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separado en dos local_exec docker y local_build_docker. Eliminado xai.py, que no es necesario aqui y da problemas
Browse files- dvats/xai.py +0 -964
- local_build_docker.sh +14 -0
- local_exec_docker.sh +17 -2
- r_shiny_app/global.R +3 -1
dvats/xai.py
CHANGED
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# AUTOGENERATED! DO NOT EDIT! File to edit: ../nbs/xai.ipynb.
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# %% auto 0
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__all__ = ['get_embeddings', 'get_dataset', 'umap_parameters', 'get_prjs', 'plot_projections', 'plot_projections_clusters',
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'calculate_cluster_stats', 'anomaly_score', 'detector', 'plot_anomaly_scores_distribution',
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'plot_clusters_with_anomalies', 'update_plot', 'plot_clusters_with_anomalies_interactive_plot',
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'get_df_selected', 'shift_datetime', 'get_dateformat', 'get_anomalies', 'get_anomaly_styles',
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'InteractiveAnomalyPlot', 'plot_save', 'plot_initial_config', 'merge_overlapping_windows',
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'InteractiveTSPlot', 'add_selected_features', 'add_windows', 'setup_style', 'toggle_trace',
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'set_features_buttons', 'move_left', 'move_right', 'move_down', 'move_up', 'delta_x_bigger',
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'delta_y_bigger', 'delta_x_lower', 'delta_y_lower', 'add_movement_buttons', 'setup_boxes', 'initial_plot',
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'show']
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# %% ../nbs/xai.ipynb 1
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#Weight & Biases
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import wandb
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#Yaml
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from yaml import load, FullLoader
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#Embeddings
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from .all import *
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from tsai.data.preparation import prepare_forecasting_data
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from tsai.data.validation import get_forecasting_splits
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from fastcore.all import *
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#Dimensionality reduction
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from tsai.imports import *
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#Clustering
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import hdbscan
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import time
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from .dr import get_PCA_prjs, get_UMAP_prjs, get_TSNE_prjs
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import seaborn as sns
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import matplotlib.pyplot as plt
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import pandas as pd
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import ipywidgets as widgets
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from IPython.display import display
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from functools import partial
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from IPython.display import display, clear_output, HTML as IPHTML
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from ipywidgets import Button, Output, VBox, HBox, HTML, Layout, FloatSlider
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import plotly.graph_objs as go
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import plotly.offline as py
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import plotly.io as pio
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#! pip install kaleido
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import kaleido
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# %% ../nbs/xai.ipynb 4
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def get_embeddings(config_lrp, run_lrp, api, print_flag = False):
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artifacts_gettr = run_lrp.use_artifact if config_lrp.use_wandb else api.artifact
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emb_artifact = artifacts_gettr(config_lrp.emb_artifact, type='embeddings')
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if print_flag: print(emb_artifact.name)
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emb_config = emb_artifact.logged_by().config
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return emb_artifact.to_obj(), emb_artifact, emb_config
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# %% ../nbs/xai.ipynb 5
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def get_dataset(
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config_lrp,
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config_emb,
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config_dr,
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run_lrp,
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api,
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print_flag = False
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):
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# Botch to use artifacts offline
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artifacts_gettr = run_lrp.use_artifact if config_lrp.use_wandb else api.artifact
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enc_artifact = artifacts_gettr(config_emb['enc_artifact'], type='learner')
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if print_flag: print (enc_artifact.name)
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## TODO: This only works when you run it two timeS! WTF?
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try:
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enc_learner = enc_artifact.to_obj()
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except:
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enc_learner = enc_artifact.to_obj()
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## Restore artifact
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enc_logger = enc_artifact.logged_by()
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enc_artifact_train = artifacts_gettr(enc_logger.config['train_artifact'], type='dataset')
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#cfg_.show_attrdict(enc_logger.config)
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if enc_logger.config['valid_artifact'] is not None:
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enc_artifact_valid = artifacts_gettr(enc_logger.config['valid_artifact'], type='dataset')
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if print_flag: print("enc_artifact_valid:", enc_artifact_valid.name)
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if print_flag: print("enc_artifact_train: ", enc_artifact_train.name)
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if config_dr['dr_artifact'] is not None:
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print("Is not none")
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dr_artifact = artifacts_gettr(config_dr['enc_artifact'])
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else:
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dr_artifact = enc_artifact_train
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if print_flag: print("DR artifact train: ", dr_artifact.name)
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if print_flag: print("--> DR artifact name", dr_artifact.name)
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dr_artifact
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df = dr_artifact.to_df()
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if print_flag: print("--> DR After to df", df.shape)
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if print_flag: display(df.head())
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return df, dr_artifact, enc_artifact, enc_learner
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# %% ../nbs/xai.ipynb 6
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def umap_parameters(config_dr, config):
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umap_params_cpu = {
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'n_neighbors' : config_dr.n_neighbors,
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'min_dist' : config_dr.min_dist,
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'random_state': np.uint64(822569775),
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'metric': config_dr.metric,
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#'a': 1.5769434601962196,
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#'b': 0.8950608779914887,
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#'metric_kwds': {'p': 2}, #No debería ser necesario, just in case
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#'output_metric': 'euclidean',
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'verbose': 4,
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#'n_epochs': 200
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}
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umap_params_gpu = {
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'n_neighbors' : config_dr.n_neighbors,
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'min_dist' : config_dr.min_dist,
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'random_state': np.uint64(1234),
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'metric': config_dr.metric,
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'a': 1.5769434601962196,
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'b': 0.8950608779914887,
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'target_metric': 'euclidean',
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'target_n_neighbors': config_dr.n_neighbors,
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'verbose': 4, #6, #CUML_LEVEL_TRACE
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'n_epochs': 200*3*2,
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'init': 'random',
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'hash_input': True
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}
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if config_dr.cpu_flag:
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umap_params = umap_params_cpu
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else:
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umap_params = umap_params_gpu
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return umap_params
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# %% ../nbs/xai.ipynb 7
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def get_prjs(embs_no_nan, config_dr, config, print_flag = False):
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umap_params = umap_parameters(config_dr, config)
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prjs_pca = get_PCA_prjs(
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X = embs_no_nan,
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cpu = False,
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print_flag = print_flag,
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**umap_params
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)
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if print_flag:
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print(prjs_pca.shape)
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prjs_umap = get_UMAP_prjs(
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input_data = prjs_pca,
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cpu = config_dr.cpu_flag, #config_dr.cpu,
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print_flag = print_flag,
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**umap_params
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)
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if print_flag: prjs_umap.shape
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return prjs_umap
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# %% ../nbs/xai.ipynb 9
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def plot_projections(prjs, umap_params, fig_size = (25,25)):
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"Plot 2D projections thorugh a connected scatter plot"
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df_prjs = pd.DataFrame(prjs, columns = ['x1', 'x2'])
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fig = plt.figure(figsize=(fig_size[0],fig_size[1]))
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ax = fig.add_subplot(111)
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ax.scatter(df_prjs['x1'], df_prjs['x2'], marker='o', facecolors='none', edgecolors='b', alpha=0.1)
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ax.plot(df_prjs['x1'], df_prjs['x2'], alpha=0.5, picker=1)
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plt.title('DR params - n_neighbors:{:d} min_dist:{:f}'.format(
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umap_params['n_neighbors'],umap_params['min_dist']))
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return ax
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# %% ../nbs/xai.ipynb 10
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def plot_projections_clusters(prjs, clusters_labels, umap_params, fig_size = (25,25)):
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"Plot 2D projections thorugh a connected scatter plot"
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df_prjs = pd.DataFrame(prjs, columns = ['x1', 'x2'])
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df_prjs['cluster'] = clusters_labels
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fig = plt.figure(figsize=(fig_size[0],fig_size[1]))
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ax = fig.add_subplot(111)
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# Create a scatter plot for each cluster with different colors
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unique_labels = df_prjs['cluster'].unique()
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print(unique_labels)
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for label in unique_labels:
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cluster_data = df_prjs[df_prjs['cluster'] == label]
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ax.scatter(cluster_data['x1'], cluster_data['x2'], label=f'Cluster {label}')
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#ax.scatter(df_prjs['x1'], df_prjs['x2'], marker='o', facecolors='none', edgecolors='b', alpha=0.1)
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#ax.plot(df_prjs['x1'], df_prjs['x2'], alpha=0.5, picker=1)
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plt.title('DR params - n_neighbors:{:d} min_dist:{:f}'.format(
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umap_params['n_neighbors'],umap_params['min_dist']))
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return ax
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# %% ../nbs/xai.ipynb 11
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def calculate_cluster_stats(data, labels):
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"""Computes the media and the standard deviation for every cluster."""
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cluster_stats = {}
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for label in np.unique(labels):
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#members = data[labels == label]
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members = data
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mean = np.mean(members, axis = 0)
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std = np.std(members, axis = 0)
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cluster_stats[label] = (mean, std)
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return cluster_stats
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# %% ../nbs/xai.ipynb 12
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def anomaly_score(point, cluster_stats, label):
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"""Computes an anomaly score for each point."""
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mean, std = cluster_stats[label]
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return np.linalg.norm((point - mean) / std)
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# %% ../nbs/xai.ipynb 13
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def detector(data, labels):
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"""Anomaly detection function."""
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cluster_stats = calculate_cluster_stats(data, labels)
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scores = []
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for point, label in zip(data, labels):
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score = anomaly_score(point, cluster_stats, label)
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scores.append(score)
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return np.array(scores)
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# %% ../nbs/xai.ipynb 15
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def plot_anomaly_scores_distribution(anomaly_scores):
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"Plot the distribution of anomaly scores to check for normality"
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plt.figure(figsize=(10, 6))
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sns.histplot(anomaly_scores, kde=True, bins=30)
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plt.title("Distribución de Anomaly Scores")
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plt.xlabel("Anomaly Score")
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plt.ylabel("Frecuencia")
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plt.show()
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# %% ../nbs/xai.ipynb 16
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def plot_clusters_with_anomalies(prjs, clusters_labels, anomaly_scores, threshold, fig_size=(25, 25)):
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"Plot 2D projections of clusters and superimpose anomalies"
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df_prjs = pd.DataFrame(prjs, columns=['x1', 'x2'])
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df_prjs['cluster'] = clusters_labels
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df_prjs['anomaly'] = anomaly_scores > threshold
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fig = plt.figure(figsize=(fig_size[0], fig_size[1]))
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ax = fig.add_subplot(111)
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# Plot each cluster with different colors
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unique_labels = df_prjs['cluster'].unique()
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for label in unique_labels:
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cluster_data = df_prjs[df_prjs['cluster'] == label]
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ax.scatter(cluster_data['x1'], cluster_data['x2'], label=f'Cluster {label}', alpha=0.7)
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# Superimpose anomalies
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anomalies = df_prjs[df_prjs['anomaly']]
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ax.scatter(anomalies['x1'], anomalies['x2'], color='red', label='Anomalies', edgecolor='k', s=50)
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plt.title('Clusters and anomalies')
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plt.legend()
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plt.show()
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def update_plot(threshold, prjs_umap, clusters_labels, anomaly_scores, fig_size):
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plot_clusters_with_anomalies(prjs_umap, clusters_labels, anomaly_scores, threshold, fig_size)
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def plot_clusters_with_anomalies_interactive_plot(threshold, prjs_umap, clusters_labels, anomaly_scores, fig_size):
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threshold_slider = widgets.FloatSlider(value=threshold, min=0.001, max=3, step=0.001, description='Threshold')
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interactive_plot = widgets.interactive(update_plot, threshold = threshold_slider,
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prjs_umap = widgets.fixed(prjs_umap),
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clusters_labels = widgets.fixed(clusters_labels),
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anomaly_scores = widgets.fixed(anomaly_scores),
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fig_size = widgets.fixed((25,25)))
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display(interactive_plot)
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# %% ../nbs/xai.ipynb 18
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import plotly.express as px
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from datetime import timedelta
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# %% ../nbs/xai.ipynb 19
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def get_df_selected(df, selected_indices, w, stride = 1): #Cuidado con stride
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'''Links back the selected points to the original dataframe and returns the associated windows indices'''
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n_windows = len(selected_indices)
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window_ranges = [(id*stride, (id*stride)+w) for id in selected_indices]
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#window_ranges = [(id*w, (id+1)*w+1) for id in selected_indices]
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#window_ranges = [(id*stride, (id*stride)+w) for id in selected_indices]
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#print(window_ranges)
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valores_tramos = [df.iloc[inicio:fin+1] for inicio, fin in window_ranges]
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df_selected = pd.concat(valores_tramos, ignore_index=False)
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return window_ranges, n_windows, df_selected
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# %% ../nbs/xai.ipynb 20
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def shift_datetime(dt, seconds, sign, dateformat="%Y-%m-%d %H:%M:%S.%f", print_flag = False):
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"""
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This function gets a datetime dt, a number of seconds,
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a sign and moves the date such number of seconds to the future
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if sign is '+' and to the past if sing is '-'.
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"""
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if print_flag: print(dateformat)
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dateformat2= "%Y-%m-%d %H:%M:%S.%f"
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dateformat3 = "%Y-%m-%d"
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ok = False
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try:
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if print_flag: print("dt ", dt, "seconds", seconds, "sign", sign)
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new_dt = datetime.strptime(dt, dateformat)
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if print_flag: print("ndt", new_dt)
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ok = True
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except ValueError as e:
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if print_flag:
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print("Error: ", e)
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if (not ok):
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try:
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if print_flag: print("Parsing alternative dataformat", dt, "seconds", seconds, "sign", sign, dateformat2)
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new_dt = datetime.strptime(dt, dateformat3)
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if print_flag: print("2ndt", new_dt)
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except ValueError as e:
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print("Error: ", e)
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if print_flag: print(new_dt)
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try:
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-
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if new_dt.hour == 0 and new_dt.minute == 0 and new_dt.second == 0:
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if print_flag: "Aqui"
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new_dt = new_dt.replace(hour=0, minute=0, second=0, microsecond=0)
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if print_flag: print(new_dt)
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if print_flag: print("ndt", new_dt)
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if (sign == '+'):
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if print_flag: print("Aqui")
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new_dt = new_dt + timedelta(seconds = seconds)
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if print_flag: print(new_dt)
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else:
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if print_flag: print(sign, type(dt))
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new_dt = new_dt - timedelta(seconds = seconds)
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if print_flag: print(new_dt)
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if new_dt.hour == 0 and new_dt.minute == 0 and new_dt.second == 0:
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if print_flag: print("replacing")
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| 329 |
-
new_dt = new_dt.replace(hour=0, minute=0, second=0, microsecond=0)
|
| 330 |
-
|
| 331 |
-
new_dt_str = new_dt.strftime(dateformat2)
|
| 332 |
-
if print_flag: print("new dt ", new_dt)
|
| 333 |
-
except ValueError as e:
|
| 334 |
-
if print_flag: print("Aqui3")
|
| 335 |
-
shift_datetime(dt, 0, sign, dateformat = "%Y-%m-%d", print_flag = False)
|
| 336 |
-
return str(e)
|
| 337 |
-
return new_dt_str
|
| 338 |
-
|
| 339 |
-
|
| 340 |
-
|
| 341 |
-
# %% ../nbs/xai.ipynb 21
|
| 342 |
-
def get_dateformat(text_date):
|
| 343 |
-
dateformat1 = "%Y-%m-%d %H:%M:%S"
|
| 344 |
-
dateformat2 = "%Y-%m-%d %H:%M:%S.%f"
|
| 345 |
-
dateformat3 = "%Y-%m-%d"
|
| 346 |
-
dateformat = ""
|
| 347 |
-
parts = text_date.split()
|
| 348 |
-
|
| 349 |
-
if len(parts) == 2:
|
| 350 |
-
time_parts = parts[1].split(':')
|
| 351 |
-
if len(time_parts) == 3:
|
| 352 |
-
sec_parts = time_parts[2].split('.')
|
| 353 |
-
if len(sec_parts) == 2:
|
| 354 |
-
dateformat = dateformat2
|
| 355 |
-
else:
|
| 356 |
-
dateformat = dateformat1
|
| 357 |
-
else:
|
| 358 |
-
dateformat = "unknown format 1"
|
| 359 |
-
elif len(parts) == 1:
|
| 360 |
-
dateformat = dateformat3
|
| 361 |
-
else:
|
| 362 |
-
dateformat = "unknown format 2"
|
| 363 |
-
|
| 364 |
-
return dateformat
|
| 365 |
-
|
| 366 |
-
# %% ../nbs/xai.ipynb 23
|
| 367 |
-
def get_anomalies(df, threshold, flag):
|
| 368 |
-
df['anomaly'] = [ (score > threshold) and flag for score in df['anomaly_score']]
|
| 369 |
-
|
| 370 |
-
def get_anomaly_styles(df, threshold, anomaly_scores, flag = False, print_flag = False):
|
| 371 |
-
if print_flag: print("Threshold: ", threshold)
|
| 372 |
-
if print_flag: print("Flag", flag)
|
| 373 |
-
if print_flag: print("df ~", df.shape)
|
| 374 |
-
df['anomaly'] = [ (score > threshold) and flag for score in df['anomaly_score'] ]
|
| 375 |
-
if print_flag: print(df)
|
| 376 |
-
get_anomalies(df, threshold, flag)
|
| 377 |
-
anomalies = df[df['anomaly']]
|
| 378 |
-
if flag:
|
| 379 |
-
df['anomaly'] = [
|
| 380 |
-
(score > threshold) and flag
|
| 381 |
-
for score in anomaly_scores
|
| 382 |
-
]
|
| 383 |
-
symbols = [
|
| 384 |
-
'x' if is_anomaly else 'circle'
|
| 385 |
-
for is_anomaly in df['anomaly']
|
| 386 |
-
]
|
| 387 |
-
line_colors = [
|
| 388 |
-
'black'
|
| 389 |
-
if (is_anomaly and flag) else 'rgba(0,0,0,0)'
|
| 390 |
-
for is_anomaly in df['anomaly']
|
| 391 |
-
]
|
| 392 |
-
else:
|
| 393 |
-
symbols = ['circle' for _ in df['x1']]
|
| 394 |
-
line_colors = ['rgba(0,0,0,0)' for _ in df['x1']]
|
| 395 |
-
if print_flag: print(anomalies)
|
| 396 |
-
return symbols, line_colors
|
| 397 |
-
### Example of use
|
| 398 |
-
#prjs_df = pd.DataFrame(prjs_umap, columns = ['x1', 'x2'])
|
| 399 |
-
#prjs_df['anomaly_score'] = anomaly_scores
|
| 400 |
-
#s, l = get_anomaly_styles(prjs_df, 1, True)
|
| 401 |
-
|
| 402 |
-
# %% ../nbs/xai.ipynb 24
|
| 403 |
-
class InteractiveAnomalyPlot():
|
| 404 |
-
def __init__(
|
| 405 |
-
self, selected_indices = [],
|
| 406 |
-
threshold = 0.15,
|
| 407 |
-
anomaly_flag = False,
|
| 408 |
-
path = "../imgs", w = 0
|
| 409 |
-
):
|
| 410 |
-
self.selected_indices = selected_indices
|
| 411 |
-
self.selected_indices_tmp = selected_indices
|
| 412 |
-
self.threshold = threshold
|
| 413 |
-
self.threshold_ = threshold
|
| 414 |
-
self.anomaly_flag = anomaly_flag
|
| 415 |
-
self.w = w
|
| 416 |
-
self.name = f"w={self.w}"
|
| 417 |
-
self.path = f"{path}{self.name}.png"
|
| 418 |
-
self.interaction_enabled = True
|
| 419 |
-
|
| 420 |
-
|
| 421 |
-
def plot_projections_clusters_interactive(
|
| 422 |
-
self, prjs, cluster_labels, umap_params, anomaly_scores=[], fig_size=(7,7), print_flag = False
|
| 423 |
-
):
|
| 424 |
-
self.selected_indices_tmp = self.selected_indices
|
| 425 |
-
py.init_notebook_mode()
|
| 426 |
-
|
| 427 |
-
prjs_df, cluster_colors = plot_initial_config(prjs, cluster_labels, anomaly_scores)
|
| 428 |
-
legend_items = [widgets.HTML(f'<b>Cluster {cluster}:</b> <span style="color:{color};">■</span>')
|
| 429 |
-
for cluster, color in cluster_colors.items()]
|
| 430 |
-
legend = widgets.VBox(legend_items)
|
| 431 |
-
|
| 432 |
-
marker_colors = prjs_df['cluster'].map(cluster_colors)
|
| 433 |
-
|
| 434 |
-
symbols, line_colors = get_anomaly_styles(prjs_df, self.threshold_, anomaly_scores, self.anomaly_flag, print_flag)
|
| 435 |
-
|
| 436 |
-
fig = go.FigureWidget(
|
| 437 |
-
[
|
| 438 |
-
go.Scatter(
|
| 439 |
-
x=prjs_df['x1'], y=prjs_df['x2'],
|
| 440 |
-
mode="markers",
|
| 441 |
-
marker= {
|
| 442 |
-
'color': marker_colors,
|
| 443 |
-
'line': { 'color': line_colors, 'width': 1 },
|
| 444 |
-
'symbol': symbols
|
| 445 |
-
},
|
| 446 |
-
text = prjs_df.index
|
| 447 |
-
)
|
| 448 |
-
]
|
| 449 |
-
)
|
| 450 |
-
|
| 451 |
-
line_trace = go.Scatter(
|
| 452 |
-
x=prjs_df['x1'],
|
| 453 |
-
y=prjs_df['x2'],
|
| 454 |
-
mode="lines",
|
| 455 |
-
line=dict(color='rgba(128, 128, 128, 0.5)', width=1)#,
|
| 456 |
-
#showlegend=False # Puedes configurar si deseas mostrar esta línea en la leyenda
|
| 457 |
-
)
|
| 458 |
-
|
| 459 |
-
fig.add_trace(line_trace)
|
| 460 |
-
|
| 461 |
-
sca = fig.data[0]
|
| 462 |
-
|
| 463 |
-
fig.update_layout(
|
| 464 |
-
dragmode='lasso',
|
| 465 |
-
width=700,
|
| 466 |
-
height=500,
|
| 467 |
-
title={
|
| 468 |
-
'text': '<span style="font-weight:bold">DR params - n_neighbors:{:d} min_dist:{:f}</span>'.format(
|
| 469 |
-
umap_params['n_neighbors'], umap_params['min_dist']),
|
| 470 |
-
'y':0.98,
|
| 471 |
-
'x':0.5,
|
| 472 |
-
'xanchor': 'center',
|
| 473 |
-
'yanchor': 'top'
|
| 474 |
-
},
|
| 475 |
-
plot_bgcolor='white',
|
| 476 |
-
paper_bgcolor='#f0f0f0',
|
| 477 |
-
xaxis=dict(gridcolor='lightgray', zerolinecolor='black', title = 'x'),
|
| 478 |
-
yaxis=dict(gridcolor='lightgray', zerolinecolor='black', title = 'y'),
|
| 479 |
-
margin=dict(l=10, r=20, t=30, b=10)
|
| 480 |
-
|
| 481 |
-
|
| 482 |
-
)
|
| 483 |
-
|
| 484 |
-
output_tmp = Output()
|
| 485 |
-
output_button = Output()
|
| 486 |
-
output_anomaly = Output()
|
| 487 |
-
output_threshold = Output()
|
| 488 |
-
output_width = Output()
|
| 489 |
-
|
| 490 |
-
def select_action(trace, points, selector):
|
| 491 |
-
self.selected_indices_tmp = points.point_inds
|
| 492 |
-
with output_tmp:
|
| 493 |
-
output_tmp.clear_output(wait=True)
|
| 494 |
-
if print_flag: print("Selected indices tmp:", self.selected_indices_tmp)
|
| 495 |
-
|
| 496 |
-
def button_action(b):
|
| 497 |
-
self.selected_indices = self.selected_indices_tmp
|
| 498 |
-
with output_button:
|
| 499 |
-
output_button.clear_output(wait = True)
|
| 500 |
-
if print_flag: print("Selected indices:", self.selected_indices)
|
| 501 |
-
|
| 502 |
-
|
| 503 |
-
def update_anomalies():
|
| 504 |
-
if print_flag: print("About to update anomalies")
|
| 505 |
-
|
| 506 |
-
symbols, line_colors = get_anomaly_styles(prjs_df, self.threshold_, anomaly_scores, self.anomaly_flag, print_flag)
|
| 507 |
-
|
| 508 |
-
if print_flag: print("Anomaly styles got")
|
| 509 |
-
|
| 510 |
-
with fig.batch_update():
|
| 511 |
-
fig.data[0].marker.symbol = symbols
|
| 512 |
-
fig.data[0].marker.line.color = line_colors
|
| 513 |
-
if print_flag: print("Anomalies updated")
|
| 514 |
-
if print_flag: print("Threshold: ", self.threshold_)
|
| 515 |
-
if print_flag: print("Scores: ", anomaly_scores)
|
| 516 |
-
|
| 517 |
-
|
| 518 |
-
def anomaly_action(b):
|
| 519 |
-
with output_anomaly: # Cambia output_flag a output_anomaly
|
| 520 |
-
output_anomaly.clear_output(wait=True)
|
| 521 |
-
if print_fllag: print("Negate anomaly flag")
|
| 522 |
-
self.anomaly_flag = not self.anomaly_flag
|
| 523 |
-
if print_flag: print("Show anomalies:", self.anomaly_flag)
|
| 524 |
-
update_anomalies()
|
| 525 |
-
|
| 526 |
-
sca.on_selection(select_action)
|
| 527 |
-
layout = widgets.Layout(width='auto', height='40px')
|
| 528 |
-
button = Button(
|
| 529 |
-
description="Update selected_indices",
|
| 530 |
-
style = {'button_color': 'lightblue'},
|
| 531 |
-
display = 'flex',
|
| 532 |
-
flex_row = 'column',
|
| 533 |
-
align_items = 'stretch',
|
| 534 |
-
layout = layout
|
| 535 |
-
)
|
| 536 |
-
anomaly_button = Button(
|
| 537 |
-
description = "Show anomalies",
|
| 538 |
-
style = {'button_color': 'lightgray'},
|
| 539 |
-
display = 'flex',
|
| 540 |
-
flex_row = 'column',
|
| 541 |
-
align_items = 'stretch',
|
| 542 |
-
layout = layout
|
| 543 |
-
)
|
| 544 |
-
|
| 545 |
-
button.on_click(button_action)
|
| 546 |
-
anomaly_button.on_click(anomaly_action)
|
| 547 |
-
|
| 548 |
-
##### Reactivity buttons
|
| 549 |
-
pause_button = Button(
|
| 550 |
-
description = "Pause interactiveness",
|
| 551 |
-
style = {'button_color': 'pink'},
|
| 552 |
-
display = 'flex',
|
| 553 |
-
flex_row = 'column',
|
| 554 |
-
align_items = 'stretch',
|
| 555 |
-
layout = layout
|
| 556 |
-
)
|
| 557 |
-
resume_button = Button(
|
| 558 |
-
description = "Resume interactiveness",
|
| 559 |
-
style = {'button_color': 'lightgreen'},
|
| 560 |
-
display = 'flex',
|
| 561 |
-
flex_row = 'column',
|
| 562 |
-
align_items = 'stretch',
|
| 563 |
-
layout = layout
|
| 564 |
-
)
|
| 565 |
-
|
| 566 |
-
|
| 567 |
-
threshold_slider = FloatSlider(
|
| 568 |
-
value=self.threshold_,
|
| 569 |
-
min=0.0,
|
| 570 |
-
max=float(np.ceil(self.threshold+5)),
|
| 571 |
-
step=0.0001,
|
| 572 |
-
description='Anomaly threshold:',
|
| 573 |
-
continuous_update=False
|
| 574 |
-
)
|
| 575 |
-
|
| 576 |
-
def pause_interaction(b):
|
| 577 |
-
self.interaction_enabled = False
|
| 578 |
-
fig.update_layout(dragmode='pan')
|
| 579 |
-
|
| 580 |
-
def resume_interaction(b):
|
| 581 |
-
self.interaction_enabled = True
|
| 582 |
-
fig.update_layout(dragmode='lasso')
|
| 583 |
-
|
| 584 |
-
|
| 585 |
-
def update_threshold(change):
|
| 586 |
-
with output_threshold:
|
| 587 |
-
output_threshold.clear_output(wait = True)
|
| 588 |
-
if print_flag: print("Update threshold")
|
| 589 |
-
self.threshold_ = change.new
|
| 590 |
-
if print_flag: print("Update anomalies threshold = ", self.threshold_)
|
| 591 |
-
update_anomalies()
|
| 592 |
-
|
| 593 |
-
#### Width
|
| 594 |
-
width_slider = FloatSlider(
|
| 595 |
-
value = 0.5,
|
| 596 |
-
min = 0.0,
|
| 597 |
-
max = 1.0,
|
| 598 |
-
step = 0.0001,
|
| 599 |
-
description = 'Line width:',
|
| 600 |
-
continuous_update = False
|
| 601 |
-
)
|
| 602 |
-
|
| 603 |
-
def update_width(change):
|
| 604 |
-
with output_width:
|
| 605 |
-
try:
|
| 606 |
-
output_width.clear_output(wait = True)
|
| 607 |
-
if print_flag:
|
| 608 |
-
print("Change line width")
|
| 609 |
-
print("Trace to update:", fig.data[1])
|
| 610 |
-
with fig.batch_update():
|
| 611 |
-
fig.data[1].line.width = change.new # Actualiza la opacidad de la línea
|
| 612 |
-
if print_flag: print("ChangeD line width")
|
| 613 |
-
except Exception as e:
|
| 614 |
-
print("Error updating line width:", e)
|
| 615 |
-
|
| 616 |
-
|
| 617 |
-
|
| 618 |
-
pause_button.on_click(pause_interaction)
|
| 619 |
-
resume_button.on_click(resume_interaction)
|
| 620 |
-
|
| 621 |
-
threshold_slider.observe(update_threshold, 'value')
|
| 622 |
-
|
| 623 |
-
####
|
| 624 |
-
width_slider.observe(update_width, names = 'value')
|
| 625 |
-
|
| 626 |
-
#####
|
| 627 |
-
space = HTML(" ")
|
| 628 |
-
|
| 629 |
-
vbox = VBox((output_tmp, output_button, output_anomaly, output_threshold, fig))
|
| 630 |
-
hbox = HBox((space, button, space, pause_button, space, resume_button, anomaly_button))
|
| 631 |
-
|
| 632 |
-
# Centrar las dos cajas horizontalmente en el VBox
|
| 633 |
-
|
| 634 |
-
box_layout = widgets.Layout(display='flex',
|
| 635 |
-
flex_flow='column',
|
| 636 |
-
align_items='center',
|
| 637 |
-
width='100%')
|
| 638 |
-
|
| 639 |
-
if self.anomaly_flag:
|
| 640 |
-
box = VBox((hbox,threshold_slider,width_slider, output_width, vbox), layout = box_layout)
|
| 641 |
-
else:
|
| 642 |
-
box = VBox((hbox, width_slider, output_width, vbox), layout = box_layout)
|
| 643 |
-
box.add_class("layout")
|
| 644 |
-
plot_save(fig, self.w)
|
| 645 |
-
|
| 646 |
-
display(box)
|
| 647 |
-
|
| 648 |
-
|
| 649 |
-
# %% ../nbs/xai.ipynb 25
|
| 650 |
-
def plot_save(fig, w):
|
| 651 |
-
image_bytes = pio.to_image(fig, format='png')
|
| 652 |
-
with open(f"../imgs/w={w}.png", 'wb') as f:
|
| 653 |
-
f.write(image_bytes)
|
| 654 |
-
|
| 655 |
-
|
| 656 |
-
# %% ../nbs/xai.ipynb 26
|
| 657 |
-
def plot_initial_config(prjs, cluster_labels, anomaly_scores):
|
| 658 |
-
prjs_df = pd.DataFrame(prjs, columns = ['x1', 'x2'])
|
| 659 |
-
prjs_df['cluster'] = cluster_labels
|
| 660 |
-
prjs_df['anomaly_score'] = anomaly_scores
|
| 661 |
-
|
| 662 |
-
cluster_colors_df = pd.DataFrame({'cluster': cluster_labels}).drop_duplicates()
|
| 663 |
-
cluster_colors_df['color'] = px.colors.qualitative.Set1[:len(cluster_colors_df)]
|
| 664 |
-
cluster_colors = dict(zip(cluster_colors_df['cluster'], cluster_colors_df['color']))
|
| 665 |
-
return prjs_df, cluster_colors
|
| 666 |
-
|
| 667 |
-
# %% ../nbs/xai.ipynb 27
|
| 668 |
-
def merge_overlapping_windows(windows):
|
| 669 |
-
if not windows:
|
| 670 |
-
return []
|
| 671 |
-
|
| 672 |
-
# Order
|
| 673 |
-
sorted_windows = sorted(windows, key=lambda x: x[0])
|
| 674 |
-
|
| 675 |
-
merged_windows = [sorted_windows[0]]
|
| 676 |
-
|
| 677 |
-
for window in sorted_windows[1:]:
|
| 678 |
-
if window[0] <= merged_windows[-1][1]:
|
| 679 |
-
# Merge!
|
| 680 |
-
merged_windows[-1] = (merged_windows[-1][0], max(window[1], merged_windows[-1][1]))
|
| 681 |
-
else:
|
| 682 |
-
merged_windows.append(window)
|
| 683 |
-
|
| 684 |
-
return merged_windows
|
| 685 |
-
|
| 686 |
-
# %% ../nbs/xai.ipynb 29
|
| 687 |
-
class InteractiveTSPlot:
|
| 688 |
-
def __init__(
|
| 689 |
-
self,
|
| 690 |
-
df,
|
| 691 |
-
selected_indices,
|
| 692 |
-
meaningful_features_subset_ids,
|
| 693 |
-
w,
|
| 694 |
-
stride=1,
|
| 695 |
-
print_flag=False,
|
| 696 |
-
num_points=10000,
|
| 697 |
-
dateformat='%Y-%m-%d %H:%M:%S',
|
| 698 |
-
delta_x = 10,
|
| 699 |
-
delta_y = 0.1
|
| 700 |
-
):
|
| 701 |
-
self.df = df
|
| 702 |
-
self.selected_indices = selected_indices
|
| 703 |
-
self.meaningful_features_subset_ids = meaningful_features_subset_ids
|
| 704 |
-
self.w = w
|
| 705 |
-
self.stride = stride
|
| 706 |
-
self.print_flag = print_flag
|
| 707 |
-
self.num_points = num_points
|
| 708 |
-
self.dateformat = dateformat
|
| 709 |
-
self.fig = go.FigureWidget()
|
| 710 |
-
self.buttons = []
|
| 711 |
-
self.print_flag = print_flag
|
| 712 |
-
|
| 713 |
-
self.delta_x = delta_x
|
| 714 |
-
self.delta_y = delta_y
|
| 715 |
-
|
| 716 |
-
self.window_ranges, self.n_windows, self.df_selected = get_df_selected(
|
| 717 |
-
self.df, self.selected_indices, self.w, self.stride
|
| 718 |
-
)
|
| 719 |
-
# Ensure the small possible number of windows to plot (like in R Shiny App)
|
| 720 |
-
self.window_ranges = merge_overlapping_windows(self.window_ranges)
|
| 721 |
-
|
| 722 |
-
#Num points no va bien...
|
| 723 |
-
#num_points = min(df_selected.shape[0], num_points)
|
| 724 |
-
|
| 725 |
-
if self.print_flag:
|
| 726 |
-
print("windows: ", self.n_windows, self.window_ranges)
|
| 727 |
-
print("selected id: ", self.df_selected.index)
|
| 728 |
-
print("points: ", self.num_points)
|
| 729 |
-
|
| 730 |
-
self.df.index = self.df.index.astype(str)
|
| 731 |
-
self.fig = go.FigureWidget()
|
| 732 |
-
self.colors = [
|
| 733 |
-
f'rgb({np.random.randint(0, 256)}, {np.random.randint(0, 256)}, {np.random.randint(0, 256)})'
|
| 734 |
-
for _ in range(self.n_windows)
|
| 735 |
-
]
|
| 736 |
-
|
| 737 |
-
##############################
|
| 738 |
-
# Outputs for debug printing #
|
| 739 |
-
##############################
|
| 740 |
-
self.output_windows = Output()
|
| 741 |
-
self.output_move = Output()
|
| 742 |
-
self.output_delta_x = Output()
|
| 743 |
-
self.output_delta_y = Output()
|
| 744 |
-
|
| 745 |
-
|
| 746 |
-
|
| 747 |
-
|
| 748 |
-
|
| 749 |
-
# %% ../nbs/xai.ipynb 30
|
| 750 |
-
def add_selected_features(self: InteractiveTSPlot):
|
| 751 |
-
# Add features time series
|
| 752 |
-
for feature_id in self.df.columns:
|
| 753 |
-
feature_pos = self.df.columns.get_loc(feature_id)
|
| 754 |
-
trace = go.Scatter(
|
| 755 |
-
#x=df.index[:num_points],
|
| 756 |
-
#y=df[feature_id][:num_points],
|
| 757 |
-
x = self.df.index,
|
| 758 |
-
y = self.df[feature_id],
|
| 759 |
-
mode='lines',
|
| 760 |
-
name=feature_id,
|
| 761 |
-
visible=feature_pos in self.meaningful_features_subset_ids,
|
| 762 |
-
text=self.df.index
|
| 763 |
-
#text=[f'{i}-{val}' for i, val in enumerate(df.index)]
|
| 764 |
-
)
|
| 765 |
-
self.fig.add_trace(trace)
|
| 766 |
-
|
| 767 |
-
InteractiveTSPlot.add_selected_features = add_selected_features
|
| 768 |
-
|
| 769 |
-
# %% ../nbs/xai.ipynb 31
|
| 770 |
-
def add_windows(self: InteractiveTSPlot):
|
| 771 |
-
for i, (start, end) in enumerate(self.window_ranges):
|
| 772 |
-
self.fig.add_shape(
|
| 773 |
-
type="rect",
|
| 774 |
-
x0=self.df.index[start],
|
| 775 |
-
x1=self.df.index[end],
|
| 776 |
-
y0= 0,
|
| 777 |
-
y1= 1,
|
| 778 |
-
yref = "paper",
|
| 779 |
-
fillcolor=self.colors[i], #"LightSalmon",
|
| 780 |
-
opacity=0.25,
|
| 781 |
-
layer="below",
|
| 782 |
-
line=dict(color=self.colors[i], width=1),
|
| 783 |
-
name = f"w_{i}"
|
| 784 |
-
)
|
| 785 |
-
with self.output_windows:
|
| 786 |
-
print("w[" + str( self.selected_indices[i] )+ "]="+str(self.df.index[start])+", "+str(self.df.index[end])+")")
|
| 787 |
-
|
| 788 |
-
InteractiveTSPlot.add_windows = add_windows
|
| 789 |
-
|
| 790 |
-
# %% ../nbs/xai.ipynb 32
|
| 791 |
-
def setup_style(self: InteractiveTSPlot):
|
| 792 |
-
self.fig.update_layout(
|
| 793 |
-
title='Time Series with time window plot',
|
| 794 |
-
xaxis_title='Datetime',
|
| 795 |
-
yaxis_title='Value',
|
| 796 |
-
legend_title='Variables',
|
| 797 |
-
margin=dict(l=10, r=10, t=30, b=10),
|
| 798 |
-
xaxis=dict(
|
| 799 |
-
tickformat = '%d-' + self.dateformat,
|
| 800 |
-
#tickvals=list(range(len(df.index))),
|
| 801 |
-
#ticktext = [f'{i}-{val}' for i, val in enumerate(df.index)]
|
| 802 |
-
#grid_color = 'lightgray', zerolinecolor='black', title = 'x'
|
| 803 |
-
),
|
| 804 |
-
#yaxis = dict(grid_color = 'lightgray', zerolinecolor='black', title = 'y'),
|
| 805 |
-
#plot_color = 'white',
|
| 806 |
-
paper_bgcolor='#f0f0f0'
|
| 807 |
-
)
|
| 808 |
-
self.fig.update_yaxes(fixedrange=True)
|
| 809 |
-
|
| 810 |
-
InteractiveTSPlot.setup_style = setup_style
|
| 811 |
-
|
| 812 |
-
# %% ../nbs/xai.ipynb 34
|
| 813 |
-
def toggle_trace(self : InteractiveTSPlot, button : Button):
|
| 814 |
-
idx = button.description
|
| 815 |
-
trace = self.fig.data[self.df.columns.get_loc(idx)]
|
| 816 |
-
trace.visible = not trace.visible
|
| 817 |
-
|
| 818 |
-
InteractiveTSPlot.toggle_trace = toggle_trace
|
| 819 |
-
|
| 820 |
-
# %% ../nbs/xai.ipynb 35
|
| 821 |
-
def set_features_buttons(self):
|
| 822 |
-
self.buttons = [
|
| 823 |
-
Button(
|
| 824 |
-
description=str(feature_id),
|
| 825 |
-
button_style='success' if self.df.columns.get_loc(feature_id) in self.meaningful_features_subset_ids else ''
|
| 826 |
-
)
|
| 827 |
-
for feature_id in self.df.columns
|
| 828 |
-
]
|
| 829 |
-
for button in self.buttons:
|
| 830 |
-
button.on_click(self.toggle_trace)
|
| 831 |
-
InteractiveTSPlot.set_features_buttons = set_features_buttons
|
| 832 |
-
|
| 833 |
-
# %% ../nbs/xai.ipynb 36
|
| 834 |
-
def move_left(self : InteractiveTSPlot, button : Button):
|
| 835 |
-
with self.output_move:
|
| 836 |
-
self.output_move.clear_output(wait=True)
|
| 837 |
-
start_date, end_date = self.fig.layout.xaxis.range
|
| 838 |
-
new_start_date = shift_datetime(start_date, self.delta_x, '-', self.dateformat, self.print_flag)
|
| 839 |
-
new_end_date = shift_datetime(end_date, self.delta_x, '-', self.dateformat, self.print_flag)
|
| 840 |
-
with self.fig.batch_update():
|
| 841 |
-
self.fig.layout.xaxis.range = [new_start_date, new_end_date]
|
| 842 |
-
|
| 843 |
-
def move_right(self : InteractiveTSPlot, button : Button):
|
| 844 |
-
self.output_move.clear_output(wait=True)
|
| 845 |
-
with self.output_move:
|
| 846 |
-
start_date, end_date = self.fig.layout.xaxis.range
|
| 847 |
-
new_start_date = shift_datetime(start_date, self.delta_x, '+', self.dateformat, self.print_flag)
|
| 848 |
-
new_end_date = shift_datetime(end_date, self.delta_x, '+', self.dateformat, self.print_flag)
|
| 849 |
-
with self.fig.batch_update():
|
| 850 |
-
self.fig.layout.xaxis.range = [new_start_date, new_end_date]
|
| 851 |
-
|
| 852 |
-
def move_down(self: InteractiveTSPlot, button : Button):
|
| 853 |
-
with self.output_move:
|
| 854 |
-
self.output_move.clear_output(wait=True)
|
| 855 |
-
start_y, end_y = self.fig.layout.yaxis.range
|
| 856 |
-
with self.fig.batch_update():
|
| 857 |
-
self.ig.layout.yaxis.range = [start_y-self.delta_y, end_y-self.delta_y]
|
| 858 |
-
def move_up(self: InteractiveTSPlot, button : Button):
|
| 859 |
-
with self.output_move:
|
| 860 |
-
self.output_move.clear_output(wait=True)
|
| 861 |
-
start_y, end_y = self.fig.layout.yaxis.range
|
| 862 |
-
with self.fig.batch_update():
|
| 863 |
-
self.fig.layout.yaxis.range = [start_y+self.delta_y, end_y+self.delta_y]
|
| 864 |
-
|
| 865 |
-
InteractiveTSPlot.move_left = move_left
|
| 866 |
-
InteractiveTSPlot.move_right = move_right
|
| 867 |
-
InteractiveTSPlot.move_down = move_down
|
| 868 |
-
InteractiveTSPlot.move_up = move_up
|
| 869 |
-
|
| 870 |
-
# %% ../nbs/xai.ipynb 37
|
| 871 |
-
def delta_x_bigger(self: InteractiveTSPlot):
|
| 872 |
-
with self.output_delta_x:
|
| 873 |
-
self.output_delta_x.clear_output(wait = True)
|
| 874 |
-
if self.print_flag: print("Delta before", self.delta_x)
|
| 875 |
-
self.delta_x *= 10
|
| 876 |
-
if self.print_flag: print("delta_x:", self.delta_x)
|
| 877 |
-
|
| 878 |
-
def delta_y_bigger(self: InteractiveTSPlot):
|
| 879 |
-
with self.output_delta_y:
|
| 880 |
-
self.output_delta_y.clear_output(wait = True)
|
| 881 |
-
if self.print_flag: print("Delta before", self.delta_y)
|
| 882 |
-
self.delta_y *= 10
|
| 883 |
-
if self.print_flag: print("delta_y:", self.delta_y)
|
| 884 |
-
|
| 885 |
-
def delta_x_lower(self:InteractiveTSPlot):
|
| 886 |
-
with self.output_delta_x:
|
| 887 |
-
self.output_delta_x.clear_output(wait = True)
|
| 888 |
-
if self.print_flag: print("Delta before", self.delta_x)
|
| 889 |
-
self.delta_x /= 10
|
| 890 |
-
if self.print_flag: print("delta_x:", self.delta_x)
|
| 891 |
-
|
| 892 |
-
def delta_y_lower(self:InteractiveTSPlot):
|
| 893 |
-
with self.output_delta_y:
|
| 894 |
-
self.output_delta_y.clear_output(wait = True)
|
| 895 |
-
print("Delta before", self.delta_y)
|
| 896 |
-
self.delta_y = self.delta_y * 10
|
| 897 |
-
print("delta_y:", self.delta_y)
|
| 898 |
-
InteractiveTSPlot.delta_x_bigger = delta_x_bigger
|
| 899 |
-
InteractiveTSPlot.delta_y_bigger = delta_y_bigger
|
| 900 |
-
InteractiveTSPlot.delta_x_lower = delta_x_lower
|
| 901 |
-
InteractiveTSPlot.delta_y_lower = delta_y_lower
|
| 902 |
-
|
| 903 |
-
# %% ../nbs/xai.ipynb 38
|
| 904 |
-
def add_movement_buttons(self: InteractiveTSPlot):
|
| 905 |
-
self.button_left = Button(description="←")
|
| 906 |
-
self.button_right = Button(description="→")
|
| 907 |
-
self.button_up = Button(description="↑")
|
| 908 |
-
self.button_down = Button(description="↓")
|
| 909 |
-
|
| 910 |
-
self.button_step_x_up = Button(description="dx ↑")
|
| 911 |
-
self.button_step_x_down = Button(description="dx ↓")
|
| 912 |
-
self.button_step_y_up = Button(description="dy↑")
|
| 913 |
-
self.button_step_y_down = Button(description="dy↓")
|
| 914 |
-
|
| 915 |
-
|
| 916 |
-
# TODO: Arreglar que se pueda modificar el paso con el que se avanza. No se ve el output y no se modifica el valor
|
| 917 |
-
self.button_step_x_up.on_click(self.delta_x_bigger)
|
| 918 |
-
self.button_step_x_down.on_click(self.delta_x_lower)
|
| 919 |
-
self.button_step_y_up.on_click(self.delta_y_bigger)
|
| 920 |
-
self.button_step_y_down.on_click(self.delta_y_lower)
|
| 921 |
-
|
| 922 |
-
self.button_left.on_click(self.move_left)
|
| 923 |
-
self.button_right.on_click(self.move_right)
|
| 924 |
-
self.button_up.on_click(self.move_up)
|
| 925 |
-
self.button_down.on_click(self.move_down)
|
| 926 |
-
|
| 927 |
-
InteractiveTSPlot.add_movement_buttons = add_movement_buttons
|
| 928 |
-
|
| 929 |
-
# %% ../nbs/xai.ipynb 40
|
| 930 |
-
def setup_boxes(self: InteractiveTSPlot):
|
| 931 |
-
self.steps_x = VBox([self.button_step_x_up, self.button_step_x_down])
|
| 932 |
-
self.steps_y = VBox([self.button_step_y_up, self.button_step_y_down])
|
| 933 |
-
arrow_buttons = HBox([self.button_left, self.button_right, self.button_up, self.button_down, self.steps_x, self.steps_y])
|
| 934 |
-
hbox_layout = widgets.Layout(display='flex', flex_flow='row wrap', align_items='flex-start')
|
| 935 |
-
hbox = HBox(self.buttons, layout=hbox_layout)
|
| 936 |
-
box_layout = widgets.Layout(
|
| 937 |
-
display='flex',
|
| 938 |
-
flex_flow='column',
|
| 939 |
-
align_items='center',
|
| 940 |
-
width='100%'
|
| 941 |
-
)
|
| 942 |
-
if self.print_flag:
|
| 943 |
-
self.box = VBox([hbox, arrow_buttons, self.output_move, self.output_delta_x, self.output_delta_y, self.fig, self.output_windows], layout=box_layout)
|
| 944 |
-
else:
|
| 945 |
-
self.box = VBox([hbox, arrow_buttons, self.fig, self.output_windows], layout=box_layout)
|
| 946 |
-
|
| 947 |
-
InteractiveTSPlot.setup_boxes = setup_boxes
|
| 948 |
-
|
| 949 |
-
|
| 950 |
-
# %% ../nbs/xai.ipynb 41
|
| 951 |
-
def initial_plot(self: InteractiveTSPlot):
|
| 952 |
-
self.add_selected_features()
|
| 953 |
-
self.add_windows()
|
| 954 |
-
self.setup_style()
|
| 955 |
-
self.set_features_buttons()
|
| 956 |
-
self.add_movement_buttons()
|
| 957 |
-
self.setup_boxes()
|
| 958 |
-
InteractiveTSPlot.initial_plot = initial_plot
|
| 959 |
-
|
| 960 |
-
# %% ../nbs/xai.ipynb 42
|
| 961 |
-
def show(self : InteractiveTSPlot):
|
| 962 |
-
self.initial_plot()
|
| 963 |
-
display(self.box)
|
| 964 |
-
InteractiveTSPlot.show = show
|
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|
local_build_docker.sh
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
+
# Inicializa un array vacío
|
| 2 |
+
args=()
|
| 3 |
+
|
| 4 |
+
# Lee el archivo .env línea por línea
|
| 5 |
+
while IFS='=' read -r key value; do
|
| 6 |
+
if [[ $key != \#* && $key != '' ]]; then # Excluye comentarios y líneas vacías
|
| 7 |
+
args+=(--build-arg "$key=$value") # Agrega --build-arg y la variable como un elemento
|
| 8 |
+
fi
|
| 9 |
+
done < .env
|
| 10 |
+
|
| 11 |
+
echo "args: ${args[@]}"
|
| 12 |
+
read -p "Press enter to continue"
|
| 13 |
+
# Ejecuta docker build con los argumentos
|
| 14 |
+
docker build "${args[@]}" . -t dvatshf
|
local_exec_docker.sh
CHANGED
|
@@ -4,10 +4,25 @@ args=()
|
|
| 4 |
# Lee el archivo .env línea por línea
|
| 5 |
while IFS='=' read -r key value; do
|
| 6 |
if [[ $key != \#* && $key != '' ]]; then # Excluye comentarios y líneas vacías
|
| 7 |
-
args+=(
|
| 8 |
fi
|
| 9 |
done < .env
|
| 10 |
|
| 11 |
echo "args: ${args[@]}"
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 12 |
# Ejecuta docker build con los argumentos
|
| 13 |
-
docker
|
|
|
|
| 4 |
# Lee el archivo .env línea por línea
|
| 5 |
while IFS='=' read -r key value; do
|
| 6 |
if [[ $key != \#* && $key != '' ]]; then # Excluye comentarios y líneas vacías
|
| 7 |
+
args+=(-e "$key=$value") # Agrega --build-arg y la variable como un elemento
|
| 8 |
fi
|
| 9 |
done < .env
|
| 10 |
|
| 11 |
echo "args: ${args[@]}"
|
| 12 |
+
#read -p "Press enter to continue"
|
| 13 |
+
|
| 14 |
+
INTER=$1
|
| 15 |
+
|
| 16 |
+
flags=()
|
| 17 |
+
if((INTER == 1)); then
|
| 18 |
+
echo "INTERACTIVE"
|
| 19 |
+
flags+=(-it --entrypoint /bin/bash)
|
| 20 |
+
fi
|
| 21 |
+
|
| 22 |
+
flags+=("--gpus" "all")
|
| 23 |
+
|
| 24 |
+
echo "${flags[@]}"
|
| 25 |
+
|
| 26 |
+
#read -p "Press enter to continue"
|
| 27 |
# Ejecuta docker build con los argumentos
|
| 28 |
+
docker run "${flags[@]}" "${args[@]}" -t dvatshf
|
r_shiny_app/global.R
CHANGED
|
@@ -52,7 +52,7 @@ if(torch$cuda$is_available()){
|
|
| 52 |
|
| 53 |
# Python dependencies
|
| 54 |
print("--> py dependences | Tsai")
|
| 55 |
-
Sys.setenv(MPLCONFIGDIR = "/tmp/")
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| 56 |
tsai_data = reticulate::import("tsai.data.all")
|
| 57 |
print("--> py dependences | Wandb")
|
| 58 |
wandb = reticulate::import("wandb")
|
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@@ -85,9 +85,11 @@ DEFAULT_VALUES = list(metric_hdbscan = "euclidean",
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|
| 85 |
path_alpha = 5/10,
|
| 86 |
point_alpha = 1/10,
|
| 87 |
point_size = 1)
|
|
|
|
| 88 |
WANDB_ENTITY = Sys.getenv("WANDB_ENTITY")
|
| 89 |
WANDB_PROJECT = Sys.getenv("WANDB_PROJECT")
|
| 90 |
|
|
|
|
| 91 |
|
| 92 |
####################
|
| 93 |
# HELPER FUNCTIONS #
|
|
|
|
| 52 |
|
| 53 |
# Python dependencies
|
| 54 |
print("--> py dependences | Tsai")
|
| 55 |
+
Sys.setenv(MPLCONFIGDIR = "/tmp/")
|
| 56 |
tsai_data = reticulate::import("tsai.data.all")
|
| 57 |
print("--> py dependences | Wandb")
|
| 58 |
wandb = reticulate::import("wandb")
|
|
|
|
| 85 |
path_alpha = 5/10,
|
| 86 |
point_alpha = 1/10,
|
| 87 |
point_size = 1)
|
| 88 |
+
|
| 89 |
WANDB_ENTITY = Sys.getenv("WANDB_ENTITY")
|
| 90 |
WANDB_PROJECT = Sys.getenv("WANDB_PROJECT")
|
| 91 |
|
| 92 |
+
print("Wandb API Key -->", WANDB_API_KEY)
|
| 93 |
|
| 94 |
####################
|
| 95 |
# HELPER FUNCTIONS #
|