Add files using upload-large-folder tool

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_lsq/bvls.py

@@ -0,0 +1,183 @@
+"""Bounded-variable least-squares algorithm."""
+import numpy as np
+from numpy.linalg import norm, lstsq
+from scipy.optimize import OptimizeResult
+
+from .common import print_header_linear, print_iteration_linear
+
+
+def compute_kkt_optimality(g, on_bound):
+    """Compute the maximum violation of KKT conditions."""
+    g_kkt = g * on_bound
+    free_set = on_bound == 0
+    g_kkt[free_set] = np.abs(g[free_set])
+    return np.max(g_kkt)
+
+
+def bvls(A, b, x_lsq, lb, ub, tol, max_iter, verbose, rcond=None):
+    m, n = A.shape
+
+    x = x_lsq.copy()
+    on_bound = np.zeros(n)
+
+    mask = x <= lb
+    x[mask] = lb[mask]
+    on_bound[mask] = -1
+
+    mask = x >= ub
+    x[mask] = ub[mask]
+    on_bound[mask] = 1
+
+    free_set = on_bound == 0
+    active_set = ~free_set
+    free_set, = np.nonzero(free_set)
+
+    r = A.dot(x) - b
+    cost = 0.5 * np.dot(r, r)
+    initial_cost = cost
+    g = A.T.dot(r)
+
+    cost_change = None
+    step_norm = None
+    iteration = 0
+
+    if verbose == 2:
+        print_header_linear()
+
+    # This is the initialization loop. The requirement is that the
+    # least-squares solution on free variables is feasible before BVLS starts.
+    # One possible initialization is to set all variables to lower or upper
+    # bounds, but many iterations may be required from this state later on.
+    # The implemented ad-hoc procedure which intuitively should give a better
+    # initial state: find the least-squares solution on current free variables,
+    # if its feasible then stop, otherwise, set violating variables to
+    # corresponding bounds and continue on the reduced set of free variables.
+
+    while free_set.size > 0:
+        if verbose == 2:
+            optimality = compute_kkt_optimality(g, on_bound)
+            print_iteration_linear(iteration, cost, cost_change, step_norm,
+                                   optimality)
+
+        iteration += 1
+        x_free_old = x[free_set].copy()
+
+        A_free = A[:, free_set]
+        b_free = b - A.dot(x * active_set)
+        z = lstsq(A_free, b_free, rcond=rcond)[0]
+
+        lbv = z < lb[free_set]
+        ubv = z > ub[free_set]
+        v = lbv | ubv
+
+        if np.any(lbv):
+            ind = free_set[lbv]
+            x[ind] = lb[ind]
+            active_set[ind] = True
+            on_bound[ind] = -1
+
+        if np.any(ubv):
+            ind = free_set[ubv]
+            x[ind] = ub[ind]
+            active_set[ind] = True
+            on_bound[ind] = 1
+
+        ind = free_set[~v]
+        x[ind] = z[~v]
+
+        r = A.dot(x) - b
+        cost_new = 0.5 * np.dot(r, r)
+        cost_change = cost - cost_new
+        cost = cost_new
+        g = A.T.dot(r)
+        step_norm = norm(x[free_set] - x_free_old)
+
+        if np.any(v):
+            free_set = free_set[~v]
+        else:
+            break
+
+    if max_iter is None:
+        max_iter = n
+    max_iter += iteration
+
+    termination_status = None
+
+    # Main BVLS loop.
+
+    optimality = compute_kkt_optimality(g, on_bound)
+    for iteration in range(iteration, max_iter):  # BVLS Loop A
+        if verbose == 2:
+            print_iteration_linear(iteration, cost, cost_change,
+                                   step_norm, optimality)
+
+        if optimality < tol:
+            termination_status = 1
+
+        if termination_status is not None:
+            break
+
+        move_to_free = np.argmax(g * on_bound)
+        on_bound[move_to_free] = 0
+        
+        while True:   # BVLS Loop B
+
+            free_set = on_bound == 0
+            active_set = ~free_set
+            free_set, = np.nonzero(free_set)
+    
+            x_free = x[free_set]
+            x_free_old = x_free.copy()
+            lb_free = lb[free_set]
+            ub_free = ub[free_set]
+
+            A_free = A[:, free_set]
+            b_free = b - A.dot(x * active_set)
+            z = lstsq(A_free, b_free, rcond=rcond)[0]
+
+            lbv, = np.nonzero(z < lb_free)
+            ubv, = np.nonzero(z > ub_free)
+            v = np.hstack((lbv, ubv))
+
+            if v.size > 0:
+                alphas = np.hstack((
+                    lb_free[lbv] - x_free[lbv],
+                    ub_free[ubv] - x_free[ubv])) / (z[v] - x_free[v])
+
+                i = np.argmin(alphas)
+                i_free = v[i]
+                alpha = alphas[i]
+
+                x_free *= 1 - alpha
+                x_free += alpha * z
+                x[free_set] = x_free
+
+                if i < lbv.size:
+                    on_bound[free_set[i_free]] = -1
+                else:
+                    on_bound[free_set[i_free]] = 1
+            else:
+                x_free = z
+                x[free_set] = x_free
+                break
+
+        step_norm = norm(x_free - x_free_old)
+
+        r = A.dot(x) - b
+        cost_new = 0.5 * np.dot(r, r)
+        cost_change = cost - cost_new
+
+        if cost_change < tol * cost:
+            termination_status = 2
+        cost = cost_new
+
+        g = A.T.dot(r)
+        optimality = compute_kkt_optimality(g, on_bound)
+
+    if termination_status is None:
+        termination_status = 0
+
+    return OptimizeResult(
+        x=x, fun=r, cost=cost, optimality=optimality, active_mask=on_bound,
+        nit=iteration + 1, status=termination_status,
+        initial_cost=initial_cost)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_shgo_lib/_complex.py

@@ -0,0 +1,1225 @@
+"""Base classes for low memory simplicial complex structures."""
+import copy
+import logging
+import itertools
+import decimal
+from functools import cache
+
+import numpy
+
+from ._vertex import (VertexCacheField, VertexCacheIndex)
+
+
+class Complex:
+    """
+    Base class for a simplicial complex described as a cache of vertices
+    together with their connections.
+
+    Important methods:
+        Domain triangulation:
+                Complex.triangulate, Complex.split_generation
+        Triangulating arbitrary points (must be traingulable,
+            may exist outside domain):
+                Complex.triangulate(sample_set)
+        Converting another simplicial complex structure data type to the
+            structure used in Complex (ex. OBJ wavefront)
+                Complex.convert(datatype, data)
+
+    Important objects:
+        HC.V: The cache of vertices and their connection
+        HC.H: Storage structure of all vertex groups
+
+    Parameters
+    ----------
+    dim : int
+        Spatial dimensionality of the complex R^dim
+    domain : list of tuples, optional
+        The bounds [x_l, x_u]^dim of the hyperrectangle space
+        ex. The default domain is the hyperrectangle [0, 1]^dim
+        Note: The domain must be convex, non-convex spaces can be cut
+              away from this domain using the non-linear
+              g_cons functions to define any arbitrary domain
+              (these domains may also be disconnected from each other)
+    sfield :
+        A scalar function defined in the associated domain f: R^dim --> R
+    sfield_args : tuple
+        Additional arguments to be passed to `sfield`
+    vfield :
+        A scalar function defined in the associated domain
+                       f: R^dim --> R^m
+                   (for example a gradient function of the scalar field)
+    vfield_args : tuple
+        Additional arguments to be passed to vfield
+    symmetry : None or list
+            Specify if the objective function contains symmetric variables.
+            The search space (and therefore performance) is decreased by up to
+            O(n!) times in the fully symmetric case.
+
+            E.g.  f(x) = (x_1 + x_2 + x_3) + (x_4)**2 + (x_5)**2 + (x_6)**2
+
+            In this equation x_2 and x_3 are symmetric to x_1, while x_5 and
+             x_6 are symmetric to x_4, this can be specified to the solver as:
+
+            symmetry = [0,  # Variable 1
+                        0,  # symmetric to variable 1
+                        0,  # symmetric to variable 1
+                        3,  # Variable 4
+                        3,  # symmetric to variable 4
+                        3,  # symmetric to variable 4
+                        ]
+
+    constraints : dict or sequence of dict, optional
+        Constraints definition.
+        Function(s) ``R**n`` in the form::
+
+            g(x) <= 0 applied as g : R^n -> R^m
+            h(x) == 0 applied as h : R^n -> R^p
+
+        Each constraint is defined in a dictionary with fields:
+
+            type : str
+                Constraint type: 'eq' for equality, 'ineq' for inequality.
+            fun : callable
+                The function defining the constraint.
+            jac : callable, optional
+                The Jacobian of `fun` (only for SLSQP).
+            args : sequence, optional
+                Extra arguments to be passed to the function and Jacobian.
+
+        Equality constraint means that the constraint function result is to
+        be zero whereas inequality means that it is to be
+        non-negative.constraints : dict or sequence of dict, optional
+        Constraints definition.
+        Function(s) ``R**n`` in the form::
+
+            g(x) <= 0 applied as g : R^n -> R^m
+            h(x) == 0 applied as h : R^n -> R^p
+
+        Each constraint is defined in a dictionary with fields:
+
+            type : str
+                Constraint type: 'eq' for equality, 'ineq' for inequality.
+            fun : callable
+                The function defining the constraint.
+            jac : callable, optional
+                The Jacobian of `fun` (unused).
+            args : sequence, optional
+                Extra arguments to be passed to the function and Jacobian.
+
+        Equality constraint means that the constraint function result is to
+        be zero whereas inequality means that it is to be non-negative.
+
+    workers : int  optional
+        Uses `multiprocessing.Pool <multiprocessing>`) to compute the field
+         functions in parallel.
+    """
+    def __init__(self, dim, domain=None, sfield=None, sfield_args=(),
+                 symmetry=None, constraints=None, workers=1):
+        self.dim = dim
+
+        # Domains
+        self.domain = domain
+        if domain is None:
+            self.bounds = [(0.0, 1.0), ] * dim
+        else:
+            self.bounds = domain
+        self.symmetry = symmetry
+        #      here in init to avoid if checks
+
+        # Field functions
+        self.sfield = sfield
+        self.sfield_args = sfield_args
+
+        # Process constraints
+        # Constraints
+        # Process constraint dict sequence:
+        if constraints is not None:
+            self.min_cons = constraints
+            self.g_cons = []
+            self.g_args = []
+            if not isinstance(constraints, (tuple, list)):
+                constraints = (constraints,)
+
+            for cons in constraints:
+                if cons['type'] in ('ineq'):
+                    self.g_cons.append(cons['fun'])
+                    try:
+                        self.g_args.append(cons['args'])
+                    except KeyError:
+                        self.g_args.append(())
+            self.g_cons = tuple(self.g_cons)
+            self.g_args = tuple(self.g_args)
+        else:
+            self.g_cons = None
+            self.g_args = None
+
+        # Homology properties
+        self.gen = 0
+        self.perm_cycle = 0
+
+        # Every cell is stored in a list of its generation,
+        # ex. the initial cell is stored in self.H[0]
+        # 1st get new cells are stored in self.H[1] etc.
+        # When a cell is sub-generated it is removed from this list
+
+        self.H = []  # Storage structure of vertex groups
+
+        # Cache of all vertices
+        if (sfield is not None) or (self.g_cons is not None):
+            # Initiate a vertex cache and an associated field cache, note that
+            # the field case is always initiated inside the vertex cache if an
+            # associated field scalar field is defined:
+            if sfield is not None:
+                self.V = VertexCacheField(field=sfield, field_args=sfield_args,
+                                          g_cons=self.g_cons,
+                                          g_cons_args=self.g_args,
+                                          workers=workers)
+            elif self.g_cons is not None:
+                self.V = VertexCacheField(field=sfield, field_args=sfield_args,
+                                          g_cons=self.g_cons,
+                                          g_cons_args=self.g_args,
+                                          workers=workers)
+        else:
+            self.V = VertexCacheIndex()
+
+        self.V_non_symm = []  # List of non-symmetric vertices
+
+    def __call__(self):
+        return self.H
+
+    # %% Triangulation methods
+    def cyclic_product(self, bounds, origin, supremum, centroid=True):
+        """Generate initial triangulation using cyclic product"""
+        # Define current hyperrectangle
+        vot = tuple(origin)
+        vut = tuple(supremum)  # Hyperrectangle supremum
+        self.V[vot]
+        vo = self.V[vot]
+        yield vo.x
+        self.V[vut].connect(self.V[vot])
+        yield vut
+        # Cyclic group approach with second x_l --- x_u operation.
+
+        # These containers store the "lower" and "upper" vertices
+        # corresponding to the origin or supremum of every C2 group.
+        # It has the structure of `dim` times embedded lists each containing
+        # these vertices as the entire complex grows. Bounds[0] has to be done
+        # outside the loops before we have symmetric containers.
+        # NOTE: This means that bounds[0][1] must always exist
+        C0x = [[self.V[vot]]]
+        a_vo = copy.copy(list(origin))
+        a_vo[0] = vut[0]  # Update aN Origin
+        a_vo = self.V[tuple(a_vo)]
+        # self.V[vot].connect(self.V[tuple(a_vo)])
+        self.V[vot].connect(a_vo)
+        yield a_vo.x
+        C1x = [[a_vo]]
+        # C1x = [[self.V[tuple(a_vo)]]]
+        ab_C = []  # Container for a + b operations
+
+        # Loop over remaining bounds
+        for i, x in enumerate(bounds[1:]):
+            # Update lower and upper containers
+            C0x.append([])
+            C1x.append([])
+            # try to access a second bound (if not, C1 is symmetric)
+            try:
+                # Early try so that we don't have to copy the cache before
+                # moving on to next C1/C2: Try to add the operation of a new
+                # C2 product by accessing the upper bound
+                x[1]
+                # Copy lists for iteration
+                cC0x = [x[:] for x in C0x[:i + 1]]
+                cC1x = [x[:] for x in C1x[:i + 1]]
+                for j, (VL, VU) in enumerate(zip(cC0x, cC1x)):
+                    for k, (vl, vu) in enumerate(zip(VL, VU)):
+                        # Build aN vertices for each lower-upper pair in N:
+                        a_vl = list(vl.x)
+                        a_vu = list(vu.x)
+                        a_vl[i + 1] = vut[i + 1]
+                        a_vu[i + 1] = vut[i + 1]
+                        a_vl = self.V[tuple(a_vl)]
+
+                        # Connect vertices in N to corresponding vertices
+                        # in aN:
+                        vl.connect(a_vl)
+
+                        yield a_vl.x
+
+                        a_vu = self.V[tuple(a_vu)]
+                        # Connect vertices in N to corresponding vertices
+                        # in aN:
+                        vu.connect(a_vu)
+
+                        # Connect new vertex pair in aN:
+                        a_vl.connect(a_vu)
+
+                        # Connect lower pair to upper (triangulation
+                        # operation of a + b (two arbitrary operations):
+                        vl.connect(a_vu)
+                        ab_C.append((vl, a_vu))
+
+                        # Update the containers
+                        C0x[i + 1].append(vl)
+                        C0x[i + 1].append(vu)
+                        C1x[i + 1].append(a_vl)
+                        C1x[i + 1].append(a_vu)
+
+                        # Update old containers
+                        C0x[j].append(a_vl)
+                        C1x[j].append(a_vu)
+
+                        # Yield new points
+                        yield a_vu.x
+
+                # Try to connect aN lower source of previous a + b
+                # operation with a aN vertex
+                ab_Cc = copy.copy(ab_C)
+
+                for vp in ab_Cc:
+                    b_v = list(vp[0].x)
+                    ab_v = list(vp[1].x)
+                    b_v[i + 1] = vut[i + 1]
+                    ab_v[i + 1] = vut[i + 1]
+                    b_v = self.V[tuple(b_v)]  # b + vl
+                    ab_v = self.V[tuple(ab_v)]  # b + a_vl
+                    # Note o---o is already connected
+                    vp[0].connect(ab_v)  # o-s
+                    b_v.connect(ab_v)  # s-s
+
+                    # Add new list of cross pairs
+                    ab_C.append((vp[0], ab_v))
+                    ab_C.append((b_v, ab_v))
+
+            except IndexError:
+                cC0x = C0x[i]
+                cC1x = C1x[i]
+                VL, VU = cC0x, cC1x
+                for k, (vl, vu) in enumerate(zip(VL, VU)):
+                    # Build aN vertices for each lower-upper pair in N:
+                    a_vu = list(vu.x)
+                    a_vu[i + 1] = vut[i + 1]
+                    # Connect vertices in N to corresponding vertices
+                    # in aN:
+                    a_vu = self.V[tuple(a_vu)]
+                    # Connect vertices in N to corresponding vertices
+                    # in aN:
+                    vu.connect(a_vu)
+                    # Connect new vertex pair in aN:
+                    # a_vl.connect(a_vu)
+                    # Connect lower pair to upper (triangulation
+                    # operation of a + b (two arbitrary operations):
+                    vl.connect(a_vu)
+                    ab_C.append((vl, a_vu))
+                    C0x[i + 1].append(vu)
+                    C1x[i + 1].append(a_vu)
+                    # Yield new points
+                    a_vu.connect(self.V[vut])
+                    yield a_vu.x
+                    ab_Cc = copy.copy(ab_C)
+                    for vp in ab_Cc:
+                        if vp[1].x[i] == vut[i]:
+                            ab_v = list(vp[1].x)
+                            ab_v[i + 1] = vut[i + 1]
+                            ab_v = self.V[tuple(ab_v)]  # b + a_vl
+                            # Note o---o is already connected
+                            vp[0].connect(ab_v)  # o-s
+
+                            # Add new list of cross pairs
+                            ab_C.append((vp[0], ab_v))
+
+        # Clean class trash
+        try:
+            del C0x
+            del cC0x
+            del C1x
+            del cC1x
+            del ab_C
+            del ab_Cc
+        except UnboundLocalError:
+            pass
+
+        # Extra yield to ensure that the triangulation is completed
+        if centroid:
+            vo = self.V[vot]
+            vs = self.V[vut]
+            # Disconnect the origin and supremum
+            vo.disconnect(vs)
+            # Build centroid
+            vc = self.split_edge(vot, vut)
+            for v in vo.nn:
+                v.connect(vc)
+            yield vc.x
+            return vc.x
+        else:
+            yield vut
+            return vut
+
+    def triangulate(self, n=None, symmetry=None, centroid=True,
+                    printout=False):
+        """
+        Triangulate the initial domain, if n is not None then a limited number
+        of points will be generated
+
+        Parameters
+        ----------
+        n : int, Number of points to be sampled.
+        symmetry :
+
+            Ex. Dictionary/hashtable
+            f(x) = (x_1 + x_2 + x_3) + (x_4)**2 + (x_5)**2 + (x_6)**2
+
+            symmetry = symmetry[0]: 0,  # Variable 1
+                       symmetry[1]: 0,  # symmetric to variable 1
+                       symmetry[2]: 0,  # symmetric to variable 1
+                       symmetry[3]: 3,  # Variable 4
+                       symmetry[4]: 3,  # symmetric to variable 4
+                       symmetry[5]: 3,  # symmetric to variable 4
+                        }
+        centroid : bool, if True add a central point to the hypercube
+        printout : bool, if True print out results
+
+        NOTES:
+        ------
+        Rather than using the combinatorial algorithm to connect vertices we
+        make the following observation:
+
+        The bound pairs are similar a C2 cyclic group and the structure is
+        formed using the cartesian product:
+
+        H = C2 x C2 x C2 ... x C2 (dim times)
+
+        So construct any normal subgroup N and consider H/N first, we connect
+        all vertices within N (ex. N is C2 (the first dimension), then we move
+        to a left coset aN (an operation moving around the defined H/N group by
+        for example moving from the lower bound in C2 (dimension 2) to the
+        higher bound in C2. During this operation connection all the vertices.
+        Now repeat the N connections. Note that these elements can be connected
+        in parallel.
+        """
+        # Inherit class arguments
+        if symmetry is None:
+            symmetry = self.symmetry
+        # Build origin and supremum vectors
+        origin = [i[0] for i in self.bounds]
+        self.origin = origin
+        supremum = [i[1] for i in self.bounds]
+
+        self.supremum = supremum
+
+        if symmetry is None:
+            cbounds = self.bounds
+        else:
+            cbounds = copy.copy(self.bounds)
+            for i, j in enumerate(symmetry):
+                if i is not j:
+                    # pop second entry on second symmetry vars
+                    cbounds[i] = [self.bounds[symmetry[i]][0]]
+                    # Sole (first) entry is the sup value and there is no
+                    # origin:
+                    cbounds[i] = [self.bounds[symmetry[i]][1]]
+                    if (self.bounds[symmetry[i]] is not
+                            self.bounds[symmetry[j]]):
+                        logging.warning(f"Variable {i} was specified as "
+                                        f"symmetetric to variable {j}, however"
+                                        f", the bounds {i} ="
+                                        f" {self.bounds[symmetry[i]]} and {j}"
+                                        f" ="
+                                        f" {self.bounds[symmetry[j]]} do not "
+                                        f"match, the mismatch was ignored in "
+                                        f"the initial triangulation.")
+                        cbounds[i] = self.bounds[symmetry[j]]
+
+        if n is None:
+            # Build generator
+            self.cp = self.cyclic_product(cbounds, origin, supremum, centroid)
+            for i in self.cp:
+                i
+
+            try:
+                self.triangulated_vectors.append((tuple(self.origin),
+                                                  tuple(self.supremum)))
+            except (AttributeError, KeyError):
+                self.triangulated_vectors = [(tuple(self.origin),
+                                              tuple(self.supremum))]
+
+        else:
+            # Check if generator already exists
+            try:
+                self.cp
+            except (AttributeError, KeyError):
+                self.cp = self.cyclic_product(cbounds, origin, supremum,
+                                              centroid)
+
+            try:
+                while len(self.V.cache) < n:
+                    next(self.cp)
+            except StopIteration:
+                try:
+                    self.triangulated_vectors.append((tuple(self.origin),
+                                                      tuple(self.supremum)))
+                except (AttributeError, KeyError):
+                    self.triangulated_vectors = [(tuple(self.origin),
+                                                  tuple(self.supremum))]
+
+        if printout:
+            # for v in self.C0():
+            #   v.print_out()
+            for v in self.V.cache:
+                self.V[v].print_out()
+
+        return
+
+    def refine(self, n=1):
+        if n is None:
+            try:
+                self.triangulated_vectors
+                self.refine_all()
+                return
+            except AttributeError as ae:
+                if str(ae) == "'Complex' object has no attribute " \
+                              "'triangulated_vectors'":
+                    self.triangulate(symmetry=self.symmetry)
+                    return
+                else:
+                    raise
+
+        nt = len(self.V.cache) + n  # Target number of total vertices
+        # In the outer while loop we iterate until we have added an extra `n`
+        # vertices to the complex:
+        while len(self.V.cache) < nt:  # while loop 1
+            try:  # try 1
+                # Try to access triangulated_vectors, this should only be
+                # defined if an initial triangulation has already been
+                # performed:
+                self.triangulated_vectors
+                # Try a usual iteration of the current generator, if it
+                # does not exist or is exhausted then produce a new generator
+                try:  # try 2
+                    next(self.rls)
+                except (AttributeError, StopIteration, KeyError):
+                    vp = self.triangulated_vectors[0]
+                    self.rls = self.refine_local_space(*vp, bounds=self.bounds)
+                    next(self.rls)
+
+            except (AttributeError, KeyError):
+                # If an initial triangulation has not been completed, then
+                # we start/continue the initial triangulation targeting `nt`
+                # vertices, if nt is greater than the initial number of
+                # vertices then the `refine` routine will move back to try 1.
+                self.triangulate(nt, self.symmetry)
+        return
+
+    def refine_all(self, centroids=True):
+        """Refine the entire domain of the current complex."""
+        try:
+            self.triangulated_vectors
+            tvs = copy.copy(self.triangulated_vectors)
+            for i, vp in enumerate(tvs):
+                self.rls = self.refine_local_space(*vp, bounds=self.bounds)
+                for i in self.rls:
+                    i
+        except AttributeError as ae:
+            if str(ae) == "'Complex' object has no attribute " \
+                          "'triangulated_vectors'":
+                self.triangulate(symmetry=self.symmetry, centroid=centroids)
+            else:
+                raise
+
+        # This adds a centroid to every new sub-domain generated and defined
+        # by self.triangulated_vectors, in addition the vertices ! to complete
+        # the triangulation
+        return
+
+    def refine_local_space(self, origin, supremum, bounds, centroid=1):
+        # Copy for later removal
+        origin_c = copy.copy(origin)
+        supremum_c = copy.copy(supremum)
+
+        # Initiate local variables redefined in later inner `for` loop:
+        vl, vu, a_vu = None, None, None
+
+        # Change the vector orientation so that it is only increasing
+        s_ov = list(origin)
+        s_origin = list(origin)
+        s_sv = list(supremum)
+        s_supremum = list(supremum)
+        for i, vi in enumerate(s_origin):
+            if s_ov[i] > s_sv[i]:
+                s_origin[i] = s_sv[i]
+                s_supremum[i] = s_ov[i]
+
+        vot = tuple(s_origin)
+        vut = tuple(s_supremum)  # Hyperrectangle supremum
+
+        vo = self.V[vot]  # initiate if doesn't exist yet
+        vs = self.V[vut]
+        # Start by finding the old centroid of the new space:
+        vco = self.split_edge(vo.x, vs.x)  # Split in case not centroid arg
+
+        # Find set of extreme vertices in current local space
+        sup_set = copy.copy(vco.nn)
+        # Cyclic group approach with second x_l --- x_u operation.
+
+        # These containers store the "lower" and "upper" vertices
+        # corresponding to the origin or supremum of every C2 group.
+        # It has the structure of `dim` times embedded lists each containing
+        # these vertices as the entire complex grows. Bounds[0] has to be done
+        # outside the loops before we have symmetric containers.
+        # NOTE: This means that bounds[0][1] must always exist
+
+        a_vl = copy.copy(list(vot))
+        a_vl[0] = vut[0]  # Update aN Origin
+        if tuple(a_vl) not in self.V.cache:
+            vo = self.V[vot]  # initiate if doesn't exist yet
+            vs = self.V[vut]
+            # Start by finding the old centroid of the new space:
+            vco = self.split_edge(vo.x, vs.x)  # Split in case not centroid arg
+
+            # Find set of extreme vertices in current local space
+            sup_set = copy.copy(vco.nn)
+            a_vl = copy.copy(list(vot))
+            a_vl[0] = vut[0]  # Update aN Origin
+            a_vl = self.V[tuple(a_vl)]
+        else:
+            a_vl = self.V[tuple(a_vl)]
+
+        c_v = self.split_edge(vo.x, a_vl.x)
+        c_v.connect(vco)
+        yield c_v.x
+        Cox = [[vo]]
+        Ccx = [[c_v]]
+        Cux = [[a_vl]]
+        ab_C = []  # Container for a + b operations
+        s_ab_C = []  # Container for symmetric a + b operations
+
+        # Loop over remaining bounds
+        for i, x in enumerate(bounds[1:]):
+            # Update lower and upper containers
+            Cox.append([])
+            Ccx.append([])
+            Cux.append([])
+            # try to access a second bound (if not, C1 is symmetric)
+            try:
+                t_a_vl = list(vot)
+                t_a_vl[i + 1] = vut[i + 1]
+
+                # New: lists are used anyway, so copy all
+                # %%
+                # Copy lists for iteration
+                cCox = [x[:] for x in Cox[:i + 1]]
+                cCcx = [x[:] for x in Ccx[:i + 1]]
+                cCux = [x[:] for x in Cux[:i + 1]]
+                # Try to connect aN lower source of previous a + b
+                # operation with a aN vertex
+                ab_Cc = copy.copy(ab_C)  # NOTE: We append ab_C in the
+                # (VL, VC, VU) for-loop, but we use the copy of the list in the
+                # ab_Cc for-loop.
+                s_ab_Cc = copy.copy(s_ab_C)
+
+                # Early try so that we don't have to copy the cache before
+                # moving on to next C1/C2: Try to add the operation of a new
+                # C2 product by accessing the upper bound
+                if tuple(t_a_vl) not in self.V.cache:
+                    # Raise error to continue symmetric refine
+                    raise IndexError
+                t_a_vu = list(vut)
+                t_a_vu[i + 1] = vut[i + 1]
+                if tuple(t_a_vu) not in self.V.cache:
+                    # Raise error to continue symmetric refine:
+                    raise IndexError
+
+                for vectors in s_ab_Cc:
+                    # s_ab_C.append([c_vc, vl, vu, a_vu])
+                    bc_vc = list(vectors[0].x)
+                    b_vl = list(vectors[1].x)
+                    b_vu = list(vectors[2].x)
+                    ba_vu = list(vectors[3].x)
+
+                    bc_vc[i + 1] = vut[i + 1]
+                    b_vl[i + 1] = vut[i + 1]
+                    b_vu[i + 1] = vut[i + 1]
+                    ba_vu[i + 1] = vut[i + 1]
+
+                    bc_vc = self.V[tuple(bc_vc)]
+                    bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield bc_vc
+
+                    # Split to centre, call this centre group "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(bc_vc)
+                    d_bc_vc.connect(vectors[1])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[2])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[3])  # Connect all to centroid
+                    yield d_bc_vc.x
+                    b_vl = self.V[tuple(b_vl)]
+                    bc_vc.connect(b_vl)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vl)  # Connect all to centroid
+
+                    yield b_vl
+                    b_vu = self.V[tuple(b_vu)]
+                    bc_vc.connect(b_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vu)  # Connect all to centroid
+
+                    b_vl_c = self.split_edge(b_vu.x, b_vl.x)
+                    bc_vc.connect(b_vl_c)
+
+                    yield b_vu
+                    ba_vu = self.V[tuple(ba_vu)]
+                    bc_vc.connect(ba_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(ba_vu)  # Connect all to centroid
+
+                    # Split the a + b edge of the initial triangulation:
+                    os_v = self.split_edge(vectors[1].x, ba_vu.x)  # o-s
+                    ss_v = self.split_edge(b_vl.x, ba_vu.x)  # s-s
+                    b_vu_c = self.split_edge(b_vu.x, ba_vu.x)
+                    bc_vc.connect(b_vu_c)
+                    yield os_v.x  # often equal to vco, but not always
+                    yield ss_v.x  # often equal to bc_vu, but not always
+                    yield ba_vu
+                    # Split remaining to centre, call this centre group
+                    # "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield d_bc_vc.x
+                    d_b_vl = self.split_edge(vectors[1].x, b_vl.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vl)  # Connect dN cross pairs
+                    yield d_b_vl.x
+                    d_b_vu = self.split_edge(vectors[2].x, b_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vu)  # Connect dN cross pairs
+                    yield d_b_vu.x
+                    d_ba_vu = self.split_edge(vectors[3].x, ba_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_ba_vu)  # Connect dN cross pairs
+                    yield d_ba_vu
+
+                    # comb = [c_vc, vl, vu, a_vl, a_vu,
+                    #       bc_vc, b_vl, b_vu, ba_vl, ba_vu]
+                    comb = [vl, vu, a_vu,
+                            b_vl, b_vu, ba_vu]
+                    comb_iter = itertools.combinations(comb, 2)
+                    for vecs in comb_iter:
+                        self.split_edge(vecs[0].x, vecs[1].x)
+                    # Add new list of cross pairs
+                    ab_C.append((d_bc_vc, vectors[1], b_vl, a_vu, ba_vu))
+                    ab_C.append((d_bc_vc, vl, b_vl, a_vu, ba_vu))  # = prev
+
+                for vectors in ab_Cc:
+                    bc_vc = list(vectors[0].x)
+                    b_vl = list(vectors[1].x)
+                    b_vu = list(vectors[2].x)
+                    ba_vl = list(vectors[3].x)
+                    ba_vu = list(vectors[4].x)
+                    bc_vc[i + 1] = vut[i + 1]
+                    b_vl[i + 1] = vut[i + 1]
+                    b_vu[i + 1] = vut[i + 1]
+                    ba_vl[i + 1] = vut[i + 1]
+                    ba_vu[i + 1] = vut[i + 1]
+                    bc_vc = self.V[tuple(bc_vc)]
+                    bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield bc_vc
+
+                    # Split to centre, call this centre group "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(bc_vc)
+                    d_bc_vc.connect(vectors[1])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[2])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[3])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[4])  # Connect all to centroid
+                    yield d_bc_vc.x
+                    b_vl = self.V[tuple(b_vl)]
+                    bc_vc.connect(b_vl)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vl)  # Connect all to centroid
+                    yield b_vl
+                    b_vu = self.V[tuple(b_vu)]
+                    bc_vc.connect(b_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(b_vu)  # Connect all to centroid
+                    yield b_vu
+                    ba_vl = self.V[tuple(ba_vl)]
+                    bc_vc.connect(ba_vl)  # Connect aN cross pairs
+                    d_bc_vc.connect(ba_vl)  # Connect all to centroid
+                    self.split_edge(b_vu.x, ba_vl.x)
+                    yield ba_vl
+                    ba_vu = self.V[tuple(ba_vu)]
+                    bc_vc.connect(ba_vu)  # Connect aN cross pairs
+                    d_bc_vc.connect(ba_vu)  # Connect all to centroid
+                    # Split the a + b edge of the initial triangulation:
+                    os_v = self.split_edge(vectors[1].x, ba_vu.x)  # o-s
+                    ss_v = self.split_edge(b_vl.x, ba_vu.x)  # s-s
+                    yield os_v.x  # often equal to vco, but not always
+                    yield ss_v.x  # often equal to bc_vu, but not always
+                    yield ba_vu
+                    # Split remaining to centre, call this centre group
+                    # "d = 0.5*a"
+                    d_bc_vc = self.split_edge(vectors[0].x, bc_vc.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    yield d_bc_vc.x
+                    d_b_vl = self.split_edge(vectors[1].x, b_vl.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vl)  # Connect dN cross pairs
+                    yield d_b_vl.x
+                    d_b_vu = self.split_edge(vectors[2].x, b_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_b_vu)  # Connect dN cross pairs
+                    yield d_b_vu.x
+                    d_ba_vl = self.split_edge(vectors[3].x, ba_vl.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_ba_vl)  # Connect dN cross pairs
+                    yield d_ba_vl
+                    d_ba_vu = self.split_edge(vectors[4].x, ba_vu.x)
+                    d_bc_vc.connect(vco)  # NOTE: Unneeded?
+                    d_bc_vc.connect(d_ba_vu)  # Connect dN cross pairs
+                    yield d_ba_vu
+                    c_vc, vl, vu, a_vl, a_vu = vectors
+
+                    comb = [vl, vu, a_vl, a_vu,
+                            b_vl, b_vu, ba_vl, ba_vu]
+                    comb_iter = itertools.combinations(comb, 2)
+                    for vecs in comb_iter:
+                        self.split_edge(vecs[0].x, vecs[1].x)
+
+                    # Add new list of cross pairs
+                    ab_C.append((bc_vc, b_vl, b_vu, ba_vl, ba_vu))
+                    ab_C.append((d_bc_vc, d_b_vl, d_b_vu, d_ba_vl, d_ba_vu))
+                    ab_C.append((d_bc_vc, vectors[1], b_vl, a_vu, ba_vu))
+                    ab_C.append((d_bc_vc, vu, b_vu, a_vl, ba_vl))
+
+                for j, (VL, VC, VU) in enumerate(zip(cCox, cCcx, cCux)):
+                    for k, (vl, vc, vu) in enumerate(zip(VL, VC, VU)):
+                        # Build aN vertices for each lower-upper C3 group in N:
+                        a_vl = list(vl.x)
+                        a_vu = list(vu.x)
+                        a_vl[i + 1] = vut[i + 1]
+                        a_vu[i + 1] = vut[i + 1]
+                        a_vl = self.V[tuple(a_vl)]
+                        a_vu = self.V[tuple(a_vu)]
+                        # Note, build (a + vc) later for consistent yields
+                        # Split the a + b edge of the initial triangulation:
+                        c_vc = self.split_edge(vl.x, a_vu.x)
+                        self.split_edge(vl.x, vu.x)  # Equal to vc
+                        # Build cN vertices for each lower-upper C3 group in N:
+                        c_vc.connect(vco)
+                        c_vc.connect(vc)
+                        c_vc.connect(vl)  # Connect c + ac operations
+                        c_vc.connect(vu)  # Connect c + ac operations
+                        c_vc.connect(a_vl)  # Connect c + ac operations
+                        c_vc.connect(a_vu)  # Connect c + ac operations
+                        yield c_vc.x
+                        c_vl = self.split_edge(vl.x, a_vl.x)
+                        c_vl.connect(vco)
+                        c_vc.connect(c_vl)  # Connect cN group vertices
+                        yield c_vl.x
+                        # yield at end of loop:
+                        c_vu = self.split_edge(vu.x, a_vu.x)
+                        c_vu.connect(vco)
+                        # Connect remaining cN group vertices
+                        c_vc.connect(c_vu)  # Connect cN group vertices
+                        yield c_vu.x
+
+                        a_vc = self.split_edge(a_vl.x, a_vu.x)  # is (a + vc) ?
+                        a_vc.connect(vco)
+                        a_vc.connect(c_vc)
+
+                        # Storage for connecting c + ac operations:
+                        ab_C.append((c_vc, vl, vu, a_vl, a_vu))
+
+                        # Update the containers
+                        Cox[i + 1].append(vl)
+                        Cox[i + 1].append(vc)
+                        Cox[i + 1].append(vu)
+                        Ccx[i + 1].append(c_vl)
+                        Ccx[i + 1].append(c_vc)
+                        Ccx[i + 1].append(c_vu)
+                        Cux[i + 1].append(a_vl)
+                        Cux[i + 1].append(a_vc)
+                        Cux[i + 1].append(a_vu)
+
+                        # Update old containers
+                        Cox[j].append(c_vl)  # !
+                        Cox[j].append(a_vl)
+                        Ccx[j].append(c_vc)  # !
+                        Ccx[j].append(a_vc)  # !
+                        Cux[j].append(c_vu)  # !
+                        Cux[j].append(a_vu)
+
+                        # Yield new points
+                        yield a_vc.x
+
+            except IndexError:
+                for vectors in ab_Cc:
+                    ba_vl = list(vectors[3].x)
+                    ba_vu = list(vectors[4].x)
+                    ba_vl[i + 1] = vut[i + 1]
+                    ba_vu[i + 1] = vut[i + 1]
+                    ba_vu = self.V[tuple(ba_vu)]
+                    yield ba_vu
+                    d_bc_vc = self.split_edge(vectors[1].x, ba_vu.x)  # o-s
+                    yield ba_vu
+                    d_bc_vc.connect(vectors[1])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[2])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[3])  # Connect all to centroid
+                    d_bc_vc.connect(vectors[4])  # Connect all to centroid
+                    yield d_bc_vc.x
+                    ba_vl = self.V[tuple(ba_vl)]
+                    yield ba_vl
+                    d_ba_vl = self.split_edge(vectors[3].x, ba_vl.x)
+                    d_ba_vu = self.split_edge(vectors[4].x, ba_vu.x)
+                    d_ba_vc = self.split_edge(d_ba_vl.x, d_ba_vu.x)
+                    yield d_ba_vl
+                    yield d_ba_vu
+                    yield d_ba_vc
+                    c_vc, vl, vu, a_vl, a_vu = vectors
+                    comb = [vl, vu, a_vl, a_vu,
+                            ba_vl,
+                            ba_vu]
+                    comb_iter = itertools.combinations(comb, 2)
+                    for vecs in comb_iter:
+                        self.split_edge(vecs[0].x, vecs[1].x)
+
+                # Copy lists for iteration
+                cCox = Cox[i]
+                cCcx = Ccx[i]
+                cCux = Cux[i]
+                VL, VC, VU = cCox, cCcx, cCux
+                for k, (vl, vc, vu) in enumerate(zip(VL, VC, VU)):
+                    # Build aN vertices for each lower-upper pair in N:
+                    a_vu = list(vu.x)
+                    a_vu[i + 1] = vut[i + 1]
+
+                    # Connect vertices in N to corresponding vertices
+                    # in aN:
+                    a_vu = self.V[tuple(a_vu)]
+                    yield a_vl.x
+                    # Split the a + b edge of the initial triangulation:
+                    c_vc = self.split_edge(vl.x, a_vu.x)
+                    self.split_edge(vl.x, vu.x)  # Equal to vc
+                    c_vc.connect(vco)
+                    c_vc.connect(vc)
+                    c_vc.connect(vl)  # Connect c + ac operations
+                    c_vc.connect(vu)  # Connect c + ac operations
+                    c_vc.connect(a_vu)  # Connect c + ac operations
+                    yield (c_vc.x)
+                    c_vu = self.split_edge(vu.x,
+                                           a_vu.x)  # yield at end of loop
+                    c_vu.connect(vco)
+                    # Connect remaining cN group vertices
+                    c_vc.connect(c_vu)  # Connect cN group vertices
+                    yield (c_vu.x)
+
+                    # Update the containers
+                    Cox[i + 1].append(vu)
+                    Ccx[i + 1].append(c_vu)
+                    Cux[i + 1].append(a_vu)
+
+                    # Update old containers
+                    s_ab_C.append([c_vc, vl, vu, a_vu])
+
+                    yield a_vu.x
+
+        # Clean class trash
+        try:
+            del Cox
+            del Ccx
+            del Cux
+            del ab_C
+            del ab_Cc
+        except UnboundLocalError:
+            pass
+
+        try:
+            self.triangulated_vectors.remove((tuple(origin_c),
+                                              tuple(supremum_c)))
+        except ValueError:
+            # Turn this into a logging warning?
+            pass
+        # Add newly triangulated vectors:
+        for vs in sup_set:
+            self.triangulated_vectors.append((tuple(vco.x), tuple(vs.x)))
+
+        # Extra yield to ensure that the triangulation is completed
+        if centroid:
+            vcn_set = set()
+            c_nn_lists = []
+            for vs in sup_set:
+                # Build centroid
+                c_nn = self.vpool(vco.x, vs.x)
+                try:
+                    c_nn.remove(vcn_set)
+                except KeyError:
+                    pass
+                c_nn_lists.append(c_nn)
+
+            for c_nn in c_nn_lists:
+                try:
+                    c_nn.remove(vcn_set)
+                except KeyError:
+                    pass
+
+            for vs, c_nn in zip(sup_set, c_nn_lists):
+                # Build centroid
+                vcn = self.split_edge(vco.x, vs.x)
+                vcn_set.add(vcn)
+                try:  # Shouldn't be needed?
+                    c_nn.remove(vcn_set)
+                except KeyError:
+                    pass
+                for vnn in c_nn:
+                    vcn.connect(vnn)
+                yield vcn.x
+        else:
+            pass
+
+        yield vut
+        return
+
+    def refine_star(self, v):
+        """Refine the star domain of a vertex `v`."""
+        # Copy lists before iteration
+        vnn = copy.copy(v.nn)
+        v1nn = []
+        d_v0v1_set = set()
+        for v1 in vnn:
+            v1nn.append(copy.copy(v1.nn))
+
+        for v1, v1nn in zip(vnn, v1nn):
+            vnnu = v1nn.intersection(vnn)
+
+            d_v0v1 = self.split_edge(v.x, v1.x)
+            for o_d_v0v1 in d_v0v1_set:
+                d_v0v1.connect(o_d_v0v1)
+            d_v0v1_set.add(d_v0v1)
+            for v2 in vnnu:
+                d_v1v2 = self.split_edge(v1.x, v2.x)
+                d_v0v1.connect(d_v1v2)
+        return
+
+    @cache
+    def split_edge(self, v1, v2):
+        v1 = self.V[v1]
+        v2 = self.V[v2]
+        # Destroy original edge, if it exists:
+        v1.disconnect(v2)
+        # Compute vertex on centre of edge:
+        try:
+            vct = (v2.x_a - v1.x_a) / 2.0 + v1.x_a
+        except TypeError:  # Allow for decimal operations
+            vct = (v2.x_a - v1.x_a) / decimal.Decimal(2.0) + v1.x_a
+
+        vc = self.V[tuple(vct)]
+        # Connect to original 2 vertices to the new centre vertex
+        vc.connect(v1)
+        vc.connect(v2)
+        return vc
+
+    def vpool(self, origin, supremum):
+        vot = tuple(origin)
+        vst = tuple(supremum)
+        # Initiate vertices in case they don't exist
+        vo = self.V[vot]
+        vs = self.V[vst]
+
+        # Remove origin - supremum disconnect
+
+        # Find the lower/upper bounds of the refinement hyperrectangle
+        bl = list(vot)
+        bu = list(vst)
+        for i, (voi, vsi) in enumerate(zip(vot, vst)):
+            if bl[i] > vsi:
+                bl[i] = vsi
+            if bu[i] < voi:
+                bu[i] = voi
+
+        #      NOTE: This is mostly done with sets/lists because we aren't sure
+        #            how well the numpy arrays will scale to thousands of
+        #             dimensions.
+        vn_pool = set()
+        vn_pool.update(vo.nn)
+        vn_pool.update(vs.nn)
+        cvn_pool = copy.copy(vn_pool)
+        for vn in cvn_pool:
+            for i, xi in enumerate(vn.x):
+                if bl[i] <= xi <= bu[i]:
+                    pass
+                else:
+                    try:
+                        vn_pool.remove(vn)
+                    except KeyError:
+                        pass  # NOTE: Not all neigbouds are in initial pool
+        return vn_pool
+
+    def vf_to_vv(self, vertices, simplices):
+        """
+        Convert a vertex-face mesh to a vertex-vertex mesh used by this class
+
+        Parameters
+        ----------
+        vertices : list
+            Vertices
+        simplices : list
+            Simplices
+        """
+        if self.dim > 1:
+            for s in simplices:
+                edges = itertools.combinations(s, self.dim)
+                for e in edges:
+                    self.V[tuple(vertices[e[0]])].connect(
+                        self.V[tuple(vertices[e[1]])])
+        else:
+            for e in simplices:
+                self.V[tuple(vertices[e[0]])].connect(
+                    self.V[tuple(vertices[e[1]])])
+        return
+
+    def connect_vertex_non_symm(self, v_x, near=None):
+        """
+        Adds a vertex at coords v_x to the complex that is not symmetric to the
+        initial triangulation and sub-triangulation.
+
+        If near is specified (for example; a star domain or collections of
+        cells known to contain v) then only those simplices containd in near
+        will be searched, this greatly speeds up the process.
+
+        If near is not specified this method will search the entire simplicial
+        complex structure.
+
+        Parameters
+        ----------
+        v_x : tuple
+            Coordinates of non-symmetric vertex
+        near : set or list
+            List of vertices, these are points near v to check for
+        """
+        if near is None:
+            star = self.V
+        else:
+            star = near
+        # Create the vertex origin
+        if tuple(v_x) in self.V.cache:
+            if self.V[v_x] in self.V_non_symm:
+                pass
+            else:
+                return
+
+        self.V[v_x]
+        found_nn = False
+        S_rows = []
+        for v in star:
+            S_rows.append(v.x)
+
+        S_rows = numpy.array(S_rows)
+        A = numpy.array(S_rows) - numpy.array(v_x)
+        # Iterate through all the possible simplices of S_rows
+        for s_i in itertools.combinations(range(S_rows.shape[0]),
+                                          r=self.dim + 1):
+            # Check if connected, else s_i is not a simplex
+            valid_simplex = True
+            for i in itertools.combinations(s_i, r=2):
+                # Every combination of vertices must be connected, we check of
+                # the current iteration of all combinations of s_i are
+                # connected we break the loop if it is not.
+                if ((self.V[tuple(S_rows[i[1]])] not in
+                        self.V[tuple(S_rows[i[0]])].nn)
+                    and (self.V[tuple(S_rows[i[0]])] not in
+                         self.V[tuple(S_rows[i[1]])].nn)):
+                    valid_simplex = False
+                    break
+
+            S = S_rows[tuple([s_i])]
+            if valid_simplex:
+                if self.deg_simplex(S, proj=None):
+                    valid_simplex = False
+
+            # If s_i is a valid simplex we can test if v_x is inside si
+            if valid_simplex:
+                # Find the A_j0 value from the precalculated values
+                A_j0 = A[tuple([s_i])]
+                if self.in_simplex(S, v_x, A_j0):
+                    found_nn = True
+                    # breaks the main for loop, s_i is the target simplex:
+                    break
+
+        # Connect the simplex to point
+        if found_nn:
+            for i in s_i:
+                self.V[v_x].connect(self.V[tuple(S_rows[i])])
+        # Attached the simplex to storage for all non-symmetric vertices
+        self.V_non_symm.append(self.V[v_x])
+        # this bool value indicates a successful connection if True:
+        return found_nn
+
+    def in_simplex(self, S, v_x, A_j0=None):
+        """Check if a vector v_x is in simplex `S`.
+
+        Parameters
+        ----------
+        S : array_like
+            Array containing simplex entries of vertices as rows
+        v_x :
+            A candidate vertex
+        A_j0 : array, optional,
+            Allows for A_j0 to be pre-calculated
+
+        Returns
+        -------
+        res : boolean
+            True if `v_x` is in `S`
+        """
+        A_11 = numpy.delete(S, 0, 0) - S[0]
+
+        sign_det_A_11 = numpy.sign(numpy.linalg.det(A_11))
+        if sign_det_A_11 == 0:
+            # NOTE: We keep the variable A_11, but we loop through A_jj
+            # ind=
+            # while sign_det_A_11 == 0:
+            #    A_11 = numpy.delete(S, ind, 0) - S[ind]
+            #    sign_det_A_11 = numpy.sign(numpy.linalg.det(A_11))
+
+            sign_det_A_11 = -1  # TODO: Choose another det of j instead?
+            # TODO: Unlikely to work in many cases
+
+        if A_j0 is None:
+            A_j0 = S - v_x
+
+        for d in range(self.dim + 1):
+            det_A_jj = (-1)**d * sign_det_A_11
+            # TODO: Note that scipy might be faster to add as an optional
+            #       dependency
+            sign_det_A_j0 = numpy.sign(numpy.linalg.det(numpy.delete(A_j0, d,
+                                                                     0)))
+            # TODO: Note if sign_det_A_j0 == then the point is coplanar to the
+            #       current simplex facet, so perhaps return True and attach?
+            if det_A_jj == sign_det_A_j0:
+                continue
+            else:
+                return False
+
+        return True
+
+    def deg_simplex(self, S, proj=None):
+        """Test a simplex S for degeneracy (linear dependence in R^dim).
+
+        Parameters
+        ----------
+        S : np.array
+            Simplex with rows as vertex vectors
+        proj : array, optional,
+            If the projection S[1:] - S[0] is already
+            computed it can be added as an optional argument.
+        """
+        # Strategy: we test all combination of faces, if any of the
+        # determinants are zero then the vectors lie on the same face and is
+        # therefore linearly dependent in the space of R^dim
+        if proj is None:
+            proj = S[1:] - S[0]
+
+        # TODO: Is checking the projection of one vertex against faces of other
+        #       vertices sufficient? Or do we need to check more vertices in
+        #       dimensions higher than 2?
+        # TODO: Literature seems to suggest using proj.T, but why is this
+        #       needed?
+        if numpy.linalg.det(proj) == 0.0:  # TODO: Repalace with tolerance?
+            return True  # Simplex is degenerate
+        else:
+            return False  # Simplex is not degenerate

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_shgo_lib/_vertex.py

@@ -0,0 +1,460 @@
+import collections
+from abc import ABC, abstractmethod
+
+import numpy as np
+
+from scipy._lib._util import MapWrapper
+
+
+class VertexBase(ABC):
+    """
+    Base class for a vertex.
+    """
+    def __init__(self, x, nn=None, index=None):
+        """
+        Initiation of a vertex object.
+
+        Parameters
+        ----------
+        x : tuple or vector
+            The geometric location (domain).
+        nn : list, optional
+            Nearest neighbour list.
+        index : int, optional
+            Index of vertex.
+        """
+        self.x = x
+        self.hash = hash(self.x)  # Save precomputed hash
+
+        if nn is not None:
+            self.nn = set(nn)  # can use .indexupdate to add a new list
+        else:
+            self.nn = set()
+
+        self.index = index
+
+    def __hash__(self):
+        return self.hash
+
+    def __getattr__(self, item):
+        if item not in ['x_a']:
+            raise AttributeError(f"{type(self)} object has no attribute "
+                                 f"'{item}'")
+        if item == 'x_a':
+            self.x_a = np.array(self.x)
+            return self.x_a
+
+    @abstractmethod
+    def connect(self, v):
+        raise NotImplementedError("This method is only implemented with an "
+                                  "associated child of the base class.")
+
+    @abstractmethod
+    def disconnect(self, v):
+        raise NotImplementedError("This method is only implemented with an "
+                                  "associated child of the base class.")
+
+    def star(self):
+        """Returns the star domain ``st(v)`` of the vertex.
+
+        Parameters
+        ----------
+        v :
+            The vertex ``v`` in ``st(v)``
+
+        Returns
+        -------
+        st : set
+            A set containing all the vertices in ``st(v)``
+        """
+        self.st = self.nn
+        self.st.add(self)
+        return self.st
+
+
+class VertexScalarField(VertexBase):
+    """
+    Add homology properties of a scalar field f: R^n --> R associated with
+    the geometry built from the VertexBase class
+    """
+
+    def __init__(self, x, field=None, nn=None, index=None, field_args=(),
+                 g_cons=None, g_cons_args=()):
+        """
+        Parameters
+        ----------
+        x : tuple,
+            vector of vertex coordinates
+        field : callable, optional
+            a scalar field f: R^n --> R associated with the geometry
+        nn : list, optional
+            list of nearest neighbours
+        index : int, optional
+            index of the vertex
+        field_args : tuple, optional
+            additional arguments to be passed to field
+        g_cons : callable, optional
+            constraints on the vertex
+        g_cons_args : tuple, optional
+            additional arguments to be passed to g_cons
+
+        """
+        super().__init__(x, nn=nn, index=index)
+
+        # Note Vertex is only initiated once for all x so only
+        # evaluated once
+        # self.feasible = None
+
+        # self.f is externally defined by the cache to allow parallel
+        # processing
+        # None type that will break arithmetic operations unless defined
+        # self.f = None
+
+        self.check_min = True
+        self.check_max = True
+
+    def connect(self, v):
+        """Connects self to another vertex object v.
+
+        Parameters
+        ----------
+        v : VertexBase or VertexScalarField object
+        """
+        if v is not self and v not in self.nn:
+            self.nn.add(v)
+            v.nn.add(self)
+
+            # Flags for checking homology properties:
+            self.check_min = True
+            self.check_max = True
+            v.check_min = True
+            v.check_max = True
+
+    def disconnect(self, v):
+        if v in self.nn:
+            self.nn.remove(v)
+            v.nn.remove(self)
+
+            # Flags for checking homology properties:
+            self.check_min = True
+            self.check_max = True
+            v.check_min = True
+            v.check_max = True
+
+    def minimiser(self):
+        """Check whether this vertex is strictly less than all its
+           neighbours"""
+        if self.check_min:
+            self._min = all(self.f < v.f for v in self.nn)
+            self.check_min = False
+
+        return self._min
+
+    def maximiser(self):
+        """
+        Check whether this vertex is strictly greater than all its
+        neighbours.
+        """
+        if self.check_max:
+            self._max = all(self.f > v.f for v in self.nn)
+            self.check_max = False
+
+        return self._max
+
+
+class VertexVectorField(VertexBase):
+    """
+    Add homology properties of a scalar field f: R^n --> R^m associated with
+    the geometry built from the VertexBase class.
+    """
+
+    def __init__(self, x, sfield=None, vfield=None, field_args=(),
+                 vfield_args=(), g_cons=None,
+                 g_cons_args=(), nn=None, index=None):
+        super().__init__(x, nn=nn, index=index)
+
+        raise NotImplementedError("This class is still a work in progress")
+
+
+class VertexCacheBase:
+    """Base class for a vertex cache for a simplicial complex."""
+    def __init__(self):
+
+        self.cache = collections.OrderedDict()
+        self.nfev = 0  # Feasible points
+        self.index = -1
+
+    def __iter__(self):
+        for v in self.cache:
+            yield self.cache[v]
+        return
+
+    def size(self):
+        """Returns the size of the vertex cache."""
+        return self.index + 1
+
+    def print_out(self):
+        headlen = len(f"Vertex cache of size: {len(self.cache)}:")
+        print('=' * headlen)
+        print(f"Vertex cache of size: {len(self.cache)}:")
+        print('=' * headlen)
+        for v in self.cache:
+            self.cache[v].print_out()
+
+
+class VertexCube(VertexBase):
+    """Vertex class to be used for a pure simplicial complex with no associated
+    differential geometry (single level domain that exists in R^n)"""
+    def __init__(self, x, nn=None, index=None):
+        super().__init__(x, nn=nn, index=index)
+
+    def connect(self, v):
+        if v is not self and v not in self.nn:
+            self.nn.add(v)
+            v.nn.add(self)
+
+    def disconnect(self, v):
+        if v in self.nn:
+            self.nn.remove(v)
+            v.nn.remove(self)
+
+
+class VertexCacheIndex(VertexCacheBase):
+    def __init__(self):
+        """
+        Class for a vertex cache for a simplicial complex without an associated
+        field. Useful only for building and visualising a domain complex.
+
+        Parameters
+        ----------
+        """
+        super().__init__()
+        self.Vertex = VertexCube
+
+    def __getitem__(self, x, nn=None):
+        try:
+            return self.cache[x]
+        except KeyError:
+            self.index += 1
+            xval = self.Vertex(x, index=self.index)
+            # logging.info("New generated vertex at x = {}".format(x))
+            # NOTE: Surprisingly high performance increase if logging
+            # is commented out
+            self.cache[x] = xval
+            return self.cache[x]
+
+
+class VertexCacheField(VertexCacheBase):
+    def __init__(self, field=None, field_args=(), g_cons=None, g_cons_args=(),
+                 workers=1):
+        """
+        Class for a vertex cache for a simplicial complex with an associated
+        field.
+
+        Parameters
+        ----------
+        field : callable
+            Scalar or vector field callable.
+        field_args : tuple, optional
+            Any additional fixed parameters needed to completely specify the
+            field function
+        g_cons : dict or sequence of dict, optional
+            Constraints definition.
+            Function(s) ``R**n`` in the form::
+        g_cons_args : tuple, optional
+            Any additional fixed parameters needed to completely specify the
+            constraint functions
+        workers : int  optional
+            Uses `multiprocessing.Pool <multiprocessing>`) to compute the field
+             functions in parallel.
+
+        """
+        super().__init__()
+        self.index = -1
+        self.Vertex = VertexScalarField
+        self.field = field
+        self.field_args = field_args
+        self.wfield = FieldWrapper(field, field_args)  # if workers is not 1
+
+        self.g_cons = g_cons
+        self.g_cons_args = g_cons_args
+        self.wgcons = ConstraintWrapper(g_cons, g_cons_args)
+        self.gpool = set()  # A set of tuples to process for feasibility
+
+        # Field processing objects
+        self.fpool = set()  # A set of tuples to process for scalar function
+        self.sfc_lock = False  # True if self.fpool is non-Empty
+
+        self.workers = workers
+        self._mapwrapper = MapWrapper(workers)
+
+        if workers == 1:
+            self.process_gpool = self.proc_gpool
+            if g_cons is None:
+                self.process_fpool = self.proc_fpool_nog
+            else:
+                self.process_fpool = self.proc_fpool_g
+        else:
+            self.process_gpool = self.pproc_gpool
+            if g_cons is None:
+                self.process_fpool = self.pproc_fpool_nog
+            else:
+                self.process_fpool = self.pproc_fpool_g
+
+    def __getitem__(self, x, nn=None):
+        try:
+            return self.cache[x]
+        except KeyError:
+            self.index += 1
+            xval = self.Vertex(x, field=self.field, nn=nn, index=self.index,
+                               field_args=self.field_args,
+                               g_cons=self.g_cons,
+                               g_cons_args=self.g_cons_args)
+
+            self.cache[x] = xval  # Define in cache
+            self.gpool.add(xval)  # Add to pool for processing feasibility
+            self.fpool.add(xval)  # Add to pool for processing field values
+            return self.cache[x]
+
+    def __getstate__(self):
+        self_dict = self.__dict__.copy()
+        del self_dict['pool']
+        return self_dict
+
+    def process_pools(self):
+        if self.g_cons is not None:
+            self.process_gpool()
+        self.process_fpool()
+        self.proc_minimisers()
+
+    def feasibility_check(self, v):
+        v.feasible = True
+        for g, args in zip(self.g_cons, self.g_cons_args):
+            # constraint may return more than 1 value.
+            if np.any(g(v.x_a, *args) < 0.0):
+                v.f = np.inf
+                v.feasible = False
+                break
+
+    def compute_sfield(self, v):
+        """Compute the scalar field values of a vertex object `v`.
+
+        Parameters
+        ----------
+        v : VertexBase or VertexScalarField object
+        """
+        try:
+            v.f = self.field(v.x_a, *self.field_args)
+            self.nfev += 1
+        except AttributeError:
+            v.f = np.inf
+            # logging.warning(f"Field function not found at x = {self.x_a}")
+        if np.isnan(v.f):
+            v.f = np.inf
+
+    def proc_gpool(self):
+        """Process all constraints."""
+        if self.g_cons is not None:
+            for v in self.gpool:
+                self.feasibility_check(v)
+        # Clean the pool
+        self.gpool = set()
+
+    def pproc_gpool(self):
+        """Process all constraints in parallel."""
+        gpool_l = []
+        for v in self.gpool:
+            gpool_l.append(v.x_a)
+
+        G = self._mapwrapper(self.wgcons.gcons, gpool_l)
+        for v, g in zip(self.gpool, G):
+            v.feasible = g  # set vertex object attribute v.feasible = g (bool)
+
+    def proc_fpool_g(self):
+        """Process all field functions with constraints supplied."""
+        for v in self.fpool:
+            if v.feasible:
+                self.compute_sfield(v)
+        # Clean the pool
+        self.fpool = set()
+
+    def proc_fpool_nog(self):
+        """Process all field functions with no constraints supplied."""
+        for v in self.fpool:
+            self.compute_sfield(v)
+        # Clean the pool
+        self.fpool = set()
+
+    def pproc_fpool_g(self):
+        """
+        Process all field functions with constraints supplied in parallel.
+        """
+        self.wfield.func
+        fpool_l = []
+        for v in self.fpool:
+            if v.feasible:
+                fpool_l.append(v.x_a)
+            else:
+                v.f = np.inf
+        F = self._mapwrapper(self.wfield.func, fpool_l)
+        for va, f in zip(fpool_l, F):
+            vt = tuple(va)
+            self[vt].f = f  # set vertex object attribute v.f = f
+            self.nfev += 1
+        # Clean the pool
+        self.fpool = set()
+
+    def pproc_fpool_nog(self):
+        """
+        Process all field functions with no constraints supplied in parallel.
+        """
+        self.wfield.func
+        fpool_l = []
+        for v in self.fpool:
+            fpool_l.append(v.x_a)
+        F = self._mapwrapper(self.wfield.func, fpool_l)
+        for va, f in zip(fpool_l, F):
+            vt = tuple(va)
+            self[vt].f = f  # set vertex object attribute v.f = f
+            self.nfev += 1
+        # Clean the pool
+        self.fpool = set()
+
+    def proc_minimisers(self):
+        """Check for minimisers."""
+        for v in self:
+            v.minimiser()
+            v.maximiser()
+
+
+class ConstraintWrapper:
+    """Object to wrap constraints to pass to `multiprocessing.Pool`."""
+    def __init__(self, g_cons, g_cons_args):
+        self.g_cons = g_cons
+        self.g_cons_args = g_cons_args
+
+    def gcons(self, v_x_a):
+        vfeasible = True
+        for g, args in zip(self.g_cons, self.g_cons_args):
+            # constraint may return more than 1 value.
+            if np.any(g(v_x_a, *args) < 0.0):
+                vfeasible = False
+                break
+        return vfeasible
+
+
+class FieldWrapper:
+    """Object to wrap field to pass to `multiprocessing.Pool`."""
+    def __init__(self, field, field_args):
+        self.field = field
+        self.field_args = field_args
+
+    def func(self, v_x_a):
+        try:
+            v_f = self.field(v_x_a, *self.field_args)
+        except Exception:
+            v_f = np.inf
+        if np.isnan(v_f):
+            v_f = np.inf
+
+        return v_f

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/__init__.py

@@ -0,0 +1,6 @@
+"""This module contains the equality constrained SQP solver."""
+
+
+from .minimize_trustregion_constr import _minimize_trustregion_constr
+
+__all__ = ['_minimize_trustregion_constr']

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/canonical_constraint.py

@@ -0,0 +1,390 @@
+import numpy as np
+import scipy.sparse as sps
+
+
+class CanonicalConstraint:
+    """Canonical constraint to use with trust-constr algorithm.
+
+    It represents the set of constraints of the form::
+
+        f_eq(x) = 0
+        f_ineq(x) <= 0
+
+    where ``f_eq`` and ``f_ineq`` are evaluated by a single function, see
+    below.
+
+    The class is supposed to be instantiated by factory methods, which
+    should prepare the parameters listed below.
+
+    Parameters
+    ----------
+    n_eq, n_ineq : int
+        Number of equality and inequality constraints respectively.
+    fun : callable
+        Function defining the constraints. The signature is
+        ``fun(x) -> c_eq, c_ineq``, where ``c_eq`` is ndarray with `n_eq`
+        components and ``c_ineq`` is ndarray with `n_ineq` components.
+    jac : callable
+        Function to evaluate the Jacobian of the constraint. The signature
+        is ``jac(x) -> J_eq, J_ineq``, where ``J_eq`` and ``J_ineq`` are
+        either ndarray of csr_matrix of shapes (n_eq, n) and (n_ineq, n),
+        respectively.
+    hess : callable
+        Function to evaluate the Hessian of the constraints multiplied
+        by Lagrange multipliers, that is
+        ``dot(f_eq, v_eq) + dot(f_ineq, v_ineq)``. The signature is
+        ``hess(x, v_eq, v_ineq) -> H``, where ``H`` has an implied
+        shape (n, n) and provide a matrix-vector product operation
+        ``H.dot(p)``.
+    keep_feasible : ndarray, shape (n_ineq,)
+        Mask indicating which inequality constraints should be kept feasible.
+    """
+    def __init__(self, n_eq, n_ineq, fun, jac, hess, keep_feasible):
+        self.n_eq = n_eq
+        self.n_ineq = n_ineq
+        self.fun = fun
+        self.jac = jac
+        self.hess = hess
+        self.keep_feasible = keep_feasible
+
+    @classmethod
+    def from_PreparedConstraint(cls, constraint):
+        """Create an instance from `PreparedConstrained` object."""
+        lb, ub = constraint.bounds
+        cfun = constraint.fun
+        keep_feasible = constraint.keep_feasible
+
+        if np.all(lb == -np.inf) and np.all(ub == np.inf):
+            return cls.empty(cfun.n)
+
+        if np.all(lb == -np.inf) and np.all(ub == np.inf):
+            return cls.empty(cfun.n)
+        elif np.all(lb == ub):
+            return cls._equal_to_canonical(cfun, lb)
+        elif np.all(lb == -np.inf):
+            return cls._less_to_canonical(cfun, ub, keep_feasible)
+        elif np.all(ub == np.inf):
+            return cls._greater_to_canonical(cfun, lb, keep_feasible)
+        else:
+            return cls._interval_to_canonical(cfun, lb, ub, keep_feasible)
+
+    @classmethod
+    def empty(cls, n):
+        """Create an "empty" instance.
+
+        This "empty" instance is required to allow working with unconstrained
+        problems as if they have some constraints.
+        """
+        empty_fun = np.empty(0)
+        empty_jac = np.empty((0, n))
+        empty_hess = sps.csr_matrix((n, n))
+
+        def fun(x):
+            return empty_fun, empty_fun
+
+        def jac(x):
+            return empty_jac, empty_jac
+
+        def hess(x, v_eq, v_ineq):
+            return empty_hess
+
+        return cls(0, 0, fun, jac, hess, np.empty(0, dtype=np.bool_))
+
+    @classmethod
+    def concatenate(cls, canonical_constraints, sparse_jacobian):
+        """Concatenate multiple `CanonicalConstraint` into one.
+
+        `sparse_jacobian` (bool) determines the Jacobian format of the
+        concatenated constraint. Note that items in `canonical_constraints`
+        must have their Jacobians in the same format.
+        """
+        def fun(x):
+            if canonical_constraints:
+                eq_all, ineq_all = zip(
+                        *[c.fun(x) for c in canonical_constraints])
+            else:
+                eq_all, ineq_all = [], []
+
+            return np.hstack(eq_all), np.hstack(ineq_all)
+
+        if sparse_jacobian:
+            vstack = sps.vstack
+        else:
+            vstack = np.vstack
+
+        def jac(x):
+            if canonical_constraints:
+                eq_all, ineq_all = zip(
+                        *[c.jac(x) for c in canonical_constraints])
+            else:
+                eq_all, ineq_all = [], []
+
+            return vstack(eq_all), vstack(ineq_all)
+
+        def hess(x, v_eq, v_ineq):
+            hess_all = []
+            index_eq = 0
+            index_ineq = 0
+            for c in canonical_constraints:
+                vc_eq = v_eq[index_eq:index_eq + c.n_eq]
+                vc_ineq = v_ineq[index_ineq:index_ineq + c.n_ineq]
+                hess_all.append(c.hess(x, vc_eq, vc_ineq))
+                index_eq += c.n_eq
+                index_ineq += c.n_ineq
+
+            def matvec(p):
+                result = np.zeros_like(p)
+                for h in hess_all:
+                    result += h.dot(p)
+                return result
+
+            n = x.shape[0]
+            return sps.linalg.LinearOperator((n, n), matvec, dtype=float)
+
+        n_eq = sum(c.n_eq for c in canonical_constraints)
+        n_ineq = sum(c.n_ineq for c in canonical_constraints)
+        keep_feasible = np.hstack([c.keep_feasible for c in
+                                   canonical_constraints])
+
+        return cls(n_eq, n_ineq, fun, jac, hess, keep_feasible)
+
+    @classmethod
+    def _equal_to_canonical(cls, cfun, value):
+        empty_fun = np.empty(0)
+        n = cfun.n
+
+        n_eq = value.shape[0]
+        n_ineq = 0
+        keep_feasible = np.empty(0, dtype=bool)
+
+        if cfun.sparse_jacobian:
+            empty_jac = sps.csr_matrix((0, n))
+        else:
+            empty_jac = np.empty((0, n))
+
+        def fun(x):
+            return cfun.fun(x) - value, empty_fun
+
+        def jac(x):
+            return cfun.jac(x), empty_jac
+
+        def hess(x, v_eq, v_ineq):
+            return cfun.hess(x, v_eq)
+
+        empty_fun = np.empty(0)
+        n = cfun.n
+        if cfun.sparse_jacobian:
+            empty_jac = sps.csr_matrix((0, n))
+        else:
+            empty_jac = np.empty((0, n))
+
+        return cls(n_eq, n_ineq, fun, jac, hess, keep_feasible)
+
+    @classmethod
+    def _less_to_canonical(cls, cfun, ub, keep_feasible):
+        empty_fun = np.empty(0)
+        n = cfun.n
+        if cfun.sparse_jacobian:
+            empty_jac = sps.csr_matrix((0, n))
+        else:
+            empty_jac = np.empty((0, n))
+
+        finite_ub = ub < np.inf
+        n_eq = 0
+        n_ineq = np.sum(finite_ub)
+
+        if np.all(finite_ub):
+            def fun(x):
+                return empty_fun, cfun.fun(x) - ub
+
+            def jac(x):
+                return empty_jac, cfun.jac(x)
+
+            def hess(x, v_eq, v_ineq):
+                return cfun.hess(x, v_ineq)
+        else:
+            finite_ub = np.nonzero(finite_ub)[0]
+            keep_feasible = keep_feasible[finite_ub]
+            ub = ub[finite_ub]
+
+            def fun(x):
+                return empty_fun, cfun.fun(x)[finite_ub] - ub
+
+            def jac(x):
+                return empty_jac, cfun.jac(x)[finite_ub]
+
+            def hess(x, v_eq, v_ineq):
+                v = np.zeros(cfun.m)
+                v[finite_ub] = v_ineq
+                return cfun.hess(x, v)
+
+        return cls(n_eq, n_ineq, fun, jac, hess, keep_feasible)
+
+    @classmethod
+    def _greater_to_canonical(cls, cfun, lb, keep_feasible):
+        empty_fun = np.empty(0)
+        n = cfun.n
+        if cfun.sparse_jacobian:
+            empty_jac = sps.csr_matrix((0, n))
+        else:
+            empty_jac = np.empty((0, n))
+
+        finite_lb = lb > -np.inf
+        n_eq = 0
+        n_ineq = np.sum(finite_lb)
+
+        if np.all(finite_lb):
+            def fun(x):
+                return empty_fun, lb - cfun.fun(x)
+
+            def jac(x):
+                return empty_jac, -cfun.jac(x)
+
+            def hess(x, v_eq, v_ineq):
+                return cfun.hess(x, -v_ineq)
+        else:
+            finite_lb = np.nonzero(finite_lb)[0]
+            keep_feasible = keep_feasible[finite_lb]
+            lb = lb[finite_lb]
+
+            def fun(x):
+                return empty_fun, lb - cfun.fun(x)[finite_lb]
+
+            def jac(x):
+                return empty_jac, -cfun.jac(x)[finite_lb]
+
+            def hess(x, v_eq, v_ineq):
+                v = np.zeros(cfun.m)
+                v[finite_lb] = -v_ineq
+                return cfun.hess(x, v)
+
+        return cls(n_eq, n_ineq, fun, jac, hess, keep_feasible)
+
+    @classmethod
+    def _interval_to_canonical(cls, cfun, lb, ub, keep_feasible):
+        lb_inf = lb == -np.inf
+        ub_inf = ub == np.inf
+        equal = lb == ub
+        less = lb_inf & ~ub_inf
+        greater = ub_inf & ~lb_inf
+        interval = ~equal & ~lb_inf & ~ub_inf
+
+        equal = np.nonzero(equal)[0]
+        less = np.nonzero(less)[0]
+        greater = np.nonzero(greater)[0]
+        interval = np.nonzero(interval)[0]
+        n_less = less.shape[0]
+        n_greater = greater.shape[0]
+        n_interval = interval.shape[0]
+        n_ineq = n_less + n_greater + 2 * n_interval
+        n_eq = equal.shape[0]
+
+        keep_feasible = np.hstack((keep_feasible[less],
+                                   keep_feasible[greater],
+                                   keep_feasible[interval],
+                                   keep_feasible[interval]))
+
+        def fun(x):
+            f = cfun.fun(x)
+            eq = f[equal] - lb[equal]
+            le = f[less] - ub[less]
+            ge = lb[greater] - f[greater]
+            il = f[interval] - ub[interval]
+            ig = lb[interval] - f[interval]
+            return eq, np.hstack((le, ge, il, ig))
+
+        def jac(x):
+            J = cfun.jac(x)
+            eq = J[equal]
+            le = J[less]
+            ge = -J[greater]
+            il = J[interval]
+            ig = -il
+            if sps.issparse(J):
+                ineq = sps.vstack((le, ge, il, ig))
+            else:
+                ineq = np.vstack((le, ge, il, ig))
+            return eq, ineq
+
+        def hess(x, v_eq, v_ineq):
+            n_start = 0
+            v_l = v_ineq[n_start:n_start + n_less]
+            n_start += n_less
+            v_g = v_ineq[n_start:n_start + n_greater]
+            n_start += n_greater
+            v_il = v_ineq[n_start:n_start + n_interval]
+            n_start += n_interval
+            v_ig = v_ineq[n_start:n_start + n_interval]
+
+            v = np.zeros_like(lb)
+            v[equal] = v_eq
+            v[less] = v_l
+            v[greater] = -v_g
+            v[interval] = v_il - v_ig
+
+            return cfun.hess(x, v)
+
+        return cls(n_eq, n_ineq, fun, jac, hess, keep_feasible)
+
+
+def initial_constraints_as_canonical(n, prepared_constraints, sparse_jacobian):
+    """Convert initial values of the constraints to the canonical format.
+
+    The purpose to avoid one additional call to the constraints at the initial
+    point. It takes saved values in `PreparedConstraint`, modififies and
+    concatenates them to the canonical constraint format.
+    """
+    c_eq = []
+    c_ineq = []
+    J_eq = []
+    J_ineq = []
+
+    for c in prepared_constraints:
+        f = c.fun.f
+        J = c.fun.J
+        lb, ub = c.bounds
+        if np.all(lb == ub):
+            c_eq.append(f - lb)
+            J_eq.append(J)
+        elif np.all(lb == -np.inf):
+            finite_ub = ub < np.inf
+            c_ineq.append(f[finite_ub] - ub[finite_ub])
+            J_ineq.append(J[finite_ub])
+        elif np.all(ub == np.inf):
+            finite_lb = lb > -np.inf
+            c_ineq.append(lb[finite_lb] - f[finite_lb])
+            J_ineq.append(-J[finite_lb])
+        else:
+            lb_inf = lb == -np.inf
+            ub_inf = ub == np.inf
+            equal = lb == ub
+            less = lb_inf & ~ub_inf
+            greater = ub_inf & ~lb_inf
+            interval = ~equal & ~lb_inf & ~ub_inf
+
+            c_eq.append(f[equal] - lb[equal])
+            c_ineq.append(f[less] - ub[less])
+            c_ineq.append(lb[greater] - f[greater])
+            c_ineq.append(f[interval] - ub[interval])
+            c_ineq.append(lb[interval] - f[interval])
+
+            J_eq.append(J[equal])
+            J_ineq.append(J[less])
+            J_ineq.append(-J[greater])
+            J_ineq.append(J[interval])
+            J_ineq.append(-J[interval])
+
+    c_eq = np.hstack(c_eq) if c_eq else np.empty(0)
+    c_ineq = np.hstack(c_ineq) if c_ineq else np.empty(0)
+
+    if sparse_jacobian:
+        vstack = sps.vstack
+        empty = sps.csr_matrix((0, n))
+    else:
+        vstack = np.vstack
+        empty = np.empty((0, n))
+
+    J_eq = vstack(J_eq) if J_eq else empty
+    J_ineq = vstack(J_ineq) if J_ineq else empty
+
+    return c_eq, c_ineq, J_eq, J_ineq

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/equality_constrained_sqp.py

@@ -0,0 +1,217 @@
+"""Byrd-Omojokun Trust-Region SQP method."""
+
+from scipy.sparse import eye as speye
+from .projections import projections
+from .qp_subproblem import modified_dogleg, projected_cg, box_intersections
+import numpy as np
+from numpy.linalg import norm
+
+__all__ = ['equality_constrained_sqp']
+
+
+def default_scaling(x):
+    n, = np.shape(x)
+    return speye(n)
+
+
+def equality_constrained_sqp(fun_and_constr, grad_and_jac, lagr_hess,
+                             x0, fun0, grad0, constr0,
+                             jac0, stop_criteria,
+                             state,
+                             initial_penalty,
+                             initial_trust_radius,
+                             factorization_method,
+                             trust_lb=None,
+                             trust_ub=None,
+                             scaling=default_scaling):
+    """Solve nonlinear equality-constrained problem using trust-region SQP.
+
+    Solve optimization problem:
+
+        minimize fun(x)
+        subject to: constr(x) = 0
+
+    using Byrd-Omojokun Trust-Region SQP method described in [1]_. Several
+    implementation details are based on [2]_ and [3]_, p. 549.
+
+    References
+    ----------
+    .. [1] Lalee, Marucha, Jorge Nocedal, and Todd Plantenga. "On the
+           implementation of an algorithm for large-scale equality
+           constrained optimization." SIAM Journal on
+           Optimization 8.3 (1998): 682-706.
+    .. [2] Byrd, Richard H., Mary E. Hribar, and Jorge Nocedal.
+           "An interior point algorithm for large-scale nonlinear
+           programming." SIAM Journal on Optimization 9.4 (1999): 877-900.
+    .. [3] Nocedal, Jorge, and Stephen J. Wright. "Numerical optimization"
+           Second Edition (2006).
+    """
+    PENALTY_FACTOR = 0.3  # Rho from formula (3.51), reference [2]_, p.891.
+    LARGE_REDUCTION_RATIO = 0.9
+    INTERMEDIARY_REDUCTION_RATIO = 0.3
+    SUFFICIENT_REDUCTION_RATIO = 1e-8  # Eta from reference [2]_, p.892.
+    TRUST_ENLARGEMENT_FACTOR_L = 7.0
+    TRUST_ENLARGEMENT_FACTOR_S = 2.0
+    MAX_TRUST_REDUCTION = 0.5
+    MIN_TRUST_REDUCTION = 0.1
+    SOC_THRESHOLD = 0.1
+    TR_FACTOR = 0.8  # Zeta from formula (3.21), reference [2]_, p.885.
+    BOX_FACTOR = 0.5
+
+    n, = np.shape(x0)  # Number of parameters
+
+    # Set default lower and upper bounds.
+    if trust_lb is None:
+        trust_lb = np.full(n, -np.inf)
+    if trust_ub is None:
+        trust_ub = np.full(n, np.inf)
+
+    # Initial values
+    x = np.copy(x0)
+    trust_radius = initial_trust_radius
+    penalty = initial_penalty
+    # Compute Values
+    f = fun0
+    c = grad0
+    b = constr0
+    A = jac0
+    S = scaling(x)
+    # Get projections
+    Z, LS, Y = projections(A, factorization_method)
+    # Compute least-square lagrange multipliers
+    v = -LS.dot(c)
+    # Compute Hessian
+    H = lagr_hess(x, v)
+
+    # Update state parameters
+    optimality = norm(c + A.T.dot(v), np.inf)
+    constr_violation = norm(b, np.inf) if len(b) > 0 else 0
+    cg_info = {'niter': 0, 'stop_cond': 0,
+               'hits_boundary': False}
+
+    last_iteration_failed = False
+    while not stop_criteria(state, x, last_iteration_failed,
+                            optimality, constr_violation,
+                            trust_radius, penalty, cg_info):
+        # Normal Step - `dn`
+        # minimize 1/2*||A dn + b||^2
+        # subject to:
+        # ||dn|| <= TR_FACTOR * trust_radius
+        # BOX_FACTOR * lb <= dn <= BOX_FACTOR * ub.
+        dn = modified_dogleg(A, Y, b,
+                             TR_FACTOR*trust_radius,
+                             BOX_FACTOR*trust_lb,
+                             BOX_FACTOR*trust_ub)
+
+        # Tangential Step - `dt`
+        # Solve the QP problem:
+        # minimize 1/2 dt.T H dt + dt.T (H dn + c)
+        # subject to:
+        # A dt = 0
+        # ||dt|| <= sqrt(trust_radius**2 - ||dn||**2)
+        # lb - dn <= dt <= ub - dn
+        c_t = H.dot(dn) + c
+        b_t = np.zeros_like(b)
+        trust_radius_t = np.sqrt(trust_radius**2 - np.linalg.norm(dn)**2)
+        lb_t = trust_lb - dn
+        ub_t = trust_ub - dn
+        dt, cg_info = projected_cg(H, c_t, Z, Y, b_t,
+                                   trust_radius_t,
+                                   lb_t, ub_t)
+
+        # Compute update (normal + tangential steps).
+        d = dn + dt
+
+        # Compute second order model: 1/2 d H d + c.T d + f.
+        quadratic_model = 1/2*(H.dot(d)).dot(d) + c.T.dot(d)
+        # Compute linearized constraint: l = A d + b.
+        linearized_constr = A.dot(d)+b
+        # Compute new penalty parameter according to formula (3.52),
+        # reference [2]_, p.891.
+        vpred = norm(b) - norm(linearized_constr)
+        # Guarantee `vpred` always positive,
+        # regardless of roundoff errors.
+        vpred = max(1e-16, vpred)
+        previous_penalty = penalty
+        if quadratic_model > 0:
+            new_penalty = quadratic_model / ((1-PENALTY_FACTOR)*vpred)
+            penalty = max(penalty, new_penalty)
+        # Compute predicted reduction according to formula (3.52),
+        # reference [2]_, p.891.
+        predicted_reduction = -quadratic_model + penalty*vpred
+
+        # Compute merit function at current point
+        merit_function = f + penalty*norm(b)
+        # Evaluate function and constraints at trial point
+        x_next = x + S.dot(d)
+        f_next, b_next = fun_and_constr(x_next)
+        # Compute merit function at trial point
+        merit_function_next = f_next + penalty*norm(b_next)
+        # Compute actual reduction according to formula (3.54),
+        # reference [2]_, p.892.
+        actual_reduction = merit_function - merit_function_next
+        # Compute reduction ratio
+        reduction_ratio = actual_reduction / predicted_reduction
+
+        # Second order correction (SOC), reference [2]_, p.892.
+        if reduction_ratio < SUFFICIENT_REDUCTION_RATIO and \
+           norm(dn) <= SOC_THRESHOLD * norm(dt):
+            # Compute second order correction
+            y = -Y.dot(b_next)
+            # Make sure increment is inside box constraints
+            _, t, intersect = box_intersections(d, y, trust_lb, trust_ub)
+            # Compute tentative point
+            x_soc = x + S.dot(d + t*y)
+            f_soc, b_soc = fun_and_constr(x_soc)
+            # Recompute actual reduction
+            merit_function_soc = f_soc + penalty*norm(b_soc)
+            actual_reduction_soc = merit_function - merit_function_soc
+            # Recompute reduction ratio
+            reduction_ratio_soc = actual_reduction_soc / predicted_reduction
+            if intersect and reduction_ratio_soc >= SUFFICIENT_REDUCTION_RATIO:
+                x_next = x_soc
+                f_next = f_soc
+                b_next = b_soc
+                reduction_ratio = reduction_ratio_soc
+
+        # Readjust trust region step, formula (3.55), reference [2]_, p.892.
+        if reduction_ratio >= LARGE_REDUCTION_RATIO:
+            trust_radius = max(TRUST_ENLARGEMENT_FACTOR_L * norm(d),
+                               trust_radius)
+        elif reduction_ratio >= INTERMEDIARY_REDUCTION_RATIO:
+            trust_radius = max(TRUST_ENLARGEMENT_FACTOR_S * norm(d),
+                               trust_radius)
+        # Reduce trust region step, according to reference [3]_, p.696.
+        elif reduction_ratio < SUFFICIENT_REDUCTION_RATIO:
+            trust_reduction = ((1-SUFFICIENT_REDUCTION_RATIO) /
+                               (1-reduction_ratio))
+            new_trust_radius = trust_reduction * norm(d)
+            if new_trust_radius >= MAX_TRUST_REDUCTION * trust_radius:
+                trust_radius *= MAX_TRUST_REDUCTION
+            elif new_trust_radius >= MIN_TRUST_REDUCTION * trust_radius:
+                trust_radius = new_trust_radius
+            else:
+                trust_radius *= MIN_TRUST_REDUCTION
+
+        # Update iteration
+        if reduction_ratio >= SUFFICIENT_REDUCTION_RATIO:
+            x = x_next
+            f, b = f_next, b_next
+            c, A = grad_and_jac(x)
+            S = scaling(x)
+            # Get projections
+            Z, LS, Y = projections(A, factorization_method)
+            # Compute least-square lagrange multipliers
+            v = -LS.dot(c)
+            # Compute Hessian
+            H = lagr_hess(x, v)
+            # Set Flag
+            last_iteration_failed = False
+            # Otimality values
+            optimality = norm(c + A.T.dot(v), np.inf)
+            constr_violation = norm(b, np.inf) if len(b) > 0 else 0
+        else:
+            penalty = previous_penalty
+            last_iteration_failed = True
+
+    return x, state

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/minimize_trustregion_constr.py

@@ -0,0 +1,564 @@
+import time
+import numpy as np
+from scipy.sparse.linalg import LinearOperator
+from .._differentiable_functions import VectorFunction
+from .._constraints import (
+    NonlinearConstraint, LinearConstraint, PreparedConstraint, Bounds, strict_bounds)
+from .._hessian_update_strategy import BFGS
+from .._optimize import OptimizeResult
+from .._differentiable_functions import ScalarFunction
+from .equality_constrained_sqp import equality_constrained_sqp
+from .canonical_constraint import (CanonicalConstraint,
+                                   initial_constraints_as_canonical)
+from .tr_interior_point import tr_interior_point
+from .report import BasicReport, SQPReport, IPReport
+
+
+TERMINATION_MESSAGES = {
+    0: "The maximum number of function evaluations is exceeded.",
+    1: "`gtol` termination condition is satisfied.",
+    2: "`xtol` termination condition is satisfied.",
+    3: "`callback` function requested termination."
+}
+
+
+class HessianLinearOperator:
+    """Build LinearOperator from hessp"""
+    def __init__(self, hessp, n):
+        self.hessp = hessp
+        self.n = n
+
+    def __call__(self, x, *args):
+        def matvec(p):
+            return self.hessp(x, p, *args)
+
+        return LinearOperator((self.n, self.n), matvec=matvec)
+
+
+class LagrangianHessian:
+    """The Hessian of the Lagrangian as LinearOperator.
+
+    The Lagrangian is computed as the objective function plus all the
+    constraints multiplied with some numbers (Lagrange multipliers).
+    """
+    def __init__(self, n, objective_hess, constraints_hess):
+        self.n = n
+        self.objective_hess = objective_hess
+        self.constraints_hess = constraints_hess
+
+    def __call__(self, x, v_eq=np.empty(0), v_ineq=np.empty(0)):
+        H_objective = self.objective_hess(x)
+        H_constraints = self.constraints_hess(x, v_eq, v_ineq)
+
+        def matvec(p):
+            return H_objective.dot(p) + H_constraints.dot(p)
+
+        return LinearOperator((self.n, self.n), matvec)
+
+
+def update_state_sqp(state, x, last_iteration_failed, objective, prepared_constraints,
+                     start_time, tr_radius, constr_penalty, cg_info):
+    state.nit += 1
+    state.nfev = objective.nfev
+    state.njev = objective.ngev
+    state.nhev = objective.nhev
+    state.constr_nfev = [c.fun.nfev if isinstance(c.fun, VectorFunction) else 0
+                         for c in prepared_constraints]
+    state.constr_njev = [c.fun.njev if isinstance(c.fun, VectorFunction) else 0
+                         for c in prepared_constraints]
+    state.constr_nhev = [c.fun.nhev if isinstance(c.fun, VectorFunction) else 0
+                         for c in prepared_constraints]
+
+    if not last_iteration_failed:
+        state.x = x
+        state.fun = objective.f
+        state.grad = objective.g
+        state.v = [c.fun.v for c in prepared_constraints]
+        state.constr = [c.fun.f for c in prepared_constraints]
+        state.jac = [c.fun.J for c in prepared_constraints]
+        # Compute Lagrangian Gradient
+        state.lagrangian_grad = np.copy(state.grad)
+        for c in prepared_constraints:
+            state.lagrangian_grad += c.fun.J.T.dot(c.fun.v)
+        state.optimality = np.linalg.norm(state.lagrangian_grad, np.inf)
+        # Compute maximum constraint violation
+        state.constr_violation = 0
+        for i in range(len(prepared_constraints)):
+            lb, ub = prepared_constraints[i].bounds
+            c = state.constr[i]
+            state.constr_violation = np.max([state.constr_violation,
+                                             np.max(lb - c),
+                                             np.max(c - ub)])
+
+    state.execution_time = time.time() - start_time
+    state.tr_radius = tr_radius
+    state.constr_penalty = constr_penalty
+    state.cg_niter += cg_info["niter"]
+    state.cg_stop_cond = cg_info["stop_cond"]
+
+    return state
+
+
+def update_state_ip(state, x, last_iteration_failed, objective,
+                    prepared_constraints, start_time,
+                    tr_radius, constr_penalty, cg_info,
+                    barrier_parameter, barrier_tolerance):
+    state = update_state_sqp(state, x, last_iteration_failed, objective,
+                             prepared_constraints, start_time, tr_radius,
+                             constr_penalty, cg_info)
+    state.barrier_parameter = barrier_parameter
+    state.barrier_tolerance = barrier_tolerance
+    return state
+
+
+def _minimize_trustregion_constr(fun, x0, args, grad,
+                                 hess, hessp, bounds, constraints,
+                                 xtol=1e-8, gtol=1e-8,
+                                 barrier_tol=1e-8,
+                                 sparse_jacobian=None,
+                                 callback=None, maxiter=1000,
+                                 verbose=0, finite_diff_rel_step=None,
+                                 initial_constr_penalty=1.0, initial_tr_radius=1.0,
+                                 initial_barrier_parameter=0.1,
+                                 initial_barrier_tolerance=0.1,
+                                 factorization_method=None,
+                                 disp=False):
+    """Minimize a scalar function subject to constraints.
+
+    Parameters
+    ----------
+    gtol : float, optional
+        Tolerance for termination by the norm of the Lagrangian gradient.
+        The algorithm will terminate when both the infinity norm (i.e., max
+        abs value) of the Lagrangian gradient and the constraint violation
+        are smaller than ``gtol``. Default is 1e-8.
+    xtol : float, optional
+        Tolerance for termination by the change of the independent variable.
+        The algorithm will terminate when ``tr_radius < xtol``, where
+        ``tr_radius`` is the radius of the trust region used in the algorithm.
+        Default is 1e-8.
+    barrier_tol : float, optional
+        Threshold on the barrier parameter for the algorithm termination.
+        When inequality constraints are present, the algorithm will terminate
+        only when the barrier parameter is less than `barrier_tol`.
+        Default is 1e-8.
+    sparse_jacobian : {bool, None}, optional
+        Determines how to represent Jacobians of the constraints. If bool,
+        then Jacobians of all the constraints will be converted to the
+        corresponding format. If None (default), then Jacobians won't be
+        converted, but the algorithm can proceed only if they all have the
+        same format.
+    initial_tr_radius: float, optional
+        Initial trust radius. The trust radius gives the maximum distance
+        between solution points in consecutive iterations. It reflects the
+        trust the algorithm puts in the local approximation of the optimization
+        problem. For an accurate local approximation the trust-region should be
+        large and for an  approximation valid only close to the current point it
+        should be a small one. The trust radius is automatically updated throughout
+        the optimization process, with ``initial_tr_radius`` being its initial value.
+        Default is 1 (recommended in [1]_, p. 19).
+    initial_constr_penalty : float, optional
+        Initial constraints penalty parameter. The penalty parameter is used for
+        balancing the requirements of decreasing the objective function
+        and satisfying the constraints. It is used for defining the merit function:
+        ``merit_function(x) = fun(x) + constr_penalty * constr_norm_l2(x)``,
+        where ``constr_norm_l2(x)`` is the l2 norm of a vector containing all
+        the constraints. The merit function is used for accepting or rejecting
+        trial points and ``constr_penalty`` weights the two conflicting goals
+        of reducing objective function and constraints. The penalty is automatically
+        updated throughout the optimization  process, with
+        ``initial_constr_penalty`` being its  initial value. Default is 1
+        (recommended in [1]_, p 19).
+    initial_barrier_parameter, initial_barrier_tolerance: float, optional
+        Initial barrier parameter and initial tolerance for the barrier subproblem.
+        Both are used only when inequality constraints are present. For dealing with
+        optimization problems ``min_x f(x)`` subject to inequality constraints
+        ``c(x) <= 0`` the algorithm introduces slack variables, solving the problem
+        ``min_(x,s) f(x) + barrier_parameter*sum(ln(s))`` subject to the equality
+        constraints  ``c(x) + s = 0`` instead of the original problem. This subproblem
+        is solved for decreasing values of ``barrier_parameter`` and with decreasing
+        tolerances for the termination, starting with ``initial_barrier_parameter``
+        for the barrier parameter and ``initial_barrier_tolerance`` for the
+        barrier tolerance. Default is 0.1 for both values (recommended in [1]_ p. 19).
+        Also note that ``barrier_parameter`` and ``barrier_tolerance`` are updated
+        with the same prefactor.
+    factorization_method : string or None, optional
+        Method to factorize the Jacobian of the constraints. Use None (default)
+        for the auto selection or one of:
+
+            - 'NormalEquation' (requires scikit-sparse)
+            - 'AugmentedSystem'
+            - 'QRFactorization'
+            - 'SVDFactorization'
+
+        The methods 'NormalEquation' and 'AugmentedSystem' can be used only
+        with sparse constraints. The projections required by the algorithm
+        will be computed using, respectively, the normal equation  and the
+        augmented system approaches explained in [1]_. 'NormalEquation'
+        computes the Cholesky factorization of ``A A.T`` and 'AugmentedSystem'
+        performs the LU factorization of an augmented system. They usually
+        provide similar results. 'AugmentedSystem' is used by default for
+        sparse matrices.
+
+        The methods 'QRFactorization' and 'SVDFactorization' can be used
+        only with dense constraints. They compute the required projections
+        using, respectively, QR and SVD factorizations. The 'SVDFactorization'
+        method can cope with Jacobian matrices with deficient row rank and will
+        be used whenever other factorization methods fail (which may imply the
+        conversion of sparse matrices to a dense format when required).
+        By default, 'QRFactorization' is used for dense matrices.
+    finite_diff_rel_step : None or array_like, optional
+        Relative step size for the finite difference approximation.
+    maxiter : int, optional
+        Maximum number of algorithm iterations. Default is 1000.
+    verbose : {0, 1, 2}, optional
+        Level of algorithm's verbosity:
+
+            * 0 (default) : work silently.
+            * 1 : display a termination report.
+            * 2 : display progress during iterations.
+            * 3 : display progress during iterations (more complete report).
+
+    disp : bool, optional
+        If True (default), then `verbose` will be set to 1 if it was 0.
+
+    Returns
+    -------
+    `OptimizeResult` with the fields documented below. Note the following:
+
+        1. All values corresponding to the constraints are ordered as they
+           were passed to the solver. And values corresponding to `bounds`
+           constraints are put *after* other constraints.
+        2. All numbers of function, Jacobian or Hessian evaluations correspond
+           to numbers of actual Python function calls. It means, for example,
+           that if a Jacobian is estimated by finite differences, then the
+           number of Jacobian evaluations will be zero and the number of
+           function evaluations will be incremented by all calls during the
+           finite difference estimation.
+
+    x : ndarray, shape (n,)
+        Solution found.
+    optimality : float
+        Infinity norm of the Lagrangian gradient at the solution.
+    constr_violation : float
+        Maximum constraint violation at the solution.
+    fun : float
+        Objective function at the solution.
+    grad : ndarray, shape (n,)
+        Gradient of the objective function at the solution.
+    lagrangian_grad : ndarray, shape (n,)
+        Gradient of the Lagrangian function at the solution.
+    nit : int
+        Total number of iterations.
+    nfev : integer
+        Number of the objective function evaluations.
+    njev : integer
+        Number of the objective function gradient evaluations.
+    nhev : integer
+        Number of the objective function Hessian evaluations.
+    cg_niter : int
+        Total number of the conjugate gradient method iterations.
+    method : {'equality_constrained_sqp', 'tr_interior_point'}
+        Optimization method used.
+    constr : list of ndarray
+        List of constraint values at the solution.
+    jac : list of {ndarray, sparse matrix}
+        List of the Jacobian matrices of the constraints at the solution.
+    v : list of ndarray
+        List of the Lagrange multipliers for the constraints at the solution.
+        For an inequality constraint a positive multiplier means that the upper
+        bound is active, a negative multiplier means that the lower bound is
+        active and if a multiplier is zero it means the constraint is not
+        active.
+    constr_nfev : list of int
+        Number of constraint evaluations for each of the constraints.
+    constr_njev : list of int
+        Number of Jacobian matrix evaluations for each of the constraints.
+    constr_nhev : list of int
+        Number of Hessian evaluations for each of the constraints.
+    tr_radius : float
+        Radius of the trust region at the last iteration.
+    constr_penalty : float
+        Penalty parameter at the last iteration, see `initial_constr_penalty`.
+    barrier_tolerance : float
+        Tolerance for the barrier subproblem at the last iteration.
+        Only for problems with inequality constraints.
+    barrier_parameter : float
+        Barrier parameter at the last iteration. Only for problems
+        with inequality constraints.
+    execution_time : float
+        Total execution time.
+    message : str
+        Termination message.
+    status : {0, 1, 2, 3}
+        Termination status:
+
+            * 0 : The maximum number of function evaluations is exceeded.
+            * 1 : `gtol` termination condition is satisfied.
+            * 2 : `xtol` termination condition is satisfied.
+            * 3 : `callback` function requested termination.
+
+    cg_stop_cond : int
+        Reason for CG subproblem termination at the last iteration:
+
+            * 0 : CG subproblem not evaluated.
+            * 1 : Iteration limit was reached.
+            * 2 : Reached the trust-region boundary.
+            * 3 : Negative curvature detected.
+            * 4 : Tolerance was satisfied.
+
+    References
+    ----------
+    .. [1] Conn, A. R., Gould, N. I., & Toint, P. L.
+           Trust region methods. 2000. Siam. pp. 19.
+    """
+    x0 = np.atleast_1d(x0).astype(float)
+    n_vars = np.size(x0)
+    if hess is None:
+        if callable(hessp):
+            hess = HessianLinearOperator(hessp, n_vars)
+        else:
+            hess = BFGS()
+    if disp and verbose == 0:
+        verbose = 1
+
+    if bounds is not None:
+        modified_lb = np.nextafter(bounds.lb, -np.inf, where=bounds.lb > -np.inf)
+        modified_ub = np.nextafter(bounds.ub, np.inf, where=bounds.ub < np.inf)
+        modified_lb = np.where(np.isfinite(bounds.lb), modified_lb, bounds.lb)
+        modified_ub = np.where(np.isfinite(bounds.ub), modified_ub, bounds.ub)
+        bounds = Bounds(modified_lb, modified_ub, keep_feasible=bounds.keep_feasible)
+        finite_diff_bounds = strict_bounds(bounds.lb, bounds.ub,
+                                           bounds.keep_feasible, n_vars)
+    else:
+        finite_diff_bounds = (-np.inf, np.inf)
+
+    # Define Objective Function
+    objective = ScalarFunction(fun, x0, args, grad, hess,
+                               finite_diff_rel_step, finite_diff_bounds)
+
+    # Put constraints in list format when needed.
+    if isinstance(constraints, (NonlinearConstraint, LinearConstraint)):
+        constraints = [constraints]
+
+    # Prepare constraints.
+    prepared_constraints = [
+        PreparedConstraint(c, x0, sparse_jacobian, finite_diff_bounds)
+        for c in constraints]
+
+    # Check that all constraints are either sparse or dense.
+    n_sparse = sum(c.fun.sparse_jacobian for c in prepared_constraints)
+    if 0 < n_sparse < len(prepared_constraints):
+        raise ValueError("All constraints must have the same kind of the "
+                         "Jacobian --- either all sparse or all dense. "
+                         "You can set the sparsity globally by setting "
+                         "`sparse_jacobian` to either True of False.")
+    if prepared_constraints:
+        sparse_jacobian = n_sparse > 0
+
+    if bounds is not None:
+        if sparse_jacobian is None:
+            sparse_jacobian = True
+        prepared_constraints.append(PreparedConstraint(bounds, x0,
+                                                       sparse_jacobian))
+
+    # Concatenate initial constraints to the canonical form.
+    c_eq0, c_ineq0, J_eq0, J_ineq0 = initial_constraints_as_canonical(
+        n_vars, prepared_constraints, sparse_jacobian)
+
+    # Prepare all canonical constraints and concatenate it into one.
+    canonical_all = [CanonicalConstraint.from_PreparedConstraint(c)
+                     for c in prepared_constraints]
+
+    if len(canonical_all) == 0:
+        canonical = CanonicalConstraint.empty(n_vars)
+    elif len(canonical_all) == 1:
+        canonical = canonical_all[0]
+    else:
+        canonical = CanonicalConstraint.concatenate(canonical_all,
+                                                    sparse_jacobian)
+
+    # Generate the Hessian of the Lagrangian.
+    lagrangian_hess = LagrangianHessian(n_vars, objective.hess, canonical.hess)
+
+    # Choose appropriate method
+    if canonical.n_ineq == 0:
+        method = 'equality_constrained_sqp'
+    else:
+        method = 'tr_interior_point'
+
+    # Construct OptimizeResult
+    state = OptimizeResult(
+        nit=0, nfev=0, njev=0, nhev=0,
+        cg_niter=0, cg_stop_cond=0,
+        fun=objective.f, grad=objective.g,
+        lagrangian_grad=np.copy(objective.g),
+        constr=[c.fun.f for c in prepared_constraints],
+        jac=[c.fun.J for c in prepared_constraints],
+        constr_nfev=[0 for c in prepared_constraints],
+        constr_njev=[0 for c in prepared_constraints],
+        constr_nhev=[0 for c in prepared_constraints],
+        v=[c.fun.v for c in prepared_constraints],
+        method=method)
+
+    # Start counting
+    start_time = time.time()
+
+    # Define stop criteria
+    if method == 'equality_constrained_sqp':
+        def stop_criteria(state, x, last_iteration_failed,
+                          optimality, constr_violation,
+                          tr_radius, constr_penalty, cg_info):
+            state = update_state_sqp(state, x, last_iteration_failed,
+                                     objective, prepared_constraints,
+                                     start_time, tr_radius, constr_penalty,
+                                     cg_info)
+            if verbose == 2:
+                BasicReport.print_iteration(state.nit,
+                                            state.nfev,
+                                            state.cg_niter,
+                                            state.fun,
+                                            state.tr_radius,
+                                            state.optimality,
+                                            state.constr_violation)
+            elif verbose > 2:
+                SQPReport.print_iteration(state.nit,
+                                          state.nfev,
+                                          state.cg_niter,
+                                          state.fun,
+                                          state.tr_radius,
+                                          state.optimality,
+                                          state.constr_violation,
+                                          state.constr_penalty,
+                                          state.cg_stop_cond)
+            state.status = None
+            state.niter = state.nit  # Alias for callback (backward-compatibility)
+            if callback is not None:
+                callback_stop = False
+                try:
+                    callback_stop = callback(state)
+                except StopIteration:
+                    callback_stop = True
+                if callback_stop:
+                    state.status = 3
+                    return True
+            if state.optimality < gtol and state.constr_violation < gtol:
+                state.status = 1
+            elif state.tr_radius < xtol:
+                state.status = 2
+            elif state.nit >= maxiter:
+                state.status = 0
+            return state.status in (0, 1, 2, 3)
+    elif method == 'tr_interior_point':
+        def stop_criteria(state, x, last_iteration_failed, tr_radius,
+                          constr_penalty, cg_info, barrier_parameter,
+                          barrier_tolerance):
+            state = update_state_ip(state, x, last_iteration_failed,
+                                    objective, prepared_constraints,
+                                    start_time, tr_radius, constr_penalty,
+                                    cg_info, barrier_parameter, barrier_tolerance)
+            if verbose == 2:
+                BasicReport.print_iteration(state.nit,
+                                            state.nfev,
+                                            state.cg_niter,
+                                            state.fun,
+                                            state.tr_radius,
+                                            state.optimality,
+                                            state.constr_violation)
+            elif verbose > 2:
+                IPReport.print_iteration(state.nit,
+                                         state.nfev,
+                                         state.cg_niter,
+                                         state.fun,
+                                         state.tr_radius,
+                                         state.optimality,
+                                         state.constr_violation,
+                                         state.constr_penalty,
+                                         state.barrier_parameter,
+                                         state.cg_stop_cond)
+            state.status = None
+            state.niter = state.nit  # Alias for callback (backward compatibility)
+            if callback is not None:
+                callback_stop = False
+                try:
+                    callback_stop = callback(state)
+                except StopIteration:
+                    callback_stop = True
+                if callback_stop:
+                    state.status = 3
+                    return True
+            if state.optimality < gtol and state.constr_violation < gtol:
+                state.status = 1
+            elif (state.tr_radius < xtol
+                  and state.barrier_parameter < barrier_tol):
+                state.status = 2
+            elif state.nit >= maxiter:
+                state.status = 0
+            return state.status in (0, 1, 2, 3)
+
+    if verbose == 2:
+        BasicReport.print_header()
+    elif verbose > 2:
+        if method == 'equality_constrained_sqp':
+            SQPReport.print_header()
+        elif method == 'tr_interior_point':
+            IPReport.print_header()
+
+    # Call inferior function to do the optimization
+    if method == 'equality_constrained_sqp':
+        def fun_and_constr(x):
+            f = objective.fun(x)
+            c_eq, _ = canonical.fun(x)
+            return f, c_eq
+
+        def grad_and_jac(x):
+            g = objective.grad(x)
+            J_eq, _ = canonical.jac(x)
+            return g, J_eq
+
+        _, result = equality_constrained_sqp(
+            fun_and_constr, grad_and_jac, lagrangian_hess,
+            x0, objective.f, objective.g,
+            c_eq0, J_eq0,
+            stop_criteria, state,
+            initial_constr_penalty, initial_tr_radius,
+            factorization_method)
+
+    elif method == 'tr_interior_point':
+        _, result = tr_interior_point(
+            objective.fun, objective.grad, lagrangian_hess,
+            n_vars, canonical.n_ineq, canonical.n_eq,
+            canonical.fun, canonical.jac,
+            x0, objective.f, objective.g,
+            c_ineq0, J_ineq0, c_eq0, J_eq0,
+            stop_criteria,
+            canonical.keep_feasible,
+            xtol, state, initial_barrier_parameter,
+            initial_barrier_tolerance,
+            initial_constr_penalty, initial_tr_radius,
+            factorization_method)
+
+    # Status 3 occurs when the callback function requests termination,
+    # this is assumed to not be a success.
+    result.success = True if result.status in (1, 2) else False
+    result.message = TERMINATION_MESSAGES[result.status]
+
+    # Alias (for backward compatibility with 1.1.0)
+    result.niter = result.nit
+
+    if verbose == 2:
+        BasicReport.print_footer()
+    elif verbose > 2:
+        if method == 'equality_constrained_sqp':
+            SQPReport.print_footer()
+        elif method == 'tr_interior_point':
+            IPReport.print_footer()
+    if verbose >= 1:
+        print(result.message)
+        print("Number of iterations: {}, function evaluations: {}, "
+              "CG iterations: {}, optimality: {:.2e}, "
+              "constraint violation: {:.2e}, execution time: {:4.2} s."
+              .format(result.nit, result.nfev, result.cg_niter,
+                      result.optimality, result.constr_violation,
+                      result.execution_time))
+    return result

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/projections.py

@@ -0,0 +1,407 @@
+"""Basic linear factorizations needed by the solver."""
+
+from scipy.sparse import (bmat, csc_matrix, eye, issparse)
+from scipy.sparse.linalg import LinearOperator
+import scipy.linalg
+import scipy.sparse.linalg
+try:
+    from sksparse.cholmod import cholesky_AAt
+    sksparse_available = True
+except ImportError:
+    import warnings
+    sksparse_available = False
+import numpy as np
+from warnings import warn
+
+__all__ = [
+    'orthogonality',
+    'projections',
+]
+
+
+def orthogonality(A, g):
+    """Measure orthogonality between a vector and the null space of a matrix.
+
+    Compute a measure of orthogonality between the null space
+    of the (possibly sparse) matrix ``A`` and a given vector ``g``.
+
+    The formula is a simplified (and cheaper) version of formula (3.13)
+    from [1]_.
+    ``orth =  norm(A g, ord=2)/(norm(A, ord='fro')*norm(g, ord=2))``.
+
+    References
+    ----------
+    .. [1] Gould, Nicholas IM, Mary E. Hribar, and Jorge Nocedal.
+           "On the solution of equality constrained quadratic
+            programming problems arising in optimization."
+            SIAM Journal on Scientific Computing 23.4 (2001): 1376-1395.
+    """
+    # Compute vector norms
+    norm_g = np.linalg.norm(g)
+    # Compute Froebnius norm of the matrix A
+    if issparse(A):
+        norm_A = scipy.sparse.linalg.norm(A, ord='fro')
+    else:
+        norm_A = np.linalg.norm(A, ord='fro')
+
+    # Check if norms are zero
+    if norm_g == 0 or norm_A == 0:
+        return 0
+
+    norm_A_g = np.linalg.norm(A.dot(g))
+    # Orthogonality measure
+    orth = norm_A_g / (norm_A*norm_g)
+    return orth
+
+
+def normal_equation_projections(A, m, n, orth_tol, max_refin, tol):
+    """Return linear operators for matrix A using ``NormalEquation`` approach.
+    """
+    # Cholesky factorization
+    factor = cholesky_AAt(A)
+
+    # z = x - A.T inv(A A.T) A x
+    def null_space(x):
+        v = factor(A.dot(x))
+        z = x - A.T.dot(v)
+
+        # Iterative refinement to improve roundoff
+        # errors described in [2]_, algorithm 5.1.
+        k = 0
+        while orthogonality(A, z) > orth_tol:
+            if k >= max_refin:
+                break
+            # z_next = z - A.T inv(A A.T) A z
+            v = factor(A.dot(z))
+            z = z - A.T.dot(v)
+            k += 1
+
+        return z
+
+    # z = inv(A A.T) A x
+    def least_squares(x):
+        return factor(A.dot(x))
+
+    # z = A.T inv(A A.T) x
+    def row_space(x):
+        return A.T.dot(factor(x))
+
+    return null_space, least_squares, row_space
+
+
+def augmented_system_projections(A, m, n, orth_tol, max_refin, tol):
+    """Return linear operators for matrix A - ``AugmentedSystem``."""
+    # Form augmented system
+    K = csc_matrix(bmat([[eye(n), A.T], [A, None]]))
+    # LU factorization
+    # TODO: Use a symmetric indefinite factorization
+    #       to solve the system twice as fast (because
+    #       of the symmetry).
+    try:
+        solve = scipy.sparse.linalg.factorized(K)
+    except RuntimeError:
+        warn("Singular Jacobian matrix. Using dense SVD decomposition to "
+             "perform the factorizations.",
+             stacklevel=3)
+        return svd_factorization_projections(A.toarray(),
+                                             m, n, orth_tol,
+                                             max_refin, tol)
+
+    # z = x - A.T inv(A A.T) A x
+    # is computed solving the extended system:
+    # [I A.T] * [ z ] = [x]
+    # [A  O ]   [aux]   [0]
+    def null_space(x):
+        # v = [x]
+        #     [0]
+        v = np.hstack([x, np.zeros(m)])
+        # lu_sol = [ z ]
+        #          [aux]
+        lu_sol = solve(v)
+        z = lu_sol[:n]
+
+        # Iterative refinement to improve roundoff
+        # errors described in [2]_, algorithm 5.2.
+        k = 0
+        while orthogonality(A, z) > orth_tol:
+            if k >= max_refin:
+                break
+            # new_v = [x] - [I A.T] * [ z ]
+            #         [0]   [A  O ]   [aux]
+            new_v = v - K.dot(lu_sol)
+            # [I A.T] * [delta  z ] = new_v
+            # [A  O ]   [delta aux]
+            lu_update = solve(new_v)
+            #  [ z ] += [delta  z ]
+            #  [aux]    [delta aux]
+            lu_sol += lu_update
+            z = lu_sol[:n]
+            k += 1
+
+        # return z = x - A.T inv(A A.T) A x
+        return z
+
+    # z = inv(A A.T) A x
+    # is computed solving the extended system:
+    # [I A.T] * [aux] = [x]
+    # [A  O ]   [ z ]   [0]
+    def least_squares(x):
+        # v = [x]
+        #     [0]
+        v = np.hstack([x, np.zeros(m)])
+        # lu_sol = [aux]
+        #          [ z ]
+        lu_sol = solve(v)
+        # return z = inv(A A.T) A x
+        return lu_sol[n:m+n]
+
+    # z = A.T inv(A A.T) x
+    # is computed solving the extended system:
+    # [I A.T] * [ z ] = [0]
+    # [A  O ]   [aux]   [x]
+    def row_space(x):
+        # v = [0]
+        #     [x]
+        v = np.hstack([np.zeros(n), x])
+        # lu_sol = [ z ]
+        #          [aux]
+        lu_sol = solve(v)
+        # return z = A.T inv(A A.T) x
+        return lu_sol[:n]
+
+    return null_space, least_squares, row_space
+
+
+def qr_factorization_projections(A, m, n, orth_tol, max_refin, tol):
+    """Return linear operators for matrix A using ``QRFactorization`` approach.
+    """
+    # QRFactorization
+    Q, R, P = scipy.linalg.qr(A.T, pivoting=True, mode='economic')
+
+    if np.linalg.norm(R[-1, :], np.inf) < tol:
+        warn('Singular Jacobian matrix. Using SVD decomposition to ' +
+             'perform the factorizations.',
+             stacklevel=3)
+        return svd_factorization_projections(A, m, n,
+                                             orth_tol,
+                                             max_refin,
+                                             tol)
+
+    # z = x - A.T inv(A A.T) A x
+    def null_space(x):
+        # v = P inv(R) Q.T x
+        aux1 = Q.T.dot(x)
+        aux2 = scipy.linalg.solve_triangular(R, aux1, lower=False)
+        v = np.zeros(m)
+        v[P] = aux2
+        z = x - A.T.dot(v)
+
+        # Iterative refinement to improve roundoff
+        # errors described in [2]_, algorithm 5.1.
+        k = 0
+        while orthogonality(A, z) > orth_tol:
+            if k >= max_refin:
+                break
+            # v = P inv(R) Q.T x
+            aux1 = Q.T.dot(z)
+            aux2 = scipy.linalg.solve_triangular(R, aux1, lower=False)
+            v[P] = aux2
+            # z_next = z - A.T v
+            z = z - A.T.dot(v)
+            k += 1
+
+        return z
+
+    # z = inv(A A.T) A x
+    def least_squares(x):
+        # z = P inv(R) Q.T x
+        aux1 = Q.T.dot(x)
+        aux2 = scipy.linalg.solve_triangular(R, aux1, lower=False)
+        z = np.zeros(m)
+        z[P] = aux2
+        return z
+
+    # z = A.T inv(A A.T) x
+    def row_space(x):
+        # z = Q inv(R.T) P.T x
+        aux1 = x[P]
+        aux2 = scipy.linalg.solve_triangular(R, aux1,
+                                             lower=False,
+                                             trans='T')
+        z = Q.dot(aux2)
+        return z
+
+    return null_space, least_squares, row_space
+
+
+def svd_factorization_projections(A, m, n, orth_tol, max_refin, tol):
+    """Return linear operators for matrix A using ``SVDFactorization`` approach.
+    """
+    # SVD Factorization
+    U, s, Vt = scipy.linalg.svd(A, full_matrices=False)
+
+    # Remove dimensions related with very small singular values
+    U = U[:, s > tol]
+    Vt = Vt[s > tol, :]
+    s = s[s > tol]
+
+    # z = x - A.T inv(A A.T) A x
+    def null_space(x):
+        # v = U 1/s V.T x = inv(A A.T) A x
+        aux1 = Vt.dot(x)
+        aux2 = 1/s*aux1
+        v = U.dot(aux2)
+        z = x - A.T.dot(v)
+
+        # Iterative refinement to improve roundoff
+        # errors described in [2]_, algorithm 5.1.
+        k = 0
+        while orthogonality(A, z) > orth_tol:
+            if k >= max_refin:
+                break
+            # v = U 1/s V.T x = inv(A A.T) A x
+            aux1 = Vt.dot(z)
+            aux2 = 1/s*aux1
+            v = U.dot(aux2)
+            # z_next = z - A.T v
+            z = z - A.T.dot(v)
+            k += 1
+
+        return z
+
+    # z = inv(A A.T) A x
+    def least_squares(x):
+        # z = U 1/s V.T x = inv(A A.T) A x
+        aux1 = Vt.dot(x)
+        aux2 = 1/s*aux1
+        z = U.dot(aux2)
+        return z
+
+    # z = A.T inv(A A.T) x
+    def row_space(x):
+        # z = V 1/s U.T x
+        aux1 = U.T.dot(x)
+        aux2 = 1/s*aux1
+        z = Vt.T.dot(aux2)
+        return z
+
+    return null_space, least_squares, row_space
+
+
+def projections(A, method=None, orth_tol=1e-12, max_refin=3, tol=1e-15):
+    """Return three linear operators related with a given matrix A.
+
+    Parameters
+    ----------
+    A : sparse matrix (or ndarray), shape (m, n)
+        Matrix ``A`` used in the projection.
+    method : string, optional
+        Method used for compute the given linear
+        operators. Should be one of:
+
+            - 'NormalEquation': The operators
+               will be computed using the
+               so-called normal equation approach
+               explained in [1]_. In order to do
+               so the Cholesky factorization of
+               ``(A A.T)`` is computed. Exclusive
+               for sparse matrices.
+            - 'AugmentedSystem': The operators
+               will be computed using the
+               so-called augmented system approach
+               explained in [1]_. Exclusive
+               for sparse matrices.
+            - 'QRFactorization': Compute projections
+               using QR factorization. Exclusive for
+               dense matrices.
+            - 'SVDFactorization': Compute projections
+               using SVD factorization. Exclusive for
+               dense matrices.
+
+    orth_tol : float, optional
+        Tolerance for iterative refinements.
+    max_refin : int, optional
+        Maximum number of iterative refinements.
+    tol : float, optional
+        Tolerance for singular values.
+
+    Returns
+    -------
+    Z : LinearOperator, shape (n, n)
+        Null-space operator. For a given vector ``x``,
+        the null space operator is equivalent to apply
+        a projection matrix ``P = I - A.T inv(A A.T) A``
+        to the vector. It can be shown that this is
+        equivalent to project ``x`` into the null space
+        of A.
+    LS : LinearOperator, shape (m, n)
+        Least-squares operator. For a given vector ``x``,
+        the least-squares operator is equivalent to apply a
+        pseudoinverse matrix ``pinv(A.T) = inv(A A.T) A``
+        to the vector. It can be shown that this vector
+        ``pinv(A.T) x`` is the least_square solution to
+        ``A.T y = x``.
+    Y : LinearOperator, shape (n, m)
+        Row-space operator. For a given vector ``x``,
+        the row-space operator is equivalent to apply a
+        projection matrix ``Q = A.T inv(A A.T)``
+        to the vector.  It can be shown that this
+        vector ``y = Q x``  the minimum norm solution
+        of ``A y = x``.
+
+    Notes
+    -----
+    Uses iterative refinements described in [1]
+    during the computation of ``Z`` in order to
+    cope with the possibility of large roundoff errors.
+
+    References
+    ----------
+    .. [1] Gould, Nicholas IM, Mary E. Hribar, and Jorge Nocedal.
+        "On the solution of equality constrained quadratic
+        programming problems arising in optimization."
+        SIAM Journal on Scientific Computing 23.4 (2001): 1376-1395.
+    """
+    m, n = np.shape(A)
+
+    # The factorization of an empty matrix
+    # only works for the sparse representation.
+    if m*n == 0:
+        A = csc_matrix(A)
+
+    # Check Argument
+    if issparse(A):
+        if method is None:
+            method = "AugmentedSystem"
+        if method not in ("NormalEquation", "AugmentedSystem"):
+            raise ValueError("Method not allowed for sparse matrix.")
+        if method == "NormalEquation" and not sksparse_available:
+            warnings.warn("Only accepts 'NormalEquation' option when "
+                          "scikit-sparse is available. Using "
+                          "'AugmentedSystem' option instead.",
+                          ImportWarning, stacklevel=3)
+            method = 'AugmentedSystem'
+    else:
+        if method is None:
+            method = "QRFactorization"
+        if method not in ("QRFactorization", "SVDFactorization"):
+            raise ValueError("Method not allowed for dense array.")
+
+    if method == 'NormalEquation':
+        null_space, least_squares, row_space \
+            = normal_equation_projections(A, m, n, orth_tol, max_refin, tol)
+    elif method == 'AugmentedSystem':
+        null_space, least_squares, row_space \
+            = augmented_system_projections(A, m, n, orth_tol, max_refin, tol)
+    elif method == "QRFactorization":
+        null_space, least_squares, row_space \
+            = qr_factorization_projections(A, m, n, orth_tol, max_refin, tol)
+    elif method == "SVDFactorization":
+        null_space, least_squares, row_space \
+            = svd_factorization_projections(A, m, n, orth_tol, max_refin, tol)
+
+    Z = LinearOperator((n, n), null_space)
+    LS = LinearOperator((m, n), least_squares)
+    Y = LinearOperator((n, m), row_space)
+
+    return Z, LS, Y

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/qp_subproblem.py

@@ -0,0 +1,637 @@
+"""Equality-constrained quadratic programming solvers."""
+
+from scipy.sparse import (linalg, bmat, csc_matrix)
+from math import copysign
+import numpy as np
+from numpy.linalg import norm
+
+__all__ = [
+    'eqp_kktfact',
+    'sphere_intersections',
+    'box_intersections',
+    'box_sphere_intersections',
+    'inside_box_boundaries',
+    'modified_dogleg',
+    'projected_cg'
+]
+
+
+# For comparison with the projected CG
+def eqp_kktfact(H, c, A, b):
+    """Solve equality-constrained quadratic programming (EQP) problem.
+
+    Solve ``min 1/2 x.T H x + x.t c`` subject to ``A x + b = 0``
+    using direct factorization of the KKT system.
+
+    Parameters
+    ----------
+    H : sparse matrix, shape (n, n)
+        Hessian matrix of the EQP problem.
+    c : array_like, shape (n,)
+        Gradient of the quadratic objective function.
+    A : sparse matrix
+        Jacobian matrix of the EQP problem.
+    b : array_like, shape (m,)
+        Right-hand side of the constraint equation.
+
+    Returns
+    -------
+    x : array_like, shape (n,)
+        Solution of the KKT problem.
+    lagrange_multipliers : ndarray, shape (m,)
+        Lagrange multipliers of the KKT problem.
+    """
+    n, = np.shape(c)  # Number of parameters
+    m, = np.shape(b)  # Number of constraints
+
+    # Karush-Kuhn-Tucker matrix of coefficients.
+    # Defined as in Nocedal/Wright "Numerical
+    # Optimization" p.452 in Eq. (16.4).
+    kkt_matrix = csc_matrix(bmat([[H, A.T], [A, None]]))
+    # Vector of coefficients.
+    kkt_vec = np.hstack([-c, -b])
+
+    # TODO: Use a symmetric indefinite factorization
+    #       to solve the system twice as fast (because
+    #       of the symmetry).
+    lu = linalg.splu(kkt_matrix)
+    kkt_sol = lu.solve(kkt_vec)
+    x = kkt_sol[:n]
+    lagrange_multipliers = -kkt_sol[n:n+m]
+
+    return x, lagrange_multipliers
+
+
+def sphere_intersections(z, d, trust_radius,
+                         entire_line=False):
+    """Find the intersection between segment (or line) and spherical constraints.
+
+    Find the intersection between the segment (or line) defined by the
+    parametric  equation ``x(t) = z + t*d`` and the ball
+    ``||x|| <= trust_radius``.
+
+    Parameters
+    ----------
+    z : array_like, shape (n,)
+        Initial point.
+    d : array_like, shape (n,)
+        Direction.
+    trust_radius : float
+        Ball radius.
+    entire_line : bool, optional
+        When ``True``, the function returns the intersection between the line
+        ``x(t) = z + t*d`` (``t`` can assume any value) and the ball
+        ``||x|| <= trust_radius``. When ``False``, the function returns the intersection
+        between the segment ``x(t) = z + t*d``, ``0 <= t <= 1``, and the ball.
+
+    Returns
+    -------
+    ta, tb : float
+        The line/segment ``x(t) = z + t*d`` is inside the ball for
+        for ``ta <= t <= tb``.
+    intersect : bool
+        When ``True``, there is a intersection between the line/segment
+        and the sphere. On the other hand, when ``False``, there is no
+        intersection.
+    """
+    # Special case when d=0
+    if norm(d) == 0:
+        return 0, 0, False
+    # Check for inf trust_radius
+    if np.isinf(trust_radius):
+        if entire_line:
+            ta = -np.inf
+            tb = np.inf
+        else:
+            ta = 0
+            tb = 1
+        intersect = True
+        return ta, tb, intersect
+
+    a = np.dot(d, d)
+    b = 2 * np.dot(z, d)
+    c = np.dot(z, z) - trust_radius**2
+    discriminant = b*b - 4*a*c
+    if discriminant < 0:
+        intersect = False
+        return 0, 0, intersect
+    sqrt_discriminant = np.sqrt(discriminant)
+
+    # The following calculation is mathematically
+    # equivalent to:
+    # ta = (-b - sqrt_discriminant) / (2*a)
+    # tb = (-b + sqrt_discriminant) / (2*a)
+    # but produce smaller round off errors.
+    # Look at Matrix Computation p.97
+    # for a better justification.
+    aux = b + copysign(sqrt_discriminant, b)
+    ta = -aux / (2*a)
+    tb = -2*c / aux
+    ta, tb = sorted([ta, tb])
+
+    if entire_line:
+        intersect = True
+    else:
+        # Checks to see if intersection happens
+        # within vectors length.
+        if tb < 0 or ta > 1:
+            intersect = False
+            ta = 0
+            tb = 0
+        else:
+            intersect = True
+            # Restrict intersection interval
+            # between 0 and 1.
+            ta = max(0, ta)
+            tb = min(1, tb)
+
+    return ta, tb, intersect
+
+
+def box_intersections(z, d, lb, ub,
+                      entire_line=False):
+    """Find the intersection between segment (or line) and box constraints.
+
+    Find the intersection between the segment (or line) defined by the
+    parametric  equation ``x(t) = z + t*d`` and the rectangular box
+    ``lb <= x <= ub``.
+
+    Parameters
+    ----------
+    z : array_like, shape (n,)
+        Initial point.
+    d : array_like, shape (n,)
+        Direction.
+    lb : array_like, shape (n,)
+        Lower bounds to each one of the components of ``x``. Used
+        to delimit the rectangular box.
+    ub : array_like, shape (n, )
+        Upper bounds to each one of the components of ``x``. Used
+        to delimit the rectangular box.
+    entire_line : bool, optional
+        When ``True``, the function returns the intersection between the line
+        ``x(t) = z + t*d`` (``t`` can assume any value) and the rectangular
+        box. When ``False``, the function returns the intersection between the segment
+        ``x(t) = z + t*d``, ``0 <= t <= 1``, and the rectangular box.
+
+    Returns
+    -------
+    ta, tb : float
+        The line/segment ``x(t) = z + t*d`` is inside the box for
+        for ``ta <= t <= tb``.
+    intersect : bool
+        When ``True``, there is a intersection between the line (or segment)
+        and the rectangular box. On the other hand, when ``False``, there is no
+        intersection.
+    """
+    # Make sure it is a numpy array
+    z = np.asarray(z)
+    d = np.asarray(d)
+    lb = np.asarray(lb)
+    ub = np.asarray(ub)
+    # Special case when d=0
+    if norm(d) == 0:
+        return 0, 0, False
+
+    # Get values for which d==0
+    zero_d = (d == 0)
+    # If the boundaries are not satisfied for some coordinate
+    # for which "d" is zero, there is no box-line intersection.
+    if (z[zero_d] < lb[zero_d]).any() or (z[zero_d] > ub[zero_d]).any():
+        intersect = False
+        return 0, 0, intersect
+    # Remove values for which d is zero
+    not_zero_d = np.logical_not(zero_d)
+    z = z[not_zero_d]
+    d = d[not_zero_d]
+    lb = lb[not_zero_d]
+    ub = ub[not_zero_d]
+
+    # Find a series of intervals (t_lb[i], t_ub[i]).
+    t_lb = (lb-z) / d
+    t_ub = (ub-z) / d
+    # Get the intersection of all those intervals.
+    ta = max(np.minimum(t_lb, t_ub))
+    tb = min(np.maximum(t_lb, t_ub))
+
+    # Check if intersection is feasible
+    if ta <= tb:
+        intersect = True
+    else:
+        intersect = False
+    # Checks to see if intersection happens within vectors length.
+    if not entire_line:
+        if tb < 0 or ta > 1:
+            intersect = False
+            ta = 0
+            tb = 0
+        else:
+            # Restrict intersection interval between 0 and 1.
+            ta = max(0, ta)
+            tb = min(1, tb)
+
+    return ta, tb, intersect
+
+
+def box_sphere_intersections(z, d, lb, ub, trust_radius,
+                             entire_line=False,
+                             extra_info=False):
+    """Find the intersection between segment (or line) and box/sphere constraints.
+
+    Find the intersection between the segment (or line) defined by the
+    parametric  equation ``x(t) = z + t*d``, the rectangular box
+    ``lb <= x <= ub`` and the ball ``||x|| <= trust_radius``.
+
+    Parameters
+    ----------
+    z : array_like, shape (n,)
+        Initial point.
+    d : array_like, shape (n,)
+        Direction.
+    lb : array_like, shape (n,)
+        Lower bounds to each one of the components of ``x``. Used
+        to delimit the rectangular box.
+    ub : array_like, shape (n, )
+        Upper bounds to each one of the components of ``x``. Used
+        to delimit the rectangular box.
+    trust_radius : float
+        Ball radius.
+    entire_line : bool, optional
+        When ``True``, the function returns the intersection between the line
+        ``x(t) = z + t*d`` (``t`` can assume any value) and the constraints.
+        When ``False``, the function returns the intersection between the segment
+        ``x(t) = z + t*d``, ``0 <= t <= 1`` and the constraints.
+    extra_info : bool, optional
+        When ``True``, the function returns ``intersect_sphere`` and ``intersect_box``.
+
+    Returns
+    -------
+    ta, tb : float
+        The line/segment ``x(t) = z + t*d`` is inside the rectangular box and
+        inside the ball for ``ta <= t <= tb``.
+    intersect : bool
+        When ``True``, there is a intersection between the line (or segment)
+        and both constraints. On the other hand, when ``False``, there is no
+        intersection.
+    sphere_info : dict, optional
+        Dictionary ``{ta, tb, intersect}`` containing the interval ``[ta, tb]``
+        for which the line intercepts the ball. And a boolean value indicating
+        whether the sphere is intersected by the line.
+    box_info : dict, optional
+        Dictionary ``{ta, tb, intersect}`` containing the interval ``[ta, tb]``
+        for which the line intercepts the box. And a boolean value indicating
+        whether the box is intersected by the line.
+    """
+    ta_b, tb_b, intersect_b = box_intersections(z, d, lb, ub,
+                                                entire_line)
+    ta_s, tb_s, intersect_s = sphere_intersections(z, d,
+                                                   trust_radius,
+                                                   entire_line)
+    ta = np.maximum(ta_b, ta_s)
+    tb = np.minimum(tb_b, tb_s)
+    if intersect_b and intersect_s and ta <= tb:
+        intersect = True
+    else:
+        intersect = False
+
+    if extra_info:
+        sphere_info = {'ta': ta_s, 'tb': tb_s, 'intersect': intersect_s}
+        box_info = {'ta': ta_b, 'tb': tb_b, 'intersect': intersect_b}
+        return ta, tb, intersect, sphere_info, box_info
+    else:
+        return ta, tb, intersect
+
+
+def inside_box_boundaries(x, lb, ub):
+    """Check if lb <= x <= ub."""
+    return (lb <= x).all() and (x <= ub).all()
+
+
+def reinforce_box_boundaries(x, lb, ub):
+    """Return clipped value of x"""
+    return np.minimum(np.maximum(x, lb), ub)
+
+
+def modified_dogleg(A, Y, b, trust_radius, lb, ub):
+    """Approximately  minimize ``1/2*|| A x + b ||^2`` inside trust-region.
+
+    Approximately solve the problem of minimizing ``1/2*|| A x + b ||^2``
+    subject to ``||x|| < Delta`` and ``lb <= x <= ub`` using a modification
+    of the classical dogleg approach.
+
+    Parameters
+    ----------
+    A : LinearOperator (or sparse matrix or ndarray), shape (m, n)
+        Matrix ``A`` in the minimization problem. It should have
+        dimension ``(m, n)`` such that ``m < n``.
+    Y : LinearOperator (or sparse matrix or ndarray), shape (n, m)
+        LinearOperator that apply the projection matrix
+        ``Q = A.T inv(A A.T)`` to the vector. The obtained vector
+        ``y = Q x`` being the minimum norm solution of ``A y = x``.
+    b : array_like, shape (m,)
+        Vector ``b``in the minimization problem.
+    trust_radius: float
+        Trust radius to be considered. Delimits a sphere boundary
+        to the problem.
+    lb : array_like, shape (n,)
+        Lower bounds to each one of the components of ``x``.
+        It is expected that ``lb <= 0``, otherwise the algorithm
+        may fail. If ``lb[i] = -Inf``, the lower
+        bound for the ith component is just ignored.
+    ub : array_like, shape (n, )
+        Upper bounds to each one of the components of ``x``.
+        It is expected that ``ub >= 0``, otherwise the algorithm
+        may fail. If ``ub[i] = Inf``, the upper bound for the ith
+        component is just ignored.
+
+    Returns
+    -------
+    x : array_like, shape (n,)
+        Solution to the problem.
+
+    Notes
+    -----
+    Based on implementations described in pp. 885-886 from [1]_.
+
+    References
+    ----------
+    .. [1] Byrd, Richard H., Mary E. Hribar, and Jorge Nocedal.
+           "An interior point algorithm for large-scale nonlinear
+           programming." SIAM Journal on Optimization 9.4 (1999): 877-900.
+    """
+    # Compute minimum norm minimizer of 1/2*|| A x + b ||^2.
+    newton_point = -Y.dot(b)
+    # Check for interior point
+    if inside_box_boundaries(newton_point, lb, ub)  \
+       and norm(newton_point) <= trust_radius:
+        x = newton_point
+        return x
+
+    # Compute gradient vector ``g = A.T b``
+    g = A.T.dot(b)
+    # Compute Cauchy point
+    # `cauchy_point = g.T g / (g.T A.T A g)``.
+    A_g = A.dot(g)
+    cauchy_point = -np.dot(g, g) / np.dot(A_g, A_g) * g
+    # Origin
+    origin_point = np.zeros_like(cauchy_point)
+
+    # Check the segment between cauchy_point and newton_point
+    # for a possible solution.
+    z = cauchy_point
+    p = newton_point - cauchy_point
+    _, alpha, intersect = box_sphere_intersections(z, p, lb, ub,
+                                                   trust_radius)
+    if intersect:
+        x1 = z + alpha*p
+    else:
+        # Check the segment between the origin and cauchy_point
+        # for a possible solution.
+        z = origin_point
+        p = cauchy_point
+        _, alpha, _ = box_sphere_intersections(z, p, lb, ub,
+                                               trust_radius)
+        x1 = z + alpha*p
+
+    # Check the segment between origin and newton_point
+    # for a possible solution.
+    z = origin_point
+    p = newton_point
+    _, alpha, _ = box_sphere_intersections(z, p, lb, ub,
+                                           trust_radius)
+    x2 = z + alpha*p
+
+    # Return the best solution among x1 and x2.
+    if norm(A.dot(x1) + b) < norm(A.dot(x2) + b):
+        return x1
+    else:
+        return x2
+
+
+def projected_cg(H, c, Z, Y, b, trust_radius=np.inf,
+                 lb=None, ub=None, tol=None,
+                 max_iter=None, max_infeasible_iter=None,
+                 return_all=False):
+    """Solve EQP problem with projected CG method.
+
+    Solve equality-constrained quadratic programming problem
+    ``min 1/2 x.T H x + x.t c``  subject to ``A x + b = 0`` and,
+    possibly, to trust region constraints ``||x|| < trust_radius``
+    and box constraints ``lb <= x <= ub``.
+
+    Parameters
+    ----------
+    H : LinearOperator (or sparse matrix or ndarray), shape (n, n)
+        Operator for computing ``H v``.
+    c : array_like, shape (n,)
+        Gradient of the quadratic objective function.
+    Z : LinearOperator (or sparse matrix or ndarray), shape (n, n)
+        Operator for projecting ``x`` into the null space of A.
+    Y : LinearOperator,  sparse matrix, ndarray, shape (n, m)
+        Operator that, for a given a vector ``b``, compute smallest
+        norm solution of ``A x + b = 0``.
+    b : array_like, shape (m,)
+        Right-hand side of the constraint equation.
+    trust_radius : float, optional
+        Trust radius to be considered. By default, uses ``trust_radius=inf``,
+        which means no trust radius at all.
+    lb : array_like, shape (n,), optional
+        Lower bounds to each one of the components of ``x``.
+        If ``lb[i] = -Inf`` the lower bound for the i-th
+        component is just ignored (default).
+    ub : array_like, shape (n, ), optional
+        Upper bounds to each one of the components of ``x``.
+        If ``ub[i] = Inf`` the upper bound for the i-th
+        component is just ignored (default).
+    tol : float, optional
+        Tolerance used to interrupt the algorithm.
+    max_iter : int, optional
+        Maximum algorithm iterations. Where ``max_inter <= n-m``.
+        By default, uses ``max_iter = n-m``.
+    max_infeasible_iter : int, optional
+        Maximum infeasible (regarding box constraints) iterations the
+        algorithm is allowed to take.
+        By default, uses ``max_infeasible_iter = n-m``.
+    return_all : bool, optional
+        When ``true``, return the list of all vectors through the iterations.
+
+    Returns
+    -------
+    x : array_like, shape (n,)
+        Solution of the EQP problem.
+    info : Dict
+        Dictionary containing the following:
+
+            - niter : Number of iterations.
+            - stop_cond : Reason for algorithm termination:
+                1. Iteration limit was reached;
+                2. Reached the trust-region boundary;
+                3. Negative curvature detected;
+                4. Tolerance was satisfied.
+            - allvecs : List containing all intermediary vectors (optional).
+            - hits_boundary : True if the proposed step is on the boundary
+              of the trust region.
+
+    Notes
+    -----
+    Implementation of Algorithm 6.2 on [1]_.
+
+    In the absence of spherical and box constraints, for sufficient
+    iterations, the method returns a truly optimal result.
+    In the presence of those constraints, the value returned is only
+    a inexpensive approximation of the optimal value.
+
+    References
+    ----------
+    .. [1] Gould, Nicholas IM, Mary E. Hribar, and Jorge Nocedal.
+           "On the solution of equality constrained quadratic
+            programming problems arising in optimization."
+            SIAM Journal on Scientific Computing 23.4 (2001): 1376-1395.
+    """
+    CLOSE_TO_ZERO = 1e-25
+
+    n, = np.shape(c)  # Number of parameters
+    m, = np.shape(b)  # Number of constraints
+
+    # Initial Values
+    x = Y.dot(-b)
+    r = Z.dot(H.dot(x) + c)
+    g = Z.dot(r)
+    p = -g
+
+    # Store ``x`` value
+    if return_all:
+        allvecs = [x]
+    # Values for the first iteration
+    H_p = H.dot(p)
+    rt_g = norm(g)**2  # g.T g = r.T Z g = r.T g (ref [1]_ p.1389)
+
+    # If x > trust-region the problem does not have a solution.
+    tr_distance = trust_radius - norm(x)
+    if tr_distance < 0:
+        raise ValueError("Trust region problem does not have a solution.")
+    # If x == trust_radius, then x is the solution
+    # to the optimization problem, since x is the
+    # minimum norm solution to Ax=b.
+    elif tr_distance < CLOSE_TO_ZERO:
+        info = {'niter': 0, 'stop_cond': 2, 'hits_boundary': True}
+        if return_all:
+            allvecs.append(x)
+            info['allvecs'] = allvecs
+        return x, info
+
+    # Set default tolerance
+    if tol is None:
+        tol = max(min(0.01 * np.sqrt(rt_g), 0.1 * rt_g), CLOSE_TO_ZERO)
+    # Set default lower and upper bounds
+    if lb is None:
+        lb = np.full(n, -np.inf)
+    if ub is None:
+        ub = np.full(n, np.inf)
+    # Set maximum iterations
+    if max_iter is None:
+        max_iter = n-m
+    max_iter = min(max_iter, n-m)
+    # Set maximum infeasible iterations
+    if max_infeasible_iter is None:
+        max_infeasible_iter = n-m
+
+    hits_boundary = False
+    stop_cond = 1
+    counter = 0
+    last_feasible_x = np.zeros_like(x)
+    k = 0
+    for i in range(max_iter):
+        # Stop criteria - Tolerance : r.T g < tol
+        if rt_g < tol:
+            stop_cond = 4
+            break
+        k += 1
+        # Compute curvature
+        pt_H_p = H_p.dot(p)
+        # Stop criteria - Negative curvature
+        if pt_H_p <= 0:
+            if np.isinf(trust_radius):
+                raise ValueError("Negative curvature not allowed "
+                                 "for unrestricted problems.")
+            else:
+                # Find intersection with constraints
+                _, alpha, intersect = box_sphere_intersections(
+                    x, p, lb, ub, trust_radius, entire_line=True)
+                # Update solution
+                if intersect:
+                    x = x + alpha*p
+                # Reinforce variables are inside box constraints.
+                # This is only necessary because of roundoff errors.
+                x = reinforce_box_boundaries(x, lb, ub)
+                # Attribute information
+                stop_cond = 3
+                hits_boundary = True
+                break
+
+        # Get next step
+        alpha = rt_g / pt_H_p
+        x_next = x + alpha*p
+
+        # Stop criteria - Hits boundary
+        if np.linalg.norm(x_next) >= trust_radius:
+            # Find intersection with box constraints
+            _, theta, intersect = box_sphere_intersections(x, alpha*p, lb, ub,
+                                                           trust_radius)
+            # Update solution
+            if intersect:
+                x = x + theta*alpha*p
+            # Reinforce variables are inside box constraints.
+            # This is only necessary because of roundoff errors.
+            x = reinforce_box_boundaries(x, lb, ub)
+            # Attribute information
+            stop_cond = 2
+            hits_boundary = True
+            break
+
+        # Check if ``x`` is inside the box and start counter if it is not.
+        if inside_box_boundaries(x_next, lb, ub):
+            counter = 0
+        else:
+            counter += 1
+        # Whenever outside box constraints keep looking for intersections.
+        if counter > 0:
+            _, theta, intersect = box_sphere_intersections(x, alpha*p, lb, ub,
+                                                           trust_radius)
+            if intersect:
+                last_feasible_x = x + theta*alpha*p
+                # Reinforce variables are inside box constraints.
+                # This is only necessary because of roundoff errors.
+                last_feasible_x = reinforce_box_boundaries(last_feasible_x,
+                                                           lb, ub)
+                counter = 0
+        # Stop after too many infeasible (regarding box constraints) iteration.
+        if counter > max_infeasible_iter:
+            break
+        # Store ``x_next`` value
+        if return_all:
+            allvecs.append(x_next)
+
+        # Update residual
+        r_next = r + alpha*H_p
+        # Project residual g+ = Z r+
+        g_next = Z.dot(r_next)
+        # Compute conjugate direction step d
+        rt_g_next = norm(g_next)**2  # g.T g = r.T g (ref [1]_ p.1389)
+        beta = rt_g_next / rt_g
+        p = - g_next + beta*p
+        # Prepare for next iteration
+        x = x_next
+        g = g_next
+        r = g_next
+        rt_g = norm(g)**2  # g.T g = r.T Z g = r.T g (ref [1]_ p.1389)
+        H_p = H.dot(p)
+
+    if not inside_box_boundaries(x, lb, ub):
+        x = last_feasible_x
+        hits_boundary = True
+    info = {'niter': k, 'stop_cond': stop_cond,
+            'hits_boundary': hits_boundary}
+    if return_all:
+        info['allvecs'] = allvecs
+    return x, info

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/report.py

@@ -0,0 +1,51 @@
+"""Progress report printers."""
+
+from __future__ import annotations
+
+class ReportBase:
+    COLUMN_NAMES: list[str] = NotImplemented
+    COLUMN_WIDTHS: list[int] = NotImplemented
+    ITERATION_FORMATS: list[str] = NotImplemented
+
+    @classmethod
+    def print_header(cls):
+        fmt = ("|"
+               + "|".join([f"{{:^{x}}}" for x in cls.COLUMN_WIDTHS])
+               + "|")
+        separators = ['-' * x for x in cls.COLUMN_WIDTHS]
+        print(fmt.format(*cls.COLUMN_NAMES))
+        print(fmt.format(*separators))
+
+    @classmethod
+    def print_iteration(cls, *args):
+        iteration_format = [f"{{:{x}}}" for x in cls.ITERATION_FORMATS]
+        fmt = "|" + "|".join(iteration_format) + "|"
+        print(fmt.format(*args))
+
+    @classmethod
+    def print_footer(cls):
+        print()
+
+
+class BasicReport(ReportBase):
+    COLUMN_NAMES = ["niter", "f evals", "CG iter", "obj func", "tr radius",
+                    "opt", "c viol"]
+    COLUMN_WIDTHS = [7, 7, 7, 13, 10, 10, 10]
+    ITERATION_FORMATS = ["^7", "^7", "^7", "^+13.4e",
+                         "^10.2e", "^10.2e", "^10.2e"]
+
+
+class SQPReport(ReportBase):
+    COLUMN_NAMES = ["niter", "f evals", "CG iter", "obj func", "tr radius",
+                    "opt", "c viol", "penalty", "CG stop"]
+    COLUMN_WIDTHS = [7, 7, 7, 13, 10, 10, 10, 10, 7]
+    ITERATION_FORMATS = ["^7", "^7", "^7", "^+13.4e", "^10.2e", "^10.2e",
+                         "^10.2e", "^10.2e", "^7"]
+
+
+class IPReport(ReportBase):
+    COLUMN_NAMES = ["niter", "f evals", "CG iter", "obj func", "tr radius",
+                    "opt", "c viol", "penalty", "barrier param", "CG stop"]
+    COLUMN_WIDTHS = [7, 7, 7, 13, 10, 10, 10, 10, 13, 7]
+    ITERATION_FORMATS = ["^7", "^7", "^7", "^+13.4e", "^10.2e", "^10.2e",
+                         "^10.2e", "^10.2e", "^13.2e", "^7"]

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/tests/test_canonical_constraint.py

@@ -0,0 +1,296 @@
+import numpy as np
+from numpy.testing import assert_array_equal, assert_equal
+from scipy.optimize._constraints import (NonlinearConstraint, Bounds,
+                                         PreparedConstraint)
+from scipy.optimize._trustregion_constr.canonical_constraint \
+    import CanonicalConstraint, initial_constraints_as_canonical
+
+
+def create_quadratic_function(n, m, rng):
+    a = rng.rand(m)
+    A = rng.rand(m, n)
+    H = rng.rand(m, n, n)
+    HT = np.transpose(H, (1, 2, 0))
+
+    def fun(x):
+        return a + A.dot(x) + 0.5 * H.dot(x).dot(x)
+
+    def jac(x):
+        return A + H.dot(x)
+
+    def hess(x, v):
+        return HT.dot(v)
+
+    return fun, jac, hess
+
+
+def test_bounds_cases():
+    # Test 1: no constraints.
+    user_constraint = Bounds(-np.inf, np.inf)
+    x0 = np.array([-1, 2])
+    prepared_constraint = PreparedConstraint(user_constraint, x0, False)
+    c = CanonicalConstraint.from_PreparedConstraint(prepared_constraint)
+
+    assert_equal(c.n_eq, 0)
+    assert_equal(c.n_ineq, 0)
+
+    c_eq, c_ineq = c.fun(x0)
+    assert_array_equal(c_eq, [])
+    assert_array_equal(c_ineq, [])
+
+    J_eq, J_ineq = c.jac(x0)
+    assert_array_equal(J_eq, np.empty((0, 2)))
+    assert_array_equal(J_ineq, np.empty((0, 2)))
+
+    assert_array_equal(c.keep_feasible, [])
+
+    # Test 2: infinite lower bound.
+    user_constraint = Bounds(-np.inf, [0, np.inf, 1], [False, True, True])
+    x0 = np.array([-1, -2, -3], dtype=float)
+    prepared_constraint = PreparedConstraint(user_constraint, x0, False)
+    c = CanonicalConstraint.from_PreparedConstraint(prepared_constraint)
+
+    assert_equal(c.n_eq, 0)
+    assert_equal(c.n_ineq, 2)
+
+    c_eq, c_ineq = c.fun(x0)
+    assert_array_equal(c_eq, [])
+    assert_array_equal(c_ineq, [-1, -4])
+
+    J_eq, J_ineq = c.jac(x0)
+    assert_array_equal(J_eq, np.empty((0, 3)))
+    assert_array_equal(J_ineq, np.array([[1, 0, 0], [0, 0, 1]]))
+
+    assert_array_equal(c.keep_feasible, [False, True])
+
+    # Test 3: infinite upper bound.
+    user_constraint = Bounds([0, 1, -np.inf], np.inf, [True, False, True])
+    x0 = np.array([1, 2, 3], dtype=float)
+    prepared_constraint = PreparedConstraint(user_constraint, x0, False)
+    c = CanonicalConstraint.from_PreparedConstraint(prepared_constraint)
+
+    assert_equal(c.n_eq, 0)
+    assert_equal(c.n_ineq, 2)
+
+    c_eq, c_ineq = c.fun(x0)
+    assert_array_equal(c_eq, [])
+    assert_array_equal(c_ineq, [-1, -1])
+
+    J_eq, J_ineq = c.jac(x0)
+    assert_array_equal(J_eq, np.empty((0, 3)))
+    assert_array_equal(J_ineq, np.array([[-1, 0, 0], [0, -1, 0]]))
+
+    assert_array_equal(c.keep_feasible, [True, False])
+
+    # Test 4: interval constraint.
+    user_constraint = Bounds([-1, -np.inf, 2, 3], [1, np.inf, 10, 3],
+                             [False, True, True, True])
+    x0 = np.array([0, 10, 8, 5])
+    prepared_constraint = PreparedConstraint(user_constraint, x0, False)
+    c = CanonicalConstraint.from_PreparedConstraint(prepared_constraint)
+
+    assert_equal(c.n_eq, 1)
+    assert_equal(c.n_ineq, 4)
+
+    c_eq, c_ineq = c.fun(x0)
+    assert_array_equal(c_eq, [2])
+    assert_array_equal(c_ineq, [-1, -2, -1, -6])
+
+    J_eq, J_ineq = c.jac(x0)
+    assert_array_equal(J_eq, [[0, 0, 0, 1]])
+    assert_array_equal(J_ineq, [[1, 0, 0, 0],
+                                [0, 0, 1, 0],
+                                [-1, 0, 0, 0],
+                                [0, 0, -1, 0]])
+
+    assert_array_equal(c.keep_feasible, [False, True, False, True])
+
+
+def test_nonlinear_constraint():
+    n = 3
+    m = 5
+    rng = np.random.RandomState(0)
+    x0 = rng.rand(n)
+
+    fun, jac, hess = create_quadratic_function(n, m, rng)
+    f = fun(x0)
+    J = jac(x0)
+
+    lb = [-10, 3, -np.inf, -np.inf, -5]
+    ub = [10, 3, np.inf, 3, np.inf]
+    user_constraint = NonlinearConstraint(
+        fun, lb, ub, jac, hess, [True, False, False, True, False])
+
+    for sparse_jacobian in [False, True]:
+        prepared_constraint = PreparedConstraint(user_constraint, x0,
+                                                 sparse_jacobian)
+        c = CanonicalConstraint.from_PreparedConstraint(prepared_constraint)
+
+        assert_array_equal(c.n_eq, 1)
+        assert_array_equal(c.n_ineq, 4)
+
+        c_eq, c_ineq = c.fun(x0)
+        assert_array_equal(c_eq, [f[1] - lb[1]])
+        assert_array_equal(c_ineq, [f[3] - ub[3], lb[4] - f[4],
+                                    f[0] - ub[0], lb[0] - f[0]])
+
+        J_eq, J_ineq = c.jac(x0)
+        if sparse_jacobian:
+            J_eq = J_eq.toarray()
+            J_ineq = J_ineq.toarray()
+
+        assert_array_equal(J_eq, J[1, None])
+        assert_array_equal(J_ineq, np.vstack((J[3], -J[4], J[0], -J[0])))
+
+        v_eq = rng.rand(c.n_eq)
+        v_ineq = rng.rand(c.n_ineq)
+        v = np.zeros(m)
+        v[1] = v_eq[0]
+        v[3] = v_ineq[0]
+        v[4] = -v_ineq[1]
+        v[0] = v_ineq[2] - v_ineq[3]
+        assert_array_equal(c.hess(x0, v_eq, v_ineq), hess(x0, v))
+
+        assert_array_equal(c.keep_feasible, [True, False, True, True])
+
+
+def test_concatenation():
+    rng = np.random.RandomState(0)
+    n = 4
+    x0 = rng.rand(n)
+
+    f1 = x0
+    J1 = np.eye(n)
+    lb1 = [-1, -np.inf, -2, 3]
+    ub1 = [1, np.inf, np.inf, 3]
+    bounds = Bounds(lb1, ub1, [False, False, True, False])
+
+    fun, jac, hess = create_quadratic_function(n, 5, rng)
+    f2 = fun(x0)
+    J2 = jac(x0)
+    lb2 = [-10, 3, -np.inf, -np.inf, -5]
+    ub2 = [10, 3, np.inf, 5, np.inf]
+    nonlinear = NonlinearConstraint(
+        fun, lb2, ub2, jac, hess, [True, False, False, True, False])
+
+    for sparse_jacobian in [False, True]:
+        bounds_prepared = PreparedConstraint(bounds, x0, sparse_jacobian)
+        nonlinear_prepared = PreparedConstraint(nonlinear, x0, sparse_jacobian)
+
+        c1 = CanonicalConstraint.from_PreparedConstraint(bounds_prepared)
+        c2 = CanonicalConstraint.from_PreparedConstraint(nonlinear_prepared)
+        c = CanonicalConstraint.concatenate([c1, c2], sparse_jacobian)
+
+        assert_equal(c.n_eq, 2)
+        assert_equal(c.n_ineq, 7)
+
+        c_eq, c_ineq = c.fun(x0)
+        assert_array_equal(c_eq, [f1[3] - lb1[3], f2[1] - lb2[1]])
+        assert_array_equal(c_ineq, [lb1[2] - f1[2], f1[0] - ub1[0],
+                                    lb1[0] - f1[0], f2[3] - ub2[3],
+                                    lb2[4] - f2[4], f2[0] - ub2[0],
+                                    lb2[0] - f2[0]])
+
+        J_eq, J_ineq = c.jac(x0)
+        if sparse_jacobian:
+            J_eq = J_eq.toarray()
+            J_ineq = J_ineq.toarray()
+
+        assert_array_equal(J_eq, np.vstack((J1[3], J2[1])))
+        assert_array_equal(J_ineq, np.vstack((-J1[2], J1[0], -J1[0], J2[3],
+                                              -J2[4], J2[0], -J2[0])))
+
+        v_eq = rng.rand(c.n_eq)
+        v_ineq = rng.rand(c.n_ineq)
+        v = np.zeros(5)
+        v[1] = v_eq[1]
+        v[3] = v_ineq[3]
+        v[4] = -v_ineq[4]
+        v[0] = v_ineq[5] - v_ineq[6]
+        H = c.hess(x0, v_eq, v_ineq).dot(np.eye(n))
+        assert_array_equal(H, hess(x0, v))
+
+        assert_array_equal(c.keep_feasible,
+                           [True, False, False, True, False, True, True])
+
+
+def test_empty():
+    x = np.array([1, 2, 3])
+    c = CanonicalConstraint.empty(3)
+    assert_equal(c.n_eq, 0)
+    assert_equal(c.n_ineq, 0)
+
+    c_eq, c_ineq = c.fun(x)
+    assert_array_equal(c_eq, [])
+    assert_array_equal(c_ineq, [])
+
+    J_eq, J_ineq = c.jac(x)
+    assert_array_equal(J_eq, np.empty((0, 3)))
+    assert_array_equal(J_ineq, np.empty((0, 3)))
+
+    H = c.hess(x, None, None).toarray()
+    assert_array_equal(H, np.zeros((3, 3)))
+
+
+def test_initial_constraints_as_canonical():
+    # rng is only used to generate the coefficients of the quadratic
+    # function that is used by the nonlinear constraint.
+    rng = np.random.RandomState(0)
+
+    x0 = np.array([0.5, 0.4, 0.3, 0.2])
+    n = len(x0)
+
+    lb1 = [-1, -np.inf, -2, 3]
+    ub1 = [1, np.inf, np.inf, 3]
+    bounds = Bounds(lb1, ub1, [False, False, True, False])
+
+    fun, jac, hess = create_quadratic_function(n, 5, rng)
+    lb2 = [-10, 3, -np.inf, -np.inf, -5]
+    ub2 = [10, 3, np.inf, 5, np.inf]
+    nonlinear = NonlinearConstraint(
+        fun, lb2, ub2, jac, hess, [True, False, False, True, False])
+
+    for sparse_jacobian in [False, True]:
+        bounds_prepared = PreparedConstraint(bounds, x0, sparse_jacobian)
+        nonlinear_prepared = PreparedConstraint(nonlinear, x0, sparse_jacobian)
+
+        f1 = bounds_prepared.fun.f
+        J1 = bounds_prepared.fun.J
+        f2 = nonlinear_prepared.fun.f
+        J2 = nonlinear_prepared.fun.J
+
+        c_eq, c_ineq, J_eq, J_ineq = initial_constraints_as_canonical(
+            n, [bounds_prepared, nonlinear_prepared], sparse_jacobian)
+
+        assert_array_equal(c_eq, [f1[3] - lb1[3], f2[1] - lb2[1]])
+        assert_array_equal(c_ineq, [lb1[2] - f1[2], f1[0] - ub1[0],
+                                    lb1[0] - f1[0], f2[3] - ub2[3],
+                                    lb2[4] - f2[4], f2[0] - ub2[0],
+                                    lb2[0] - f2[0]])
+
+        if sparse_jacobian:
+            J1 = J1.toarray()
+            J2 = J2.toarray()
+            J_eq = J_eq.toarray()
+            J_ineq = J_ineq.toarray()
+
+        assert_array_equal(J_eq, np.vstack((J1[3], J2[1])))
+        assert_array_equal(J_ineq, np.vstack((-J1[2], J1[0], -J1[0], J2[3],
+                                              -J2[4], J2[0], -J2[0])))
+
+
+def test_initial_constraints_as_canonical_empty():
+    n = 3
+    for sparse_jacobian in [False, True]:
+        c_eq, c_ineq, J_eq, J_ineq = initial_constraints_as_canonical(
+            n, [], sparse_jacobian)
+
+        assert_array_equal(c_eq, [])
+        assert_array_equal(c_ineq, [])
+
+        if sparse_jacobian:
+            J_eq = J_eq.toarray()
+            J_ineq = J_ineq.toarray()
+
+        assert_array_equal(J_eq, np.empty((0, n)))
+        assert_array_equal(J_ineq, np.empty((0, n)))

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/tests/test_projections.py

@@ -0,0 +1,214 @@
+import numpy as np
+import scipy.linalg
+from scipy.sparse import csc_matrix
+from scipy.optimize._trustregion_constr.projections \
+    import projections, orthogonality
+from numpy.testing import (TestCase, assert_array_almost_equal,
+                           assert_equal, assert_allclose)
+
+try:
+    from sksparse.cholmod import cholesky_AAt  # noqa: F401
+    sksparse_available = True
+    available_sparse_methods = ("NormalEquation", "AugmentedSystem")
+except ImportError:
+    sksparse_available = False
+    available_sparse_methods = ("AugmentedSystem",)
+available_dense_methods = ('QRFactorization', 'SVDFactorization')
+
+
+class TestProjections(TestCase):
+
+    def test_nullspace_and_least_squares_sparse(self):
+        A_dense = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                            [0, 8, 7, 0, 1, 5, 9, 0],
+                            [1, 0, 0, 0, 0, 1, 2, 3]])
+        At_dense = A_dense.T
+        A = csc_matrix(A_dense)
+        test_points = ([1, 2, 3, 4, 5, 6, 7, 8],
+                       [1, 10, 3, 0, 1, 6, 7, 8],
+                       [1.12, 10, 0, 0, 100000, 6, 0.7, 8])
+
+        for method in available_sparse_methods:
+            Z, LS, _ = projections(A, method)
+            for z in test_points:
+                # Test if x is in the null_space
+                x = Z.matvec(z)
+                assert_array_almost_equal(A.dot(x), 0)
+                # Test orthogonality
+                assert_array_almost_equal(orthogonality(A, x), 0)
+                # Test if x is the least square solution
+                x = LS.matvec(z)
+                x2 = scipy.linalg.lstsq(At_dense, z)[0]
+                assert_array_almost_equal(x, x2)
+
+    def test_iterative_refinements_sparse(self):
+        A_dense = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                            [0, 8, 7, 0, 1, 5, 9, 0],
+                            [1, 0, 0, 0, 0, 1, 2, 3]])
+        A = csc_matrix(A_dense)
+        test_points = ([1, 2, 3, 4, 5, 6, 7, 8],
+                       [1, 10, 3, 0, 1, 6, 7, 8],
+                       [1.12, 10, 0, 0, 100000, 6, 0.7, 8],
+                       [1, 0, 0, 0, 0, 1, 2, 3+1e-10])
+
+        for method in available_sparse_methods:
+            Z, LS, _ = projections(A, method, orth_tol=1e-18, max_refin=100)
+            for z in test_points:
+                # Test if x is in the null_space
+                x = Z.matvec(z)
+                atol = 1e-13 * abs(x).max()
+                assert_allclose(A.dot(x), 0, atol=atol)
+                # Test orthogonality
+                assert_allclose(orthogonality(A, x), 0, atol=1e-13)
+
+    def test_rowspace_sparse(self):
+        A_dense = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                            [0, 8, 7, 0, 1, 5, 9, 0],
+                            [1, 0, 0, 0, 0, 1, 2, 3]])
+        A = csc_matrix(A_dense)
+        test_points = ([1, 2, 3],
+                       [1, 10, 3],
+                       [1.12, 10, 0])
+
+        for method in available_sparse_methods:
+            _, _, Y = projections(A, method)
+            for z in test_points:
+                # Test if x is solution of A x = z
+                x = Y.matvec(z)
+                assert_array_almost_equal(A.dot(x), z)
+                # Test if x is in the return row space of A
+                A_ext = np.vstack((A_dense, x))
+                assert_equal(np.linalg.matrix_rank(A_dense),
+                             np.linalg.matrix_rank(A_ext))
+
+    def test_nullspace_and_least_squares_dense(self):
+        A = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                      [0, 8, 7, 0, 1, 5, 9, 0],
+                      [1, 0, 0, 0, 0, 1, 2, 3]])
+        At = A.T
+        test_points = ([1, 2, 3, 4, 5, 6, 7, 8],
+                       [1, 10, 3, 0, 1, 6, 7, 8],
+                       [1.12, 10, 0, 0, 100000, 6, 0.7, 8])
+
+        for method in available_dense_methods:
+            Z, LS, _ = projections(A, method)
+            for z in test_points:
+                # Test if x is in the null_space
+                x = Z.matvec(z)
+                assert_array_almost_equal(A.dot(x), 0)
+                # Test orthogonality
+                assert_array_almost_equal(orthogonality(A, x), 0)
+                # Test if x is the least square solution
+                x = LS.matvec(z)
+                x2 = scipy.linalg.lstsq(At, z)[0]
+                assert_array_almost_equal(x, x2)
+
+    def test_compare_dense_and_sparse(self):
+        D = np.diag(range(1, 101))
+        A = np.hstack([D, D, D, D])
+        A_sparse = csc_matrix(A)
+        np.random.seed(0)
+
+        Z, LS, Y = projections(A)
+        Z_sparse, LS_sparse, Y_sparse = projections(A_sparse)
+        for k in range(20):
+            z = np.random.normal(size=(400,))
+            assert_array_almost_equal(Z.dot(z), Z_sparse.dot(z))
+            assert_array_almost_equal(LS.dot(z), LS_sparse.dot(z))
+            x = np.random.normal(size=(100,))
+            assert_array_almost_equal(Y.dot(x), Y_sparse.dot(x))
+
+    def test_compare_dense_and_sparse2(self):
+        D1 = np.diag([-1.7, 1, 0.5])
+        D2 = np.diag([1, -0.6, -0.3])
+        D3 = np.diag([-0.3, -1.5, 2])
+        A = np.hstack([D1, D2, D3])
+        A_sparse = csc_matrix(A)
+        np.random.seed(0)
+
+        Z, LS, Y = projections(A)
+        Z_sparse, LS_sparse, Y_sparse = projections(A_sparse)
+        for k in range(1):
+            z = np.random.normal(size=(9,))
+            assert_array_almost_equal(Z.dot(z), Z_sparse.dot(z))
+            assert_array_almost_equal(LS.dot(z), LS_sparse.dot(z))
+            x = np.random.normal(size=(3,))
+            assert_array_almost_equal(Y.dot(x), Y_sparse.dot(x))
+
+    def test_iterative_refinements_dense(self):
+        A = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                            [0, 8, 7, 0, 1, 5, 9, 0],
+                            [1, 0, 0, 0, 0, 1, 2, 3]])
+        test_points = ([1, 2, 3, 4, 5, 6, 7, 8],
+                       [1, 10, 3, 0, 1, 6, 7, 8],
+                       [1, 0, 0, 0, 0, 1, 2, 3+1e-10])
+
+        for method in available_dense_methods:
+            Z, LS, _ = projections(A, method, orth_tol=1e-18, max_refin=10)
+            for z in test_points:
+                # Test if x is in the null_space
+                x = Z.matvec(z)
+                assert_allclose(A.dot(x), 0, rtol=0, atol=2.5e-14)
+                # Test orthogonality
+                assert_allclose(orthogonality(A, x), 0, rtol=0, atol=5e-16)
+
+    def test_rowspace_dense(self):
+        A = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                      [0, 8, 7, 0, 1, 5, 9, 0],
+                      [1, 0, 0, 0, 0, 1, 2, 3]])
+        test_points = ([1, 2, 3],
+                       [1, 10, 3],
+                       [1.12, 10, 0])
+
+        for method in available_dense_methods:
+            _, _, Y = projections(A, method)
+            for z in test_points:
+                # Test if x is solution of A x = z
+                x = Y.matvec(z)
+                assert_array_almost_equal(A.dot(x), z)
+                # Test if x is in the return row space of A
+                A_ext = np.vstack((A, x))
+                assert_equal(np.linalg.matrix_rank(A),
+                             np.linalg.matrix_rank(A_ext))
+
+
+class TestOrthogonality(TestCase):
+
+    def test_dense_matrix(self):
+        A = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                      [0, 8, 7, 0, 1, 5, 9, 0],
+                      [1, 0, 0, 0, 0, 1, 2, 3]])
+        test_vectors = ([-1.98931144, -1.56363389,
+                         -0.84115584, 2.2864762,
+                         5.599141, 0.09286976,
+                         1.37040802, -0.28145812],
+                        [697.92794044, -4091.65114008,
+                         -3327.42316335, 836.86906951,
+                         99434.98929065, -1285.37653682,
+                         -4109.21503806, 2935.29289083])
+        test_expected_orth = (0, 0)
+
+        for i in range(len(test_vectors)):
+            x = test_vectors[i]
+            orth = test_expected_orth[i]
+            assert_array_almost_equal(orthogonality(A, x), orth)
+
+    def test_sparse_matrix(self):
+        A = np.array([[1, 2, 3, 4, 0, 5, 0, 7],
+                      [0, 8, 7, 0, 1, 5, 9, 0],
+                      [1, 0, 0, 0, 0, 1, 2, 3]])
+        A = csc_matrix(A)
+        test_vectors = ([-1.98931144, -1.56363389,
+                         -0.84115584, 2.2864762,
+                         5.599141, 0.09286976,
+                         1.37040802, -0.28145812],
+                        [697.92794044, -4091.65114008,
+                         -3327.42316335, 836.86906951,
+                         99434.98929065, -1285.37653682,
+                         -4109.21503806, 2935.29289083])
+        test_expected_orth = (0, 0)
+
+        for i in range(len(test_vectors)):
+            x = test_vectors[i]
+            orth = test_expected_orth[i]
+            assert_array_almost_equal(orthogonality(A, x), orth)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/tests/test_qp_subproblem.py

@@ -0,0 +1,645 @@
+import numpy as np
+from scipy.sparse import csc_matrix
+from scipy.optimize._trustregion_constr.qp_subproblem \
+    import (eqp_kktfact,
+            projected_cg,
+            box_intersections,
+            sphere_intersections,
+            box_sphere_intersections,
+            modified_dogleg)
+from scipy.optimize._trustregion_constr.projections \
+    import projections
+from numpy.testing import TestCase, assert_array_almost_equal, assert_equal
+import pytest
+
+
+class TestEQPDirectFactorization(TestCase):
+
+    # From Example 16.2 Nocedal/Wright "Numerical
+    # Optimization" p.452.
+    def test_nocedal_example(self):
+        H = csc_matrix([[6, 2, 1],
+                        [2, 5, 2],
+                        [1, 2, 4]])
+        A = csc_matrix([[1, 0, 1],
+                        [0, 1, 1]])
+        c = np.array([-8, -3, -3])
+        b = -np.array([3, 0])
+        x, lagrange_multipliers = eqp_kktfact(H, c, A, b)
+        assert_array_almost_equal(x, [2, -1, 1])
+        assert_array_almost_equal(lagrange_multipliers, [3, -2])
+
+
+class TestSphericalBoundariesIntersections(TestCase):
+
+    def test_2d_sphere_constraints(self):
+        # Interior inicial point
+        ta, tb, intersect = sphere_intersections([0, 0],
+                                                 [1, 0], 0.5)
+        assert_array_almost_equal([ta, tb], [0, 0.5])
+        assert_equal(intersect, True)
+
+        # No intersection between line and circle
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [0, 1], 1)
+        assert_equal(intersect, False)
+
+        # Outside initial point pointing toward outside the circle
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [1, 0], 1)
+        assert_equal(intersect, False)
+
+        # Outside initial point pointing toward inside the circle
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [-1, 0], 1.5)
+        assert_array_almost_equal([ta, tb], [0.5, 1])
+        assert_equal(intersect, True)
+
+        # Initial point on the boundary
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [1, 0], 2)
+        assert_array_almost_equal([ta, tb], [0, 0])
+        assert_equal(intersect, True)
+
+    def test_2d_sphere_constraints_line_intersections(self):
+        # Interior initial point
+        ta, tb, intersect = sphere_intersections([0, 0],
+                                                 [1, 0], 0.5,
+                                                 entire_line=True)
+        assert_array_almost_equal([ta, tb], [-0.5, 0.5])
+        assert_equal(intersect, True)
+
+        # No intersection between line and circle
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [0, 1], 1,
+                                                 entire_line=True)
+        assert_equal(intersect, False)
+
+        # Outside initial point pointing toward outside the circle
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [1, 0], 1,
+                                                 entire_line=True)
+        assert_array_almost_equal([ta, tb], [-3, -1])
+        assert_equal(intersect, True)
+
+        # Outside initial point pointing toward inside the circle
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [-1, 0], 1.5,
+                                                 entire_line=True)
+        assert_array_almost_equal([ta, tb], [0.5, 3.5])
+        assert_equal(intersect, True)
+
+        # Initial point on the boundary
+        ta, tb, intersect = sphere_intersections([2, 0],
+                                                 [1, 0], 2,
+                                                 entire_line=True)
+        assert_array_almost_equal([ta, tb], [-4, 0])
+        assert_equal(intersect, True)
+
+
+class TestBoxBoundariesIntersections(TestCase):
+
+    def test_2d_box_constraints(self):
+        # Box constraint in the direction of vector d
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [1, 1], [3, 3])
+        assert_array_almost_equal([ta, tb], [0.5, 1])
+        assert_equal(intersect, True)
+
+        # Negative direction
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [1, -3], [3, -1])
+        assert_equal(intersect, False)
+
+        # Some constraints are absent (set to +/- inf)
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-np.inf, 1],
+                                              [np.inf, np.inf])
+        assert_array_almost_equal([ta, tb], [0.5, 1])
+        assert_equal(intersect, True)
+
+        # Intersect on the face of the box
+        ta, tb, intersect = box_intersections([1, 0], [0, 1],
+                                              [1, 1], [3, 3])
+        assert_array_almost_equal([ta, tb], [1, 1])
+        assert_equal(intersect, True)
+
+        # Interior initial point
+        ta, tb, intersect = box_intersections([0, 0], [4, 4],
+                                              [-2, -3], [3, 2])
+        assert_array_almost_equal([ta, tb], [0, 0.5])
+        assert_equal(intersect, True)
+
+        # No intersection between line and box constraints
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-3, -3], [-1, -1])
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-3, 3], [-1, 1])
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-3, -np.inf],
+                                              [-1, np.inf])
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([0, 0], [1, 100],
+                                              [1, 1], [3, 3])
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([0.99, 0], [0, 2],
+                                                         [1, 1], [3, 3])
+        assert_equal(intersect, False)
+
+        # Initial point on the boundary
+        ta, tb, intersect = box_intersections([2, 2], [0, 1],
+                                              [-2, -2], [2, 2])
+        assert_array_almost_equal([ta, tb], [0, 0])
+        assert_equal(intersect, True)
+
+    def test_2d_box_constraints_entire_line(self):
+        # Box constraint in the direction of vector d
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [1, 1], [3, 3],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [0.5, 1.5])
+        assert_equal(intersect, True)
+
+        # Negative direction
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [1, -3], [3, -1],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [-1.5, -0.5])
+        assert_equal(intersect, True)
+
+        # Some constraints are absent (set to +/- inf)
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-np.inf, 1],
+                                              [np.inf, np.inf],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [0.5, np.inf])
+        assert_equal(intersect, True)
+
+        # Intersect on the face of the box
+        ta, tb, intersect = box_intersections([1, 0], [0, 1],
+                                              [1, 1], [3, 3],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [1, 3])
+        assert_equal(intersect, True)
+
+        # Interior initial pointoint
+        ta, tb, intersect = box_intersections([0, 0], [4, 4],
+                                              [-2, -3], [3, 2],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [-0.5, 0.5])
+        assert_equal(intersect, True)
+
+        # No intersection between line and box constraints
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-3, -3], [-1, -1],
+                                              entire_line=True)
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-3, 3], [-1, 1],
+                                              entire_line=True)
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([2, 0], [0, 2],
+                                              [-3, -np.inf],
+                                              [-1, np.inf],
+                                              entire_line=True)
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([0, 0], [1, 100],
+                                              [1, 1], [3, 3],
+                                              entire_line=True)
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_intersections([0.99, 0], [0, 2],
+                                              [1, 1], [3, 3],
+                                              entire_line=True)
+        assert_equal(intersect, False)
+
+        # Initial point on the boundary
+        ta, tb, intersect = box_intersections([2, 2], [0, 1],
+                                              [-2, -2], [2, 2],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [-4, 0])
+        assert_equal(intersect, True)
+
+    def test_3d_box_constraints(self):
+        # Simple case
+        ta, tb, intersect = box_intersections([1, 1, 0], [0, 0, 1],
+                                              [1, 1, 1], [3, 3, 3])
+        assert_array_almost_equal([ta, tb], [1, 1])
+        assert_equal(intersect, True)
+
+        # Negative direction
+        ta, tb, intersect = box_intersections([1, 1, 0], [0, 0, -1],
+                                              [1, 1, 1], [3, 3, 3])
+        assert_equal(intersect, False)
+
+        # Interior point
+        ta, tb, intersect = box_intersections([2, 2, 2], [0, -1, 1],
+                                              [1, 1, 1], [3, 3, 3])
+        assert_array_almost_equal([ta, tb], [0, 1])
+        assert_equal(intersect, True)
+
+    def test_3d_box_constraints_entire_line(self):
+        # Simple case
+        ta, tb, intersect = box_intersections([1, 1, 0], [0, 0, 1],
+                                              [1, 1, 1], [3, 3, 3],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [1, 3])
+        assert_equal(intersect, True)
+
+        # Negative direction
+        ta, tb, intersect = box_intersections([1, 1, 0], [0, 0, -1],
+                                              [1, 1, 1], [3, 3, 3],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [-3, -1])
+        assert_equal(intersect, True)
+
+        # Interior point
+        ta, tb, intersect = box_intersections([2, 2, 2], [0, -1, 1],
+                                              [1, 1, 1], [3, 3, 3],
+                                              entire_line=True)
+        assert_array_almost_equal([ta, tb], [-1, 1])
+        assert_equal(intersect, True)
+
+
+class TestBoxSphereBoundariesIntersections(TestCase):
+
+    def test_2d_box_constraints(self):
+        # Both constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-2, 2],
+                                                     [-1, -2], [1, 2], 2,
+                                                     entire_line=False)
+        assert_array_almost_equal([ta, tb], [0, 0.5])
+        assert_equal(intersect, True)
+
+        # None of the constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-1, 1],
+                                                     [-1, -3], [1, 3], 10,
+                                                     entire_line=False)
+        assert_array_almost_equal([ta, tb], [0, 1])
+        assert_equal(intersect, True)
+
+        # Box constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-4, 4],
+                                                     [-1, -3], [1, 3], 10,
+                                                     entire_line=False)
+        assert_array_almost_equal([ta, tb], [0, 0.5])
+        assert_equal(intersect, True)
+
+        # Spherical constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-4, 4],
+                                                     [-1, -3], [1, 3], 2,
+                                                     entire_line=False)
+        assert_array_almost_equal([ta, tb], [0, 0.25])
+        assert_equal(intersect, True)
+
+        # Infeasible problems
+        ta, tb, intersect = box_sphere_intersections([2, 2], [-4, 4],
+                                                     [-1, -3], [1, 3], 2,
+                                                     entire_line=False)
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-4, 4],
+                                                     [2, 4], [2, 4], 2,
+                                                     entire_line=False)
+        assert_equal(intersect, False)
+
+    def test_2d_box_constraints_entire_line(self):
+        # Both constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-2, 2],
+                                                     [-1, -2], [1, 2], 2,
+                                                     entire_line=True)
+        assert_array_almost_equal([ta, tb], [0, 0.5])
+        assert_equal(intersect, True)
+
+        # None of the constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-1, 1],
+                                                     [-1, -3], [1, 3], 10,
+                                                     entire_line=True)
+        assert_array_almost_equal([ta, tb], [0, 2])
+        assert_equal(intersect, True)
+
+        # Box constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-4, 4],
+                                                     [-1, -3], [1, 3], 10,
+                                                     entire_line=True)
+        assert_array_almost_equal([ta, tb], [0, 0.5])
+        assert_equal(intersect, True)
+
+        # Spherical constraints are active
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-4, 4],
+                                                     [-1, -3], [1, 3], 2,
+                                                     entire_line=True)
+        assert_array_almost_equal([ta, tb], [0, 0.25])
+        assert_equal(intersect, True)
+
+        # Infeasible problems
+        ta, tb, intersect = box_sphere_intersections([2, 2], [-4, 4],
+                                                     [-1, -3], [1, 3], 2,
+                                                     entire_line=True)
+        assert_equal(intersect, False)
+        ta, tb, intersect = box_sphere_intersections([1, 1], [-4, 4],
+                                                     [2, 4], [2, 4], 2,
+                                                     entire_line=True)
+        assert_equal(intersect, False)
+
+
+class TestModifiedDogleg(TestCase):
+
+    def test_cauchypoint_equalsto_newtonpoint(self):
+        A = np.array([[1, 8]])
+        b = np.array([-16])
+        _, _, Y = projections(A)
+        newton_point = np.array([0.24615385, 1.96923077])
+
+        # Newton point inside boundaries
+        x = modified_dogleg(A, Y, b, 2, [-np.inf, -np.inf], [np.inf, np.inf])
+        assert_array_almost_equal(x, newton_point)
+
+        # Spherical constraint active
+        x = modified_dogleg(A, Y, b, 1, [-np.inf, -np.inf], [np.inf, np.inf])
+        assert_array_almost_equal(x, newton_point/np.linalg.norm(newton_point))
+
+        # Box constraints active
+        x = modified_dogleg(A, Y, b, 2, [-np.inf, -np.inf], [0.1, np.inf])
+        assert_array_almost_equal(x, (newton_point/newton_point[0]) * 0.1)
+
+    def test_3d_example(self):
+        A = np.array([[1, 8, 1],
+                      [4, 2, 2]])
+        b = np.array([-16, 2])
+        Z, LS, Y = projections(A)
+
+        newton_point = np.array([-1.37090909, 2.23272727, -0.49090909])
+        cauchy_point = np.array([0.11165723, 1.73068711, 0.16748585])
+        origin = np.zeros_like(newton_point)
+
+        # newton_point inside boundaries
+        x = modified_dogleg(A, Y, b, 3, [-np.inf, -np.inf, -np.inf],
+                            [np.inf, np.inf, np.inf])
+        assert_array_almost_equal(x, newton_point)
+
+        # line between cauchy_point and newton_point contains best point
+        # (spherical constraint is active).
+        x = modified_dogleg(A, Y, b, 2, [-np.inf, -np.inf, -np.inf],
+                            [np.inf, np.inf, np.inf])
+        z = cauchy_point
+        d = newton_point-cauchy_point
+        t = ((x-z)/(d))
+        assert_array_almost_equal(t, np.full(3, 0.40807330))
+        assert_array_almost_equal(np.linalg.norm(x), 2)
+
+        # line between cauchy_point and newton_point contains best point
+        # (box constraint is active).
+        x = modified_dogleg(A, Y, b, 5, [-1, -np.inf, -np.inf],
+                            [np.inf, np.inf, np.inf])
+        z = cauchy_point
+        d = newton_point-cauchy_point
+        t = ((x-z)/(d))
+        assert_array_almost_equal(t, np.full(3, 0.7498195))
+        assert_array_almost_equal(x[0], -1)
+
+        # line between origin and cauchy_point contains best point
+        # (spherical constraint is active).
+        x = modified_dogleg(A, Y, b, 1, [-np.inf, -np.inf, -np.inf],
+                            [np.inf, np.inf, np.inf])
+        z = origin
+        d = cauchy_point
+        t = ((x-z)/(d))
+        assert_array_almost_equal(t, np.full(3, 0.573936265))
+        assert_array_almost_equal(np.linalg.norm(x), 1)
+
+        # line between origin and newton_point contains best point
+        # (box constraint is active).
+        x = modified_dogleg(A, Y, b, 2, [-np.inf, -np.inf, -np.inf],
+                            [np.inf, 1, np.inf])
+        z = origin
+        d = newton_point
+        t = ((x-z)/(d))
+        assert_array_almost_equal(t, np.full(3, 0.4478827364))
+        assert_array_almost_equal(x[1], 1)
+
+
+class TestProjectCG(TestCase):
+
+    # From Example 16.2 Nocedal/Wright "Numerical
+    # Optimization" p.452.
+    def test_nocedal_example(self):
+        H = csc_matrix([[6, 2, 1],
+                        [2, 5, 2],
+                        [1, 2, 4]])
+        A = csc_matrix([[1, 0, 1],
+                        [0, 1, 1]])
+        c = np.array([-8, -3, -3])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b)
+        assert_equal(info["stop_cond"], 4)
+        assert_equal(info["hits_boundary"], False)
+        assert_array_almost_equal(x, [2, -1, 1])
+
+    def test_compare_with_direct_fact(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b, tol=0)
+        x_kkt, _ = eqp_kktfact(H, c, A, b)
+        assert_equal(info["stop_cond"], 1)
+        assert_equal(info["hits_boundary"], False)
+        assert_array_almost_equal(x, x_kkt)
+
+    def test_trust_region_infeasible(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        trust_radius = 1
+        Z, _, Y = projections(A)
+        with pytest.raises(ValueError):
+            projected_cg(H, c, Z, Y, b, trust_radius=trust_radius)
+
+    def test_trust_region_barely_feasible(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        trust_radius = 2.32379000772445021283
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               trust_radius=trust_radius)
+        assert_equal(info["stop_cond"], 2)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(np.linalg.norm(x), trust_radius)
+        assert_array_almost_equal(x, -Y.dot(b))
+
+    def test_hits_boundary(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        trust_radius = 3
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               trust_radius=trust_radius)
+        assert_equal(info["stop_cond"], 2)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(np.linalg.norm(x), trust_radius)
+
+    def test_negative_curvature_unconstrained(self):
+        H = csc_matrix([[1, 2, 1, 3],
+                        [2, 0, 2, 4],
+                        [1, 2, 0, 2],
+                        [3, 4, 2, 0]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 0, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        with pytest.raises(ValueError):
+            projected_cg(H, c, Z, Y, b, tol=0)
+
+    def test_negative_curvature(self):
+        H = csc_matrix([[1, 2, 1, 3],
+                        [2, 0, 2, 4],
+                        [1, 2, 0, 2],
+                        [3, 4, 2, 0]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 0, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        trust_radius = 1000
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               trust_radius=trust_radius)
+        assert_equal(info["stop_cond"], 3)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(np.linalg.norm(x), trust_radius)
+
+    # The box constraints are inactive at the solution but
+    # are active during the iterations.
+    def test_inactive_box_constraints(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               lb=[0.5, -np.inf,
+                                   -np.inf, -np.inf],
+                               return_all=True)
+        x_kkt, _ = eqp_kktfact(H, c, A, b)
+        assert_equal(info["stop_cond"], 1)
+        assert_equal(info["hits_boundary"], False)
+        assert_array_almost_equal(x, x_kkt)
+
+    # The box constraints active and the termination is
+    # by maximum iterations (infeasible interaction).
+    def test_active_box_constraints_maximum_iterations_reached(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               lb=[0.8, -np.inf,
+                                   -np.inf, -np.inf],
+                               return_all=True)
+        assert_equal(info["stop_cond"], 1)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(A.dot(x), -b)
+        assert_array_almost_equal(x[0], 0.8)
+
+    # The box constraints are active and the termination is
+    # because it hits boundary (without infeasible interaction).
+    def test_active_box_constraints_hits_boundaries(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        trust_radius = 3
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               ub=[np.inf, np.inf, 1.6, np.inf],
+                               trust_radius=trust_radius,
+                               return_all=True)
+        assert_equal(info["stop_cond"], 2)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(x[2], 1.6)
+
+    # The box constraints are active and the termination is
+    # because it hits boundary (infeasible interaction).
+    def test_active_box_constraints_hits_boundaries_infeasible_iter(self):
+        H = csc_matrix([[6, 2, 1, 3],
+                        [2, 5, 2, 4],
+                        [1, 2, 4, 5],
+                        [3, 4, 5, 7]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 1, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        trust_radius = 4
+        Z, _, Y = projections(A)
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               ub=[np.inf, 0.1, np.inf, np.inf],
+                               trust_radius=trust_radius,
+                               return_all=True)
+        assert_equal(info["stop_cond"], 2)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(x[1], 0.1)
+
+    # The box constraints are active and the termination is
+    # because it hits boundary (no infeasible interaction).
+    def test_active_box_constraints_negative_curvature(self):
+        H = csc_matrix([[1, 2, 1, 3],
+                        [2, 0, 2, 4],
+                        [1, 2, 0, 2],
+                        [3, 4, 2, 0]])
+        A = csc_matrix([[1, 0, 1, 0],
+                        [0, 1, 0, 1]])
+        c = np.array([-2, -3, -3, 1])
+        b = -np.array([3, 0])
+        Z, _, Y = projections(A)
+        trust_radius = 1000
+        x, info = projected_cg(H, c, Z, Y, b,
+                               tol=0,
+                               ub=[np.inf, np.inf, 100, np.inf],
+                               trust_radius=trust_radius)
+        assert_equal(info["stop_cond"], 3)
+        assert_equal(info["hits_boundary"], True)
+        assert_array_almost_equal(x[2], 100)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/tests/test_report.py

@@ -0,0 +1,32 @@
+import numpy as np
+from scipy.optimize import minimize, Bounds
+
+def test_gh10880():
+    # checks that verbose reporting works with trust-constr for
+    # bound-contrained problems
+    bnds = Bounds(1, 2)
+    opts = {'maxiter': 1000, 'verbose': 2}
+    minimize(lambda x: x**2, x0=2., method='trust-constr',
+             bounds=bnds, options=opts)
+
+    opts = {'maxiter': 1000, 'verbose': 3}
+    minimize(lambda x: x**2, x0=2., method='trust-constr',
+             bounds=bnds, options=opts)
+
+def test_gh12922():
+    # checks that verbose reporting works with trust-constr for
+    # general constraints
+    def objective(x):
+        return np.array([(np.sum((x+1)**4))])
+
+    cons = {'type': 'ineq', 'fun': lambda x: -x[0]**2}
+    n = 25
+    x0 = np.linspace(-5, 5, n)
+
+    opts = {'maxiter': 1000, 'verbose': 2}
+    minimize(objective, x0=x0, method='trust-constr',
+                      constraints=cons, options=opts)
+
+    opts = {'maxiter': 1000, 'verbose': 3}
+    minimize(objective, x0=x0, method='trust-constr',
+                      constraints=cons, options=opts)

env-llmeval/lib/python3.10/site-packages/scipy/optimize/_trustregion_constr/tr_interior_point.py

@@ -0,0 +1,346 @@
+"""Trust-region interior point method.
+
+References
+----------
+.. [1] Byrd, Richard H., Mary E. Hribar, and Jorge Nocedal.
+       "An interior point algorithm for large-scale nonlinear
+       programming." SIAM Journal on Optimization 9.4 (1999): 877-900.
+.. [2] Byrd, Richard H., Guanghui Liu, and Jorge Nocedal.
+       "On the local behavior of an interior point method for
+       nonlinear programming." Numerical analysis 1997 (1997): 37-56.
+.. [3] Nocedal, Jorge, and Stephen J. Wright. "Numerical optimization"
+       Second Edition (2006).
+"""
+
+import scipy.sparse as sps
+import numpy as np
+from .equality_constrained_sqp import equality_constrained_sqp
+from scipy.sparse.linalg import LinearOperator
+
+__all__ = ['tr_interior_point']
+
+
+class BarrierSubproblem:
+    """
+    Barrier optimization problem:
+        minimize fun(x) - barrier_parameter*sum(log(s))
+        subject to: constr_eq(x)     = 0
+                  constr_ineq(x) + s = 0
+    """
+
+    def __init__(self, x0, s0, fun, grad, lagr_hess, n_vars, n_ineq, n_eq,
+                 constr, jac, barrier_parameter, tolerance,
+                 enforce_feasibility, global_stop_criteria,
+                 xtol, fun0, grad0, constr_ineq0, jac_ineq0, constr_eq0,
+                 jac_eq0):
+        # Store parameters
+        self.n_vars = n_vars
+        self.x0 = x0
+        self.s0 = s0
+        self.fun = fun
+        self.grad = grad
+        self.lagr_hess = lagr_hess
+        self.constr = constr
+        self.jac = jac
+        self.barrier_parameter = barrier_parameter
+        self.tolerance = tolerance
+        self.n_eq = n_eq
+        self.n_ineq = n_ineq
+        self.enforce_feasibility = enforce_feasibility
+        self.global_stop_criteria = global_stop_criteria
+        self.xtol = xtol
+        self.fun0 = self._compute_function(fun0, constr_ineq0, s0)
+        self.grad0 = self._compute_gradient(grad0)
+        self.constr0 = self._compute_constr(constr_ineq0, constr_eq0, s0)
+        self.jac0 = self._compute_jacobian(jac_eq0, jac_ineq0, s0)
+        self.terminate = False
+
+    def update(self, barrier_parameter, tolerance):
+        self.barrier_parameter = barrier_parameter
+        self.tolerance = tolerance
+
+    def get_slack(self, z):
+        return z[self.n_vars:self.n_vars+self.n_ineq]
+
+    def get_variables(self, z):
+        return z[:self.n_vars]
+
+    def function_and_constraints(self, z):
+        """Returns barrier function and constraints at given point.
+
+        For z = [x, s], returns barrier function:
+            function(z) = fun(x) - barrier_parameter*sum(log(s))
+        and barrier constraints:
+            constraints(z) = [   constr_eq(x)     ]
+                             [ constr_ineq(x) + s ]
+
+        """
+        # Get variables and slack variables
+        x = self.get_variables(z)
+        s = self.get_slack(z)
+        # Compute function and constraints
+        f = self.fun(x)
+        c_eq, c_ineq = self.constr(x)
+        # Return objective function and constraints
+        return (self._compute_function(f, c_ineq, s),
+                self._compute_constr(c_ineq, c_eq, s))
+
+    def _compute_function(self, f, c_ineq, s):
+        # Use technique from Nocedal and Wright book, ref [3]_, p.576,
+        # to guarantee constraints from `enforce_feasibility`
+        # stay feasible along iterations.
+        s[self.enforce_feasibility] = -c_ineq[self.enforce_feasibility]
+        log_s = [np.log(s_i) if s_i > 0 else -np.inf for s_i in s]
+        # Compute barrier objective function
+        return f - self.barrier_parameter*np.sum(log_s)
+
+    def _compute_constr(self, c_ineq, c_eq, s):
+        # Compute barrier constraint
+        return np.hstack((c_eq,
+                          c_ineq + s))
+
+    def scaling(self, z):
+        """Returns scaling vector.
+        Given by:
+            scaling = [ones(n_vars), s]
+        """
+        s = self.get_slack(z)
+        diag_elements = np.hstack((np.ones(self.n_vars), s))
+
+        # Diagonal matrix
+        def matvec(vec):
+            return diag_elements*vec
+        return LinearOperator((self.n_vars+self.n_ineq,
+                               self.n_vars+self.n_ineq),
+                              matvec)
+
+    def gradient_and_jacobian(self, z):
+        """Returns scaled gradient.
+
+        Return scaled gradient:
+            gradient = [             grad(x)             ]
+                       [ -barrier_parameter*ones(n_ineq) ]
+        and scaled Jacobian matrix:
+            jacobian = [  jac_eq(x)  0  ]
+                       [ jac_ineq(x) S  ]
+        Both of them scaled by the previously defined scaling factor.
+        """
+        # Get variables and slack variables
+        x = self.get_variables(z)
+        s = self.get_slack(z)
+        # Compute first derivatives
+        g = self.grad(x)
+        J_eq, J_ineq = self.jac(x)
+        # Return gradient and Jacobian
+        return (self._compute_gradient(g),
+                self._compute_jacobian(J_eq, J_ineq, s))
+
+    def _compute_gradient(self, g):
+        return np.hstack((g, -self.barrier_parameter*np.ones(self.n_ineq)))
+
+    def _compute_jacobian(self, J_eq, J_ineq, s):
+        if self.n_ineq == 0:
+            return J_eq
+        else:
+            if sps.issparse(J_eq) or sps.issparse(J_ineq):
+                # It is expected that J_eq and J_ineq
+                # are already `csr_matrix` because of
+                # the way ``BoxConstraint``, ``NonlinearConstraint``
+                # and ``LinearConstraint`` are defined.
+                J_eq = sps.csr_matrix(J_eq)
+                J_ineq = sps.csr_matrix(J_ineq)
+                return self._assemble_sparse_jacobian(J_eq, J_ineq, s)
+            else:
+                S = np.diag(s)
+                zeros = np.zeros((self.n_eq, self.n_ineq))
+                # Convert to matrix
+                if sps.issparse(J_ineq):
+                    J_ineq = J_ineq.toarray()
+                if sps.issparse(J_eq):
+                    J_eq = J_eq.toarray()
+                # Concatenate matrices
+                return np.block([[J_eq, zeros],
+                                 [J_ineq, S]])
+
+    def _assemble_sparse_jacobian(self, J_eq, J_ineq, s):
+        """Assemble sparse Jacobian given its components.
+
+        Given ``J_eq``, ``J_ineq`` and ``s`` returns:
+            jacobian = [ J_eq,     0     ]
+                       [ J_ineq, diag(s) ]
+
+        It is equivalent to:
+            sps.bmat([[ J_eq,   None    ],
+                      [ J_ineq, diag(s) ]], "csr")
+        but significantly more efficient for this
+        given structure.
+        """
+        n_vars, n_ineq, n_eq = self.n_vars, self.n_ineq, self.n_eq
+        J_aux = sps.vstack([J_eq, J_ineq], "csr")
+        indptr, indices, data = J_aux.indptr, J_aux.indices, J_aux.data
+        new_indptr = indptr + np.hstack((np.zeros(n_eq, dtype=int),
+                                         np.arange(n_ineq+1, dtype=int)))
+        size = indices.size+n_ineq
+        new_indices = np.empty(size)
+        new_data = np.empty(size)
+        mask = np.full(size, False, bool)
+        mask[new_indptr[-n_ineq:]-1] = True
+        new_indices[mask] = n_vars+np.arange(n_ineq)
+        new_indices[~mask] = indices
+        new_data[mask] = s
+        new_data[~mask] = data
+        J = sps.csr_matrix((new_data, new_indices, new_indptr),
+                           (n_eq + n_ineq, n_vars + n_ineq))
+        return J
+
+    def lagrangian_hessian_x(self, z, v):
+        """Returns Lagrangian Hessian (in relation to `x`) -> Hx"""
+        x = self.get_variables(z)
+        # Get lagrange multipliers related to nonlinear equality constraints
+        v_eq = v[:self.n_eq]
+        # Get lagrange multipliers related to nonlinear ineq. constraints
+        v_ineq = v[self.n_eq:self.n_eq+self.n_ineq]
+        lagr_hess = self.lagr_hess
+        return lagr_hess(x, v_eq, v_ineq)
+
+    def lagrangian_hessian_s(self, z, v):
+        """Returns scaled Lagrangian Hessian (in relation to`s`) -> S Hs S"""
+        s = self.get_slack(z)
+        # Using the primal formulation:
+        #     S Hs S = diag(s)*diag(barrier_parameter/s**2)*diag(s).
+        # Reference [1]_ p. 882, formula (3.1)
+        primal = self.barrier_parameter
+        # Using the primal-dual formulation
+        #     S Hs S = diag(s)*diag(v/s)*diag(s)
+        # Reference [1]_ p. 883, formula (3.11)
+        primal_dual = v[-self.n_ineq:]*s
+        # Uses the primal-dual formulation for
+        # positives values of v_ineq, and primal
+        # formulation for the remaining ones.
+        return np.where(v[-self.n_ineq:] > 0, primal_dual, primal)
+
+    def lagrangian_hessian(self, z, v):
+        """Returns scaled Lagrangian Hessian"""
+        # Compute Hessian in relation to x and s
+        Hx = self.lagrangian_hessian_x(z, v)
+        if self.n_ineq > 0:
+            S_Hs_S = self.lagrangian_hessian_s(z, v)
+
+        # The scaled Lagragian Hessian is:
+        #     [ Hx    0    ]
+        #     [ 0   S Hs S ]
+        def matvec(vec):
+            vec_x = self.get_variables(vec)
+            vec_s = self.get_slack(vec)
+            if self.n_ineq > 0:
+                return np.hstack((Hx.dot(vec_x), S_Hs_S*vec_s))
+            else:
+                return Hx.dot(vec_x)
+        return LinearOperator((self.n_vars+self.n_ineq,
+                               self.n_vars+self.n_ineq),
+                              matvec)
+
+    def stop_criteria(self, state, z, last_iteration_failed,
+                      optimality, constr_violation,
+                      trust_radius, penalty, cg_info):
+        """Stop criteria to the barrier problem.
+        The criteria here proposed is similar to formula (2.3)
+        from [1]_, p.879.
+        """
+        x = self.get_variables(z)
+        if self.global_stop_criteria(state, x,
+                                     last_iteration_failed,
+                                     trust_radius, penalty,
+                                     cg_info,
+                                     self.barrier_parameter,
+                                     self.tolerance):
+            self.terminate = True
+            return True
+        else:
+            g_cond = (optimality < self.tolerance and
+                      constr_violation < self.tolerance)
+            x_cond = trust_radius < self.xtol
+            return g_cond or x_cond
+
+
+def tr_interior_point(fun, grad, lagr_hess, n_vars, n_ineq, n_eq,
+                      constr, jac, x0, fun0, grad0,
+                      constr_ineq0, jac_ineq0, constr_eq0,
+                      jac_eq0, stop_criteria,
+                      enforce_feasibility, xtol, state,
+                      initial_barrier_parameter,
+                      initial_tolerance,
+                      initial_penalty,
+                      initial_trust_radius,
+                      factorization_method):
+    """Trust-region interior points method.
+
+    Solve problem:
+        minimize fun(x)
+        subject to: constr_ineq(x) <= 0
+                    constr_eq(x) = 0
+    using trust-region interior point method described in [1]_.
+    """
+    # BOUNDARY_PARAMETER controls the decrease on the slack
+    # variables. Represents ``tau`` from [1]_ p.885, formula (3.18).
+    BOUNDARY_PARAMETER = 0.995
+    # BARRIER_DECAY_RATIO controls the decay of the barrier parameter
+    # and of the subproblem toloerance. Represents ``theta`` from [1]_ p.879.
+    BARRIER_DECAY_RATIO = 0.2
+    # TRUST_ENLARGEMENT controls the enlargement on trust radius
+    # after each iteration
+    TRUST_ENLARGEMENT = 5
+
+    # Default enforce_feasibility
+    if enforce_feasibility is None:
+        enforce_feasibility = np.zeros(n_ineq, bool)
+    # Initial Values
+    barrier_parameter = initial_barrier_parameter
+    tolerance = initial_tolerance
+    trust_radius = initial_trust_radius
+    # Define initial value for the slack variables
+    s0 = np.maximum(-1.5*constr_ineq0, np.ones(n_ineq))
+    # Define barrier subproblem
+    subprob = BarrierSubproblem(
+        x0, s0, fun, grad, lagr_hess, n_vars, n_ineq, n_eq, constr, jac,
+        barrier_parameter, tolerance, enforce_feasibility,
+        stop_criteria, xtol, fun0, grad0, constr_ineq0, jac_ineq0,
+        constr_eq0, jac_eq0)
+    # Define initial parameter for the first iteration.
+    z = np.hstack((x0, s0))
+    fun0_subprob, constr0_subprob = subprob.fun0, subprob.constr0
+    grad0_subprob, jac0_subprob = subprob.grad0, subprob.jac0
+    # Define trust region bounds
+    trust_lb = np.hstack((np.full(subprob.n_vars, -np.inf),
+                          np.full(subprob.n_ineq, -BOUNDARY_PARAMETER)))
+    trust_ub = np.full(subprob.n_vars+subprob.n_ineq, np.inf)
+
+    # Solves a sequence of barrier problems
+    while True:
+        # Solve SQP subproblem
+        z, state = equality_constrained_sqp(
+            subprob.function_and_constraints,
+            subprob.gradient_and_jacobian,
+            subprob.lagrangian_hessian,
+            z, fun0_subprob, grad0_subprob,
+            constr0_subprob, jac0_subprob, subprob.stop_criteria,
+            state, initial_penalty, trust_radius,
+            factorization_method, trust_lb, trust_ub, subprob.scaling)
+        if subprob.terminate:
+            break
+        # Update parameters
+        trust_radius = max(initial_trust_radius,
+                           TRUST_ENLARGEMENT*state.tr_radius)
+        # TODO: Use more advanced strategies from [2]_
+        # to update this parameters.
+        barrier_parameter *= BARRIER_DECAY_RATIO
+        tolerance *= BARRIER_DECAY_RATIO
+        # Update Barrier Problem
+        subprob.update(barrier_parameter, tolerance)
+        # Compute initial values for next iteration
+        fun0_subprob, constr0_subprob = subprob.function_and_constraints(z)
+        grad0_subprob, jac0_subprob = subprob.gradient_and_jacobian(z)
+
+    # Get x and s
+    x = subprob.get_variables(z)
+    return x, state