notebooks/embedding_notebook.jl

### A Pluto.jl notebook ###
# v0.19.45

using Markdown
using InteractiveUtils

# ╔═╡ cdb6a532-59d8-11ef-253f-a1fb2ac43958
## 
using CSV, JLD2, DataFrames, OpenAI, StatsBase, Distances, TidierPlots, Markdown, PlutoUI, MLJ, InteractiveUtils

# ╔═╡ 1872c213-90af-4924-9abc-c670857e2cb5
cd("/home/swojcik/github/misinfo_detection")

# ╔═╡ 91f5f6b3-3cc8-4bdf-8386-715d49e6d83b
md"""
## Text Embedding Distance as Misinfo Detection

#### Method: 
- Take narrative summaries *as is* --> embed
- Take text from the labeled data --> embed
- Assign a misinfo narrative to each based on proximity to one of the narrative summaries (all text gets a misinfo narrative)
- Plot the distribution of distances by misinfo label 
- Select a semi-arbitrary cutoff point 
- Calculate model scores 
"""

# ╔═╡ 8aa21d7a-24ab-41c2-accd-cb3983108ea6
begin
	## Analysis: 
	# What is the distribution of distances by assigned narrative and label? 
	
	### UTILITIES ####
	# Define count function 
	function table(df::DataFrame, cols::Vector{Symbol})
	    combine(groupby(df, cols), nrow)
	end
	#########
	
	"""
	## Embeddings to recover narratives 
	narrative_embeddings = create_narrative_embeddings()
	"""
	function create_narrative_embeddings(regenerate=false)
	    if !regenerate && isfile("data/narrative_embeddings.jld2")
	        return load_object("data/narrative_embeddings.jld2")
	    end
	    @info "Regenerating narrative embeddings..."
	    narratives = CSV.read("data/Modified Misinformation Library.csv", DataFrame)
	    ## narrative Embeddings 
	    n_embeddings = create_embeddings(ENV["OPENAI_API_KEY"], narratives[!, "Misinformation Narrative"])
	    ## Add vector of embeddings to dataset 
	    narratives[!, "Embeddings"] = [x["embedding"] for x in n_embeddings.response["data"]]
	    # Save the embeddings
	    save_object("data/narrative_embeddings.jld2", narratives)
	    return narratives
	end
	
	"""
	# This is the testing data
	target_embeddings = create_test_embeddings()
	"""
	function create_test_embeddings(regenerate=false)
	    if !regenerate && isfile("data/test_embeddings.jld2")
	        return load_object("data/test_embeddings.jld2")
	    end
	    @info "Regenerating test embeddings..."
	    df_test = CSV.read("data/Indicator_Test.csv", DataFrame)
	    ## narrative Embeddings 
	    n_embeddings = create_embeddings(ENV["OPENAI_API_KEY"], df_test[!, "text"])
	    ## Add vector of embeddings to dataset 
	    df_test[!, "Embeddings"] = [x["embedding"] for x in n_embeddings.response["data"]]
	    # Save the embeddings
	    save_object("data/test_embeddings.jld2", df_test)
	    return df_test
	end
	
	"""
	### The embeddings for each example are along the rows, so they can be compared column-wise (fast)
	narrative_embeddings = create_narrative_embeddings()
	target_embeddings = create_test_embeddings()
	one_shot_classification!(narrative_embeddings, target_embeddings)
	## Show the results - text, closest narrative
	target_embeddings[:, ["text", "Closest Narrative", "label"]] |> first(5)
	"""
	function one_shot_classification!(narrative_embeddings, target_embeddings)
	    ## Matrix of embeddings
	    narrative_matrix = hcat(narrative_embeddings[:, "Embeddings"]...)
	    target_matrix = hcat(target_embeddings[:, "Embeddings"]...)
	    # Create a search function
	    function search(narrative_matrix, target_matrix)
	        distances = pairwise(CosineDist(), target_matrix, narrative_matrix, dims=2)
	        # get the index of the column with the smallest distance
	        narrative_index = argmin(distances, dims=2)
	        return narrative_index
	    end
	    # Search for the closest narrative for each test data
	    narrative_assignment = search(narrative_matrix, target_matrix)
	    target_embeddings[:, "Closest Narrative"] = [narrative_embeddings[x[2], "Misinformation Narrative"] for x in narrative_assignment[:, 1]]
	    return target_embeddings
	end
	
	function get_distances!(narrative_embeddings, target_embeddings)
	    ## Matrix of embeddings
	    narrative_matrix = hcat(narrative_embeddings[:, "Embeddings"]...)
	    target_matrix = hcat(target_embeddings[:, "Embeddings"]...)
	    # Create a search function
	    function embedding_distances(narrative_matrix, target_matrix)
	        distances = pairwise(CosineDist(), target_matrix, narrative_matrix, dims=2)
	        # get the index of the column with the smallest distance
	        return distances[argmin(distances, dims=2)][:, 1]
	    end
	    # Search for the closest narrative for each test data
	    target_embeddings[:, "Dist"] = embedding_distances(narrative_matrix, target_matrix)
	    return target_embeddings
	end
	
end

# ╔═╡ 2ba50521-2fed-4fc0-a140-6af8d2c57115
begin
	# Get the embeddings for the narratives
	narrative_embeddings = create_narrative_embeddings()
	target_embeddings = create_test_embeddings()
	one_shot_classification!(narrative_embeddings, target_embeddings)
	get_distances!(narrative_embeddings, target_embeddings)
	
	
end

# ╔═╡ ae0f994c-1e54-4a3f-9252-9e7d0df3cc04
md"""
## Distribution of distances by label
"""

# ╔═╡ 476da329-5c95-4825-98a9-70a490b0609c
begin
	# Plot the distribution of distances by narrative and label	
	## By Label 
	ggplot(target_embeddings, @aes(x = label, y = Dist)) +
	    geom_violin() + labs(x="Misinfo Label", y="Distance") #+ geom_hline()
	
	
end

# ╔═╡ 8deeb8eb-3072-4f1b-ba46-1ac6abb78091
md"""
!!! question "What Threshold?"
	*Distance threshold is set to .2 based on the histogram above*
"""

# ╔═╡ f5c1511a-7307-43e2-a69f-d01ffa15f700
begin
	### Assign MisinfoPred = true if distance is less than .2 
	
	target_embeddings[!, "MisinfoPred"] = target_embeddings[!, "Dist"] .< 0.2
	
	## Precision and Recall
	y_true = target_embeddings[!, "label"]
	y_pred = target_embeddings[!, "MisinfoPred"]
	#confusion_matrix(y_pred, y_true)
	model_scores = DataFrame(
	accuracy = accuracy(y_true, y_pred),
	true_positive_rate = true_positive_rate(y_true, y_pred),
	false_positive_rate = false_positive_rate(y_true, y_pred),
		
	)
	
	
end

# ╔═╡ 3905c150-ae5c-4173-9e9d-f3eed67a3642
md"""
### Text with the Smallest Distances
"""

# ╔═╡ c64f8299-3470-475a-b7f3-c72186df3973
## Top 10 closest narratives
target_embeddings |> 
    (data -> filter(:label => x -> x .== 1.0, data)) |> 
    (data -> sort(data, :Dist)) |>
    (data -> first(data, 10)) |> 
    (data -> select(data, ["text", "Closest Narrative", "Dist"]))

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uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.52.0+1"

[[deps.oneTBB_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493"
uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
version = "2021.12.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
version = "17.4.0+2"

[[deps.x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "2021.5.5+0"

[[deps.x265_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.5.0+0"
"""

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