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1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
1e0d7508__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000491073 | 8/1438042988511.77_20150728002308-00329-ip-10-236-191-2_433963771_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-003 [Transcript ID] ENST00000521315 [bp] 1046 [Protein] 191aa [Translation ID] ENSP00000430410 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55209 [UniProt] A0A0A0MTC9 [RefSeq] NM_001172357 NP_001165828 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-001 [Transcript ID] ENST00000318561 [bp] 997 [Protein] 197aa [Translation ID] ENSP00000316152 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43722 [UniProt] P11686 [RefSeq] NM_001172410 NM_003018 NP_001165881 NP_003009 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-010 [Transcript ID] ENST00000522109 [bp] 921 [Protein] 150aa [Translation ID] ENSP00000429496 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RI92 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-011 [Transcript ID] ENST00000437090 [bp] 773 [Protein] 161aa [Translation ID] ENSP00000407931 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JYF6 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-007 [Transcript ID] ENST00000524255 [bp] 681 [Protein] 144aa [Translation ID] ENSP00000429552 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RI64 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-006 [Transcript ID] ENST00000520605 [bp] 519 [Protein] 155aa [Translation ID] ENSP00000430266 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RG20 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-008 [Transcript ID] ENST00000523296 [bp] 395 [Protein] 125aa [Translation ID] ENSP00000429619 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RHW5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-014 [Transcript ID] ENST00000522880 [bp] 1000 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-005 [Transcript ID] ENST00000524318 [bp] 993 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-013 [Transcript ID] ENST00000524350 [bp] 538 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-009 [Transcript ID] ENST00000518615 [bp] 377 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
bc55e664_t__SFTPC_013__ENST00000524350___Flags | [Name] SFTPC-012 [Transcript ID] ENST00000522630 [bp] 227 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SFTPC-013 (ENST00000524350) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000168484;r=8:22158613-22159799;t=ENST00000524350 | 8/1438043060830.93_20150728002420-00129-ip-10-236-191-2_430920449_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-001 [Transcript ID] ENST00000389243 [bp] 5157 [Protein] 301aa [Translation ID] ENSP00000373895 [CCDS] CCDS31803 [UniProt] Q14863 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-002 [Transcript ID] ENST00000333640 [bp] 2474 [Protein] 301aa [Translation ID] ENSP00000330190 [CCDS] CCDS31803 [UniProt] Q14863 [RefSeq] NM_002702 NP_002693 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-003 [Transcript ID] ENST00000550824 [bp] 2184 [Protein] 301aa [Translation ID] ENSP00000448389 [CCDS] CCDS31803 [UniProt] Q14863 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-007 [Transcript ID] ENST00000547855 [bp] 207 [Protein] 29aa [Translation ID] ENSP00000448266 [CCDS] - [UniProt] F8VSI9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-005 [Transcript ID] ENST00000547854 [bp] 678 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-004 [Transcript ID] ENST00000549309 [bp] 556 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-008 [Transcript ID] ENST00000552305 [bp] 545 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-009 [Transcript ID] ENST00000548692 [bp] 395 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
187b53b2___POU6F1_002__ENST00000333640___Biotype | [Name] POU6F1-006 [Transcript ID] ENST00000546685 [bp] 364 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POU6F1-002 (ENST00000333640) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000184271;r=12:51189161-51198167;t=ENST00000333640 | 8/1438042986022.41_20150728002306-00298-ip-10-236-191-2_436224616_0.json |
aa4b7497_ene__CACNA1F__ENSG00000102001___Biotype | [Name] CACNA1F-007 [Transcript ID] ENST00000376265 [bp] 6070 [Protein] 1977aa [Translation ID] ENSP00000365441 [CCDS] CCDS35253 [UniProt] O60840 [RefSeq] NM_005183 NP_005174 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
aa4b7497_ene__CACNA1F__ENSG00000102001___Biotype | [Name] CACNA1F-001 [Transcript ID] ENST00000323022 [bp] 6037 [Protein] 1966aa [Translation ID] ENSP00000321618 [CCDS] CCDS59167 [UniProt] O60840 [RefSeq] NM_001256789 NP_001243718 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
aa4b7497_ene__CACNA1F__ENSG00000102001___Biotype | [Name] CACNA1F-002 [Transcript ID] ENST00000376251 [bp] 5813 [Protein] 1912aa [Translation ID] ENSP00000365427 [CCDS] CCDS59166 [UniProt] O60840 [RefSeq] NM_001256790 NP_001243719 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
aa4b7497_ene__CACNA1F__ENSG00000102001___Biotype | [Name] CACNA1F-005 [Transcript ID] ENST00000486943 [bp] 662 [Protein] 116aa [Translation ID] ENSP00000418961 [CCDS] - [UniProt] H7C549 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
aa4b7497_ene__CACNA1F__ENSG00000102001___Biotype | [Name] CACNA1F-006 [Transcript ID] ENST00000480889 [bp] 505 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
aa4b7497_ene__CACNA1F__ENSG00000102001___Biotype | [Name] CACNA1F-004 [Transcript ID] ENST00000481035 [bp] 714 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-008 [Transcript ID] ENST00000509001 [bp] 1330 [Protein] 288aa [Translation ID] ENSP00000422031 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30969 [UniProt] P45379 [RefSeq] NM_001276347 NP_001263276 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-001 [Transcript ID] ENST00000367322 [bp] 1132 [Protein] 285aa [Translation ID] ENSP00000356291 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30968 [UniProt] P45379 [RefSeq] NM_001001431 NP_001001431 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-005 [Transcript ID] ENST00000367318 [bp] 1122 [Protein] 288aa [Translation ID] ENSP00000356287 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30969 [UniProt] P45379 [RefSeq] NM_001001430 NP_001001430 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-201 [Transcript ID] ENST00000236918 [bp] 1098 [Protein] 298aa [Translation ID] ENSP00000236918 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73003 [UniProt] P45379 [RefSeq] NM_000364 NM_001276345 NP_000355 NP_001263274 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-204 [Transcript ID] ENST00000367317 [bp] 1050 [Protein] 282aa [Translation ID] ENSP00000356286 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73002 [UniProt] A0A0A0MRJ5 [RefSeq] NM_001001432 NP_001001432 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-003 [Transcript ID] ENST00000367320 [bp] 1007 [Protein] 255aa [Translation ID] ENSP00000356289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60390 [UniProt] P45379 [RefSeq] NM_001276346 NP_001263275 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-202 [Transcript ID] ENST00000360372 [bp] 969 [Protein] 255aa [Translation ID] ENSP00000353535 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS60390 [UniProt] P45379 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-206 [Transcript ID] ENST00000458432 [bp] 1182 [Protein] 226aa [Translation ID] ENSP00000387874 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q7Z554 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-205 [Transcript ID] ENST00000421663 [bp] 1084 [Protein] 226aa [Translation ID] ENSP00000404134 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q7Z554 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-203 [Transcript ID] ENST00000367315 [bp] 1083 [Protein] 291aa [Translation ID] ENSP00000356284 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0A0MRJ4 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-002 [Transcript ID] ENST00000438742 [bp] 870 [Protein] 271aa [Translation ID] ENSP00000414036 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPW4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-010 [Transcript ID] ENST00000455702 [bp] 565 [Protein] 180aa [Translation ID] ENSP00000402238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPN8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-014 [Transcript ID] ENST00000422165 [bp] 386 [Protein] 114aa [Translation ID] ENSP00000395163 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JDF8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-012 [Transcript ID] ENST00000412633 [bp] 349 [Protein] 98aa [Translation ID] ENSP00000408731 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JM61 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-011 [Transcript ID] ENST00000460780 [bp] 2218 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-006 [Transcript ID] ENST00000466570 [bp] 793 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-018 [Transcript ID] ENST00000476888 [bp] 516 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-015 [Transcript ID] ENST00000475686 [bp] 301 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-017 [Transcript ID] ENST00000477035 [bp] 234 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-007 [Transcript ID] ENST00000494095 [bp] 3014 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-004 [Transcript ID] ENST00000491504 [bp] 2308 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-019 [Transcript ID] ENST00000515042 [bp] 1158 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-022 [Transcript ID] ENST00000503459 [bp] 699 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-021 [Transcript ID] ENST00000445079 [bp] 666 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
c69a1cca__Gene__TNNT2__ENSG00000118194___Flags | [Name] TNNT2-020 [Transcript ID] ENST00000472177 [bp] 559 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: TNNT2 (ENSG00000118194) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000118194;r=1:201359008-201377762 | 8/1438043060830.93_20150728002420-00334-ip-10-236-191-2_433666518_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-001 [Transcript ID] ENST00000230538 [bp] 6547 [Protein] 1823aa [Translation ID] ENSP00000230538 [CCDS] CCDS43491 [UniProt] A0A0A0MQS9 [RefSeq] NM_001105206 NP_001098676 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-008 [Transcript ID] ENST00000522006 [bp] 6438 [Protein] 1816aa [Translation ID] ENSP00000429488 [CCDS] CCDS34514 [UniProt] A0A0A0MTC7 [RefSeq] NM_001105207 NM_002290 NP_001098677 NP_002281 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-009 [Transcript ID] ENST00000389463 [bp] 6297 [Protein] 1816aa [Translation ID] ENSP00000374114 [CCDS] CCDS34514 [UniProt] A0A0A0MTC7 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-012 [Transcript ID] ENST00000424408 [bp] 5983 [Protein] 1816aa [Translation ID] ENSP00000416470 [CCDS] CCDS34514 [UniProt] A0A0A0MTC7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-005 [Transcript ID] ENST00000368638 [bp] 1061 [Protein] 120aa [Translation ID] ENSP00000357627 [CCDS] CCDS43492 [UniProt] Q16363 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-010 [Transcript ID] ENST00000453937 [bp] 645 [Protein] 120aa [Translation ID] ENSP00000398226 [CCDS] CCDS43492 [UniProt] Q16363 [RefSeq] NM_001105208 NM_001105209 NP_001098678 NP_001098679 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-011 [Transcript ID] ENST00000521398 [bp] 1330 [Protein] 331aa [Translation ID] ENSP00000430336 [CCDS] - [UniProt] E5RFQ2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-002 [Transcript ID] ENST00000431543 [bp] 1080 [Protein] 129aa [Translation ID] ENSP00000412136 [CCDS] - [UniProt] Q6LET9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-007 [Transcript ID] ENST00000521732 [bp] 729 [Protein] 187aa [Translation ID] ENSP00000427865 [CCDS] - [UniProt] H0YAQ5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-003 [Transcript ID] ENST00000368640 [bp] 672 [Protein] 178aa [Translation ID] ENSP00000357629 [CCDS] - [UniProt] H0Y351 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-015 [Transcript ID] ENST00000519932 [bp] 588 [Protein] 107aa [Translation ID] ENSP00000428583 [CCDS] - [UniProt] E5RHF3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-006 [Transcript ID] ENST00000455073 [bp] 554 [Protein] 120aa [Translation ID] ENSP00000408604 [CCDS] - [UniProt] Q16363 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-016 [Transcript ID] ENST00000243219 [bp] 541 [Protein] 88aa [Translation ID] ENSP00000243219 [CCDS] - [UniProt] E5RFD7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-014 [Transcript ID] ENST00000521690 [bp] 539 [Protein] 81aa [Translation ID] ENSP00000430415 [CCDS] - [UniProt] E5RK79 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-019 [Transcript ID] ENST00000523765 [bp] 1054 [Protein] 188aa [Translation ID] ENSP00000427837 [CCDS] - [UniProt] H0YAP9 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-017 [Transcript ID] ENST00000524032 [bp] 559 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-004 [Transcript ID] ENST00000423735 [bp] 331 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-013 [Transcript ID] ENST00000521187 [bp] 2725 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-022 [Transcript ID] ENST00000604740 [bp] 694 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-020 [Transcript ID] ENST00000519245 [bp] 587 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-021 [Transcript ID] ENST00000521693 [bp] 579 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
b2bb51ac__Gene__LAMA4__ENSG00000112769___Biotype | [Name] LAMA4-018 [Transcript ID] ENST00000518842 [bp] 480 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
e7ad4350_ene__CACNA1F__ENSG00000102001___Flags | [Name] CACNA1F-007 [Transcript ID] ENST00000376265 [bp] 6070 [Protein] 1977aa [Translation ID] ENSP00000365441 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS35253 [UniProt] O60840 [RefSeq] NM_005183 NP_005174 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
e7ad4350_ene__CACNA1F__ENSG00000102001___Flags | [Name] CACNA1F-001 [Transcript ID] ENST00000323022 [bp] 6037 [Protein] 1966aa [Translation ID] ENSP00000321618 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59167 [UniProt] O60840 [RefSeq] NM_001256789 NP_001243718 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
e7ad4350_ene__CACNA1F__ENSG00000102001___Flags | [Name] CACNA1F-002 [Transcript ID] ENST00000376251 [bp] 5813 [Protein] 1912aa [Translation ID] ENSP00000365427 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59166 [UniProt] O60840 [RefSeq] NM_001256790 NP_001243719 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
e7ad4350_ene__CACNA1F__ENSG00000102001___Flags | [Name] CACNA1F-005 [Transcript ID] ENST00000486943 [bp] 662 [Protein] 116aa [Translation ID] ENSP00000418961 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C549 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
e7ad4350_ene__CACNA1F__ENSG00000102001___Flags | [Name] CACNA1F-006 [Transcript ID] ENST00000480889 [bp] 505 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
e7ad4350_ene__CACNA1F__ENSG00000102001___Flags | [Name] CACNA1F-004 [Transcript ID] ENST00000481035 [bp] 714 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: CACNA1F (ENSG00000102001) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000102001;r=X:49205063-49233371 | 8/1438042986022.41_20150728002306-00170-ip-10-236-191-2_427548668_0.json |
fc8adbbe__Gene__LAMA4__ENSG00000112769___UniProt | [Name] LAMA4-001 [Transcript ID] ENST00000230538 [bp] 6547 [Protein] 1823aa [Translation ID] ENSP00000230538 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43491 [RefSeq] NM_001105206 NP_001098676 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [UniProt] | A0A0A0MQS9 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
fc8adbbe__Gene__LAMA4__ENSG00000112769___UniProt | [Name] LAMA4-008 [Transcript ID] ENST00000522006 [bp] 6438 [Protein] 1816aa [Translation ID] ENSP00000429488 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34514 [RefSeq] NM_001105207 NM_002290 NP_001098677 NP_002281 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [UniProt] | A0A0A0MTC7 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
fc8adbbe__Gene__LAMA4__ENSG00000112769___UniProt | [Name] LAMA4-009 [Transcript ID] ENST00000389463 [bp] 6297 [Protein] 1816aa [Translation ID] ENSP00000374114 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34514 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [UniProt] | A0A0A0MTC7 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: LAMA4 (ENSG00000112769) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000112769;r=6:112108760-112254939 | 8/1438042986022.41_20150728002306-00103-ip-10-236-191-2_438496041_0.json |
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