Update app.py
Browse files
app.py
CHANGED
@@ -66,7 +66,7 @@ def CTXGen(τ, g_num, length_range, progress=gr.Progress()):
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start_time = time.time()
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while count < gen_num:
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if is_stopped: # 检查是否停止
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return
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if time.time() - start_time > 1200:
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break
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@@ -84,7 +84,7 @@ def CTXGen(τ, g_num, length_range, progress=gr.Progress()):
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for i in range(length):
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if is_stopped: # 检查是否停止
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return
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_, idx_seq, idx_msa, attn_idx = get_paded_token_idx_gen(vocab_mlm, seq, new_seq)
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idx_seq = torch.tensor(idx_seq).unsqueeze(0).to(device)
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@@ -130,11 +130,19 @@ def CTXGen(τ, g_num, length_range, progress=gr.Progress()):
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cls_probability_all.append(cls_probability)
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act_pos_all.append(act_pos)
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act_probability_all.append(act_probability)
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out = pd.DataFrame({
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out.to_csv("output.csv", index=False, encoding='utf-8-sig')
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count += 1
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progress(count / gen_num, desc="Generating conotoxins...")
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# 使用 gr.Blocks 构建界面
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with gr.Blocks() as demo:
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@@ -147,11 +155,13 @@ with gr.Blocks() as demo:
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start_button = gr.Button("Start Generation")
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stop_button = gr.Button("Stop Generation")
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with gr.Row():
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status_text = gr.Textbox(label="Status")
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# 绑定事件
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start_button.click(CTXGen, inputs=[τ, g_num, length_range], outputs=[
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stop_button.click(stop_generation, outputs=status_text)
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# 启动 Gradio 应用
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start_time = time.time()
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while count < gen_num:
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if is_stopped: # 检查是否停止
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return pd.DataFrame(), f"Generation stopped. Generated {count} conotoxins."
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if time.time() - start_time > 1200:
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break
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for i in range(length):
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if is_stopped: # 检查是否停止
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return pd.DataFrame(), f"Generation stopped. Generated {count} conotoxins."
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_, idx_seq, idx_msa, attn_idx = get_paded_token_idx_gen(vocab_mlm, seq, new_seq)
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idx_seq = torch.tensor(idx_seq).unsqueeze(0).to(device)
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cls_probability_all.append(cls_probability)
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act_pos_all.append(act_pos)
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act_probability_all.append(act_probability)
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out = pd.DataFrame({
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'Generated_seq': generated_seqs_FINAL,
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'Subtype': cls_pos_all,
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'Subtype_probability': cls_probability_all,
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'Potency': act_pos_all,
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'Potency_probability': act_probability_all,
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'random_seed': seed
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})
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out.to_csv("output.csv", index=False, encoding='utf-8-sig')
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count += 1
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progress(count / gen_num, desc="Generating conotoxins...")
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yield out, f"Generated {count} conotoxins."
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return out, f"Generated {count} conotoxins."
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# 使用 gr.Blocks 构建界面
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with gr.Blocks() as demo:
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start_button = gr.Button("Start Generation")
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stop_button = gr.Button("Stop Generation")
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with gr.Row():
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output_df = gr.DataFrame(label="Generated Conotoxins")
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status_text = gr.Textbox(label="Status")
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with gr.Row():
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output_file = gr.File(label="Download generated conotoxins")
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# 绑定事件
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start_button.click(CTXGen, inputs=[τ, g_num, length_range], outputs=[output_df, status_text], live=True)
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stop_button.click(stop_generation, outputs=status_text)
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# 启动 Gradio 应用
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