peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/scipy
/_lib
/_testutils.py
""" | |
Generic test utilities. | |
""" | |
import os | |
import re | |
import sys | |
import numpy as np | |
import inspect | |
import sysconfig | |
__all__ = ['PytestTester', 'check_free_memory', '_TestPythranFunc', 'IS_MUSL'] | |
IS_MUSL = False | |
# alternate way is | |
# from packaging.tags import sys_tags | |
# _tags = list(sys_tags()) | |
# if 'musllinux' in _tags[0].platform: | |
_v = sysconfig.get_config_var('HOST_GNU_TYPE') or '' | |
if 'musl' in _v: | |
IS_MUSL = True | |
class FPUModeChangeWarning(RuntimeWarning): | |
"""Warning about FPU mode change""" | |
pass | |
class PytestTester: | |
""" | |
Run tests for this namespace | |
``scipy.test()`` runs tests for all of SciPy, with the default settings. | |
When used from a submodule (e.g., ``scipy.cluster.test()``, only the tests | |
for that namespace are run. | |
Parameters | |
---------- | |
label : {'fast', 'full'}, optional | |
Whether to run only the fast tests, or also those marked as slow. | |
Default is 'fast'. | |
verbose : int, optional | |
Test output verbosity. Default is 1. | |
extra_argv : list, optional | |
Arguments to pass through to Pytest. | |
doctests : bool, optional | |
Whether to run doctests or not. Default is False. | |
coverage : bool, optional | |
Whether to run tests with code coverage measurements enabled. | |
Default is False. | |
tests : list of str, optional | |
List of module names to run tests for. By default, uses the module | |
from which the ``test`` function is called. | |
parallel : int, optional | |
Run tests in parallel with pytest-xdist, if number given is larger than | |
1. Default is 1. | |
""" | |
def __init__(self, module_name): | |
self.module_name = module_name | |
def __call__(self, label="fast", verbose=1, extra_argv=None, doctests=False, | |
coverage=False, tests=None, parallel=None): | |
import pytest | |
module = sys.modules[self.module_name] | |
module_path = os.path.abspath(module.__path__[0]) | |
pytest_args = ['--showlocals', '--tb=short'] | |
if doctests: | |
raise ValueError("Doctests not supported") | |
if extra_argv: | |
pytest_args += list(extra_argv) | |
if verbose and int(verbose) > 1: | |
pytest_args += ["-" + "v"*(int(verbose)-1)] | |
if coverage: | |
pytest_args += ["--cov=" + module_path] | |
if label == "fast": | |
pytest_args += ["-m", "not slow"] | |
elif label != "full": | |
pytest_args += ["-m", label] | |
if tests is None: | |
tests = [self.module_name] | |
if parallel is not None and parallel > 1: | |
if _pytest_has_xdist(): | |
pytest_args += ['-n', str(parallel)] | |
else: | |
import warnings | |
warnings.warn('Could not run tests in parallel because ' | |
'pytest-xdist plugin is not available.', | |
stacklevel=2) | |
pytest_args += ['--pyargs'] + list(tests) | |
try: | |
code = pytest.main(pytest_args) | |
except SystemExit as exc: | |
code = exc.code | |
return (code == 0) | |
class _TestPythranFunc: | |
''' | |
These are situations that can be tested in our pythran tests: | |
- A function with multiple array arguments and then | |
other positional and keyword arguments. | |
- A function with array-like keywords (e.g. `def somefunc(x0, x1=None)`. | |
Note: list/tuple input is not yet tested! | |
`self.arguments`: A dictionary which key is the index of the argument, | |
value is tuple(array value, all supported dtypes) | |
`self.partialfunc`: A function used to freeze some non-array argument | |
that of no interests in the original function | |
''' | |
ALL_INTEGER = [np.int8, np.int16, np.int32, np.int64, np.intc, np.intp] | |
ALL_FLOAT = [np.float32, np.float64] | |
ALL_COMPLEX = [np.complex64, np.complex128] | |
def setup_method(self): | |
self.arguments = {} | |
self.partialfunc = None | |
self.expected = None | |
def get_optional_args(self, func): | |
# get optional arguments with its default value, | |
# used for testing keywords | |
signature = inspect.signature(func) | |
optional_args = {} | |
for k, v in signature.parameters.items(): | |
if v.default is not inspect.Parameter.empty: | |
optional_args[k] = v.default | |
return optional_args | |
def get_max_dtype_list_length(self): | |
# get the max supported dtypes list length in all arguments | |
max_len = 0 | |
for arg_idx in self.arguments: | |
cur_len = len(self.arguments[arg_idx][1]) | |
if cur_len > max_len: | |
max_len = cur_len | |
return max_len | |
def get_dtype(self, dtype_list, dtype_idx): | |
# get the dtype from dtype_list via index | |
# if the index is out of range, then return the last dtype | |
if dtype_idx > len(dtype_list)-1: | |
return dtype_list[-1] | |
else: | |
return dtype_list[dtype_idx] | |
def test_all_dtypes(self): | |
for type_idx in range(self.get_max_dtype_list_length()): | |
args_array = [] | |
for arg_idx in self.arguments: | |
new_dtype = self.get_dtype(self.arguments[arg_idx][1], | |
type_idx) | |
args_array.append(self.arguments[arg_idx][0].astype(new_dtype)) | |
self.pythranfunc(*args_array) | |
def test_views(self): | |
args_array = [] | |
for arg_idx in self.arguments: | |
args_array.append(self.arguments[arg_idx][0][::-1][::-1]) | |
self.pythranfunc(*args_array) | |
def test_strided(self): | |
args_array = [] | |
for arg_idx in self.arguments: | |
args_array.append(np.repeat(self.arguments[arg_idx][0], | |
2, axis=0)[::2]) | |
self.pythranfunc(*args_array) | |
def _pytest_has_xdist(): | |
""" | |
Check if the pytest-xdist plugin is installed, providing parallel tests | |
""" | |
# Check xdist exists without importing, otherwise pytests emits warnings | |
from importlib.util import find_spec | |
return find_spec('xdist') is not None | |
def check_free_memory(free_mb): | |
""" | |
Check *free_mb* of memory is available, otherwise do pytest.skip | |
""" | |
import pytest | |
try: | |
mem_free = _parse_size(os.environ['SCIPY_AVAILABLE_MEM']) | |
msg = '{} MB memory required, but environment SCIPY_AVAILABLE_MEM={}'.format( | |
free_mb, os.environ['SCIPY_AVAILABLE_MEM']) | |
except KeyError: | |
mem_free = _get_mem_available() | |
if mem_free is None: | |
pytest.skip("Could not determine available memory; set SCIPY_AVAILABLE_MEM " | |
"variable to free memory in MB to run the test.") | |
msg = f'{free_mb} MB memory required, but {mem_free/1e6} MB available' | |
if mem_free < free_mb * 1e6: | |
pytest.skip(msg) | |
def _parse_size(size_str): | |
suffixes = {'': 1e6, | |
'b': 1.0, | |
'k': 1e3, 'M': 1e6, 'G': 1e9, 'T': 1e12, | |
'kb': 1e3, 'Mb': 1e6, 'Gb': 1e9, 'Tb': 1e12, | |
'kib': 1024.0, 'Mib': 1024.0**2, 'Gib': 1024.0**3, 'Tib': 1024.0**4} | |
m = re.match(r'^\s*(\d+)\s*({})\s*$'.format('|'.join(suffixes.keys())), | |
size_str, | |
re.I) | |
if not m or m.group(2) not in suffixes: | |
raise ValueError("Invalid size string") | |
return float(m.group(1)) * suffixes[m.group(2)] | |
def _get_mem_available(): | |
""" | |
Get information about memory available, not counting swap. | |
""" | |
try: | |
import psutil | |
return psutil.virtual_memory().available | |
except (ImportError, AttributeError): | |
pass | |
if sys.platform.startswith('linux'): | |
info = {} | |
with open('/proc/meminfo') as f: | |
for line in f: | |
p = line.split() | |
info[p[0].strip(':').lower()] = float(p[1]) * 1e3 | |
if 'memavailable' in info: | |
# Linux >= 3.14 | |
return info['memavailable'] | |
else: | |
return info['memfree'] + info['cached'] | |
return None | |