peacock-data-public-datasets-idc-cronscript
/
venv
/lib
/python3.10
/site-packages
/pyarrow
/_substrait.pyx
# Licensed to the Apache Software Foundation (ASF) under one | |
# or more contributor license agreements. See the NOTICE file | |
# distributed with this work for additional information | |
# regarding copyright ownership. The ASF licenses this file | |
# to you under the Apache License, Version 2.0 (the | |
# "License"); you may not use this file except in compliance | |
# with the License. You may obtain a copy of the License at | |
# | |
# http://www.apache.org/licenses/LICENSE-2.0 | |
# | |
# Unless required by applicable law or agreed to in writing, | |
# software distributed under the License is distributed on an | |
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | |
# KIND, either express or implied. See the License for the | |
# specific language governing permissions and limitations | |
# under the License. | |
# cython: language_level = 3 | |
from cython.operator cimport dereference as deref | |
from libcpp.vector cimport vector as std_vector | |
from pyarrow import Buffer, py_buffer | |
from pyarrow._compute cimport Expression | |
from pyarrow.lib import frombytes, tobytes | |
from pyarrow.lib cimport * | |
from pyarrow.includes.libarrow cimport * | |
from pyarrow.includes.libarrow_substrait cimport * | |
# TODO GH-37235: Fix exception handling | |
cdef CDeclaration _create_named_table_provider( | |
dict named_args, const std_vector[c_string]& names, const CSchema& schema | |
) noexcept: | |
cdef: | |
c_string c_name | |
shared_ptr[CTable] c_in_table | |
shared_ptr[CTableSourceNodeOptions] c_tablesourceopts | |
shared_ptr[CExecNodeOptions] c_input_node_opts | |
vector[CDeclaration.Input] no_c_inputs | |
py_names = [] | |
for i in range(names.size()): | |
c_name = names[i] | |
py_names.append(frombytes(c_name)) | |
py_schema = pyarrow_wrap_schema(make_shared[CSchema](schema)) | |
py_table = named_args["provider"](py_names, py_schema) | |
c_in_table = pyarrow_unwrap_table(py_table) | |
c_tablesourceopts = make_shared[CTableSourceNodeOptions](c_in_table) | |
c_input_node_opts = static_pointer_cast[CExecNodeOptions, CTableSourceNodeOptions]( | |
c_tablesourceopts) | |
return CDeclaration(tobytes("table_source"), | |
no_c_inputs, c_input_node_opts) | |
def run_query(plan, *, table_provider=None, use_threads=True): | |
""" | |
Execute a Substrait plan and read the results as a RecordBatchReader. | |
Parameters | |
---------- | |
plan : Union[Buffer, bytes] | |
The serialized Substrait plan to execute. | |
table_provider : object (optional) | |
A function to resolve any NamedTable relation to a table. | |
The function will receive two arguments which will be a list | |
of strings representing the table name and a pyarrow.Schema representing | |
the expected schema and should return a pyarrow.Table. | |
use_threads : bool, default True | |
If True then multiple threads will be used to run the query. If False then | |
all CPU intensive work will be done on the calling thread. | |
Returns | |
------- | |
RecordBatchReader | |
A reader containing the result of the executed query | |
Examples | |
-------- | |
>>> import pyarrow as pa | |
>>> from pyarrow.lib import tobytes | |
>>> import pyarrow.substrait as substrait | |
>>> test_table_1 = pa.Table.from_pydict({"x": [1, 2, 3]}) | |
>>> test_table_2 = pa.Table.from_pydict({"x": [4, 5, 6]}) | |
>>> def table_provider(names, schema): | |
... if not names: | |
... raise Exception("No names provided") | |
... elif names[0] == "t1": | |
... return test_table_1 | |
... elif names[1] == "t2": | |
... return test_table_2 | |
... else: | |
... raise Exception("Unrecognized table name") | |
... | |
>>> substrait_query = ''' | |
... { | |
... "relations": [ | |
... {"rel": { | |
... "read": { | |
... "base_schema": { | |
... "struct": { | |
... "types": [ | |
... {"i64": {}} | |
... ] | |
... }, | |
... "names": [ | |
... "x" | |
... ] | |
... }, | |
... "namedTable": { | |
... "names": ["t1"] | |
... } | |
... } | |
... }} | |
... ] | |
... } | |
... ''' | |
>>> buf = pa._substrait._parse_json_plan(tobytes(substrait_query)) | |
>>> reader = pa.substrait.run_query(buf, table_provider=table_provider) | |
>>> reader.read_all() | |
pyarrow.Table | |
x: int64 | |
---- | |
x: [[1,2,3]] | |
""" | |
cdef: | |
CResult[shared_ptr[CRecordBatchReader]] c_res_reader | |
shared_ptr[CRecordBatchReader] c_reader | |
RecordBatchReader reader | |
shared_ptr[CBuffer] c_buf_plan | |
CConversionOptions c_conversion_options | |
c_bool c_use_threads | |
c_use_threads = use_threads | |
if isinstance(plan, bytes): | |
c_buf_plan = pyarrow_unwrap_buffer(py_buffer(plan)) | |
elif isinstance(plan, Buffer): | |
c_buf_plan = pyarrow_unwrap_buffer(plan) | |
else: | |
raise TypeError( | |
f"Expected 'pyarrow.Buffer' or bytes, got '{type(plan)}'") | |
if table_provider is not None: | |
named_table_args = { | |
"provider": table_provider | |
} | |
c_conversion_options.named_table_provider = BindFunction[CNamedTableProvider]( | |
&_create_named_table_provider, named_table_args) | |
with nogil: | |
c_res_reader = ExecuteSerializedPlan( | |
deref(c_buf_plan), default_extension_id_registry(), | |
GetFunctionRegistry(), c_conversion_options, c_use_threads) | |
c_reader = GetResultValue(c_res_reader) | |
reader = RecordBatchReader.__new__(RecordBatchReader) | |
reader.reader = c_reader | |
return reader | |
def _parse_json_plan(plan): | |
""" | |
Parse a JSON plan into equivalent serialized Protobuf. | |
Parameters | |
---------- | |
plan : bytes | |
Substrait plan in JSON. | |
Returns | |
------- | |
Buffer | |
A buffer containing the serialized Protobuf plan. | |
""" | |
cdef: | |
CResult[shared_ptr[CBuffer]] c_res_buffer | |
c_string c_str_plan | |
shared_ptr[CBuffer] c_buf_plan | |
c_str_plan = plan | |
c_res_buffer = SerializeJsonPlan(c_str_plan) | |
with nogil: | |
c_buf_plan = GetResultValue(c_res_buffer) | |
return pyarrow_wrap_buffer(c_buf_plan) | |
def serialize_expressions(exprs, names, schema, *, allow_arrow_extensions=False): | |
""" | |
Serialize a collection of expressions into Substrait | |
Substrait expressions must be bound to a schema. For example, | |
the Substrait expression ``a:i32 + b:i32`` is different from the | |
Substrait expression ``a:i64 + b:i64``. Pyarrow expressions are | |
typically unbound. For example, both of the above expressions | |
would be represented as ``a + b`` in pyarrow. | |
This means a schema must be provided when serializing an expression. | |
It also means that the serialization may fail if a matching function | |
call cannot be found for the expression. | |
Parameters | |
---------- | |
exprs : list of Expression | |
The expressions to serialize | |
names : list of str | |
Names for the expressions | |
schema : Schema | |
The schema the expressions will be bound to | |
allow_arrow_extensions : bool, default False | |
If False then only functions that are part of the core Substrait function | |
definitions will be allowed. Set this to True to allow pyarrow-specific functions | |
and user defined functions but the result may not be accepted by other | |
compute libraries. | |
Returns | |
------- | |
Buffer | |
An ExtendedExpression message containing the serialized expressions | |
""" | |
cdef: | |
CResult[shared_ptr[CBuffer]] c_res_buffer | |
shared_ptr[CBuffer] c_buffer | |
CNamedExpression c_named_expr | |
CBoundExpressions c_bound_exprs | |
CConversionOptions c_conversion_options | |
if len(exprs) != len(names): | |
raise ValueError("exprs and names need to have the same length") | |
for expr, name in zip(exprs, names): | |
if not isinstance(expr, Expression): | |
raise TypeError(f"Expected Expression, got '{type(expr)}' in exprs") | |
if not isinstance(name, str): | |
raise TypeError(f"Expected str, got '{type(name)}' in names") | |
c_named_expr.expression = (<Expression> expr).unwrap() | |
c_named_expr.name = tobytes(<str> name) | |
c_bound_exprs.named_expressions.push_back(c_named_expr) | |
c_bound_exprs.schema = (<Schema> schema).sp_schema | |
c_conversion_options.allow_arrow_extensions = allow_arrow_extensions | |
with nogil: | |
c_res_buffer = SerializeExpressions(c_bound_exprs, c_conversion_options) | |
c_buffer = GetResultValue(c_res_buffer) | |
return pyarrow_wrap_buffer(c_buffer) | |
cdef class BoundExpressions(_Weakrefable): | |
""" | |
A collection of named expressions and the schema they are bound to | |
This is equivalent to the Substrait ExtendedExpression message | |
""" | |
cdef: | |
CBoundExpressions c_bound_exprs | |
def __init__(self): | |
msg = 'BoundExpressions is an abstract class thus cannot be initialized.' | |
raise TypeError(msg) | |
cdef void init(self, CBoundExpressions bound_expressions): | |
self.c_bound_exprs = bound_expressions | |
@property | |
def schema(self): | |
""" | |
The common schema that all expressions are bound to | |
""" | |
return pyarrow_wrap_schema(self.c_bound_exprs.schema) | |
@property | |
def expressions(self): | |
""" | |
A dict from expression name to expression | |
""" | |
expr_dict = {} | |
for named_expr in self.c_bound_exprs.named_expressions: | |
name = frombytes(named_expr.name) | |
expr = Expression.wrap(named_expr.expression) | |
expr_dict[name] = expr | |
return expr_dict | |
@staticmethod | |
cdef wrap(const CBoundExpressions& bound_expressions): | |
cdef BoundExpressions self = BoundExpressions.__new__(BoundExpressions) | |
self.init(bound_expressions) | |
return self | |
def deserialize_expressions(buf): | |
""" | |
Deserialize an ExtendedExpression Substrait message into a BoundExpressions object | |
Parameters | |
---------- | |
buf : Buffer or bytes | |
The message to deserialize | |
Returns | |
------- | |
BoundExpressions | |
The deserialized expressions, their names, and the bound schema | |
""" | |
cdef: | |
shared_ptr[CBuffer] c_buffer | |
CResult[CBoundExpressions] c_res_bound_exprs | |
CBoundExpressions c_bound_exprs | |
if isinstance(buf, bytes): | |
c_buffer = pyarrow_unwrap_buffer(py_buffer(buf)) | |
elif isinstance(buf, Buffer): | |
c_buffer = pyarrow_unwrap_buffer(buf) | |
else: | |
raise TypeError( | |
f"Expected 'pyarrow.Buffer' or bytes, got '{type(buf)}'") | |
with nogil: | |
c_res_bound_exprs = DeserializeExpressions(deref(c_buffer)) | |
c_bound_exprs = GetResultValue(c_res_bound_exprs) | |
return BoundExpressions.wrap(c_bound_exprs) | |
def get_supported_functions(): | |
""" | |
Get a list of Substrait functions that the underlying | |
engine currently supports. | |
Returns | |
------- | |
list[str] | |
A list of function ids encoded as '{uri}#{name}' | |
""" | |
cdef: | |
ExtensionIdRegistry* c_id_registry | |
std_vector[c_string] c_ids | |
c_id_registry = default_extension_id_registry() | |
c_ids = c_id_registry.GetSupportedSubstraitFunctions() | |
functions_list = [] | |
for c_id in c_ids: | |
functions_list.append(frombytes(c_id)) | |
return functions_list | |