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- # Technical Skills and Expertise
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- ## Deep Learning and Machine Learning
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- ### Core Frameworks
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- - **PyTorch**: Advanced proficiency in model development, custom layers, and distributed training
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- - **TensorFlow**: Experience with TensorFlow 2.x, Keras, and TensorFlow Serving
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- - **Hugging Face Transformers**: Fine-tuning, model deployment, and custom tokenizers
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- - **scikit-learn**: Classical ML algorithms, preprocessing, and model evaluation
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- ### Specialized Techniques
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- - **Transfer Learning**: Pre-trained model adaptation, domain adaptation
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- - **Attention Mechanisms**: Self-attention, cross-attention, multi-head attention
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- - **Adversarial Training**: GANs, adversarial autoencoders, robust training
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- - **Multi-task Learning**: Joint optimization, task balancing, shared representations
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- - **Meta-Learning**: Few-shot learning, model-agnostic meta-learning
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- ## Large Language Models and NLP
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- ### LLM Technologies
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- - **Parameter-Efficient Fine-tuning**: LoRA, QLoRA, AdaLoRA, Prefix tuning
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- - **Quantization**: GPTQ, GGUF, 8-bit and 4-bit quantization
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- - **Model Optimization**: Pruning, distillation, efficient architectures
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- - **Prompt Engineering**: Chain-of-thought, few-shot prompting, instruction tuning
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- ### NLP Applications
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- - **Text Generation**: Controlled generation, style transfer, summarization
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- - **Information Extraction**: Named entity recognition, relation extraction
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- - **Question Answering**: Reading comprehension, open-domain QA
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- - **Sentiment Analysis**: Aspect-based sentiment, emotion detection
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- ## Computer Vision and Medical Imaging
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- ### Vision Architectures
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- - **Convolutional Networks**: ResNet, DenseNet, EfficientNet, Vision Transformers
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- - **Object Detection**: YOLO, R-CNN family, DETR
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- - **Segmentation**: U-Net, Mask R-CNN, Segment Anything Model (SAM)
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- - **Medical Imaging**: Specialized architectures for histopathology, radiology
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- ### Image Processing
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- - **Preprocessing**: Normalization, augmentation, color space conversion
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- - **Feature Extraction**: SIFT, HOG, deep features
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- - **Registration**: Image alignment, geometric transformations
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- - **Quality Assessment**: Blur detection, artifact identification
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- ## Multimodal AI and Fusion
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- ### Multimodal Architectures
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- - **Vision-Language Models**: CLIP, BLIP, LLaVA, DALL-E
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- - **Fusion Strategies**: Early fusion, late fusion, attention-based fusion
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- - **Cross-modal Retrieval**: Image-text matching, semantic search
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- - **Multimodal Generation**: Text-to-image, image captioning
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- ### Data Integration
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- - **Heterogeneous Data**: Combining images, text, tabular data
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- - **Temporal Fusion**: Time-series integration, sequential modeling
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- - **Graph Neural Networks**: Relational data modeling, knowledge graphs
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- ## Retrieval-Augmented Generation (RAG)
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- ### Vector Databases
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- - **FAISS**: Efficient similarity search, index optimization
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- - **ChromaDB**: Document storage and retrieval
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- - **Weaviate**: Vector search with filtering
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- - **Milvus**: Scalable vector database management
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- ### Retrieval Techniques
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- - **Dense Retrieval**: Bi-encoder architectures, contrastive learning
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- - **Sparse Retrieval**: BM25, TF-IDF, keyword matching
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- - **Hybrid Search**: Combining dense and sparse methods
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- - **Re-ranking**: Cross-encoder models, relevance scoring
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- ### RAG Optimization
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- - **Chunk Strategies**: Document segmentation, overlap handling
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- - **Embedding Models**: Sentence transformers, domain-specific embeddings
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- - **Query Enhancement**: Query expansion, reformulation
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- - **Context Management**: Relevance filtering, context compression
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- ## Bioinformatics and Computational Biology
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- ### Genomics
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- - **Sequence Analysis**: Alignment algorithms, variant calling
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- - **Gene Expression**: RNA-seq analysis, differential expression
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- - **Pathway Analysis**: Enrichment analysis, network biology
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- - **Population Genetics**: GWAS, linkage analysis
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- ### Proteomics
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- - **Protein Structure**: Structure prediction, folding analysis
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- - **Mass Spectrometry**: Data processing, protein identification
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- - **Protein-Protein Interactions**: Network analysis, functional prediction
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- ### Systems Biology
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- - **Network Analysis**: Graph theory, centrality measures
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- - **Mathematical Modeling**: Differential equations, stochastic models
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- - **Multi-omics Integration**: Data fusion, pathway reconstruction
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- ## Cloud Computing and MLOps
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- ### Cloud Platforms
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- - **AWS**: EC2, S3, SageMaker, Lambda, ECS
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- - **Google Cloud**: Compute Engine, Cloud Storage, Vertex AI
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- - **Azure**: Virtual Machines, Blob Storage, Machine Learning Studio
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- ### MLOps Tools
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- - **Model Versioning**: MLflow, DVC, Weights & Biases
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- - **Containerization**: Docker, Kubernetes, container orchestration
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- - **CI/CD**: GitHub Actions, Jenkins, automated testing
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- - **Monitoring**: Model drift detection, performance monitoring
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- ### Distributed Computing
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- - **Parallel Processing**: Multi-GPU training, data parallelism
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- - **Cluster Computing**: Spark, Dask, distributed training
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- - **Resource Management**: SLURM, job scheduling, resource optimization
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- ## Programming and Software Development
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- ### Programming Languages
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- - **Python**: Advanced proficiency, scientific computing, web development
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- - **R**: Statistical analysis, bioinformatics packages, visualization
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- - **SQL**: Database design, query optimization, data warehousing
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- - **JavaScript/TypeScript**: Web development, Node.js, React
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- - **Bash/Shell**: System administration, automation scripts
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- ### Development Tools
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- - **Version Control**: Git, GitHub, collaborative development
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- - **IDEs**: VS Code, PyCharm, Jupyter notebooks
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- - **Documentation**: Sphinx, MkDocs, technical writing
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- - **Testing**: Unit testing, integration testing, test-driven development
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- ## Research and Academic Skills
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- ### Research Methodology
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- - **Experimental Design**: Hypothesis testing, statistical power analysis
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- - **Literature Review**: Systematic reviews, meta-analysis
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- - **Peer Review**: Journal reviewing, conference reviewing
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- - **Grant Writing**: Research proposals, funding applications
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- ### Communication
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- - **Technical Writing**: Research papers, documentation, tutorials
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- - **Presentations**: Conference talks, poster presentations
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- - **Teaching**: Course development, student mentoring
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- - **Collaboration**: Interdisciplinary research, team leadership