skipping invalid indexes

get_index.py

@@ -18,14 +18,18 @@ def get_engines(index_repo: str, model_repo: str):
     )
     sys.path.append(str(local_arch_path))
     from protein_index import (  # pylint: disable=import-error,import-outside-toplevel
-        ProteinSearchEngine,
+        ProteinSearchEngine, ProteinIndexError
     )
 
     subindex_paths = glob(str(index_path / "*/"))
     engines = {}
     for subindex_path in subindex_paths:
         subindex_name = os.path.basename(subindex_path)
-        engine = ProteinSearchEngine(data_path=Path(subindex_path))
-        if len(engine) > 10000:
-            engines[subindex_name] = engine
+        try:
+            engine = ProteinSearchEngine(data_path=Path(subindex_path))
+            if len(engine) > 1000:
+                engines[subindex_name] = engine
+        except ProteinIndexError:
+            ...
+
     return engines