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#!/bin/bash
set -e
trap cleanup_on_error ERR SIGINT SIGTERM
cleanup_on_error() {
echo "Error: $0:$LINENO: command \`$BASH_COMMAND\` failed with exit code $?"
exit 1
}
while [[ $# -gt 0 ]]; do
key="$1"
case $key in
--config)
CONFIG_FILE="$2"
shift
shift
;;
--input_base_uri)
INPUT_BASE_URI="$2"
shift
shift
;;
--output_dir)
OUTPUT_DIR="$2"
shift
shift
;;
--similarity)
SIMILARITY="$2"
shift
shift
;;
--listings)
LISTINGS="$2"
shift
shift
;;
--max_docs)
MAX_DOCS="$2"
shift
shift
;;
*)
echo "Invalid option: -$OPTARG" >&2
;;
esac
done
# make environment variables available to downstream scripts
set -a
# shellcheck source=configs/base.conf
. "$CONFIG_FILE"
set +a
# run pipeline
apptainer run --memory 480g "${DOCKER_REPO}" \
python3 src/run_lsh.py \
--listings "${LISTINGS}" \
--input_base_uri "${INPUT_BASE_URI}" \
--output_dir "${OUTPUT_DIR}" \
--similarity "${SIMILARITY}" \
--num_perm "${MINHASH_NUM_PERMUTATIONS}" \
--max_docs ${MAX_DOCS}
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