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731k
| package
stringlengths 2
98
⌀ | name
stringlengths 1
76
| docstring
stringlengths 0
281k
⌀ | code
stringlengths 4
8.19k
| signature
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42.8k
⌀ | embed_func_code
listlengths 768
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28,422 | sqlobject.main | __classinit__ | null | def __classinit__(cls, new_attrs):
for attr in cls._unshared_attributes:
if attr not in new_attrs:
setattr(cls, attr, None)
declarative.setup_attributes(cls, new_attrs)
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|
28,423 | sqlobject.main | __init__ | null | def __init__(self, instance):
self.instance = weakref.proxy(instance)
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|
28,424 | sqlobject.main | asDict |
Return the object as a dictionary of columns to values.
| def asDict(self):
"""
Return the object as a dictionary of columns to values.
"""
result = {}
for key in self.getColumns():
result[key] = getattr(self.instance, key)
result['id'] = self.instance.id
return result
| (self) | [
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|
28,428 | sqlobject.col | use_microseconds | null | def use_microseconds(use=True):
if use:
SODateTimeCol.datetimeFormat = '%Y-%m-%d %H:%M:%S.%f'
SOTimeCol.timeFormat = '%H:%M:%S.%f'
dt_types = [(datetime.datetime, converters.DateTimeConverterMS),
(datetime.time, converters.TimeConverterMS)]
else:
SODateTimeCol.datetimeFormat = '%Y-%m-%d %H:%M:%S'
SOTimeCol.timeFormat = '%H:%M:%S'
dt_types = [(datetime.datetime, converters.DateTimeConverter),
(datetime.time, converters.TimeConverter)]
for dt_type, converter in dt_types:
converters.registerConverter(dt_type, converter)
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|
28,430 | func2argparse | LoadFromFile | null | class LoadFromFile(argparse.Action):
def __init__(self, unmatched_args="error", *args, **kwargs):
super().__init__(*args, **kwargs)
if unmatched_args not in ("error", "warning"):
raise RuntimeError("unmatched_args can only be set to error or warning")
self.unmatched_args = unmatched_args
def _error_unfound(self, key, namespace):
if key not in namespace:
if self.unmatched_args == "error":
raise ValueError(f"Unknown argument in config file: {key}")
elif self.unmatched_args == "warning":
print(f"WARNING: Unknown argument in config file: {key}")
# parser.add_argument('--file', type=open, action=LoadFromFile)
def __call__(self, parser, namespace, values, option_string=None):
import yaml
import json
if values.name.endswith("yaml") or values.name.endswith("yml"):
with values as f:
config = yaml.load(f, Loader=yaml.FullLoader)
for key in config.keys():
self._error_unfound(key, namespace)
namespace.__dict__.update(config)
elif values.name.endswith("json"):
with values as f:
config = json.load(f)
if "execid" in config and "params" in config:
# Special case for PlayMolecule
config = config["params"]
for prm in config:
key = prm["name"]
self._error_unfound(key, namespace)
namespace.__dict__[key] = prm["value"]
else:
# General use case similar to yaml above
for key in config.keys():
self._error_unfound(key, namespace)
namespace.__dict__.update(config)
else:
raise ValueError("Configuration file must end with yaml or yml")
| (unmatched_args='error', *args, **kwargs) | [
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|
28,431 | func2argparse | __call__ | null | def __call__(self, parser, namespace, values, option_string=None):
import yaml
import json
if values.name.endswith("yaml") or values.name.endswith("yml"):
with values as f:
config = yaml.load(f, Loader=yaml.FullLoader)
for key in config.keys():
self._error_unfound(key, namespace)
namespace.__dict__.update(config)
elif values.name.endswith("json"):
with values as f:
config = json.load(f)
if "execid" in config and "params" in config:
# Special case for PlayMolecule
config = config["params"]
for prm in config:
key = prm["name"]
self._error_unfound(key, namespace)
namespace.__dict__[key] = prm["value"]
else:
# General use case similar to yaml above
for key in config.keys():
self._error_unfound(key, namespace)
namespace.__dict__.update(config)
else:
raise ValueError("Configuration file must end with yaml or yml")
| (self, parser, namespace, values, option_string=None) | [
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|
28,432 | func2argparse | __init__ | null | def __init__(self, unmatched_args="error", *args, **kwargs):
super().__init__(*args, **kwargs)
if unmatched_args not in ("error", "warning"):
raise RuntimeError("unmatched_args can only be set to error or warning")
self.unmatched_args = unmatched_args
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|
28,434 | func2argparse | _error_unfound | null | def _error_unfound(self, key, namespace):
if key not in namespace:
if self.unmatched_args == "error":
raise ValueError(f"Unknown argument in config file: {key}")
elif self.unmatched_args == "warning":
print(f"WARNING: Unknown argument in config file: {key}")
| (self, key, namespace) | [
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|
28,439 | func2argparse | _get_name_abbreviations | null | def _get_name_abbreviations(argnames):
abbrevs = {"help": "h"}
def get_abbr(name):
pieces = name.split("_")
for i in range(len(pieces)):
yield "".join([p[0] for p in pieces[: i + 1]])
# Last attempt
name = name.replace("_", "")
for i in range(1, len(name) + 1):
yield name[:i]
for argname in argnames:
if argname[0] == "_":
continue # Don't add underscore arguments to argparser
for abb in get_abbr(argname):
if abb not in abbrevs.values():
abbrevs[argname] = abb
break
return abbrevs
| (argnames) | [
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|
28,440 | func2argparse | _parse_docs | null | def _parse_docs(doc):
import re
from ast import literal_eval
reg1 = re.compile(r"^(\S+)\s*:")
reg2 = re.compile(r"choices=([\(\[].*[\)\]])")
reg3 = re.compile(r"gui_options=(.*)")
reg4 = re.compile(r"nargs=(\d+)")
lines = doc.splitlines()
name = lines[0].strip().split()[0]
description = []
for line in lines[1:]:
if line.strip().startswith("Parameters"):
break
if len(line.strip()):
description.append(line.strip())
description = " ".join(description)
argdocs = OrderedDict()
currvar = None
paramsection = False
for i in range(len(lines)):
line = lines[i].strip()
if paramsection:
if reg1.match(line):
currvar = reg1.findall(line)[0]
argdocs[currvar] = {"doc": "", "choices": None}
choices = reg2.findall(line)
if len(choices):
argdocs[currvar]["choices"] = literal_eval(choices[0])
gui_options = reg3.findall(line)
if len(gui_options):
argdocs[currvar]["gui_options"] = literal_eval(gui_options[0])
nargs = reg4.findall(line)
if len(nargs):
argdocs[currvar]["nargs"] = int(nargs[0])
elif currvar is not None:
# Everything after the initial variable line counts as help
argdocs[currvar]["doc"] += line + " "
if line.startswith("Parameters"):
paramsection = True
if paramsection and line == "":
paramsection = False
return argdocs, description, name
| (doc) | [
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|
28,443 | func2argparse | func_to_argparser | null | def func_to_argparser(
func, exit_on_error=True, allow_conf_yaml=False, unmatched_args="error"
):
import inspect
from typing import get_origin, get_args
sig = inspect.signature(func)
doc = func.__doc__
if doc is None:
raise RuntimeError("Could not find documentation in the function...")
argdocs, description, name = _parse_docs(doc)
try:
parser = argparse.ArgumentParser(
name,
description=description,
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
exit_on_error=exit_on_error,
)
except Exception:
parser = argparse.ArgumentParser(
name,
description=description,
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
)
if allow_conf_yaml:
parser.add_argument(
"--conf",
help="Configuration YAML file to set all parameters",
type=open,
action=lambda *x, **y: LoadFromFile(*x, **y, unmatched_args=unmatched_args),
)
# Calculate abbreviations
abbrevs = _get_name_abbreviations(sig.parameters)
for argname in sig.parameters:
if argname[0] == "_" or argname in ("args", "kwargs"):
continue # Don't add underscore arguments to argparser or args, kwargs
params = sig.parameters[argname]
if argname not in argdocs:
raise RuntimeError(
f"Could not find help for argument {argname} in the docstring of the function. Please document it."
)
argtype = params.annotation
nargs = None
# This is needed for compound types like: list[str]
if get_origin(params.annotation) is not None:
origtype = get_origin(params.annotation)
argtype = get_args(params.annotation)[0]
if origtype in (list, tuple):
nargs = "+"
default = None
if params.default != inspect._empty:
default = params.default
# Don't allow empty list defaults., convert to None
if type(default) in (list, tuple) and len(default) == 0:
raise RuntimeError(
f"Please don't use empty tuples/lists as default arguments (e.g. {argname}=()). Use =None instead"
)
if type(argtype) == tuple:
raise RuntimeError(
f"Failed to get type annotation for argument '{argname}'"
)
if argtype == bool:
if nargs is None:
if default:
raise RuntimeError(
"func2argparse does not allow boolean flags with default value True"
)
parser.add_argument(
f"--{argname.replace('_', '-')}",
f"-{abbrevs[argname]}",
help=argdocs[argname]["doc"].strip(),
action="store_true",
)
else:
parser.add_argument(
f"--{argname.replace('_', '-')}",
f"-{abbrevs[argname]}",
help=argdocs[argname]["doc"].strip(),
default=default,
type=str_to_bool,
required=params.default == inspect._empty,
nargs=nargs,
)
else:
help = argdocs[argname]["doc"].strip()
choices = argdocs[argname]["choices"]
parser.add_argument(
f"--{argname.replace('_', '-')}",
f"-{abbrevs[argname]}",
help=help,
default=default,
type=argtype,
choices=choices,
required=params.default == inspect._empty,
nargs=nargs,
)
return parser
| (func, exit_on_error=True, allow_conf_yaml=False, unmatched_args='error') | [
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|
28,444 | func2argparse | func_to_manifest | null | def func_to_manifest(func, file=None, pm_mode=True):
import json
import os
import inspect
from typing import get_origin, get_args
# Read existing manifest if it exists
manifest = OrderedDict()
if file is not None:
manifestf = os.path.join(os.path.dirname(file), "manifest.json")
if os.path.exists(manifestf):
with open(manifestf, "r") as f:
manifest = json.load(f)
manifestf = os.path.join(os.path.dirname(file), "manifest.yaml")
if os.path.exists(manifestf):
import yaml
with open(manifestf, "r") as f:
manifest = yaml.load(f, Loader=yaml.FullLoader)
# Get function signature and documentation
sig = inspect.signature(func)
doc = func.__doc__
if doc is None:
raise RuntimeError("Could not find documentation in the function...")
argdocs, description, name = _parse_docs(doc)
if "name" not in manifest:
manifest["name"] = name
if "version" not in manifest:
manifest["version"] = "1"
manifest["description"] = description
# Don't add underscore arguments to argparser or args, kwargs
sigargs = []
for argn in sig.parameters:
if not (argn.startswith("_") or argn in ("args", "kwargs")):
sigargs.append(argn)
for argn in sigargs:
if argn not in argdocs:
raise RuntimeError(
f"Could not find help for argument {argn} in the docstring of the function. Please document it."
)
for argn in argdocs:
if argn not in sigargs:
raise RuntimeError(
f"Found docs for argument {argn} in the docstring which is not in the function signature. Please remove it."
)
for argn1, argn2 in zip(sigargs, argdocs):
if argn1 != argn2:
raise RuntimeError(
f"Argument order mismatch between function signature and documentation (need to have same order). {argn1} != {argn2}"
)
arguments = []
for argname in sigargs:
params = sig.parameters[argname]
argtype = params.annotation
nargs = None
# This is needed for compound types like: list[str]
if get_origin(params.annotation) is not None:
origtype = get_origin(params.annotation)
argtype = get_args(params.annotation)[0]
if origtype in (list, tuple):
nargs = "+"
# Override the nargs if specified in the docstring
if "nargs" in argdocs[argname]:
nargs = argdocs[argname]["nargs"]
default = None
if params.default != inspect._empty:
default = params.default
# Don't allow empty list defaults., convert to None
if type(default) in (list, tuple) and len(default) == 0:
raise RuntimeError(
f"Please don't use empty tuples/lists as default arguments (e.g. {argname}=()). Use =None instead"
)
if type(argtype) == tuple:
raise RuntimeError(
f"Failed to get type annotation for argument '{argname}'"
)
if argtype == bool and default:
raise RuntimeError(
"func2argparse does not allow boolean flags with default value True"
)
argument = OrderedDict()
argument["mandatory"] = params.default == inspect._empty
argument["description"] = argdocs[argname]["doc"].strip()
argument["type"] = argtype.__name__
argument["name"] = argname
argument["tag"] = f"--{argname.replace('_', '-')}"
argument["value"] = default
argument["nargs"] = nargs
argument["choices"] = argdocs[argname]["choices"]
if "gui_options" in argdocs[argname]:
argument["gui_options"] = argdocs[argname]["gui_options"]
arguments.append(argument)
manifest["params"] = arguments
# TODO: Deprecate these
if pm_mode:
if "specs" not in manifest:
if (
"resources" in manifest
and "ngpu" in manifest["resources"]
and manifest["resources"]["ngpu"] > 0
):
manifest["specs"] = '{"app": "play1GPU"}'
else:
manifest["specs"] = '{"app": "play0GPU"}'
if "api_version" not in manifest:
manifest["api_version"] = "v1"
if "container" not in manifest:
manifest["container"] = f"{manifest['name']}_v{manifest['version']}"
if "periodicity" not in manifest:
manifest["periodicity"] = 0
return manifest
| (func, file=None, pm_mode=True) | [
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|
28,445 | func2argparse | get_manifest | null | def get_manifest(file, parser, pm_mode=True, cwl=False):
import json
import os
if cwl:
return get_manifest_cwl(file, parser)
manifest = OrderedDict()
manifestf = os.path.join(os.path.dirname(file), "manifest.json")
if os.path.exists(manifestf):
with open(manifestf, "r") as f:
manifest = json.load(f)
parserargs = []
parseractions = parser._actions
for action in parseractions:
# skip the hidden arguments, the excluded args and the help argument
if action.help == "==SUPPRESS==" or action.dest in ("help",):
continue
actiondict = OrderedDict()
actiondict["mandatory"] = action.required
actiondict["type"] = action.type.__name__ if action.type is not None else "bool"
actiondict["name"] = action.dest
actiondict["value"] = action.default
actiondict["tag"] = action.option_strings[0]
actiondict["description"] = action.help
actiondict["nargs"] = action.nargs if action.nargs != 0 else None
actiondict["choices"] = action.choices
actiondict["metavar"] = action.metavar
parserargs.append(actiondict)
if "name" not in manifest:
manifest["name"] = parser.prog
if "version" not in manifest:
manifest["version"] = "1"
manifest["description"] = parser.description
manifest["params"] = parserargs
# TODO: Deprecate these
if pm_mode:
if "specs" not in manifest:
if (
"resources" in manifest
and "ngpu" in manifest["resources"]
and manifest["resources"]["ngpu"] > 0
):
manifest["specs"] = '{"app": "play1GPU"}'
else:
manifest["specs"] = '{"app": "play0GPU"}'
if "api_version" not in manifest:
manifest["api_version"] = "v1"
if "container" not in manifest:
manifest["container"] = f"{manifest['name']}_v{manifest['version']}"
if "periodicity" not in manifest:
manifest["periodicity"] = 0
return manifest
| (file, parser, pm_mode=True, cwl=False) | [
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|
28,446 | func2argparse | get_manifest_cwl | null | def get_manifest_cwl(file, parser):
import json
import yaml
import os
map_argtypes = {
"str": "string",
"bool": "boolean",
"float": "float",
"int": "int",
"Path": "File",
}
manifest = {"label": parser.prog, "doc": parser.description}
manifest.update({"cwlVersion": "v1.2", "class": "CommandLineTool", "inputs": {}})
manifestf = os.path.join(os.path.dirname(file), "manifest.cwl")
if os.path.exists(manifestf):
with open(manifestf, "r") as f:
manifest.update(yaml.load(f, Loader=yaml.FullLoader))
else:
manifestf = os.path.join(os.path.dirname(file), "manifest.json")
if os.path.exists(manifestf):
with open(manifestf, "r") as f:
manifest.update(json.load(f))
parseractions = parser._actions
for i, action in enumerate(parseractions):
# skip the hidden arguments, the excluded args and the help argument
if action.help == "==SUPPRESS==" or action.dest in ("help",):
continue
argtype = action.type.__name__ if action.type is not None else "bool"
argtype = map_argtypes[argtype]
if action.choices is not None:
enum_name = f"{action.dest.replace('-', '_')}_enum"
if "requirements" not in manifest:
manifest["requirements"] = {}
if "SchemaDefRequirement" not in manifest["requirements"]:
manifest["requirements"]["SchemaDefRequirement"] = {}
if "types" not in manifest["requirements"]["SchemaDefRequirement"]:
manifest["requirements"]["SchemaDefRequirement"]["types"] = []
manifest["requirements"]["SchemaDefRequirement"]["types"].append(
{"type": "enum", "name": enum_name, "symbols": action.choices}
)
argtype = enum_name
if action.nargs:
argtype += "[]"
if not action.required:
argtype += "?"
manifest["inputs"][action.dest] = {
"type": argtype,
"doc": action.help,
"inputBinding": {
"position": i,
"prefix": action.option_strings[0],
},
}
if action.default is not None:
manifest["inputs"][action.dest]["default"] = action.default
return manifest
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|
28,447 | func2argparse | manifest_to_argparser | null | def manifest_to_argparser(
manifest, exit_on_error=True, allow_conf_yaml=False, unmatched_args="error"
):
from pathlib import Path
try:
parser = argparse.ArgumentParser(
manifest["name"],
description=manifest["description"],
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
exit_on_error=exit_on_error,
)
except Exception:
parser = argparse.ArgumentParser(
manifest["name"],
description=manifest["description"],
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
)
if allow_conf_yaml:
parser.add_argument(
"--conf",
help="Configuration YAML file to set all parameters",
type=open,
action=lambda *x, **y: LoadFromFile(*x, **y, unmatched_args=unmatched_args),
)
# Calculate abbreviations
abbrevs = _get_name_abbreviations([x["name"] for x in manifest["params"]])
type_map = {
"Path": Path,
"bool": bool,
"int": int,
"float": float,
"str": str,
"dict": dict,
}
for param in manifest["params"]:
argname = param["name"]
if param["type"] == "bool":
if param["nargs"] is None:
parser.add_argument(
f"--{argname.replace('_', '-')}",
f"-{abbrevs[argname]}",
help=param["description"],
action="store_true",
)
else:
parser.add_argument(
f"--{argname.replace('_', '-')}",
f"-{abbrevs[argname]}",
help=param["description"],
default=param["value"],
type=str_to_bool,
required=param["mandatory"],
nargs=param["nargs"],
)
else:
if param["type"] in type_map:
param_type = type_map[param["type"]]
else:
print(
f"Warning: Argument {argname} of type {param['type']} could not be mapped to a Python base type and thus will not be type-checked."
)
param_type = None
parser.add_argument(
f"--{argname.replace('_', '-')}",
f"-{abbrevs[argname]}",
help=param["description"],
default=param["value"],
type=param_type,
choices=param["choices"],
required=param["mandatory"],
nargs=param["nargs"],
)
return parser
| (manifest, exit_on_error=True, allow_conf_yaml=False, unmatched_args='error') | [
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-0.014126238413155079,
-0.03993701934814453,
-0.037188880145549774,
0.025484563782811165,
0.00036050821654498577,
-0.028628122061491013,
-0.011694429442286491
]
|
28,448 | func2argparse | str_to_bool | null | def str_to_bool(value):
if isinstance(value, bool):
return value
if value.lower() == "false":
return False
if value.lower() == "true":
return True
raise RuntimeError(f"Invalid boolean value {value}")
| (value) | [
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|
28,449 | func2argparse | write_argparser_json | null | def write_argparser_json(outfile, parser):
import json
manifest = get_manifest(outfile, parser, pm_mode=True)
with open(outfile, "w") as f:
json.dump(manifest, f, indent=4)
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|
28,457 | matplotlib_venn._venn2 | venn2 | Plots a 2-set area-weighted Venn diagram.
The subsets parameter can be one of the following:
- A list (or a tuple) containing two set objects.
- A dict, providing sizes of three diagram regions.
The regions are identified via two-letter binary codes ('10', '01', and '11'), hence a valid set could look like:
{'10': 10, '01': 20, '11': 40}. Unmentioned codes are considered to map to 0.
- A list (or a tuple) with three numbers, denoting the sizes of the regions in the following order:
(10, 01, 11)
``set_labels`` parameter is a list of two strings - set labels. Set it to None to disable set labels.
The ``set_colors`` parameter should be a list of two elements, specifying the "base colors" of the two circles.
The color of circle intersection will be computed based on those.
The ``normalize_to`` parameter specifies the total (on-axes) area of the circles to be drawn. Sometimes tuning it (together
with the overall fiture size) may be useful to fit the text labels better.
The return value is a ``VennDiagram`` object, that keeps references to the ``Text`` and ``Patch`` objects used on the plot
and lets you know the centers and radii of the circles, if you need it.
The ``ax`` parameter specifies the axes on which the plot will be drawn (None means current axes).
The ``subset_label_formatter`` parameter is a function that can be passed to format the labels
that describe the size of each subset.
>>> from matplotlib_venn import *
>>> v = venn2(subsets={'10': 1, '01': 1, '11': 1}, set_labels = ('A', 'B'))
>>> c = venn2_circles(subsets=(1, 1, 1), linestyle='dashed')
>>> v.get_patch_by_id('10').set_alpha(1.0)
>>> v.get_patch_by_id('10').set_color('white')
>>> v.get_label_by_id('10').set_text('Unknown')
>>> v.get_label_by_id('A').set_text('Set A')
You can provide sets themselves rather than subset sizes:
>>> v = venn2(subsets=[set([1,2]), set([2,3,4,5])], set_labels = ('A', 'B'))
>>> c = venn2_circles(subsets=[set([1,2]), set([2,3,4,5])], linestyle='dashed')
>>> print("%0.2f" % (v.get_circle_radius(1)/v.get_circle_radius(0)))
1.41
| def venn2(subsets, set_labels=('A', 'B'), set_colors=('r', 'g'), alpha=0.4, normalize_to=1.0, ax=None, subset_label_formatter=None):
'''Plots a 2-set area-weighted Venn diagram.
The subsets parameter can be one of the following:
- A list (or a tuple) containing two set objects.
- A dict, providing sizes of three diagram regions.
The regions are identified via two-letter binary codes ('10', '01', and '11'), hence a valid set could look like:
{'10': 10, '01': 20, '11': 40}. Unmentioned codes are considered to map to 0.
- A list (or a tuple) with three numbers, denoting the sizes of the regions in the following order:
(10, 01, 11)
``set_labels`` parameter is a list of two strings - set labels. Set it to None to disable set labels.
The ``set_colors`` parameter should be a list of two elements, specifying the "base colors" of the two circles.
The color of circle intersection will be computed based on those.
The ``normalize_to`` parameter specifies the total (on-axes) area of the circles to be drawn. Sometimes tuning it (together
with the overall fiture size) may be useful to fit the text labels better.
The return value is a ``VennDiagram`` object, that keeps references to the ``Text`` and ``Patch`` objects used on the plot
and lets you know the centers and radii of the circles, if you need it.
The ``ax`` parameter specifies the axes on which the plot will be drawn (None means current axes).
The ``subset_label_formatter`` parameter is a function that can be passed to format the labels
that describe the size of each subset.
>>> from matplotlib_venn import *
>>> v = venn2(subsets={'10': 1, '01': 1, '11': 1}, set_labels = ('A', 'B'))
>>> c = venn2_circles(subsets=(1, 1, 1), linestyle='dashed')
>>> v.get_patch_by_id('10').set_alpha(1.0)
>>> v.get_patch_by_id('10').set_color('white')
>>> v.get_label_by_id('10').set_text('Unknown')
>>> v.get_label_by_id('A').set_text('Set A')
You can provide sets themselves rather than subset sizes:
>>> v = venn2(subsets=[set([1,2]), set([2,3,4,5])], set_labels = ('A', 'B'))
>>> c = venn2_circles(subsets=[set([1,2]), set([2,3,4,5])], linestyle='dashed')
>>> print("%0.2f" % (v.get_circle_radius(1)/v.get_circle_radius(0)))
1.41
'''
if isinstance(subsets, dict):
subsets = [subsets.get(t, 0) for t in ['10', '01', '11']]
elif len(subsets) == 2:
subsets = compute_venn2_subsets(*subsets)
if subset_label_formatter is None:
subset_label_formatter = str
areas = compute_venn2_areas(subsets, normalize_to)
centers, radii = solve_venn2_circles(areas)
regions = compute_venn2_regions(centers, radii)
colors = compute_venn2_colors(set_colors)
if ax is None:
ax = gca()
prepare_venn_axes(ax, centers, radii)
# Create and add patches and subset labels
patches = [r.make_patch() for r in regions]
for (p, c) in zip(patches, colors):
if p is not None:
p.set_facecolor(c)
p.set_edgecolor('none')
p.set_alpha(alpha)
ax.add_patch(p)
label_positions = [r.label_position() for r in regions]
subset_labels = [ax.text(lbl[0], lbl[1], subset_label_formatter(s), va='center', ha='center') if lbl is not None else None for (lbl, s) in zip(label_positions, subsets)]
# Position set labels
if set_labels is not None:
padding = np.mean([r * 0.1 for r in radii])
label_positions = [centers[0] + np.array([0.0, - radii[0] - padding]),
centers[1] + np.array([0.0, - radii[1] - padding])]
labels = [ax.text(pos[0], pos[1], txt, size='large', ha='right', va='top') for (pos, txt) in zip(label_positions, set_labels)]
labels[1].set_ha('left')
else:
labels = None
return VennDiagram(patches, subset_labels, labels, centers, radii)
| (subsets, set_labels=('A', 'B'), set_colors=('r', 'g'), alpha=0.4, normalize_to=1.0, ax=None, subset_label_formatter=None) | [
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|
28,458 | matplotlib_venn._venn2 | venn2_circles |
Plots only the two circles for the corresponding Venn diagram.
Useful for debugging or enhancing the basic venn diagram.
parameters ``subsets``, ``normalize_to`` and ``ax`` are the same as in venn2()
``kwargs`` are passed as-is to matplotlib.patches.Circle.
returns a list of three Circle patches.
>>> c = venn2_circles((1, 2, 3))
>>> c = venn2_circles({'10': 1, '01': 2, '11': 3}) # Same effect
>>> c = venn2_circles([set([1,2,3,4]), set([2,3,4,5,6])]) # Also same effect
| def venn2_circles(subsets, normalize_to=1.0, alpha=1.0, color='black', linestyle='solid', linewidth=2.0, ax=None, **kwargs):
'''
Plots only the two circles for the corresponding Venn diagram.
Useful for debugging or enhancing the basic venn diagram.
parameters ``subsets``, ``normalize_to`` and ``ax`` are the same as in venn2()
``kwargs`` are passed as-is to matplotlib.patches.Circle.
returns a list of three Circle patches.
>>> c = venn2_circles((1, 2, 3))
>>> c = venn2_circles({'10': 1, '01': 2, '11': 3}) # Same effect
>>> c = venn2_circles([set([1,2,3,4]), set([2,3,4,5,6])]) # Also same effect
'''
if isinstance(subsets, dict):
subsets = [subsets.get(t, 0) for t in ['10', '01', '11']]
elif len(subsets) == 2:
subsets = compute_venn2_subsets(*subsets)
areas = compute_venn2_areas(subsets, normalize_to)
centers, radii = solve_venn2_circles(areas)
if ax is None:
ax = gca()
prepare_venn_axes(ax, centers, radii)
result = []
for (c, r) in zip(centers, radii):
circle = Circle(c, r, alpha=alpha, edgecolor=color, facecolor='none', linestyle=linestyle, linewidth=linewidth, **kwargs)
ax.add_patch(circle)
result.append(circle)
return result
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|
28,459 | matplotlib_venn._util | venn2_unweighted |
The version of venn2 without area-weighting.
It is implemented as a wrapper around venn2. Namely, venn2 is invoked as usual, but with all subset areas
set to 1. The subset labels are then replaced in the resulting diagram with the provided subset sizes.
The parameters are all the same as that of venn2.
In addition there is a subset_areas parameter, which specifies the actual subset areas.
(it is (1, 1, 1) by default. You are free to change it, within reason).
| def venn2_unweighted(subsets, set_labels=('A', 'B'), set_colors=('r', 'g'), alpha=0.4, normalize_to=1.0, subset_areas=(1, 1, 1), ax=None, subset_label_formatter=None):
'''
The version of venn2 without area-weighting.
It is implemented as a wrapper around venn2. Namely, venn2 is invoked as usual, but with all subset areas
set to 1. The subset labels are then replaced in the resulting diagram with the provided subset sizes.
The parameters are all the same as that of venn2.
In addition there is a subset_areas parameter, which specifies the actual subset areas.
(it is (1, 1, 1) by default. You are free to change it, within reason).
'''
v = venn2(subset_areas, set_labels, set_colors, alpha, normalize_to, ax)
# Now rename the labels
if subset_label_formatter is None:
subset_label_formatter = str
subset_ids = ['10', '01', '11']
if isinstance(subsets, dict):
subsets = [subsets.get(t, 0) for t in subset_ids]
elif len(subsets) == 2:
subsets = compute_venn2_subsets(*subsets)
for n, id in enumerate(subset_ids):
lbl = v.get_label_by_id(id)
if lbl is not None:
lbl.set_text(subset_label_formatter(subsets[n]))
return v
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|
28,460 | matplotlib_venn._venn3 | venn3 | Plots a 3-set area-weighted Venn diagram.
The subsets parameter can be one of the following:
- A list (or a tuple), containing three set objects.
- A dict, providing sizes of seven diagram regions.
The regions are identified via three-letter binary codes ('100', '010', etc), hence a valid set could look like:
{'001': 10, '010': 20, '110':30, ...}. Unmentioned codes are considered to map to 0.
- A list (or a tuple) with 7 numbers, denoting the sizes of the regions in the following order:
(100, 010, 110, 001, 101, 011, 111).
``set_labels`` parameter is a list of three strings - set labels. Set it to None to disable set labels.
The ``set_colors`` parameter should be a list of three elements, specifying the "base colors" of the three circles.
The colors of circle intersections will be computed based on those.
The ``normalize_to`` parameter specifies the total (on-axes) area of the circles to be drawn. Sometimes tuning it (together
with the overall fiture size) may be useful to fit the text labels better.
The return value is a ``VennDiagram`` object, that keeps references to the ``Text`` and ``Patch`` objects used on the plot
and lets you know the centers and radii of the circles, if you need it.
The ``ax`` parameter specifies the axes on which the plot will be drawn (None means current axes).
The ``subset_label_formatter`` parameter is a function that can be passed to format the labels
that describe the size of each subset.
Note: if some of the circles happen to have zero area, you will probably not get a nice picture.
>>> import matplotlib # (The first two lines prevent the doctest from falling when TCL not installed. Not really necessary in most cases)
>>> matplotlib.use('Agg')
>>> from matplotlib_venn import *
>>> v = venn3(subsets=(1, 1, 1, 1, 1, 1, 1), set_labels = ('A', 'B', 'C'))
>>> c = venn3_circles(subsets=(1, 1, 1, 1, 1, 1, 1), linestyle='dashed')
>>> v.get_patch_by_id('100').set_alpha(1.0)
>>> v.get_patch_by_id('100').set_color('white')
>>> v.get_label_by_id('100').set_text('Unknown')
>>> v.get_label_by_id('C').set_text('Set C')
You can provide sets themselves rather than subset sizes:
>>> v = venn3(subsets=[set([1,2]), set([2,3,4,5]), set([4,5,6,7,8,9,10,11])])
>>> print("%0.2f %0.2f %0.2f" % (v.get_circle_radius(0), v.get_circle_radius(1)/v.get_circle_radius(0), v.get_circle_radius(2)/v.get_circle_radius(0)))
0.24 1.41 2.00
>>> c = venn3_circles(subsets=[set([1,2]), set([2,3,4,5]), set([4,5,6,7,8,9,10,11])])
| def venn3(subsets, set_labels=('A', 'B', 'C'), set_colors=('r', 'g', 'b'), alpha=0.4, normalize_to=1.0, ax=None, subset_label_formatter=None):
'''Plots a 3-set area-weighted Venn diagram.
The subsets parameter can be one of the following:
- A list (or a tuple), containing three set objects.
- A dict, providing sizes of seven diagram regions.
The regions are identified via three-letter binary codes ('100', '010', etc), hence a valid set could look like:
{'001': 10, '010': 20, '110':30, ...}. Unmentioned codes are considered to map to 0.
- A list (or a tuple) with 7 numbers, denoting the sizes of the regions in the following order:
(100, 010, 110, 001, 101, 011, 111).
``set_labels`` parameter is a list of three strings - set labels. Set it to None to disable set labels.
The ``set_colors`` parameter should be a list of three elements, specifying the "base colors" of the three circles.
The colors of circle intersections will be computed based on those.
The ``normalize_to`` parameter specifies the total (on-axes) area of the circles to be drawn. Sometimes tuning it (together
with the overall fiture size) may be useful to fit the text labels better.
The return value is a ``VennDiagram`` object, that keeps references to the ``Text`` and ``Patch`` objects used on the plot
and lets you know the centers and radii of the circles, if you need it.
The ``ax`` parameter specifies the axes on which the plot will be drawn (None means current axes).
The ``subset_label_formatter`` parameter is a function that can be passed to format the labels
that describe the size of each subset.
Note: if some of the circles happen to have zero area, you will probably not get a nice picture.
>>> import matplotlib # (The first two lines prevent the doctest from falling when TCL not installed. Not really necessary in most cases)
>>> matplotlib.use('Agg')
>>> from matplotlib_venn import *
>>> v = venn3(subsets=(1, 1, 1, 1, 1, 1, 1), set_labels = ('A', 'B', 'C'))
>>> c = venn3_circles(subsets=(1, 1, 1, 1, 1, 1, 1), linestyle='dashed')
>>> v.get_patch_by_id('100').set_alpha(1.0)
>>> v.get_patch_by_id('100').set_color('white')
>>> v.get_label_by_id('100').set_text('Unknown')
>>> v.get_label_by_id('C').set_text('Set C')
You can provide sets themselves rather than subset sizes:
>>> v = venn3(subsets=[set([1,2]), set([2,3,4,5]), set([4,5,6,7,8,9,10,11])])
>>> print("%0.2f %0.2f %0.2f" % (v.get_circle_radius(0), v.get_circle_radius(1)/v.get_circle_radius(0), v.get_circle_radius(2)/v.get_circle_radius(0)))
0.24 1.41 2.00
>>> c = venn3_circles(subsets=[set([1,2]), set([2,3,4,5]), set([4,5,6,7,8,9,10,11])])
'''
# Prepare parameters
if isinstance(subsets, dict):
subsets = [subsets.get(t, 0) for t in ['100', '010', '110', '001', '101', '011', '111']]
elif len(subsets) == 3:
subsets = compute_venn3_subsets(*subsets)
if subset_label_formatter is None:
subset_label_formatter = str
areas = compute_venn3_areas(subsets, normalize_to)
centers, radii = solve_venn3_circles(areas)
regions = compute_venn3_regions(centers, radii)
colors = compute_venn3_colors(set_colors)
# Remove regions that are too small from the diagram
MIN_REGION_SIZE = 1e-4
for i in range(len(regions)):
if regions[i].size() < MIN_REGION_SIZE and subsets[i] == 0:
regions[i] = VennEmptyRegion()
# There is a rare case (Issue #12) when the middle region is visually empty
# (the positioning of the circles does not let them intersect), yet the corresponding value is not 0.
# we address it separately here by positioning the label of that empty region in a custom way
if isinstance(regions[6], VennEmptyRegion) and subsets[6] > 0:
intersections = [circle_circle_intersection(centers[i], radii[i], centers[j], radii[j]) for (i, j) in [(0, 1), (1, 2), (2, 0)]]
middle_pos = np.mean([i[0] for i in intersections], 0)
regions[6] = VennEmptyRegion(middle_pos)
if ax is None:
ax = gca()
prepare_venn_axes(ax, centers, radii)
# Create and add patches and text
patches = [r.make_patch() for r in regions]
for (p, c) in zip(patches, colors):
if p is not None:
p.set_facecolor(c)
p.set_edgecolor('none')
p.set_alpha(alpha)
ax.add_patch(p)
label_positions = [r.label_position() for r in regions]
subset_labels = [ax.text(lbl[0], lbl[1], subset_label_formatter(s), va='center', ha='center') if lbl is not None else None for (lbl, s) in zip(label_positions, subsets)]
# Position labels
if set_labels is not None:
# There are two situations, when set C is not on the same line with sets A and B, and when the three are on the same line.
if abs(centers[2][1] - centers[0][1]) > tol:
# Three circles NOT on the same line
label_positions = [centers[0] + np.array([-radii[0] / 2, radii[0]]),
centers[1] + np.array([radii[1] / 2, radii[1]]),
centers[2] + np.array([0.0, -radii[2] * 1.1])]
labels = [ax.text(pos[0], pos[1], txt, size='large') for (pos, txt) in zip(label_positions, set_labels)]
labels[0].set_horizontalalignment('right')
labels[1].set_horizontalalignment('left')
labels[2].set_verticalalignment('top')
labels[2].set_horizontalalignment('center')
else:
padding = np.mean([r * 0.1 for r in radii])
# Three circles on the same line
label_positions = [centers[0] + np.array([0.0, - radii[0] - padding]),
centers[1] + np.array([0.0, - radii[1] - padding]),
centers[2] + np.array([0.0, - radii[2] - padding])]
labels = [ax.text(pos[0], pos[1], txt, size='large', ha='center', va='top') for (pos, txt) in zip(label_positions, set_labels)]
else:
labels = None
return VennDiagram(patches, subset_labels, labels, centers, radii)
| (subsets, set_labels=('A', 'B', 'C'), set_colors=('r', 'g', 'b'), alpha=0.4, normalize_to=1.0, ax=None, subset_label_formatter=None) | [
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|
28,461 | matplotlib_venn._venn3 | venn3_circles |
Plots only the three circles for the corresponding Venn diagram.
Useful for debugging or enhancing the basic venn diagram.
parameters ``subsets``, ``normalize_to`` and ``ax`` are the same as in venn3()
kwargs are passed as-is to matplotlib.patches.Circle.
returns a list of three Circle patches.
>>> plot = venn3_circles({'001': 10, '100': 20, '010': 21, '110': 13, '011': 14})
>>> plot = venn3_circles([set(['A','B','C']), set(['A','D','E','F']), set(['D','G','H'])])
| def venn3_circles(subsets, normalize_to=1.0, alpha=1.0, color='black', linestyle='solid', linewidth=2.0, ax=None, **kwargs):
'''
Plots only the three circles for the corresponding Venn diagram.
Useful for debugging or enhancing the basic venn diagram.
parameters ``subsets``, ``normalize_to`` and ``ax`` are the same as in venn3()
kwargs are passed as-is to matplotlib.patches.Circle.
returns a list of three Circle patches.
>>> plot = venn3_circles({'001': 10, '100': 20, '010': 21, '110': 13, '011': 14})
>>> plot = venn3_circles([set(['A','B','C']), set(['A','D','E','F']), set(['D','G','H'])])
'''
# Prepare parameters
if isinstance(subsets, dict):
subsets = [subsets.get(t, 0) for t in ['100', '010', '110', '001', '101', '011', '111']]
elif len(subsets) == 3:
subsets = compute_venn3_subsets(*subsets)
areas = compute_venn3_areas(subsets, normalize_to)
centers, radii = solve_venn3_circles(areas)
if ax is None:
ax = gca()
prepare_venn_axes(ax, centers, radii)
result = []
for (c, r) in zip(centers, radii):
circle = Circle(c, r, alpha=alpha, edgecolor=color, facecolor='none', linestyle=linestyle, linewidth=linewidth, **kwargs)
ax.add_patch(circle)
result.append(circle)
return result
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|
28,462 | matplotlib_venn._util | venn3_unweighted |
The version of venn3 without area-weighting.
It is implemented as a wrapper around venn3. Namely, venn3 is invoked as usual, but with all subset areas
set to 1. The subset labels are then replaced in the resulting diagram with the provided subset sizes.
The parameters are all the same as that of venn2.
In addition there is a subset_areas parameter, which specifies the actual subset areas.
(it is (1, 1, 1, 1, 1, 1, 1) by default. You are free to change it, within reason).
| def venn3_unweighted(subsets, set_labels=('A', 'B', 'C'), set_colors=('r', 'g', 'b'), alpha=0.4, normalize_to=1.0, subset_areas=(1, 1, 1, 1, 1, 1, 1), ax=None, subset_label_formatter=None):
'''
The version of venn3 without area-weighting.
It is implemented as a wrapper around venn3. Namely, venn3 is invoked as usual, but with all subset areas
set to 1. The subset labels are then replaced in the resulting diagram with the provided subset sizes.
The parameters are all the same as that of venn2.
In addition there is a subset_areas parameter, which specifies the actual subset areas.
(it is (1, 1, 1, 1, 1, 1, 1) by default. You are free to change it, within reason).
'''
v = venn3(subset_areas, set_labels, set_colors, alpha, normalize_to, ax)
# Now rename the labels
if subset_label_formatter is None:
subset_label_formatter = str
subset_ids = ['100', '010', '110', '001', '101', '011', '111']
if isinstance(subsets, dict):
subsets = [subsets.get(t, 0) for t in subset_ids]
elif len(subsets) == 3:
subsets = compute_venn3_subsets(*subsets)
for n, id in enumerate(subset_ids):
lbl = v.get_label_by_id(id)
if lbl is not None:
lbl.set_text(subset_label_formatter(subsets[n]))
return v
| (subsets, set_labels=('A', 'B', 'C'), set_colors=('r', 'g', 'b'), alpha=0.4, normalize_to=1.0, subset_areas=(1, 1, 1, 1, 1, 1, 1), ax=None, subset_label_formatter=None) | [
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|
28,463 | ometa.runtime | EOFError |
Raised when the end of input is encountered.
| class EOFError(ParseError):
"""
Raised when the end of input is encountered.
"""
def __init__(self, input, position):
ParseError.__init__(self, input, position, eof())
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|
28,464 | ometa.runtime | __eq__ | null | def __eq__(self, other):
if other.__class__ == self.__class__:
return (self.position, self.error) == (other.position, other.error)
| (self, other) | [
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|
28,465 | ometa.runtime | __init__ | null | def __init__(self, input, position):
ParseError.__init__(self, input, position, eof())
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|
28,466 | ometa.runtime | __str__ | null | def __str__(self):
return self.formatError()
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|
28,467 | ometa.runtime | formatError |
Return a pretty string containing error info about string
parsing failure.
| def formatError(self):
"""
Return a pretty string containing error info about string
parsing failure.
"""
#de-twineifying
lines = str(self.input).split('\n')
counter = 0
lineNo = 1
columnNo = 0
for line in lines:
newCounter = counter + len(line)
if newCounter > self.position:
columnNo = self.position - counter
break
else:
counter += len(line) + 1
lineNo += 1
reason = self.formatReason()
return ('\n' + line + '\n' + (' ' * columnNo + '^') +
"\nParse error at line %s, column %s: %s. trail: [%s]\n"
% (lineNo, columnNo, reason, ' '.join(self.trail)))
| (self) | [
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|
28,468 | ometa.runtime | formatReason | null | def formatReason(self):
if not self.error:
return "Syntax error"
if len(self.error) == 1:
if self.error[0][0] == 'message':
return self.error[0][1]
if self.error[0][2] == None:
return 'expected a %s' % (self.error[0][1])
else:
typ = self.error[0][1]
if typ is None:
if isinstance(self.input, basestring):
typ = 'character'
else:
typ = 'object'
return 'expected the %s %r' % (typ, self.error[0][2])
else:
bits = []
for s in self.error:
if s[0] == 'message':
desc = s[1]
elif s[2] is None:
desc = "a " + s[1]
else:
desc = repr(s[2])
if s[1] is not None:
desc = "%s %s" % (s[1], desc)
bits.append(desc)
bits.sort()
return "expected one of %s, or %s" % (', '.join(bits[:-1]),
bits[-1])
| (self) | [
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|
28,469 | ometa.runtime | mergeWith |
Merges in another error's error and trail.
| def mergeWith(self, other):
"""
Merges in another error's error and trail.
"""
self.error = list(set(self.error + other.error))
self.args = (self.position, self.error)
self.trail = other.trail or self.trail or []
| (self, other) | [
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|
28,470 | ometa.runtime | withMessage | null | def withMessage(self, msg):
return ParseError(self.input, self.position, msg, self.trail)
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|
28,471 | ometa._generated.parsley | parsley | null | def createParserClass(GrammarBase, ruleGlobals):
if ruleGlobals is None:
ruleGlobals = {}
class parsley(GrammarBase):
def rule_comment(self):
_locals = {'self': self}
self.locals['comment'] = _locals
self._trace(" '#'", (9, 13), self.input.position)
_G_exactly_1, lastError = self.exactly('#')
self.considerError(lastError, 'comment')
def _G_many_2():
def _G_not_3():
self._trace("'\\n'", (16, 20), self.input.position)
_G_exactly_4, lastError = self.exactly('\n')
self.considerError(lastError, None)
return (_G_exactly_4, self.currentError)
_G_not_5, lastError = self._not(_G_not_3)
self.considerError(lastError, None)
self._trace(' anything', (20, 29), self.input.position)
_G_apply_6, lastError = self._apply(self.rule_anything, "anything", [])
self.considerError(lastError, None)
return (_G_apply_6, self.currentError)
_G_many_7, lastError = self.many(_G_many_2)
self.considerError(lastError, 'comment')
return (_G_many_7, self.currentError)
def rule_hspace(self):
_locals = {'self': self}
self.locals['hspace'] = _locals
def _G_or_8():
self._trace(" ' '", (40, 44), self.input.position)
_G_exactly_9, lastError = self.exactly(' ')
self.considerError(lastError, None)
return (_G_exactly_9, self.currentError)
def _G_or_10():
self._trace(" '\\t'", (46, 51), self.input.position)
_G_exactly_11, lastError = self.exactly('\t')
self.considerError(lastError, None)
return (_G_exactly_11, self.currentError)
def _G_or_12():
self._trace(' comment', (53, 61), self.input.position)
_G_apply_13, lastError = self._apply(self.rule_comment, "comment", [])
self.considerError(lastError, None)
return (_G_apply_13, self.currentError)
_G_or_14, lastError = self._or([_G_or_8, _G_or_10, _G_or_12])
self.considerError(lastError, 'hspace')
return (_G_or_14, self.currentError)
def rule_vspace(self):
_locals = {'self': self}
self.locals['vspace'] = _locals
def _G_or_15():
self._trace(" '\\r\\n'", (70, 78), self.input.position)
_G_exactly_16, lastError = self.exactly('\r\n')
self.considerError(lastError, None)
return (_G_exactly_16, self.currentError)
def _G_or_17():
self._trace(" '\\r'", (80, 85), self.input.position)
_G_exactly_18, lastError = self.exactly('\r')
self.considerError(lastError, None)
return (_G_exactly_18, self.currentError)
def _G_or_19():
self._trace(" '\\n'", (87, 92), self.input.position)
_G_exactly_20, lastError = self.exactly('\n')
self.considerError(lastError, None)
return (_G_exactly_20, self.currentError)
_G_or_21, lastError = self._or([_G_or_15, _G_or_17, _G_or_19])
self.considerError(lastError, 'vspace')
return (_G_or_21, self.currentError)
def rule_ws(self):
_locals = {'self': self}
self.locals['ws'] = _locals
def _G_many_22():
def _G_or_23():
self._trace('hspace', (99, 105), self.input.position)
_G_apply_24, lastError = self._apply(self.rule_hspace, "hspace", [])
self.considerError(lastError, None)
return (_G_apply_24, self.currentError)
def _G_or_25():
self._trace(' vspace', (107, 114), self.input.position)
_G_apply_26, lastError = self._apply(self.rule_vspace, "vspace", [])
self.considerError(lastError, None)
return (_G_apply_26, self.currentError)
def _G_or_27():
self._trace(' comment', (116, 124), self.input.position)
_G_apply_28, lastError = self._apply(self.rule_comment, "comment", [])
self.considerError(lastError, None)
return (_G_apply_28, self.currentError)
_G_or_29, lastError = self._or([_G_or_23, _G_or_25, _G_or_27])
self.considerError(lastError, None)
return (_G_or_29, self.currentError)
_G_many_30, lastError = self.many(_G_many_22)
self.considerError(lastError, 'ws')
return (_G_many_30, self.currentError)
def rule_emptyline(self):
_locals = {'self': self}
self.locals['emptyline'] = _locals
def _G_many_31():
self._trace(' hspace', (139, 146), self.input.position)
_G_apply_32, lastError = self._apply(self.rule_hspace, "hspace", [])
self.considerError(lastError, None)
return (_G_apply_32, self.currentError)
_G_many_33, lastError = self.many(_G_many_31)
self.considerError(lastError, 'emptyline')
self._trace(' vspace', (147, 154), self.input.position)
_G_apply_34, lastError = self._apply(self.rule_vspace, "vspace", [])
self.considerError(lastError, 'emptyline')
return (_G_apply_34, self.currentError)
def rule_indentation(self):
_locals = {'self': self}
self.locals['indentation'] = _locals
def _G_many_35():
self._trace(' emptyline', (168, 178), self.input.position)
_G_apply_36, lastError = self._apply(self.rule_emptyline, "emptyline", [])
self.considerError(lastError, None)
return (_G_apply_36, self.currentError)
_G_many_37, lastError = self.many(_G_many_35)
self.considerError(lastError, 'indentation')
def _G_many1_38():
self._trace(' hspace', (179, 186), self.input.position)
_G_apply_39, lastError = self._apply(self.rule_hspace, "hspace", [])
self.considerError(lastError, None)
return (_G_apply_39, self.currentError)
_G_many1_40, lastError = self.many(_G_many1_38, _G_many1_38())
self.considerError(lastError, 'indentation')
return (_G_many1_40, self.currentError)
def rule_noindentation(self):
_locals = {'self': self}
self.locals['noindentation'] = _locals
def _G_many_41():
self._trace(' emptyline', (203, 213), self.input.position)
_G_apply_42, lastError = self._apply(self.rule_emptyline, "emptyline", [])
self.considerError(lastError, None)
return (_G_apply_42, self.currentError)
_G_many_43, lastError = self.many(_G_many_41)
self.considerError(lastError, 'noindentation')
def _G_lookahead_44():
def _G_not_45():
self._trace('hspace', (218, 224), self.input.position)
_G_apply_46, lastError = self._apply(self.rule_hspace, "hspace", [])
self.considerError(lastError, None)
return (_G_apply_46, self.currentError)
_G_not_47, lastError = self._not(_G_not_45)
self.considerError(lastError, None)
return (_G_not_47, self.currentError)
_G_lookahead_48, lastError = self.lookahead(_G_lookahead_44)
self.considerError(lastError, 'noindentation')
return (_G_lookahead_48, self.currentError)
def rule_number(self):
_locals = {'self': self}
self.locals['number'] = _locals
self._trace(' ws', (234, 237), self.input.position)
_G_apply_49, lastError = self._apply(se | (grammar, *a, **kw) | [
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|
28,472 | ometa.runtime | __init__ | null | def __init__(self, grammar, *a, **kw):
OMetaBase.__init__(self, dedent(grammar), *a, **kw)
self._spanStart = 0
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|
28,473 | ometa.runtime | _apply |
Apply a rule method to some args.
@param rule: A method of this object.
@param ruleName: The name of the rule invoked.
@param args: A sequence of arguments to it.
| def _apply(self, rule, ruleName, args):
"""
Apply a rule method to some args.
@param rule: A method of this object.
@param ruleName: The name of the rule invoked.
@param args: A sequence of arguments to it.
"""
if args:
if basestring is str:
attrname = '__code__'
else:
attrname = 'func_code'
if ((not getattr(rule, attrname, None))
or getattr(rule, attrname).co_argcount - 1 != len(args)):
for arg in args[::-1]:
self.input = ArgInput(arg, self.input)
return rule()
else:
return rule(*args)
memoRec = self.input.getMemo(ruleName)
if memoRec is None:
oldPosition = self.input
lr = LeftRecursion()
memoRec = self.input.setMemo(ruleName, lr)
try:
memoRec = self.input.setMemo(ruleName,
[rule(), self.input])
except ParseError as e:
e.trail.append(ruleName)
raise
if lr.detected:
sentinel = self.input
while True:
try:
self.input = oldPosition
ans = rule()
if (self.input == sentinel):
break
memoRec = oldPosition.setMemo(ruleName,
[ans, self.input])
except ParseError:
break
self.input = oldPosition
elif isinstance(memoRec, LeftRecursion):
memoRec.detected = True
raise self.input.nullError()
self.input = memoRec[1]
return memoRec[0]
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|
28,474 | ometa.runtime | _not |
Call the given function. Raise ParseError iff it does not.
@param fn: A callable of no arguments.
| def _not(self, fn):
"""
Call the given function. Raise ParseError iff it does not.
@param fn: A callable of no arguments.
"""
m = self.input
try:
fn()
except ParseError:
self.input = m
return True, self.input.nullError()
else:
raise self.input.nullError()
| (self, fn) | [
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|
28,475 | ometa.runtime | _or |
Call each of a list of functions in sequence until one succeeds,
rewinding the input between each.
@param fns: A list of no-argument callables.
| def _or(self, fns):
"""
Call each of a list of functions in sequence until one succeeds,
rewinding the input between each.
@param fns: A list of no-argument callables.
"""
errors = []
for f in fns:
try:
m = self.input
ret, err = f()
errors.append(err)
return ret, joinErrors(errors)
except ParseError as e:
errors.append(e)
self.input = m
raise joinErrors(errors)
| (self, fns) | [
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|
28,476 | ometa.runtime | _trace | null | def _trace(self, src, span, inputPos):
pass
| (self, src, span, inputPos) | [
-0.0530395582318306,
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]
|
28,477 | ometa.runtime | applicationArgs |
Collect rule arguments, a list of Python expressions separated by
spaces.
| def applicationArgs(self, finalChar):
"""
Collect rule arguments, a list of Python expressions separated by
spaces.
"""
args = []
while True:
try:
(arg, endchar), err = self.pythonExpr(" " + finalChar)
if not arg:
break
args.append(t.Action(arg))
if endchar == finalChar:
break
if endchar == ' ':
self.rule_anything()
except ParseError:
break
if args:
return args
else:
raise self.input.nullError()
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|
28,478 | ometa.runtime | apply |
Apply the named rule, optionally with some arguments.
@param ruleName: A rule name.
| def apply(self, ruleName, *args):
"""
Apply the named rule, optionally with some arguments.
@param ruleName: A rule name.
"""
r = getattr(self, "rule_"+ruleName, None)
if r is not None:
val, err = self._apply(r, ruleName, args)
return val, err
else:
raise NameError("No rule named '%s'" %(ruleName,))
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|
28,479 | ometa.runtime | considerError | null | def considerError(self, error, typ=None):
if error:
newPos = error.position
curPos = self.currentError.position
if newPos > curPos:
self.currentError = error
elif newPos == curPos:
self.currentError.mergeWith(error)
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|
28,480 | ometa.runtime | consumedby | null | def consumedby(self, expr):
oldInput = self.input
_, e = expr()
slice = oldInput.data[oldInput.position:self.input.position]
return slice, e
| (self, expr) | [
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]
|
28,481 | ometa.runtime | digit |
Match a single digit.
| def digit(self):
"""
Match a single digit.
"""
x, e = self.rule_anything()
if x.isdigit():
return x, e
else:
raise e.withMessage(expected("digit"))
| (self) | [
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|
28,482 | ometa.runtime | eatWhitespace |
Consume input until a non-whitespace character is reached.
| def eatWhitespace(self):
"""
Consume input until a non-whitespace character is reached.
"""
consumingComment = False
while True:
try:
c, e = self.input.head()
except EOFError as e:
break
t = self.input.tail()
if c.isspace() or consumingComment:
self.input = t
if c == '\n':
consumingComment = False
elif c == '#':
consumingComment = True
else:
break
return True, e
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|
28,483 | ometa.runtime | end |
Match the end of the stream.
| def end(self):
"""
Match the end of the stream.
"""
return self._not(self.rule_anything)
| (self) | [
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]
|
28,484 | ometa.runtime | exactly |
Match a single item from the input equal to the given
specimen, or a sequence of characters if the input is string.
@param wanted: What to match.
| def exactly(self, wanted):
"""
Match a single item from the input equal to the given
specimen, or a sequence of characters if the input is string.
@param wanted: What to match.
"""
i = self.input
if not self.tree and len(wanted) > 1:
val, p, self.input = self.input.slice(len(wanted))
else:
val, p = self.input.head()
self.input = self.input.tail()
if wanted == val:
return val, p
else:
self.input = i
raise p.withMessage(expected(None, wanted))
| (self, wanted) | [
0.05757470056414604,
0.01699824444949627,
0.027124080806970596,
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0.01392759382724762,
0.015170476399362087,
0.08034869283437729,
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0.006936380639672279,
0.06685975939035416,
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0.010820387862622738,
0.02730685845017433,
0.0063560642302036285,
0.053443942219018936,
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|
28,485 | ometa.runtime | foreignApply |
Apply the named rule of a foreign grammar.
@param grammarName: name to look up in locals/globals for grammar
@param ruleName: rule name
| def foreignApply(self, grammarName, ruleName, globals_, locals_, *args):
"""
Apply the named rule of a foreign grammar.
@param grammarName: name to look up in locals/globals for grammar
@param ruleName: rule name
"""
grammar = locals_.get(grammarName, None)
if grammar is None:
grammar = globals_[grammarName]
grammar = getattr(grammar, "_grammarClass", grammar)
instance = grammar(self.input, stream=True)
rule = getattr(instance, "rule_" + ruleName, None)
if rule is not None:
self.input.setMemo(ruleName, None)
result = instance._apply(rule, ruleName, args)
self.input = instance.input
return result
else:
raise NameError("No rule named '%s' on grammar '%s'" %
(ruleName, grammarName))
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|
28,486 | ometa.runtime | getSpan | null | def getSpan(self):
return (self._spanStart, self.input.position)
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|
28,487 | ometa.runtime | isTree | null | def isTree(self):
self.tree_target = True
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|
28,488 | ometa.runtime | label |
Wrap a function and add label to expected message.
| def label(self, foo, label):
"""
Wrap a function and add label to expected message.
"""
try:
val, err = foo()
err2 = err.withMessage([("Custom Exception:", label, None)])
if self.currentError == err:
self.currentError = err2
return val, err2
except ParseError as e:
raise e.withMessage([("Custom Exception:", label, None)])
| (self, foo, label) | [
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|
28,489 | ometa.runtime | letter |
Match a single letter.
| def letter(self):
"""
Match a single letter.
"""
x, e = self.rule_anything()
if x.isalpha():
return x, e
else:
raise e.withMessage(expected("letter"))
| (self) | [
0.03383234515786171,
-0.018126942217350006,
0.0553494393825531,
0.03146269917488098,
-0.013240624219179153,
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0.031687553972005844,
0.002739364979788661,
0.06347888708114624,
-0.06593502312898636,
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|
28,490 | ometa.runtime | letterOrDigit |
Match a single alphanumeric character.
| def letterOrDigit(self):
"""
Match a single alphanumeric character.
"""
x, e = self.rule_anything()
if x.isalnum():
return x, e
else:
raise e.withMessage(expected("letter or digit"))
| (self) | [
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]
|
28,491 | ometa.runtime | listpattern |
Call the given function, treating the next object on the stack as an
iterable to be used for input.
@param expr: A callable of no arguments.
| def listpattern(self, expr):
"""
Call the given function, treating the next object on the stack as an
iterable to be used for input.
@param expr: A callable of no arguments.
"""
v, e = self.rule_anything()
oldInput = self.input
try:
self.input = InputStream.fromIterable(v)
except TypeError:
raise e.withMessage(expected("an iterable"))
expr()
self.end()
self.input = oldInput
return v, e
| (self, expr) | [
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|
28,492 | ometa.runtime | lookahead |
Execute the given callable, rewinding the stream no matter whether it
returns successfully or not.
@param f: A callable of no arguments.
| def lookahead(self, f):
"""
Execute the given callable, rewinding the stream no matter whether it
returns successfully or not.
@param f: A callable of no arguments.
"""
try:
m = self.input
x = f()
return x
finally:
self.input = m
| (self, f) | [
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|
28,493 | ometa.runtime | many |
Call C{fn} until it fails to match the input. Collect the resulting
values into a list.
@param fn: A callable of no arguments.
@param initial: Initial values to populate the returned list with.
| def many(self, fn, *initial):
"""
Call C{fn} until it fails to match the input. Collect the resulting
values into a list.
@param fn: A callable of no arguments.
@param initial: Initial values to populate the returned list with.
"""
ans = []
for x, e in initial:
ans.append(x)
while True:
try:
m = self.input
v, _ = fn()
ans.append(v)
except ParseError as err:
e = err
self.input = m
break
return ans, e
| (self, fn, *initial) | [
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|
28,494 | ometa.runtime | parseGrammar |
Entry point for converting a grammar to code (of some variety).
@param name: The name for this grammar.
@param builder: A class that implements the grammar-building interface
(interface to be explicitly defined later)
| def parseGrammar(self, name):
"""
Entry point for converting a grammar to code (of some variety).
@param name: The name for this grammar.
@param builder: A class that implements the grammar-building interface
(interface to be explicitly defined later)
"""
self.name = name
res, err = self.apply("grammar")
try:
self.input.head()
except EOFError:
pass
else:
raise err
return res
| (self, name) | [
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|
28,495 | ometa.runtime | pred |
Call the given function, raising ParseError if it returns false.
@param expr: A callable of no arguments.
| def pred(self, expr):
"""
Call the given function, raising ParseError if it returns false.
@param expr: A callable of no arguments.
"""
val, e = expr()
if not val:
raise e
else:
return True, e
| (self, expr) | [
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|
28,496 | ometa.runtime | pythonExpr |
Extract a Python expression from the input and return it.
@arg endChars: A set of characters delimiting the end of the expression.
| def pythonExpr(self, endChars="\r\n"):
"""
Extract a Python expression from the input and return it.
@arg endChars: A set of characters delimiting the end of the expression.
"""
delimiters = { "(": ")", "[": "]", "{": "}"}
stack = []
expr = []
endchar = None
while True:
try:
c, e = self.rule_anything()
endchar = c
except ParseError as err:
e = err
endchar = None
break
if c in endChars and len(stack) == 0:
self.input = self.input.prev()
break
else:
expr.append(c)
if c in delimiters:
stack.append(delimiters[c])
elif len(stack) > 0 and c == stack[-1]:
stack.pop()
elif c in delimiters.values():
raise ParseError(self.input.data, self.input.position,
expected("Python expression"))
elif c in "\"'":
while True:
strc, stre = self.rule_anything()
expr.append(strc)
slashcount = 0
while strc == '\\':
strc, stre = self.rule_anything()
expr.append(strc)
slashcount += 1
if strc == c and slashcount % 2 == 0:
break
if len(stack) > 0:
raise ParseError(self.input.data, self.input.position,
expected("Python expression"))
return (''.join(expr).strip(), endchar), e
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|
28,497 | ometa.runtime | repeat |
Call C{fn} C{max} times or until it fails to match the
input. Fail if less than C{min} matches were made.
Collect the results into a list.
| def repeat(self, min, max, fn):
"""
Call C{fn} C{max} times or until it fails to match the
input. Fail if less than C{min} matches were made.
Collect the results into a list.
"""
if min == max == 0:
return '', None
ans = []
for i in range(min):
v, e = fn()
ans.append(v)
for i in range(min, max):
try:
m = self.input
v, e = fn()
ans.append(v)
except ParseError as err:
e = err
self.input = m
break
return ans, e
| (self, min, max, fn) | [
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]
|
28,498 | ometa.runtime | ruleValueExpr |
Find and generate code for a Python expression terminated by a close
paren/brace or end of line.
| def ruleValueExpr(self, singleLine, span=None):
"""
Find and generate code for a Python expression terminated by a close
paren/brace or end of line.
"""
(expr, endchar), err = self.pythonExpr(endChars="\r\n)]")
# if str(endchar) in ")]" or (singleLine and endchar):
# self.input = self.input.prev()
return t.Action(expr, span=span)
| (self, singleLine, span=None) | [
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|
28,499 | ometa.runtime | rule_anything |
Match a single item from the input of any kind.
| def rule_anything(self):
"""
Match a single item from the input of any kind.
"""
h, p = self.input.head()
self.input = self.input.tail()
return h, p
| (self) | [
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|
28,536 | ometa.runtime | token |
Match and return the given string, consuming any preceding whitespace.
| def token(self, tok):
"""
Match and return the given string, consuming any preceding whitespace.
"""
m = self.input
try:
self.eatWhitespace()
for c in tok:
v, e = self.exactly(c)
return tok, e
except ParseError as e:
self.input = m
raise e.withMessage(expected("token", tok))
| (self, tok) | [
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]
|
28,540 | ometa.runtime | semanticActionExpr |
Find and generate code for a Python expression terminated by a
close-paren, whose return value is ignored.
| def semanticActionExpr(self, span=None):
"""
Find and generate code for a Python expression terminated by a
close-paren, whose return value is ignored.
"""
val = t.Action(self.pythonExpr(')')[0][0], span=span)
self.exactly(')')
return val
| (self, span=None) | [
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]
|
28,541 | ometa.runtime | semanticPredicateExpr |
Find and generate code for a Python expression terminated by a
close-paren, whose return value determines the success of the pattern
it's in.
| def semanticPredicateExpr(self, span=None):
"""
Find and generate code for a Python expression terminated by a
close-paren, whose return value determines the success of the pattern
it's in.
"""
expr = t.Action(self.pythonExpr(')')[0][0], span=span)
self.exactly(')')
return t.Predicate(expr, span=span)
| (self, span=None) | [
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|
28,542 | ometa.runtime | startSpan | null | def startSpan(self):
self._spanStart = self.input.position
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|
28,543 | ometa.runtime | stringtemplate | null | def stringtemplate(self, template, vals):
output = []
checkIndent = False
currentIndent = ""
for chunk in template.args:
if chunk.tag.name == ".String.":
output.append(chunk.data)
if checkIndent and chunk.data.isspace():
currentIndent = chunk.data
checkIndent = False
if chunk.data.endswith('\n'):
checkIndent = True
elif chunk.tag.name == "QuasiExprHole":
v = vals[chunk.args[0].data]
if not isinstance(v, basestring):
try:
vs = list(v)
except TypeError:
raise TypeError("Only know how to templatize strings and lists of strings")
lines = []
for x in vs:
lines.extend(x.split('\n'))
compacted_lines = []
for line in lines:
if line:
compacted_lines.append(line)
elif compacted_lines:
compacted_lines[-1] = compacted_lines[-1] + '\n'
v = ("\n" + currentIndent).join(compacted_lines)
output.append(v)
else:
raise TypeError("didn't expect %r in string template" % chunk)
return ''.join(output).rstrip('\n'), None
| (self, template, vals) | [
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|
28,544 | ometa.runtime | superApply |
Apply the named rule as defined on this object's superclass.
@param ruleName: A rule name.
| def superApply(self, ruleName, *args):
"""
Apply the named rule as defined on this object's superclass.
@param ruleName: A rule name.
"""
r = getattr(super(self.__class__, self), "rule_"+ruleName, None)
if r is not None:
self.input.setMemo(ruleName, None)
return self._apply(r, ruleName, args)
else:
raise NameError("No rule named '%s'" %(ruleName,))
| (self, ruleName, *args) | [
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|
28,546 | ometa.runtime | OMetaBase |
Base class providing implementations of the fundamental OMeta
operations. Built-in rules are defined here.
| class OMetaBase(object):
"""
Base class providing implementations of the fundamental OMeta
operations. Built-in rules are defined here.
"""
globals = None
tree = False
def __init__(self, input, globals=None, name='<string>', tree=False,
stream=False):
"""
@param input: The string or input object (if stream=True) to be parsed.
@param globals: A dictionary of names to objects, for use in evaluating
embedded Python expressions.
@param tree: Whether the input should be treated as part of a
tree of nested iterables, rather than being a standalone
string.
@param stream: Whether the input should be treated as an existing
InputStream object.
"""
if stream:
self.input = input
elif self.tree or tree:
self.input = InputStream.fromIterable(input)
else:
self.input = InputStream.fromText(input)
self.locals = {}
if self.globals is None:
if globals is None:
self.globals = {}
else:
self.globals = globals
if basestring is str:
self.globals['basestring'] = str
self.globals['unichr'] = chr
self.currentError = self.input.nullError()
def considerError(self, error, typ=None):
if error:
newPos = error.position
curPos = self.currentError.position
if newPos > curPos:
self.currentError = error
elif newPos == curPos:
self.currentError.mergeWith(error)
def _trace(self, src, span, inputPos):
pass
def superApply(self, ruleName, *args):
"""
Apply the named rule as defined on this object's superclass.
@param ruleName: A rule name.
"""
r = getattr(super(self.__class__, self), "rule_"+ruleName, None)
if r is not None:
self.input.setMemo(ruleName, None)
return self._apply(r, ruleName, args)
else:
raise NameError("No rule named '%s'" %(ruleName,))
def foreignApply(self, grammarName, ruleName, globals_, locals_, *args):
"""
Apply the named rule of a foreign grammar.
@param grammarName: name to look up in locals/globals for grammar
@param ruleName: rule name
"""
grammar = locals_.get(grammarName, None)
if grammar is None:
grammar = globals_[grammarName]
grammar = getattr(grammar, "_grammarClass", grammar)
instance = grammar(self.input, stream=True)
rule = getattr(instance, "rule_" + ruleName, None)
if rule is not None:
self.input.setMemo(ruleName, None)
result = instance._apply(rule, ruleName, args)
self.input = instance.input
return result
else:
raise NameError("No rule named '%s' on grammar '%s'" %
(ruleName, grammarName))
def apply(self, ruleName, *args):
"""
Apply the named rule, optionally with some arguments.
@param ruleName: A rule name.
"""
r = getattr(self, "rule_"+ruleName, None)
if r is not None:
val, err = self._apply(r, ruleName, args)
return val, err
else:
raise NameError("No rule named '%s'" %(ruleName,))
def _apply(self, rule, ruleName, args):
"""
Apply a rule method to some args.
@param rule: A method of this object.
@param ruleName: The name of the rule invoked.
@param args: A sequence of arguments to it.
"""
if args:
if basestring is str:
attrname = '__code__'
else:
attrname = 'func_code'
if ((not getattr(rule, attrname, None))
or getattr(rule, attrname).co_argcount - 1 != len(args)):
for arg in args[::-1]:
self.input = ArgInput(arg, self.input)
return rule()
else:
return rule(*args)
memoRec = self.input.getMemo(ruleName)
if memoRec is None:
oldPosition = self.input
lr = LeftRecursion()
memoRec = self.input.setMemo(ruleName, lr)
try:
memoRec = self.input.setMemo(ruleName,
[rule(), self.input])
except ParseError as e:
e.trail.append(ruleName)
raise
if lr.detected:
sentinel = self.input
while True:
try:
self.input = oldPosition
ans = rule()
if (self.input == sentinel):
break
memoRec = oldPosition.setMemo(ruleName,
[ans, self.input])
except ParseError:
break
self.input = oldPosition
elif isinstance(memoRec, LeftRecursion):
memoRec.detected = True
raise self.input.nullError()
self.input = memoRec[1]
return memoRec[0]
def exactly(self, wanted):
"""
Match a single item from the input equal to the given
specimen, or a sequence of characters if the input is string.
@param wanted: What to match.
"""
i = self.input
if not self.tree and len(wanted) > 1:
val, p, self.input = self.input.slice(len(wanted))
else:
val, p = self.input.head()
self.input = self.input.tail()
if wanted == val:
return val, p
else:
self.input = i
raise p.withMessage(expected(None, wanted))
def many(self, fn, *initial):
"""
Call C{fn} until it fails to match the input. Collect the resulting
values into a list.
@param fn: A callable of no arguments.
@param initial: Initial values to populate the returned list with.
"""
ans = []
for x, e in initial:
ans.append(x)
while True:
try:
m = self.input
v, _ = fn()
ans.append(v)
except ParseError as err:
e = err
self.input = m
break
return ans, e
def repeat(self, min, max, fn):
"""
Call C{fn} C{max} times or until it fails to match the
input. Fail if less than C{min} matches were made.
Collect the results into a list.
"""
if min == max == 0:
return '', None
ans = []
for i in range(min):
v, e = fn()
ans.append(v)
for i in range(min, max):
try:
m = self.input
v, e = fn()
ans.append(v)
except ParseError as err:
e = err
self.input = m
break
return ans, e
def _or(self, fns):
"""
Call each of a list of functions in sequence until one succeeds,
rewinding the input between each.
@param fns: A list of no-argument callables.
"""
errors = []
for f in fns:
try:
m = self.input
ret, err = f()
errors.append(err)
return ret, joinErrors(errors)
except ParseError as e:
errors.append(e)
self.input = m
raise joinErrors(errors)
def _not(self, fn):
"""
Call the given function. Raise ParseError iff it does not.
@param fn: A callable of no arguments.
"""
m = self.input
try:
fn()
except ParseError:
self.input = m
return True, self.input.nullError()
else:
raise self.input.nullError()
def eatWhitespace(self):
"""
Consume input until a non-whitespac | (input, globals=None, name='<string>', tree=False, stream=False) | [
0.02083522453904152,
-0.00952890608459711,
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0.007954469881951809,
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0.012595491483807564,
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0.021998222917318344,
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|
28,547 | ometa.runtime | __init__ |
@param input: The string or input object (if stream=True) to be parsed.
@param globals: A dictionary of names to objects, for use in evaluating
embedded Python expressions.
@param tree: Whether the input should be treated as part of a
tree of nested iterables, rather than being a standalone
string.
@param stream: Whether the input should be treated as an existing
InputStream object.
| def __init__(self, input, globals=None, name='<string>', tree=False,
stream=False):
"""
@param input: The string or input object (if stream=True) to be parsed.
@param globals: A dictionary of names to objects, for use in evaluating
embedded Python expressions.
@param tree: Whether the input should be treated as part of a
tree of nested iterables, rather than being a standalone
string.
@param stream: Whether the input should be treated as an existing
InputStream object.
"""
if stream:
self.input = input
elif self.tree or tree:
self.input = InputStream.fromIterable(input)
else:
self.input = InputStream.fromText(input)
self.locals = {}
if self.globals is None:
if globals is None:
self.globals = {}
else:
self.globals = globals
if basestring is str:
self.globals['basestring'] = str
self.globals['unichr'] = chr
self.currentError = self.input.nullError()
| (self, input, globals=None, name='<string>', tree=False, stream=False) | [
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|
28,556 | ometa.runtime | eatWhitespace |
Consume input until a non-whitespace character is reached.
| def eatWhitespace(self):
"""
Consume input until a non-whitespace character is reached.
"""
while True:
try:
c, e = self.input.head()
except EOFError as err:
e = err
break
tl = self.input.tail()
if c.isspace():
self.input = tl
else:
break
return True, e
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|
28,580 | ometa.runtime | ParseError |
?Redo from start
| class ParseError(Exception):
"""
?Redo from start
"""
def __init__(self, input, position, message, trail=None):
Exception.__init__(self, position, message)
self.position = position
self.error = message or []
self.input = input
self.trail = trail or []
def __eq__(self, other):
if other.__class__ == self.__class__:
return (self.position, self.error) == (other.position, other.error)
def mergeWith(self, other):
"""
Merges in another error's error and trail.
"""
self.error = list(set(self.error + other.error))
self.args = (self.position, self.error)
self.trail = other.trail or self.trail or []
def formatReason(self):
if not self.error:
return "Syntax error"
if len(self.error) == 1:
if self.error[0][0] == 'message':
return self.error[0][1]
if self.error[0][2] == None:
return 'expected a %s' % (self.error[0][1])
else:
typ = self.error[0][1]
if typ is None:
if isinstance(self.input, basestring):
typ = 'character'
else:
typ = 'object'
return 'expected the %s %r' % (typ, self.error[0][2])
else:
bits = []
for s in self.error:
if s[0] == 'message':
desc = s[1]
elif s[2] is None:
desc = "a " + s[1]
else:
desc = repr(s[2])
if s[1] is not None:
desc = "%s %s" % (s[1], desc)
bits.append(desc)
bits.sort()
return "expected one of %s, or %s" % (', '.join(bits[:-1]),
bits[-1])
def formatError(self):
"""
Return a pretty string containing error info about string
parsing failure.
"""
#de-twineifying
lines = str(self.input).split('\n')
counter = 0
lineNo = 1
columnNo = 0
for line in lines:
newCounter = counter + len(line)
if newCounter > self.position:
columnNo = self.position - counter
break
else:
counter += len(line) + 1
lineNo += 1
reason = self.formatReason()
return ('\n' + line + '\n' + (' ' * columnNo + '^') +
"\nParse error at line %s, column %s: %s. trail: [%s]\n"
% (lineNo, columnNo, reason, ' '.join(self.trail)))
def __str__(self):
return self.formatError()
def withMessage(self, msg):
return ParseError(self.input, self.position, msg, self.trail)
| (input, position, message, trail=None) | [
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|
28,582 | ometa.runtime | __init__ | null | def __init__(self, input, position, message, trail=None):
Exception.__init__(self, position, message)
self.position = position
self.error = message or []
self.input = input
self.trail = trail or []
| (self, input, position, message, trail=None) | [
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|
28,588 | parsley | _GrammarWrapper |
A wrapper for Parsley grammar instances.
To invoke a Parsley rule, invoke a method with that name -- this
turns x(input).foo() calls into grammar.apply("foo") calls.
| class _GrammarWrapper(object):
"""
A wrapper for Parsley grammar instances.
To invoke a Parsley rule, invoke a method with that name -- this
turns x(input).foo() calls into grammar.apply("foo") calls.
"""
def __init__(self, grammar, input):
self._grammar = grammar
self._input = input
#so pydoc doesn't get trapped in the __getattr__
self.__name__ = _GrammarWrapper.__name__
def __getattr__(self, name):
"""
Return a function that will instantiate a grammar and invoke the named
rule.
:param name: Rule name.
"""
def invokeRule(*args, **kwargs):
"""
Invoke a Parsley rule. Passes any positional args to the rule.
"""
try:
ret, err = self._grammar.apply(name, *args)
except ParseError as e:
self._grammar.considerError(e)
err = self._grammar.currentError
else:
try:
extra, _ = self._grammar.input.head()
except EOFError:
return ret
else:
# problem is that input remains, so:
err = ParseError(err.input, err.position + 1,
[["message", "expected EOF"]], err.trail)
raise err
return invokeRule
| (grammar, input) | [
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|
28,589 | parsley | __getattr__ |
Return a function that will instantiate a grammar and invoke the named
rule.
:param name: Rule name.
| def __getattr__(self, name):
"""
Return a function that will instantiate a grammar and invoke the named
rule.
:param name: Rule name.
"""
def invokeRule(*args, **kwargs):
"""
Invoke a Parsley rule. Passes any positional args to the rule.
"""
try:
ret, err = self._grammar.apply(name, *args)
except ParseError as e:
self._grammar.considerError(e)
err = self._grammar.currentError
else:
try:
extra, _ = self._grammar.input.head()
except EOFError:
return ret
else:
# problem is that input remains, so:
err = ParseError(err.input, err.position + 1,
[["message", "expected EOF"]], err.trail)
raise err
return invokeRule
| (self, name) | [
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]
|
28,590 | parsley | __init__ | null | def __init__(self, grammar, input):
self._grammar = grammar
self._input = input
#so pydoc doesn't get trapped in the __getattr__
self.__name__ = _GrammarWrapper.__name__
| (self, grammar, input) | [
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|
28,592 | parsley | makeGrammar |
Create a class from a Parsley grammar.
:param source: A grammar, as a string.
:param bindings: A mapping of variable names to objects.
:param name: Name used for the generated class.
:param unwrap: If True, return a parser class suitable for
subclassing. If False, return a wrapper with the
friendly API.
:param extends: The superclass for the generated parser class.
:param tracefunc: A 3-arg function which takes a fragment of grammar
source, the start/end indexes in the grammar of this
fragment, and a position in the input. Invoked for
terminals and rule applications.
| def makeGrammar(source, bindings, name='Grammar', unwrap=False,
extends=wrapGrammar(OMetaBase), tracefunc=None):
"""
Create a class from a Parsley grammar.
:param source: A grammar, as a string.
:param bindings: A mapping of variable names to objects.
:param name: Name used for the generated class.
:param unwrap: If True, return a parser class suitable for
subclassing. If False, return a wrapper with the
friendly API.
:param extends: The superclass for the generated parser class.
:param tracefunc: A 3-arg function which takes a fragment of grammar
source, the start/end indexes in the grammar of this
fragment, and a position in the input. Invoked for
terminals and rule applications.
"""
g = OMeta.makeGrammar(source, name).createParserClass(
unwrapGrammar(extends), bindings)
if unwrap:
return g
else:
return wrapGrammar(g, tracefunc=tracefunc)
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|
28,593 | parsley | makeProtocol |
Create a Twisted ``Protocol`` factory from a Parsley grammar.
:param source: A grammar, as a string.
:param senderFactory: A one-argument callable that takes a twisted
``Transport`` and returns a :ref:`sender <senders>`.
:param receiverFactory: A one-argument callable that takes the sender
returned by the ``senderFactory`` and returns a :ref:`receiver
<receivers>`.
:param bindings: A mapping of variable names to objects which will be
accessible from python code in the grammar.
:param name: The name used for the generated grammar class.
:returns: A nullary callable which will return an instance of
:class:`~.ParserProtocol`.
| def makeProtocol(source, senderFactory, receiverFactory, bindings=None,
name='Grammar'):
"""
Create a Twisted ``Protocol`` factory from a Parsley grammar.
:param source: A grammar, as a string.
:param senderFactory: A one-argument callable that takes a twisted
``Transport`` and returns a :ref:`sender <senders>`.
:param receiverFactory: A one-argument callable that takes the sender
returned by the ``senderFactory`` and returns a :ref:`receiver
<receivers>`.
:param bindings: A mapping of variable names to objects which will be
accessible from python code in the grammar.
:param name: The name used for the generated grammar class.
:returns: A nullary callable which will return an instance of
:class:`~.ParserProtocol`.
"""
from ometa.protocol import ParserProtocol
if bindings is None:
bindings = {}
grammar = OMeta(source).parseGrammar(name)
return functools.partial(
ParserProtocol, grammar, senderFactory, receiverFactory, bindings)
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|
28,594 | terml.quasiterm | quasiterm |
Build a quasiterm from a string.
| def quasiterm(termString):
"""
Build a quasiterm from a string.
"""
p = QTermParser(termString)
result, error = p.apply("term")
try:
p.input.head()
except EOFError:
pass
else:
raise error
return result
| (termString) | [
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]
|
28,595 | parsley | stack |
Stack some senders or receivers for ease of wrapping.
``stack(x, y, z)`` will return a factory usable as a sender or receiver
factory which will, when called with a transport or sender as an argument,
return ``x(y(z(argument)))``.
| def stack(*wrappers):
"""
Stack some senders or receivers for ease of wrapping.
``stack(x, y, z)`` will return a factory usable as a sender or receiver
factory which will, when called with a transport or sender as an argument,
return ``x(y(z(argument)))``.
"""
if not wrappers:
raise TypeError('at least one argument is required')
def factory(arg):
ret = wrappers[-1](arg)
for wrapper in wrappers[-2::-1]:
ret = wrapper(ret)
return ret
return factory
| (*wrappers) | [
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|
28,596 | terml.parser | parseTerm |
Build a TermL term tree from a string.
| def parseTerm(termString):
"""
Build a TermL term tree from a string.
"""
p = TermLParser(termString)
result, error = p.apply("term")
try:
p.input.head()
except EOFError:
pass
else:
raise error
return result
| (termString) | [
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|
28,597 | parsley | unwrapGrammar |
Access the internal parser class for a Parsley grammar object.
| def unwrapGrammar(w):
"""
Access the internal parser class for a Parsley grammar object.
"""
return getattr(w, '_grammarClass', None) or w
| (w) | [
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|
28,598 | parsley | wrapGrammar | null | def wrapGrammar(g, tracefunc=None):
def makeParser(input):
"""
Creates a parser for the given input, with methods for
invoking each rule.
:param input: The string you want to parse.
"""
parser = g(input)
if tracefunc:
parser._trace = tracefunc
return _GrammarWrapper(parser, input)
makeParser._grammarClass = g
return makeParser
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|
28,599 | jupyter_server_fileid.extension | FileIdExtension | null | class FileIdExtension(ExtensionApp):
name = "jupyter_server_fileid"
file_id_manager_class = Type(
klass=BaseFileIdManager,
help="""File ID manager class to use.
Defaults to ArbitraryFileIdManager.
""",
config=True,
default_value=ArbitraryFileIdManager,
)
file_id_manager = Instance(
klass=BaseFileIdManager, help="An instance of the File ID manager.", allow_none=True
)
handlers = [("/api/fileid/id", FileIDHandler), ("/api/fileid/path", FilePathHandler)]
def initialize_settings(self):
self.log.info(f"Configured File ID manager: {self.file_id_manager_class.__name__}")
self.file_id_manager = self.file_id_manager_class(
log=self.log, root_dir=self.serverapp.root_dir, config=self.config
)
self.settings.update({"file_id_manager": self.file_id_manager})
# attach listener to contents manager events (requires jupyter_server~=2)
if "event_logger" in self.settings:
self.initialize_event_listeners()
def initialize_event_listeners(self):
handlers_by_action = self.file_id_manager.get_handlers_by_action()
async def cm_listener(logger: EventLogger, schema_id: str, data: dict) -> None:
handler = handlers_by_action[data["action"]]
if handler:
handler(data)
self.settings["event_logger"].add_listener(
schema_id="https://events.jupyter.org/jupyter_server/contents_service/v1",
listener=cm_listener,
)
self.log.info("Attached event listeners.")
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|
28,600 | traitlets.config.application | __del__ | null | def __del__(self) -> None:
self.close_handlers()
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|
28,602 | traitlets.config.application | __init__ | null | def __init__(self, **kwargs: t.Any) -> None:
SingletonConfigurable.__init__(self, **kwargs)
# Ensure my class is in self.classes, so my attributes appear in command line
# options and config files.
cls = self.__class__
if cls not in self.classes:
if self.classes is cls.classes:
# class attr, assign instead of insert
self.classes = [cls, *self.classes]
else:
self.classes.insert(0, self.__class__)
| (self, **kwargs: Any) -> NoneType | [
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|
28,606 | traitlets.config.application | _classes_inc_parents | Iterate through configurable classes, including configurable parents
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Children should always be after parents, and each class should only be
yielded once.
| def _classes_inc_parents(
self, classes: ClassesType | None = None
) -> t.Generator[type[Configurable], None, None]:
"""Iterate through configurable classes, including configurable parents
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Children should always be after parents, and each class should only be
yielded once.
"""
if classes is None:
classes = self.classes
seen = set()
for c in classes:
# We want to sort parents before children, so we reverse the MRO
for parent in reversed(c.mro()):
if issubclass(parent, Configurable) and (parent not in seen):
seen.add(parent)
yield parent
| (self, classes: Optional[List[Type[traitlets.config.configurable.Configurable]]] = None) -> Generator[type[traitlets.config.configurable.Configurable], NoneType, NoneType] | [
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|
28,607 | traitlets.config.application | _classes_with_config_traits |
Yields only classes with configurable traits, and their subclasses.
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Thus, produced sample config-file will contain all classes
on which a trait-value may be overridden:
- either on the class owning the trait,
- or on its subclasses, even if those subclasses do not define
any traits themselves.
| def _classes_with_config_traits(
self, classes: ClassesType | None = None
) -> t.Generator[type[Configurable], None, None]:
"""
Yields only classes with configurable traits, and their subclasses.
:param classes:
The list of classes to iterate; if not set, uses :attr:`classes`.
Thus, produced sample config-file will contain all classes
on which a trait-value may be overridden:
- either on the class owning the trait,
- or on its subclasses, even if those subclasses do not define
any traits themselves.
"""
if classes is None:
classes = self.classes
cls_to_config = OrderedDict(
(cls, bool(cls.class_own_traits(config=True)))
for cls in self._classes_inc_parents(classes)
)
def is_any_parent_included(cls: t.Any) -> bool:
return any(b in cls_to_config and cls_to_config[b] for b in cls.__bases__)
# Mark "empty" classes for inclusion if their parents own-traits,
# and loop until no more classes gets marked.
#
while True:
to_incl_orig = cls_to_config.copy()
cls_to_config = OrderedDict(
(cls, inc_yes or is_any_parent_included(cls))
for cls, inc_yes in cls_to_config.items()
)
if cls_to_config == to_incl_orig:
break
for cl, inc_yes in cls_to_config.items():
if inc_yes:
yield cl
| (self, classes: Optional[List[Type[traitlets.config.configurable.Configurable]]] = None) -> Generator[type[traitlets.config.configurable.Configurable], NoneType, NoneType] | [
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|
28,608 | jupyter_core.application | _config_dir_default | null | def _config_dir_default(self) -> str:
return jupyter_config_dir()
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|
28,609 | jupyter_server.extension.application | _config_file_name_default | The default config file name. | def _config_file_name_default(self):
"""The default config file name."""
if not self.name:
return ""
return "jupyter_{}_config".format(self.name.replace("-", "_"))
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|
28,610 | traitlets.config.application | _configure_logging | null | def _configure_logging(self) -> None:
config = self.get_default_logging_config()
nested_update(config, self.logging_config or {})
dictConfig(config)
# make a note that we have configured logging
self._logging_configured = True
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|
28,611 | traitlets.config.application | _create_loader | null | def _create_loader(
self,
argv: list[str] | None,
aliases: StrDict,
flags: StrDict,
classes: ClassesType | None,
) -> KVArgParseConfigLoader:
return KVArgParseConfigLoader(
argv, aliases, flags, classes=classes, log=self.log, subcommands=self.subcommands
)
| (self, argv: list[str] | None, aliases: Dict[str, Any], flags: Dict[str, Any], classes: Optional[List[Type[traitlets.config.configurable.Configurable]]]) -> traitlets.config.loader.KVArgParseConfigLoader | [
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|
28,612 | jupyter_core.application | _data_dir_default | null | def _data_dir_default(self) -> str:
d = jupyter_data_dir()
ensure_dir_exists(d, mode=0o700)
return d
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|
28,614 | jupyter_core.application | _find_subcommand | null | def _find_subcommand(self, name: str) -> str:
name = f"{self.name}-{name}"
return which(name) or ""
| (self, name: str) -> str | [
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|
28,615 | traitlets.config.configurable | _get_log_handler | Return the default Handler
Returns None if none can be found
Deprecated, this now returns the first log handler which may or may
not be the default one.
| def _get_log_handler(self) -> logging.Handler | None:
"""Return the default Handler
Returns None if none can be found
Deprecated, this now returns the first log handler which may or may
not be the default one.
"""
if not self.log:
return None
logger: logging.Logger = (
self.log if isinstance(self.log, logging.Logger) else self.log.logger
)
if not getattr(logger, "handlers", None):
# no handlers attribute or empty handlers list
return None
return logger.handlers[0]
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|
28,617 | jupyter_core.application | _jupyter_path_default | null | def _jupyter_path_default(self) -> list[str]:
return jupyter_path()
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|
28,618 | jupyter_server.extension.application | _jupyter_server_config | The jupyter server config. | def _jupyter_server_config(self):
"""The jupyter server config."""
base_config = {
"ServerApp": {
"default_url": self.default_url,
"open_browser": self.open_browser,
"file_url_prefix": self.file_url_prefix,
}
}
base_config["ServerApp"].update(self.serverapp_config)
return base_config
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|
28,619 | jupyter_server.extension.application | _link_jupyter_server_extension | Link the ExtensionApp to an initialized ServerApp.
The ServerApp is stored as an attribute and config
is exchanged between ServerApp and `self` in case
the command line contains traits for the ExtensionApp
or the ExtensionApp's config files have server
settings.
Note, the ServerApp has not initialized the Tornado
Web Application yet, so do not try to affect the
`web_app` attribute.
| def _link_jupyter_server_extension(self, serverapp: ServerApp) -> None:
"""Link the ExtensionApp to an initialized ServerApp.
The ServerApp is stored as an attribute and config
is exchanged between ServerApp and `self` in case
the command line contains traits for the ExtensionApp
or the ExtensionApp's config files have server
settings.
Note, the ServerApp has not initialized the Tornado
Web Application yet, so do not try to affect the
`web_app` attribute.
"""
self.serverapp = serverapp
# Load config from an ExtensionApp's config files.
self.load_config_file()
# ServerApp's config might have picked up
# config for the ExtensionApp. We call
# update_config to update ExtensionApp's
# traits with these values found in ServerApp's
# config.
# ServerApp config ---> ExtensionApp traits
self.update_config(self.serverapp.config)
# Use ExtensionApp's CLI parser to find any extra
# args that passed through ServerApp and
# now belong to ExtensionApp.
self.parse_command_line(self.serverapp.extra_args)
# If any config should be passed upstream to the
# ServerApp, do it here.
# i.e. ServerApp traits <--- ExtensionApp config
self.serverapp.update_config(self.config)
# Acknowledge that this extension has been linked.
self._linked = True
| (self, serverapp: jupyter_server.serverapp.ServerApp) -> NoneType | [
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|
28,621 | jupyter_core.application | _log_level_default | null | def _log_level_default(self) -> int:
return logging.INFO
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|
28,624 | jupyter_server.extension.application | _prepare_config | Builds a Config object from the extension's traits and passes
the object to the webapp's settings as `<name>_config`.
| def _prepare_config(self):
"""Builds a Config object from the extension's traits and passes
the object to the webapp's settings as `<name>_config`.
"""
traits = self.class_own_traits().keys()
self.extension_config = Config({t: getattr(self, t) for t in traits})
self.settings[f"{self.name}_config"] = self.extension_config
| (self) | [
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|
28,625 | jupyter_server.extension.application | _prepare_handlers | Prepare the handlers. | def _prepare_handlers(self):
"""Prepare the handlers."""
assert self.serverapp is not None
webapp = self.serverapp.web_app
# Get handlers defined by extension subclass.
self.initialize_handlers()
# prepend base_url onto the patterns that we match
new_handlers = []
for handler_items in self.handlers:
# Build url pattern including base_url
pattern = url_path_join(webapp.settings["base_url"], handler_items[0])
handler = handler_items[1]
# Get handler kwargs, if given
kwargs: dict[str, t.Any] = {}
if issubclass(handler, ExtensionHandlerMixin):
kwargs["name"] = self.name
try:
kwargs.update(handler_items[2])
except IndexError:
pass
new_handler = (pattern, handler, kwargs)
new_handlers.append(new_handler)
# Add static endpoint for this extension, if static paths are given.
if len(self.static_paths) > 0:
# Append the extension's static directory to server handlers.
static_url = url_path_join(self.static_url_prefix, "(.*)")
# Construct handler.
handler = (
static_url,
webapp.settings["static_handler_class"],
{"path": self.static_paths},
)
new_handlers.append(handler)
webapp.add_handlers(".*$", new_handlers)
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|
28,626 | jupyter_server.extension.application | _prepare_settings | Prepare the settings. | def _prepare_settings(self):
"""Prepare the settings."""
# Make webapp settings accessible to initialize_settings method
assert self.serverapp is not None
webapp = self.serverapp.web_app
self.settings.update(**webapp.settings)
# Add static and template paths to settings.
self.settings.update(
{
f"{self.name}_static_paths": self.static_paths,
f"{self.name}": self,
}
)
# Get setting defined by subclass using initialize_settings method.
self.initialize_settings()
# Update server settings with extension settings.
webapp.settings.update(**self.settings)
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|
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