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14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-008 [Transcript ID] ENST00000326324 [bp] 3816 [Protein] 731aa [Translation ID] ENSP00000327229 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43731 [UniProt] P11362 [RefSeq] NM_023106 NP_075594 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-012 [Transcript ID] ENST00000397113 [bp] 3680 [Protein] 820aa [Translation ID] ENSP00000380302 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43732 [UniProt] P11362 [RefSeq] NM_001174065 NP_001167536 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-020 [Transcript ID] ENST00000397108 [bp] 2870 [Protein] 820aa [Translation ID] ENSP00000380297 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43732 [UniProt] P11362 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-201 [Transcript ID] ENST00000341462 [bp] 6054 [Protein] 367aa [Translation ID] ENSP00000340636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C1KBH7 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-204 [Transcript ID] ENST00000619564 [bp] 5482 [Protein] 228aa [Translation ID] ENSP00000484553 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5A958 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-011 [Transcript ID] ENST00000397103 [bp] 2953 [Protein] 733aa [Translation ID] ENSP00000380292 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EU09 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-036 [Transcript ID] ENST00000525001 [bp] 1155 [Protein] 298aa [Translation ID] ENSP00000434712 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNM3 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-037 [Transcript ID] ENST00000529552 [bp] 688 [Protein] 142aa [Translation ID] ENSP00000435283 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PKV7 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-038 [Transcript ID] ENST00000526742 [bp] 657 [Protein] 145aa [Translation ID] ENSP00000433569 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PKF2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-015 [Transcript ID] ENST00000413133 [bp] 587 [Protein] 107aa [Translation ID] ENSP00000400708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J205 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-028 [Transcript ID] ENST00000533668 [bp] 571 [Protein] 139aa [Translation ID] ENSP00000434869 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PN14 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-016 [Transcript ID] ENST00000434187 [bp] 529 [Protein] 55aa [Translation ID] ENSP00000392645 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J1L5 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-027 [Transcript ID] ENST00000530568 [bp] 467 [Protein] 85aa [Translation ID] ENSP00000434473 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PQ40 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-019 [Transcript ID] ENST00000440174 [bp] 389 [Protein] 1aa [Translation ID] ENSP00000398318 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-010 [Transcript ID] ENST00000487647 [bp] 1608 [Protein] 61aa [Translation ID] ENSP00000435254 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PKX3 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-039 [Transcript ID] ENST00000531196 [bp] 842 [Protein] 134aa [Translation ID] ENSP00000434800 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YE20 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-009 [Transcript ID] ENST00000484370 [bp] 826 [Protein] 150aa [Translation ID] ENSP00000433163 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P11362 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-017 [Transcript ID] ENST00000496629 [bp] 584 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-031 [Transcript ID] ENST00000526688 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-035 [Transcript ID] ENST00000527203 [bp] 556 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-018 [Transcript ID] ENST00000480571 [bp] 442 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-029 [Transcript ID] ENST00000530701 [bp] 276 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-024 [Transcript ID] ENST00000526570 [bp] 5528 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-005 [Transcript ID] ENST00000470826 [bp] 2281 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-006 [Transcript ID] ENST00000496296 [bp] 1898 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-025 [Transcript ID] ENST00000527114 [bp] 1499 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-023 [Transcript ID] ENST00000466021 [bp] 823 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-026 [Transcript ID] ENST00000527745 [bp] 790 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-033 [Transcript ID] ENST00000397090 [bp] 777 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-014 [Transcript ID] ENST00000474970 [bp] 764 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-034 [Transcript ID] ENST00000532386 [bp] 725 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-013 [Transcript ID] ENST00000464163 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-030 [Transcript ID] ENST00000533619 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-032 [Transcript ID] ENST00000524528 [bp] 486 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
14702518_t__FGFR1_011__ENST00000397103___Flags
|
[Name] FGFR1-022 [Transcript ID] ENST00000475621 [bp] 485 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGFR1-011 (ENST00000397103)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000077782;r=8:38412934-38457503;t=ENST00000397103
|
40/1438042988305.14_20150728002308-00136-ip-10-236-191-2_418837009_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
56f9d5f7_t__PDPK1_018__ENST00000569721___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-018 (ENST00000569721)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721
|
40/1438042989510.73_20150728002309-00107-ip-10-236-191-2_418598671_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
9e263d56__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/ExternalData?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923
|
40/1438042989510.73_20150728002309-00337-ip-10-236-191-2_429539596_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-001 [Transcript ID] ENST00000345127 [bp] 5811 [Protein] 831aa [Translation ID] ENSP00000345064 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8742 [UniProt] A0A024R0W7 Q96MT3 [RefSeq] NM_153026 NP_694571 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-201 [Transcript ID] ENST00000455697 [bp] 4253 [Protein] 831aa [Translation ID] ENSP00000401060 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8742 [UniProt] A0A024R0W7 Q96MT3 [RefSeq] NM_001144882 NM_001144883 NP_001138354 NP_001138355 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-005 [Transcript ID] ENST00000445766 [bp] 4080 [Protein] 831aa [Translation ID] ENSP00000398947 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8742 [UniProt] A0A024R0W7 Q96MT3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-003 [Transcript ID] ENST00000548696 [bp] 3584 [Protein] 831aa [Translation ID] ENSP00000448359 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8742 [UniProt] A0A024R0W7 Q96MT3 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-004 [Transcript ID] ENST00000552240 [bp] 3324 [Protein] 831aa [Translation ID] ENSP00000449819 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8742 [UniProt] A0A024R0W7 Q96MT3 [RefSeq] NM_001144881 NP_001138353 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-007 [Transcript ID] ENST00000551050 [bp] 693 [Protein] 119aa [Translation ID] ENSP00000446970 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8W1J1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-006 [Transcript ID] ENST00000552108 [bp] 585 [Protein] 159aa [Translation ID] ENSP00000447870 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VUG8 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-002 [Transcript ID] ENST00000547113 [bp] 456 [Protein] 110aa [Translation ID] ENSP00000446699 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8W1Q8 Q687H3 Q687H4 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
4406c30b_PRICKLE1_001__ENST00000345127___Flags
|
[Name] PRICKLE1-008 [Transcript ID] ENST00000552200 [bp] 453 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PRICKLE1-001 (ENST00000345127)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000139174;r=12:42456754-42589676;t=ENST00000345127
|
40/1438042981921.1_20150728002301-00215-ip-10-236-191-2_428100844_0.json
|
863b7581_ene__CACNA1F__ENSG00000102001___Protein
|
[Name] CACNA1F-007 [Transcript ID] ENST00000376265 [bp] 6070 [Translation ID] ENSP00000365441 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS35253 [UniProt] O60840 [RefSeq] NM_005183 NP_005174 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Protein]
|
1977aa
|
[
[
"1",
"9",
"7",
"7",
"a",
"a"
],
[
"1",
"9",
"6",
"6",
"a",
"a"
],
[
"1",
"9",
"1",
"2",
"a",
"a"
],
[
"1",
"1",
"6",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
863b7581_ene__CACNA1F__ENSG00000102001___Protein
|
[Name] CACNA1F-001 [Transcript ID] ENST00000323022 [bp] 6037 [Translation ID] ENSP00000321618 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59167 [UniProt] O60840 [RefSeq] NM_001256789 NP_001243718 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Protein]
|
1966aa
|
[
[
"1",
"9",
"7",
"7",
"a",
"a"
],
[
"1",
"9",
"6",
"6",
"a",
"a"
],
[
"1",
"9",
"1",
"2",
"a",
"a"
],
[
"1",
"1",
"6",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
863b7581_ene__CACNA1F__ENSG00000102001___Protein
|
[Name] CACNA1F-002 [Transcript ID] ENST00000376251 [bp] 5813 [Translation ID] ENSP00000365427 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59166 [UniProt] O60840 [RefSeq] NM_001256790 NP_001243719 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein]
|
1912aa
|
[
[
"1",
"9",
"7",
"7",
"a",
"a"
],
[
"1",
"9",
"6",
"6",
"a",
"a"
],
[
"1",
"9",
"1",
"2",
"a",
"a"
],
[
"1",
"1",
"6",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
863b7581_ene__CACNA1F__ENSG00000102001___Protein
|
[Name] CACNA1F-005 [Transcript ID] ENST00000486943 [bp] 662 [Translation ID] ENSP00000418961 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C549 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein]
|
116aa
|
[
[
"1",
"9",
"7",
"7",
"a",
"a"
],
[
"1",
"9",
"6",
"6",
"a",
"a"
],
[
"1",
"9",
"1",
"2",
"a",
"a"
],
[
"1",
"1",
"6",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
863b7581_ene__CACNA1F__ENSG00000102001___Protein
|
[Name] CACNA1F-006 [Transcript ID] ENST00000480889 [bp] 505 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein]
|
No protein
|
[
[
"1",
"9",
"7",
"7",
"a",
"a"
],
[
"1",
"9",
"6",
"6",
"a",
"a"
],
[
"1",
"9",
"1",
"2",
"a",
"a"
],
[
"1",
"1",
"6",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
863b7581_ene__CACNA1F__ENSG00000102001___Protein
|
[Name] CACNA1F-004 [Transcript ID] ENST00000481035 [bp] 714 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein]
|
No protein
|
[
[
"1",
"9",
"7",
"7",
"a",
"a"
],
[
"1",
"9",
"6",
"6",
"a",
"a"
],
[
"1",
"9",
"1",
"2",
"a",
"a"
],
[
"1",
"1",
"6",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CACNA1F (ENSG00000102001)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000102001;r=X:49205063-49233371
|
40/1438042989510.73_20150728002309-00082-ip-10-236-191-2_436213792_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000261799 [bp] 5717 [Protein] 1106aa [Translation ID] ENSP00000261799 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4303 [UniProt] P09619 [RefSeq] NM_002609 NP_002600 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
|
PDGFRB-001
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000517488 [bp] 822 [Protein] 146aa [Translation ID] ENSP00000429218 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJ14 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PDGFRB-004
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000517957 [bp] 568 [Protein] 174aa [Translation ID] ENSP00000430715 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RII0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name]
|
PDGFRB-003
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000520579 [bp] 3860 [Protein] 239aa [Translation ID] ENSP00000430026 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E5RH16 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name]
|
PDGFRB-002
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000523456 [bp] 1023 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PDGFRB-010
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000519575 [bp] 712 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PDGFRB-006
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000517660 [bp] 611 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PDGFRB-011
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000520851 [bp] 406 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PDGFRB-008
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000521723 [bp] 400 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
PDGFRB-007
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000520229 [bp] 738 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PDGFRB-005
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
63f2d5d3___PDGFRB_001__ENST00000261799___Name
|
[Transcript ID] ENST00000522466 [bp] 296 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PDGFRB-009
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDGFRB-001 (ENST00000261799)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000113721;r=5:150113837-150155860;t=ENST00000261799
|
40/1438042981921.1_20150728002301-00287-ip-10-236-191-2_410145584_0.json
|
31e770cf_t__NUMA1_005__ENST00000537217___Flags
|
[Name] NUMA1-001 [Transcript ID] ENST00000393695 [bp] 7343 [Protein] 2115aa [Translation ID] ENSP00000377298 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31633 [UniProt] Q14980 [RefSeq] NM_006185 NP_006176 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NUMA1-005 (ENST00000537217)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000137497;r=11:72015429-72080474;t=ENST00000537217
|
40/1438042988305.14_20150728002308-00169-ip-10-236-191-2_428593056_0.json
|
31e770cf_t__NUMA1_005__ENST00000537217___Flags
|
[Name] NUMA1-002 [Transcript ID] ENST00000358965 [bp] 7227 [Protein] 2101aa [Translation ID] ENSP00000351851 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS66156 [UniProt] A0A024R5M9 Q14980 [RefSeq] NM_001286561 NP_001273490 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NUMA1-005 (ENST00000537217)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000137497;r=11:72015429-72080474;t=ENST00000537217
|
40/1438042988305.14_20150728002308-00169-ip-10-236-191-2_428593056_0.json
|
31e770cf_t__NUMA1_005__ENST00000537217___Flags
|
[Name] NUMA1-203 [Transcript ID] ENST00000620566 [bp] 7012 [Protein] 2101aa [Translation ID] ENSP00000478624 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS66156 [UniProt] A0A024R5M9 Q14980 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NUMA1-005 (ENST00000537217)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000137497;r=11:72015429-72080474;t=ENST00000537217
|
40/1438042988305.14_20150728002308-00169-ip-10-236-191-2_428593056_0.json
|
31e770cf_t__NUMA1_005__ENST00000537217___Flags
|
[Name] NUMA1-202 [Transcript ID] ENST00000616538 [bp] 6998 [Protein] 2099aa [Translation ID] ENSP00000481541 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WY61 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NUMA1-005 (ENST00000537217)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000137497;r=11:72015429-72080474;t=ENST00000537217
|
40/1438042988305.14_20150728002308-00169-ip-10-236-191-2_428593056_0.json
|
31e770cf_t__NUMA1_005__ENST00000537217___Flags
|
[Name] NUMA1-201 [Transcript ID] ENST00000613205 [bp] 3940 [Protein] 979aa [Translation ID] ENSP00000480172 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q14980 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: NUMA1-005 (ENST00000537217)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000137497;r=11:72015429-72080474;t=ENST00000537217
|
40/1438042988305.14_20150728002308-00169-ip-10-236-191-2_428593056_0.json
|
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