Refactor code formatting for improved readability and consistency in analysis and interface functions

app.py

@@ -303,9 +303,9 @@ def analyse_abstracts(query_abstract: str, compare_abstract: dict) -> str:
         return "Invalid compare_abstract format. Expected a non-empty string."
 
     messages = [
-    {
-        "role": "user",
-        "content": f"""You are trained in evaluating conceptual and methodological connections between research papers. Please **identify and analyze the reasoning-based links** between the following two papers:
+        {
+            "role": "user",
+            "content": f"""You are trained in evaluating conceptual and methodological connections between research papers. Please **identify and analyze the reasoning-based links** between the following two papers:
 
 Paper 1 Abstract:
 {query_abstract}
@@ -364,8 +364,8 @@ Return a valid JSON object in the following structure:
 
 Return only the JSON object. All key names and string values must be in double quotes.
 """,
-    },
-]
+        },
+    ]
 
     # Generate analysis
     try:
@@ -635,7 +635,9 @@ def create_interface():
                     show_copy_button=True,
                     key="analysis_output",
                 )
-                with gr.Accordion(label="Feedback and Flagging", open=True, visible=False) as analysis_feedback_accordion:
+                with gr.Accordion(
+                    label="Feedback and Flagging", open=True, visible=False
+                ) as analysis_feedback_accordion:
                     gr.Markdown(
                         """
                         This connection analysis was generated by an AI model trained to reason about conceptual links between research papers.
@@ -652,7 +654,7 @@ def create_interface():
 
         # Hidden UI elements for API endpoint
         abstract_input_hidden = gr.Textbox(visible=False, key="abstract_hidden")
-        synergistic_papers_output = gr.JSON(visible=False, key="synergistic_papers_output")
+        synergistic_papers_output = gr.JSON(visible=False, label="Synergistic Papers", key="synergistic_papers_output")
         search_btn_hidden = gr.Button(visible=False, key="search_hidden")
 
         # API endpoint for find_synergistic_papers
@@ -674,7 +676,14 @@ def create_interface():
             data_path + "/flagged_paper_matches",
         )
         analysis_logger.setup(
-            [abstract_input, paper_details_output, analysis_output, analysis_feedback, analysis_expert, analysis_comment],
+            [
+                abstract_input,
+                paper_details_output,
+                analysis_output,
+                analysis_feedback,
+                analysis_expert,
+                analysis_comment,
+            ],
             data_path + "/flagged_analyses",
         )
 
@@ -704,7 +713,11 @@ def create_interface():
             outputs=[selected_paper_state],
             api_name=False,
         ).then(
-            lambda: (gr.update(visible=False), gr.update(visible=False), gr.update(visible=False)),  # Hide analyze button and feedback accordions
+            lambda: (
+                gr.update(visible=False),
+                gr.update(visible=False),
+                gr.update(visible=False),
+            ),  # Hide analyze button and feedback accordions
             outputs=[analyze_btn, paper_feedback_accordion, analysis_feedback_accordion],
             api_name=False,
         ).then(
@@ -748,7 +761,14 @@ def create_interface():
 
         flag_analysis_btn.click(
             lambda *args: analysis_logger.flag(list(args)),
-            inputs=[abstract_input, paper_details_output, analysis_output, analysis_feedback, analysis_expert, analysis_comment],
+            inputs=[
+                abstract_input,
+                paper_details_output,
+                analysis_output,
+                analysis_feedback,
+                analysis_expert,
+                analysis_comment,
+            ],
             preprocess=False,
             api_name=False,
         )