peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/scipy
/integrate
/_ivp
/base.py
| import numpy as np | |
| def check_arguments(fun, y0, support_complex): | |
| """Helper function for checking arguments common to all solvers.""" | |
| y0 = np.asarray(y0) | |
| if np.issubdtype(y0.dtype, np.complexfloating): | |
| if not support_complex: | |
| raise ValueError("`y0` is complex, but the chosen solver does " | |
| "not support integration in a complex domain.") | |
| dtype = complex | |
| else: | |
| dtype = float | |
| y0 = y0.astype(dtype, copy=False) | |
| if y0.ndim != 1: | |
| raise ValueError("`y0` must be 1-dimensional.") | |
| if not np.isfinite(y0).all(): | |
| raise ValueError("All components of the initial state `y0` must be finite.") | |
| def fun_wrapped(t, y): | |
| return np.asarray(fun(t, y), dtype=dtype) | |
| return fun_wrapped, y0 | |
| class OdeSolver: | |
| """Base class for ODE solvers. | |
| In order to implement a new solver you need to follow the guidelines: | |
| 1. A constructor must accept parameters presented in the base class | |
| (listed below) along with any other parameters specific to a solver. | |
| 2. A constructor must accept arbitrary extraneous arguments | |
| ``**extraneous``, but warn that these arguments are irrelevant | |
| using `common.warn_extraneous` function. Do not pass these | |
| arguments to the base class. | |
| 3. A solver must implement a private method `_step_impl(self)` which | |
| propagates a solver one step further. It must return tuple | |
| ``(success, message)``, where ``success`` is a boolean indicating | |
| whether a step was successful, and ``message`` is a string | |
| containing description of a failure if a step failed or None | |
| otherwise. | |
| 4. A solver must implement a private method `_dense_output_impl(self)`, | |
| which returns a `DenseOutput` object covering the last successful | |
| step. | |
| 5. A solver must have attributes listed below in Attributes section. | |
| Note that ``t_old`` and ``step_size`` are updated automatically. | |
| 6. Use `fun(self, t, y)` method for the system rhs evaluation, this | |
| way the number of function evaluations (`nfev`) will be tracked | |
| automatically. | |
| 7. For convenience, a base class provides `fun_single(self, t, y)` and | |
| `fun_vectorized(self, t, y)` for evaluating the rhs in | |
| non-vectorized and vectorized fashions respectively (regardless of | |
| how `fun` from the constructor is implemented). These calls don't | |
| increment `nfev`. | |
| 8. If a solver uses a Jacobian matrix and LU decompositions, it should | |
| track the number of Jacobian evaluations (`njev`) and the number of | |
| LU decompositions (`nlu`). | |
| 9. By convention, the function evaluations used to compute a finite | |
| difference approximation of the Jacobian should not be counted in | |
| `nfev`, thus use `fun_single(self, t, y)` or | |
| `fun_vectorized(self, t, y)` when computing a finite difference | |
| approximation of the Jacobian. | |
| Parameters | |
| ---------- | |
| fun : callable | |
| Right-hand side of the system: the time derivative of the state ``y`` | |
| at time ``t``. The calling signature is ``fun(t, y)``, where ``t`` is a | |
| scalar and ``y`` is an ndarray with ``len(y) = len(y0)``. ``fun`` must | |
| return an array of the same shape as ``y``. See `vectorized` for more | |
| information. | |
| t0 : float | |
| Initial time. | |
| y0 : array_like, shape (n,) | |
| Initial state. | |
| t_bound : float | |
| Boundary time --- the integration won't continue beyond it. It also | |
| determines the direction of the integration. | |
| vectorized : bool | |
| Whether `fun` can be called in a vectorized fashion. Default is False. | |
| If ``vectorized`` is False, `fun` will always be called with ``y`` of | |
| shape ``(n,)``, where ``n = len(y0)``. | |
| If ``vectorized`` is True, `fun` may be called with ``y`` of shape | |
| ``(n, k)``, where ``k`` is an integer. In this case, `fun` must behave | |
| such that ``fun(t, y)[:, i] == fun(t, y[:, i])`` (i.e. each column of | |
| the returned array is the time derivative of the state corresponding | |
| with a column of ``y``). | |
| Setting ``vectorized=True`` allows for faster finite difference | |
| approximation of the Jacobian by methods 'Radau' and 'BDF', but | |
| will result in slower execution for other methods. It can also | |
| result in slower overall execution for 'Radau' and 'BDF' in some | |
| circumstances (e.g. small ``len(y0)``). | |
| support_complex : bool, optional | |
| Whether integration in a complex domain should be supported. | |
| Generally determined by a derived solver class capabilities. | |
| Default is False. | |
| Attributes | |
| ---------- | |
| n : int | |
| Number of equations. | |
| status : string | |
| Current status of the solver: 'running', 'finished' or 'failed'. | |
| t_bound : float | |
| Boundary time. | |
| direction : float | |
| Integration direction: +1 or -1. | |
| t : float | |
| Current time. | |
| y : ndarray | |
| Current state. | |
| t_old : float | |
| Previous time. None if no steps were made yet. | |
| step_size : float | |
| Size of the last successful step. None if no steps were made yet. | |
| nfev : int | |
| Number of the system's rhs evaluations. | |
| njev : int | |
| Number of the Jacobian evaluations. | |
| nlu : int | |
| Number of LU decompositions. | |
| """ | |
| TOO_SMALL_STEP = "Required step size is less than spacing between numbers." | |
| def __init__(self, fun, t0, y0, t_bound, vectorized, | |
| support_complex=False): | |
| self.t_old = None | |
| self.t = t0 | |
| self._fun, self.y = check_arguments(fun, y0, support_complex) | |
| self.t_bound = t_bound | |
| self.vectorized = vectorized | |
| if vectorized: | |
| def fun_single(t, y): | |
| return self._fun(t, y[:, None]).ravel() | |
| fun_vectorized = self._fun | |
| else: | |
| fun_single = self._fun | |
| def fun_vectorized(t, y): | |
| f = np.empty_like(y) | |
| for i, yi in enumerate(y.T): | |
| f[:, i] = self._fun(t, yi) | |
| return f | |
| def fun(t, y): | |
| self.nfev += 1 | |
| return self.fun_single(t, y) | |
| self.fun = fun | |
| self.fun_single = fun_single | |
| self.fun_vectorized = fun_vectorized | |
| self.direction = np.sign(t_bound - t0) if t_bound != t0 else 1 | |
| self.n = self.y.size | |
| self.status = 'running' | |
| self.nfev = 0 | |
| self.njev = 0 | |
| self.nlu = 0 | |
| def step_size(self): | |
| if self.t_old is None: | |
| return None | |
| else: | |
| return np.abs(self.t - self.t_old) | |
| def step(self): | |
| """Perform one integration step. | |
| Returns | |
| ------- | |
| message : string or None | |
| Report from the solver. Typically a reason for a failure if | |
| `self.status` is 'failed' after the step was taken or None | |
| otherwise. | |
| """ | |
| if self.status != 'running': | |
| raise RuntimeError("Attempt to step on a failed or finished " | |
| "solver.") | |
| if self.n == 0 or self.t == self.t_bound: | |
| # Handle corner cases of empty solver or no integration. | |
| self.t_old = self.t | |
| self.t = self.t_bound | |
| message = None | |
| self.status = 'finished' | |
| else: | |
| t = self.t | |
| success, message = self._step_impl() | |
| if not success: | |
| self.status = 'failed' | |
| else: | |
| self.t_old = t | |
| if self.direction * (self.t - self.t_bound) >= 0: | |
| self.status = 'finished' | |
| return message | |
| def dense_output(self): | |
| """Compute a local interpolant over the last successful step. | |
| Returns | |
| ------- | |
| sol : `DenseOutput` | |
| Local interpolant over the last successful step. | |
| """ | |
| if self.t_old is None: | |
| raise RuntimeError("Dense output is available after a successful " | |
| "step was made.") | |
| if self.n == 0 or self.t == self.t_old: | |
| # Handle corner cases of empty solver and no integration. | |
| return ConstantDenseOutput(self.t_old, self.t, self.y) | |
| else: | |
| return self._dense_output_impl() | |
| def _step_impl(self): | |
| raise NotImplementedError | |
| def _dense_output_impl(self): | |
| raise NotImplementedError | |
| class DenseOutput: | |
| """Base class for local interpolant over step made by an ODE solver. | |
| It interpolates between `t_min` and `t_max` (see Attributes below). | |
| Evaluation outside this interval is not forbidden, but the accuracy is not | |
| guaranteed. | |
| Attributes | |
| ---------- | |
| t_min, t_max : float | |
| Time range of the interpolation. | |
| """ | |
| def __init__(self, t_old, t): | |
| self.t_old = t_old | |
| self.t = t | |
| self.t_min = min(t, t_old) | |
| self.t_max = max(t, t_old) | |
| def __call__(self, t): | |
| """Evaluate the interpolant. | |
| Parameters | |
| ---------- | |
| t : float or array_like with shape (n_points,) | |
| Points to evaluate the solution at. | |
| Returns | |
| ------- | |
| y : ndarray, shape (n,) or (n, n_points) | |
| Computed values. Shape depends on whether `t` was a scalar or a | |
| 1-D array. | |
| """ | |
| t = np.asarray(t) | |
| if t.ndim > 1: | |
| raise ValueError("`t` must be a float or a 1-D array.") | |
| return self._call_impl(t) | |
| def _call_impl(self, t): | |
| raise NotImplementedError | |
| class ConstantDenseOutput(DenseOutput): | |
| """Constant value interpolator. | |
| This class used for degenerate integration cases: equal integration limits | |
| or a system with 0 equations. | |
| """ | |
| def __init__(self, t_old, t, value): | |
| super().__init__(t_old, t) | |
| self.value = value | |
| def _call_impl(self, t): | |
| if t.ndim == 0: | |
| return self.value | |
| else: | |
| ret = np.empty((self.value.shape[0], t.shape[0])) | |
| ret[:] = self.value[:, None] | |
| return ret | |