nonzeroexit commited on
Commit
15020eb
·
verified ·
1 Parent(s): 8310453

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +4 -9
app.py CHANGED
@@ -1,7 +1,7 @@
1
  import gradio as gr
2
  import joblib
3
  import numpy as np
4
- import propy
5
  from sklearn.preprocessing import MinMaxScaler
6
 
7
  # Load trained SVM model and scaler (Ensure both files exist in the Space)
@@ -11,16 +11,11 @@ scaler = MinMaxScaler()
11
  def extract_features(sequence):
12
  """Calculate AAC, Dipeptide Composition, and normalize features."""
13
  # Calculate Amino Acid Composition (AAC)
14
- aac = propy.AAComposition.CalculateAAC(sequence)
15
-
16
- # Calculate Dipeptide Composition
17
- dipeptide_comp = propy.AAComposition.CalculateAADipeptideComposition(sequence)
18
-
19
- # Combine both features (AAC and Dipeptide Composition)
20
- features = np.concatenate((aac, dipeptide_comp))
21
 
22
  # Normalize with pre-trained scaler (avoid fitting new data)
23
- normalized_features = scaler.transform([features])
24
 
25
  return normalized_features
26
 
 
1
  import gradio as gr
2
  import joblib
3
  import numpy as np
4
+ from propy3 import AAComposition
5
  from sklearn.preprocessing import MinMaxScaler
6
 
7
  # Load trained SVM model and scaler (Ensure both files exist in the Space)
 
11
  def extract_features(sequence):
12
  """Calculate AAC, Dipeptide Composition, and normalize features."""
13
  # Calculate Amino Acid Composition (AAC)
14
+ aac = AAComposition.CalculateAADipeptideComposition(sequence)
15
+
 
 
 
 
 
16
 
17
  # Normalize with pre-trained scaler (avoid fitting new data)
18
+ normalized_features = scaler.transform([aac])
19
 
20
  return normalized_features
21