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5.75M
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95
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6.36k
5.75M
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5.75M
GENERanno
sequencelengths
6.36k
5.75M
GeneLM
sequencelengths
6.36k
5.75M
GeneMarkS2
sequencelengths
6.36k
5.75M
MetaGeneMark2
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6.36k
5.75M
Prodigal
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5.75M
MetaProdigal
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5.75M
Glimmer3
sequencelengths
6.36k
5.75M
46708ad459d482cf5c5533f3066a56ae
Archaeoglobus_fulgidus_genome_0
"GAAAATGGTTTAATCGGAAATTGAGTAGGAGGATAAAAGTCGCATGCTATTATAAATGAGATGCACTTTCGACACCTCGCGGAAGTATATAAATGAAAG(...TRUNCATED)
NC_000917.1 Archaeoglobus fulgidus DSM 4304, complete sequence
genome
2,178,400
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5b865b5df4ef3dbae1f27e3fc9be691b
Halobacterium_salinarum_genome_0
"GGGTGGGACTGCGGGCTATTCGACGTCGGTCGGATCGGCTGCCTCCCAGGCGTCCGGAACCTCGATGACGTACTGGCCGTCCTCCTGGAGCGCGATGAT(...TRUNCATED)
NZ_CP038631.1 Halobacterium salinarum strain 91-R6 chromosome, complete genome
genome
2,178,608
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3ac4cb093ef2760c679ba6ca3c5a934b
Halobacterium_salinarum_plasmid_1
"ACTCTTTATCGAGATGGTGAAAGGGACTCCGCTGTCAGGGAAATCACTCCTGTTTGCTCTCACGCGTCTTGACCGGAATAACCCGGAGAAAGAATGGTT(...TRUNCATED)
NZ_CP038632.1 Halobacterium salinarum strain 91-R6 plasmid pHSAL1, complete sequence
plasmid
148,406
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[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)
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[0,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)
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[0,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)
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709feb1f4a1f4ed342eb5c51727190e4
Halobacterium_salinarum_plasmid_2
"AGCCGCCATCAACCGCACGCAAAGCAGGATCGACCGGCGACGACAACGAGCACTGAATATTGGCGAAGGTGTCGCATTCACACCCGAGGACTTCTCCGA(...TRUNCATED)
NZ_CP038633.1 Halobacterium salinarum strain 91-R6 plasmid pHSAL2, complete sequence
plasmid
102,666
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[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)
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[0,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
323b1f38fb3ff752ada8707b939a5487
Natronomonas_pharaonis_genome_0
"GCCGCTTACCGGTCAATATCGGCGACCACGTCGTTGTGATACGCCAGATACGCCGCCCCAAGGTCGTGGTCGTCAGCGACGGTCAACCGGTGGCCGTCG(...TRUNCATED)
NC_007426.1 Natronomonas pharaonis DSM 2160, complete sequence
genome
2,595,221
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
[0,0,0,0,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1(...TRUNCATED)
[0,0,0,0,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1(...TRUNCATED)
[0,0,0,0,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1(...TRUNCATED)
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[0,0,0,0,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1(...TRUNCATED)
[0,0,0,0,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1(...TRUNCATED)
[0,0,0,0,0,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1,-1(...TRUNCATED)
7f1c0909326725c6b7f02130d219c583
Natronomonas_pharaonis_plasmid_1
"GCGTGACTGAAGACTTAGAGTTTGCGGTCGAGACGGACTGAAAACCCAGAACGGGATTGAAACATTACGGCGAATGGACGCTCGATATGACGTTTGACG(...TRUNCATED)
NC_007428.1 Natronomonas pharaonis DSM 2160 plasmid PL23, complete sequence
plasmid
23,486
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
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[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
506933120354080681358ebadaf13899
Natronomonas_pharaonis_plasmid_2
"GGTCGTGTCGCAAAGCGGTCTAGAGTTCAGTAGCAACTGACTCCCGTGAGGAACGGGACGCCTCTGGTGTCCATCCCAAGAGGTGTCCCATGCACGCCA(...TRUNCATED)
NC_007427.1 Natronomonas pharaonis DSM 2160 plasmid PL131, complete sequence
plasmid
130,989
[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
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bacb35c9327fb01212bd323b746fdfc8
Aeropyrum_pernix_genome_0
"AAATAATAATAAAAATTAAGTGACTCATGCATTATCCTACGAGGTAAAAATATGTTATAAATTGTCCCAGACTACCATCAATTTAGGGACAATAGTGTT(...TRUNCATED)
NC_000854.2 Aeropyrum pernix K1, complete sequence
genome
1,669,696
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[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
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[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0(...TRUNCATED)
b0279b74eee29d4d2ccfbc4d04104466
Methanocaldococcus_jannaschii_genome_0
"TACATTAGTGTTTATTACATTGAGAAACTTTATAATTAAAAAAGATTCATGTAAATTTCTTATTTGTTTATTTAGAGGTTTTAAATTTAATTTCTAAGG(...TRUNCATED)
NC_000909.1 Methanocaldococcus jannaschii DSM 2661, complete sequence
genome
1,664,970
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NC_001732.1 Methanocaldococcus jannaschii DSM 2661 plasmid pDSM2661_1, complete sequence
plasmid
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Prokaryotic Genome CDS Annotation Summary

Abouts

In this repository, we present the evaluation datasets for prokaryotic genome annotation tasked. Through comprehensive evaluations, GENERanno-cds-annotator achieves superior accuracy compared to traditional HMM-based methods (e.g., GLIMMER3, GeneMarkS2, Prodigal) and recent LLM-based approaches (e.g., GeneLM), while demonstrating exceptional generalization ability on archaeal genomes.

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