peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/scipy
/special
/_spfun_stats.py
# Last Change: Sat Mar 21 02:00 PM 2009 J | |
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"""Some more special functions which may be useful for multivariate statistical | |
analysis.""" | |
import numpy as np | |
from scipy.special import gammaln as loggam | |
__all__ = ['multigammaln'] | |
def multigammaln(a, d): | |
r"""Returns the log of multivariate gamma, also sometimes called the | |
generalized gamma. | |
Parameters | |
---------- | |
a : ndarray | |
The multivariate gamma is computed for each item of `a`. | |
d : int | |
The dimension of the space of integration. | |
Returns | |
------- | |
res : ndarray | |
The values of the log multivariate gamma at the given points `a`. | |
Notes | |
----- | |
The formal definition of the multivariate gamma of dimension d for a real | |
`a` is | |
.. math:: | |
\Gamma_d(a) = \int_{A>0} e^{-tr(A)} |A|^{a - (d+1)/2} dA | |
with the condition :math:`a > (d-1)/2`, and :math:`A > 0` being the set of | |
all the positive definite matrices of dimension `d`. Note that `a` is a | |
scalar: the integrand only is multivariate, the argument is not (the | |
function is defined over a subset of the real set). | |
This can be proven to be equal to the much friendlier equation | |
.. math:: | |
\Gamma_d(a) = \pi^{d(d-1)/4} \prod_{i=1}^{d} \Gamma(a - (i-1)/2). | |
References | |
---------- | |
R. J. Muirhead, Aspects of multivariate statistical theory (Wiley Series in | |
probability and mathematical statistics). | |
Examples | |
-------- | |
>>> import numpy as np | |
>>> from scipy.special import multigammaln, gammaln | |
>>> a = 23.5 | |
>>> d = 10 | |
>>> multigammaln(a, d) | |
454.1488605074416 | |
Verify that the result agrees with the logarithm of the equation | |
shown above: | |
>>> d*(d-1)/4*np.log(np.pi) + gammaln(a - 0.5*np.arange(0, d)).sum() | |
454.1488605074416 | |
""" | |
a = np.asarray(a) | |
if not np.isscalar(d) or (np.floor(d) != d): | |
raise ValueError("d should be a positive integer (dimension)") | |
if np.any(a <= 0.5 * (d - 1)): | |
raise ValueError(f"condition a ({a:f}) > 0.5 * (d-1) ({0.5 * (d-1):f}) not met") | |
res = (d * (d-1) * 0.25) * np.log(np.pi) | |
res += np.sum(loggam([(a - (j - 1.)/2) for j in range(1, d+1)]), axis=0) | |
return res | |