after_diagnosis) &
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  (df['age_at_diagnosis'] == age_at_diagnosis) &
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  (df['stage level'] == stage_level)
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  ]
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-
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  if len(match) == 0:
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  probability_alive = 0.5
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  probability_dead = 0.5
@@ -45,32 +45,8 @@ def plot_probability_chart(years_after_diagnosis, age_at_diagnosis, stage_level,
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  xaxis_title="Status",
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  yaxis_title="Probability",
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  )
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- return fig
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-
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- if len(match) == 0:
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- return "No matching patient record found"
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- status = match.iloc[0]['status']
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- label = ["Alive", "Dead"]
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- if status == 0:
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- probability_alive = 0.2
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- probability_dead = 0.8
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- else:
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- probability_alive = 0.7
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- probability_dead = 0.3
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-
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- fig = go.Figure(
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- go.Bar(
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- x=label,
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- y=[probability_alive, probability_dead]
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- )
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- )
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- fig.update_layout(
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- title="Survival Probability Chart",
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- xaxis_title="Status",
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- yaxis_title="Probability",
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- )
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- return fig
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  inputs = [
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  gr.inputs.Slider(minimum=0, maximum=10, step=1, default=5, label='years_after_diagnosis'),
@@ -86,8 +62,13 @@ inputs = [
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  gr.inputs.Slider(minimum=0, maximum=2, step=1, default=2, label='HISTOLOGY'),
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  gr.inputs.Checkbox(label='CM_1'),
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  gr.inputs.Checkbox(label='CM_2'),
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- gr.inputs.Checkbox(label='CM_3'),
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- gr.inputs.Radio(["Alive", "Dead"], label="Status")
91
  ]
92
 
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- gr.Interface(fn=plot_probability_chart, inputs=inputs, outputs="plot").launch()
 
 
 
 
 
 
 
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  import plotly.graph_objects as go
4
 
5
  data = {
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+ 'years_after_diagnosis': [5, 8, 7, 7, 8, 7, 5, 6, 8, 5],
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+ 'age_at_diagnosis': [54, 41, 65, 85, 60, 66, 61, 55, 54, 48],
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+ 'stage level': [6, 6, 5, 5, 10, 8, 6, 3, 8, 6],
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+ 'status': [1, 1, 0, 1, 1, 1, 0, 0, 0, 0]
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  }
11
 
12
  df = pd.DataFrame(data)
13
 
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  def plot_probability_chart(years_after_diagnosis, age_at_diagnosis, stage_level, chemotherapy, brachtherapy,
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+ chemoradiation, radiotherapy, radiation, menopause, MENO_post, HISTOLOGY, CM_1, CM_2, CM_3):
16
  match = df.loc[
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  (df['years_after_diagnosis'] == years_after_diagnosis) &
18
  (df['age_at_diagnosis'] == age_at_diagnosis) &
19
  (df['stage level'] == stage_level)
20
  ]
21
+
22
  if len(match) == 0:
23
  probability_alive = 0.5
24
  probability_dead = 0.5
 
45
  xaxis_title="Status",
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  yaxis_title="Probability",
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  )
 
 
 
 
48
 
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+ return f"Patient Status: {label[status]}, Probability Score: {probability_alive if status == 1 else probability_dead}", fig
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
50
 
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  inputs = [
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  gr.inputs.Slider(minimum=0, maximum=10, step=1, default=5, label='years_after_diagnosis'),
 
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  gr.inputs.Slider(minimum=0, maximum=2, step=1, default=2, label='HISTOLOGY'),
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  gr.inputs.Checkbox(label='CM_1'),
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  gr.inputs.Checkbox(label='CM_2'),
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+ gr.inputs.Checkbox(label='CM_3')
 
66
  ]
67
 
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+ title = "Cervical Cancer Survival Predictor"
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+ subtitle = "Ojie, Deborah Voke (PG/2021/274546)"
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+ description = f"<small><center>{subtitle}</center></small>"
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+
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+ interface = gr.Interface(fn=plot_probability_chart, inputs=inputs, outputs=["markdown", "plot"],
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+ title=title, description=description, examples=None)
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+ interface.launch()