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9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
9f5f8d8f__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000474706 | 32/1438042988650.53_20150728002308-00301-ip-10-236-191-2_432022079_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
e9595d39___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14213713-14228896;t=ENST00000589284 | 32/1438042988650.53_20150728002308-00066-ip-10-236-191-2_440475120_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-005 [Transcript ID] ENST00000452699 [bp] 3981 [Protein] 1175aa [Translation ID] ENSP00000413307 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44073 [UniProt] Q9NQ11 [RefSeq] NM_001141973 NP_001135445 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-001 [Transcript ID] ENST00000326735 [bp] 3840 [Protein] 1180aa [Translation ID] ENSP00000327214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS175 [UniProt] Q9NQ11 [RefSeq] NM_022089 NP_071372 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-002 [Transcript ID] ENST00000341676 [bp] 3681 [Protein] 1158aa [Translation ID] ENSP00000341115 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44072 [UniProt] Q9NQ11 [RefSeq] NM_001141974 NP_001135446 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-201 [Transcript ID] ENST00000617114 [bp] 1723 [Protein] 228aa [Translation ID] ENSP00000478781 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUM9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-007 [Transcript ID] ENST00000502418 [bp] 1201 [Protein] 398aa [Translation ID] ENSP00000423065 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y953 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-009 [Transcript ID] ENST00000510069 [bp] 962 [Protein] 321aa [Translation ID] ENSP00000424313 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K0 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-014 [Transcript ID] ENST00000503552 [bp] 774 [Protein] 258aa [Translation ID] ENSP00000421126 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8I1 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-012 [Transcript ID] ENST00000506174 [bp] 573 [Protein] 191aa [Translation ID] ENSP00000424393 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K4 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-010 [Transcript ID] ENST00000509619 [bp] 570 [Protein] 191aa [Translation ID] ENSP00000422668 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8Z6 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-011 [Transcript ID] ENST00000511957 [bp] 569 [Protein] 190aa [Translation ID] ENSP00000427241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAI7 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-008 [Transcript ID] ENST00000508222 [bp] 562 [Protein] 188aa [Translation ID] ENSP00000422227 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8V5 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-004 [Transcript ID] ENST00000466561 [bp] 1851 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-003 [Transcript ID] ENST00000463860 [bp] 1639 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-006 [Transcript ID] ENST00000502860 [bp] 687 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
a26a30b9__ATP13A2_004__ENST00000466561___Flags | [Name] ATP13A2-013 [Transcript ID] ENST00000509392 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: ATP13A2-004 (ENST00000466561) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000159363;r=1:17312454-17318353;t=ENST00000466561 | 34/1438042981753.21_20150728002301-00293-ip-10-236-191-2_423905223_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-002 [Transcript ID] ENST00000586534 [bp] 1746 [Protein] 363aa [Translation ID] ENSP00000467024 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12289 [UniProt] A0A024R7G8 P54725 [RefSeq] NM_005053 NP_005044 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-001 [Transcript ID] ENST00000316856 [bp] 1736 [Protein] 362aa [Translation ID] ENSP00000321365 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59358 [UniProt] P54725 [RefSeq] NM_001270362 NP_001257291 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-005 [Transcript ID] ENST00000592268 [bp] 1526 [Protein] 308aa [Translation ID] ENSP00000468674 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59357 [UniProt] P54725 [RefSeq] NM_001270363 NP_001257292 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-008 [Transcript ID] ENST00000590881 [bp] 999 [Protein] 150aa [Translation ID] ENSP00000467628 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EQ16 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-004 [Transcript ID] ENST00000593114 [bp] 1691 [Protein] 139aa [Translation ID] ENSP00000466968 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] K7ENJ0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-003 [Transcript ID] ENST00000591499 [bp] 1350 [Protein] 142aa [Translation ID] ENSP00000466243 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] K7ELW1 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-010 [Transcript ID] ENST00000586375 [bp] 894 [Protein] 62aa [Translation ID] ENSP00000466226 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] K7ELU6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-007 [Transcript ID] ENST00000588826 [bp] 832 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-006 [Transcript ID] ENST00000588329 [bp] 1034 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
d0001a6d___RAD23A_001__ENST00000316856___Flags | [Name] RAD23A-009 [Transcript ID] ENST00000591467 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD23A-001 (ENST00000316856) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000179262;r=19:12945876-12953623;t=ENST00000316856 | 34/1438044271733.81_20150728004431-00107-ip-10-236-191-2_416866630_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-001 [Transcript ID] ENST00000375549 [bp] 1439 [Protein] 159aa [Translation ID] ENSP00000364699 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31678 [UniProt] O14521 [RefSeq] NM_003002 NP_002993 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-003 [Transcript ID] ENST00000528048 [bp] 905 [Protein] 85aa [Translation ID] ENSP00000436217 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60959 [UniProt] O14521 [RefSeq] NM_001276503 NP_001263432 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-006 [Transcript ID] ENST00000526592 [bp] 861 [Protein] 143aa [Translation ID] ENSP00000432005 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60958 [UniProt] O14521 [RefSeq] NM_001276506 NP_001263435 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-005 [Transcript ID] ENST00000525291 [bp] 790 [Protein] 120aa [Translation ID] ENSP00000436669 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60960 [UniProt] O14521 [RefSeq] NM_001276504 NP_001263433 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-201 [Transcript ID] ENST00000614349 [bp] 516 [Protein] 143aa [Translation ID] ENSP00000480666 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60958 [UniProt] O14521 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-004 [Transcript ID] ENST00000528021 [bp] 1071 [Protein] 104aa [Translation ID] ENSP00000432465 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V173 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-002 [Transcript ID] ENST00000528182 [bp] 754 [Protein] 131aa [Translation ID] ENSP00000435475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PK73 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-007 [Transcript ID] ENST00000530923 [bp] 717 [Protein] 101aa [Translation ID] ENSP00000432946 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YD41 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
b8fd9893___Gene__SDHD__ENSG00000204370___Flags | [Name] SDHD-008 [Transcript ID] ENST00000534010 [bp] 460 [Protein] 55aa [Translation ID] ENSP00000433202 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YD96 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Structural variation - Gene: SDHD (ENSG00000204370) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/StructuralVariation_Gene?db=core;g=ENSG00000204370;r=11:111957497-111990353;t=ENST00000375549 | 34/1438043058631.99_20150728002418-00094-ip-10-236-191-2_433000528_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-001 [Transcript ID] ENST00000261292 [bp] 10441 [Protein] 500aa [Translation ID] ENSP00000261292 [CCDS] CCDS11938 [UniProt] A0A024R2B5 Q9Y5X9 [RefSeq] NM_006033 NP_006024 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-002 [Transcript ID] ENST00000427224 [bp] 1760 [Protein] 426aa [Translation ID] ENSP00000387978 [CCDS] CCDS77187 [UniProt] B4DTR8 [RefSeq] NM_001308006 NP_001294935 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-004 [Transcript ID] ENST00000577628 [bp] 2323 [Protein] 390aa [Translation ID] ENSP00000463835 [CCDS] - [UniProt] J3QQQ0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-003 [Transcript ID] ENST00000580036 [bp] 1453 [Protein] 354aa [Translation ID] ENSP00000462420 [CCDS] - [UniProt] Q9Y5X9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-006 [Transcript ID] ENST00000583083 [bp] 505 [Protein] 24aa [Translation ID] ENSP00000463077 [CCDS] - [UniProt] J3KTN7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-007 [Transcript ID] ENST00000579750 [bp] 565 [Protein] 188aa [Translation ID] ENSP00000462480 [CCDS] - [UniProt] A0A075B751 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Non stop decay | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
2adf5b00___Gene__LIPG__ENSG00000101670___Biotype | [Name] LIPG-005 [Transcript ID] ENST00000623277 [bp] 3548 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype] | TEC | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIPG (ENSG00000101670) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101670;r=18:49560699-49599182 | 34/1438044271733.81_20150728004431-00004-ip-10-236-191-2_413914008_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-202 [Transcript ID] ENST00000444521 [bp] 2827 [Protein] 246aa [Translation ID] ENSP00000413218 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS72690 [UniProt] A0A0A0MT35 [RefSeq] NM_001195736 NP_001182665 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-001 [Transcript ID] ENST00000419916 [bp] 2749 [Protein] 228aa [Translation ID] ENSP00000394405 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44 [UniProt] Q8TBF2 [RefSeq] NM_001195737 NM_152371 NP_001182666 NP_689584 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-201 [Transcript ID] ENST00000378425 [bp] 2665 [Protein] 192aa [Translation ID] ENSP00000367682 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS72691 [UniProt] A0A0A0MRV4 [RefSeq] NM_001195740 NP_001182669 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-014 [Transcript ID] ENST00000537325 [bp] 1096 [Protein] 191aa [Translation ID] ENSP00000443605 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55564 [UniProt] Q8TBF2 [RefSeq] NM_001195741 NP_001182670 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-002 [Transcript ID] ENST00000378424 [bp] 2765 [Protein] 231aa [Translation ID] ENSP00000367681 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KPF5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-003 [Transcript ID] ENST00000378427 [bp] 2689 [Protein] 213aa [Translation ID] ENSP00000367684 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KPF6 [RefSeq] NM_001195738 NP_001182667 [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-011 [Transcript ID] ENST00000465233 [bp] 589 [Protein] 197aa [Translation ID] ENSP00000462185 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KRV9 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-010 [Transcript ID] ENST00000498083 [bp] 464 [Protein] 154aa [Translation ID] ENSP00000463127 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QKK8 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-004 [Transcript ID] ENST00000484099 [bp] 2577 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] NR_036638 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-009 [Transcript ID] ENST00000464043 [bp] 946 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-006 [Transcript ID] ENST00000493183 [bp] 840 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-007 [Transcript ID] ENST00000474659 [bp] 785 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-012 [Transcript ID] ENST00000481683 [bp] 689 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-005 [Transcript ID] ENST00000476686 [bp] 2506 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
15100d30__FAM213B_001__ENST00000419916___Flags | [Name] FAM213B-013 [Transcript ID] ENST00000477045 [bp] 619 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FAM213B-001 (ENST00000419916) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000157870;r=1:2586775-2591468;t=ENST00000419916 | 34/1438043058631.99_20150728002418-00049-ip-10-236-191-2_432041899_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
a12a9f37_t__PDPK1_010__ENST00000464702___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-010 (ENST00000464702) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000464702 | 34/1438044271733.81_20150728004431-00275-ip-10-236-191-2_422888715_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
48a1c964__SYNGAP1_009__ENST00000449372___Flags | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: SYNGAP1-009 (ENST00000449372) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000197283;r=6:33388032-33415710;t=ENST00000449372 | 34/1438044271733.81_20150728004431-00168-ip-10-236-191-2_421161620_0.json |
b6618b69___PIK3R1_011__ENST00000521409___Flags | [Name] PIK3R1-001 [Transcript ID] ENST00000521381 [bp] 7011 [Protein] 724aa [Translation ID] ENSP00000428056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3993 [UniProt] P27986 [RefSeq] NM_181523 NP_852664 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-011 (ENST00000521409) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68288695-68294612;t=ENST00000521409 | 34/1438042981753.21_20150728002301-00272-ip-10-236-191-2_419984165_0.json |
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