Datasets:
neulab
/
tldr

Dataset card Data Studio Files
xet
Community
question_id
stringlengths
1
5
nl
stringlengths
4
218
cmd
stringlengths
1
231
oracle_man
list
cmd_name
stringlengths
1
24
tldr_cmd_name
stringlengths
1
24
manual_exist
bool
1 class
matching_info
dict
4308
start a specific ci job
gitlab job_play {{project_name}} {{job_id}}
[ "gitlab_3" ]
gitlab
gitlab
true
{ "token": [ "job_play", "|main|" ], "oracle_man": [ [], [ "gitlab_3", "gitlab_4", "gitlab_5", "gitlab_6" ] ] }
4309
display default information about a font
fc-pattern --default '{{DejaVu Serif}}'
[ "fc-pattern_2", "fc-pattern_3", "fc-pattern_7" ]
fc-pattern
fc-pattern
true
{ "token": [ "--default", "|main|" ], "oracle_man": [ [ "fc-pattern_2", "fc-pattern_3", "fc-pattern_7" ], [ "fc-pattern_3", "fc-pattern_4" ] ] }
4310
display config information about a font
fc-pattern --config '{{DejaVu Serif}}'
[ "fc-pattern_2", "fc-pattern_3", "fc-pattern_6" ]
fc-pattern
fc-pattern
true
{ "token": [ "--config", "|main|" ], "oracle_man": [ [ "fc-pattern_2", "fc-pattern_3", "fc-pattern_6" ], [ "fc-pattern_3", "fc-pattern_4" ] ] }
4317
list local docker images
docker image ls
[ "docker-image_2", "docker-image_3" ]
docker-image
docker-image
true
{ "token": [ "docker", "image", "ls", "|main|" ], "oracle_man": [ [ "docker-image_2" ], [ "docker-image_2" ], [], [ "docker-image_3" ] ] }
4318
delete unused local docker images
docker image prune
[ "docker-image_2", "docker-image_3" ]
docker-image
docker-image
true
{ "token": [ "docker", "image", "prune", "|main|" ], "oracle_man": [ [ "docker-image_2" ], [ "docker-image_2" ], [], [ "docker-image_3" ] ] }
4319
delete all unused images (not just those without a tag)
docker image prune --all
[ "docker-image_2", "docker-image_3" ]
docker-image
docker-image
true
{ "token": [ "docker", "image", "prune", "--all", "|main|" ], "oracle_man": [ [ "docker-image_2" ], [ "docker-image_2" ], [], [], [ "docker-image_3" ] ] }
4320
show the history of a local docker image
docker image history {{image}}
[ "docker-image_2", "docker-image_3" ]
docker-image
docker-image
true
{ "token": [ "docker", "image", "history", "|main|" ], "oracle_man": [ [ "docker-image_2" ], [ "docker-image_2" ], [], [ "docker-image_3" ] ] }
4321
open vs code
code
[ "code_1" ]
code
code
true
{ "token": [ "|main|" ], "oracle_man": [ [ "code_1" ] ] }
4322
open the current directory in vs code
code .
[ "code_1" ]
code
code
true
{ "token": [ ".", "|main|" ], "oracle_man": [ [], [ "code_1" ] ] }
4323
open a file or directory in vs code
code {{path/to/file_or_directory}}
[ "code_1" ]
code
code
true
{ "token": [ "|main|" ], "oracle_man": [ [ "code_1" ] ] }
4324
open a file or directory in the currently open vs code window
code --reuse-window {{path/to/file_or_directory}}
[ "code_1" ]
code
code
true
{ "token": [ "--reuse-window", "|main|" ], "oracle_man": [ [], [ "code_1" ] ] }
4325
compare two files in vs code
code -d {{file1}} {{file2}}
[ "code_1" ]
code
code
true
{ "token": [ "-d", "|main|" ], "oracle_man": [ [], [ "code_1" ] ] }
4326
open vs code with superuser (sudo) permissions
sudo code {{path/to/file_or_directory}} --user-data-dir
[ "code_1" ]
code
code
true
{ "token": [ "--user-data-dir", "|main|" ], "oracle_man": [ [], [ "code_1" ] ] }
4330
list supported file formats
mat2 --list
[ "mat2_3", "mat2_8" ]
mat2
mat2
true
{ "token": [ "--list", "|main|" ], "oracle_man": [ [ "mat2_8" ], [ "mat2_3", "mat2_4" ] ] }
4331
remove metadata from a file
mat2 {{path/to/file}}
[ "mat2_3" ]
mat2
mat2
true
{ "token": [ "|main|" ], "oracle_man": [ [ "mat2_3", "mat2_4" ] ] }
4332
remove metadata from a file and print detailed output to the console
mat2 --verbose {{path/to/file}}
[ "mat2_3", "mat2_10" ]
mat2
mat2
true
{ "token": [ "--verbose", "|main|" ], "oracle_man": [ [ "mat2_10" ], [ "mat2_3", "mat2_4" ] ] }
4333
show metadata in a file without removing it
mat2 --show {{path/to/file}}
[ "mat2_3", "mat2_12", "mat2_18" ]
mat2
mat2
true
{ "token": [ "--show", "|main|" ], "oracle_man": [ [ "mat2_12", "mat2_18" ], [ "mat2_3", "mat2_4" ] ] }
4334
partially remove metadata from a file
mat2 --lightweight {{path/to/file}}
[ "mat2_3", "mat2_13" ]
mat2
mat2
true
{ "token": [ "--lightweight", "|main|" ], "oracle_man": [ [ "mat2_13" ], [ "mat2_3", "mat2_4" ] ] }
4335
generate scaffolding for a new project based on a template
lein new {{template_name}} {{project_name}}
[ "lein_3", "lein_7" ]
lein
lein
true
{ "token": [ "new", "|main|" ], "oracle_man": [ [ "lein_7" ], [ "lein_3", "lein_4" ] ] }
4336
start a repl session either with the project or standalone
lein repl
[ "lein_3", "lein_9" ]
lein
lein
true
{ "token": [ "repl", "|main|" ], "oracle_man": [ [ "lein_9" ], [ "lein_3", "lein_4" ] ] }
4337
run the project's `main` function with optional args
lein run {{args}}
[ "lein_3", "lein_26" ]
lein
lein
true
{ "token": [ "run", "|main|" ], "oracle_man": [ [ "lein_26" ], [ "lein_3", "lein_4" ] ] }
4338
run the project's tests
lein test
[ "lein_3", "lein_8" ]
lein
lein
true
{ "token": [ "test", "|main|" ], "oracle_man": [ [ "lein_8" ], [ "lein_3", "lein_4" ] ] }
4339
package up the project files and all its dependencies into a jar file
lein uberjar
[ "lein_3", "lein_10" ]
lein
lein
true
{ "token": [ "uberjar", "|main|" ], "oracle_man": [ [ "lein_10" ], [ "lein_3", "lein_4" ] ] }
4344
add files to a changelist, creating the changelist if it does not exist
svn changelist {{changelist_name}} {{path/to/file1}} {{path/to/file2}}
[ "svn_1" ]
svn
svn-changelist
true
{ "token": [ "changelist", "|main|" ], "oracle_man": [ [], [ "svn_1" ] ] }
4345
remove files from a changelist
svn changelist --remove {{path/to/file1}} {{path/to/file2}}
[ "svn_1" ]
svn
svn-changelist
true
{ "token": [ "changelist", "--remove", "|main|" ], "oracle_man": [ [], [], [ "svn_1" ] ] }
4346
remove the whole changelist at once
svn changelist --remove --recursive --changelist {{changelist_name}} .
[ "svn_1" ]
svn
svn-changelist
true
{ "token": [ "changelist", "--remove", "--recursive", "--changelist", ".", "|main|" ], "oracle_man": [ [], [], [], [], [], [ "svn_1" ] ] }
4347
add the contents of a spaceseparated list of directories to a changelist
svn changelist --recursive {{changelist_name}} {{path/to/directory1}} {{path/to/directory2}}
[ "svn_1" ]
svn
svn-changelist
true
{ "token": [ "changelist", "--recursive", "|main|" ], "oracle_man": [ [], [], [ "svn_1" ] ] }
4348
commit a changelist
svn commit --changelist {{changelist_name}}
[ "svn_1" ]
svn
svn-changelist
true
{ "token": [ "commit", "--changelist", "|main|" ], "oracle_man": [ [], [], [ "svn_1" ] ] }
4353
calculate the parent directory of a given path
dirname {{path/to/file_or_directory}}
[ "dirname_3" ]
dirname
dirname
true
{ "token": [ "|main|" ], "oracle_man": [ [ "dirname_3", "dirname_4", "dirname_5", "dirname_6" ] ] }
4354
calculate the parent directory of multiple paths
dirname {{path/to/file_a}} {{path/to/directory_b}}
[ "dirname_3" ]
dirname
dirname
true
{ "token": [ "|main|" ], "oracle_man": [ [ "dirname_3", "dirname_4", "dirname_5", "dirname_6" ] ] }
4355
delimit output with a nul character instead of a newline (useful when combining with `xargs`)
dirname --zero {{path/to/directory_a}} {{path/to/file_b}}
[ "dirname_3", "dirname_4" ]
dirname
dirname
true
{ "token": [ "--zero", "|main|" ], "oracle_man": [ [ "dirname_4" ], [ "dirname_3", "dirname_4", "dirname_5", "dirname_6" ] ] }
4384
build the storage pool specified by name or uuid (determine using `virsh poollist`)
virsh pool-build --pool {{name|uuid}}
[ "virsh_4", "virsh_1286", "virsh_1287", "virsh_1375", "virsh_1397", "virsh_1401", "virsh_1405", "virsh_1408", "virsh_1411", "virsh_1414", "virsh_1421", "virsh_1424", "virsh_1429", "virsh_1432", "virsh_1447", "virsh_1450", "virsh_1452", "virsh_1455", "virsh_1459", "virsh_1461", "virsh_1469", "virsh_1472", "virsh_1478", "virsh_1481", "virsh_1483", "virsh_1487" ]
virsh
virsh-pool-build
true
{ "token": [ "pool-build", "--pool", "|main|" ], "oracle_man": [ [ "virsh_1286", "virsh_1287" ], [ "virsh_1375", "virsh_1397", "virsh_1401", "virsh_1405", "virsh_1408", "virsh_1411", "virsh_1414", "virsh_1421", "virsh_1424", "virsh_1429", "virsh_1432", "virsh_1447", "virsh_1450", "virsh_1452", "virsh_1455", "virsh_1459", "virsh_1461", "virsh_1469", "virsh_1472", "virsh_1478", "virsh_1481", "virsh_1483", "virsh_1487" ], [ "virsh_4", "virsh_5", "virsh_6", "virsh_7", "virsh_8", "virsh_9", "virsh_10", "virsh_11", "virsh_12", "virsh_13", "virsh_14", "virsh_15", "virsh_16", "virsh_17", "virsh_18", "virsh_19", "virsh_20", "virsh_21", "virsh_22", "virsh_23", "virsh_24", "virsh_25", "virsh_26", "virsh_27", "virsh_28", "virsh_29", "virsh_30", "virsh_31", "virsh_32", "virsh_33" ] ] }
4392
compile a source file
nim compile {{file.nim}}
[ "nim_2", "nim_4", "nim_5" ]
nim
nim
true
{ "token": [ "compile", "|main|" ], "oracle_man": [ [ "nim_4", "nim_5" ], [ "nim_2", "nim_3", "nim_4", "nim_5", "nim_6", "nim_7" ] ] }
4393
compile and run a source file
nim compile -r {{file.nim}}
[ "nim_2", "nim_4", "nim_5", "nim_7", "nim_20" ]
nim
nim
true
{ "token": [ "compile", "-r", "|main|" ], "oracle_man": [ [ "nim_4", "nim_5" ], [ "nim_7", "nim_20" ], [ "nim_2", "nim_3", "nim_4", "nim_5", "nim_6", "nim_7" ] ] }
4394
compile a source file with release optimizations enabled
nim compile -d:release {{file.nim}}
[ "nim_2", "nim_4", "nim_5", "nim_17" ]
nim
nim
true
{ "token": [ "compile", "-d:release", "|main|" ], "oracle_man": [ [ "nim_4", "nim_5" ], [ "nim_17" ], [ "nim_2", "nim_3", "nim_4", "nim_5", "nim_6", "nim_7" ] ] }
4395
build a release binary optimized for low file size
nim compile -d:release --opt:size {{file.nim}}
[ "nim_2", "nim_4", "nim_5", "nim_17" ]
nim
nim
true
{ "token": [ "compile", "-d:release", "--opt:size", "|main|" ], "oracle_man": [ [ "nim_4", "nim_5" ], [ "nim_17" ], [], [ "nim_2", "nim_3", "nim_4", "nim_5", "nim_6", "nim_7" ] ] }
4396
generate html documentation for a module (output will be placed in the current directory)
nim doc {{file.nim}}
[ "nim_2", "nim_6" ]
nim
nim
true
{ "token": [ "doc", "|main|" ], "oracle_man": [ [ "nim_6" ], [ "nim_2", "nim_3", "nim_4", "nim_5", "nim_6", "nim_7" ] ] }
4403
interactively create a `composer.json` file
composer init
[ "composer_1", "composer_26" ]
composer
composer
true
{ "token": [ "init", "|main|" ], "oracle_man": [ [ "composer_26" ], [ "composer_1" ] ] }
4404
add a package as a dependency for this project, adding it to `composer.json`
composer require {{user/package_name}}
[ "composer_1", "composer_33" ]
composer
composer
true
{ "token": [ "require", "|main|" ], "oracle_man": [ [ "composer_33" ], [ "composer_1" ] ] }
4405
install all the dependencies in this project's `composer.json` and create `composer.lock`
composer install
[ "composer_1", "composer_27" ]
composer
composer
true
{ "token": [ "install", "|main|" ], "oracle_man": [ [ "composer_27" ], [ "composer_1" ] ] }
4406
uninstall a package from this project, removing it as a dependency from `composer.json`
composer remove {{user/package_name}}
[ "composer_1", "composer_32" ]
composer
composer
true
{ "token": [ "remove", "|main|" ], "oracle_man": [ [ "composer_32" ], [ "composer_1" ] ] }
4407
update all the dependencies in this project's `composer.json` and note versions in `composer.lock` file
composer update
[ "composer_1", "composer_39" ]
composer
composer
true
{ "token": [ "update", "|main|" ], "oracle_man": [ [ "composer_39" ], [ "composer_1" ] ] }
4408
update composer lock only after updating `composer.json` manually
composer update --lock
[ "composer_1", "composer_39" ]
composer
composer
true
{ "token": [ "update", "--lock", "|main|" ], "oracle_man": [ [ "composer_39" ], [], [ "composer_1" ] ] }
4409
learn more about why a dependency can't be installed
composer why-not {{user/package_name}}
[ "composer_1", "composer_31" ]
composer
composer
true
{ "token": [ "why-not", "|main|" ], "oracle_man": [ [ "composer_31" ], [ "composer_1" ] ] }
4410
update composer to its latest version
composer self-update
[ "composer_1" ]
composer
composer
true
{ "token": [ "self-update", "|main|" ], "oracle_man": [ [], [ "composer_1" ] ] }
4411
run in terminal
glances
[ "glances_3" ]
glances
glances
true
{ "token": [ "|main|" ], "oracle_man": [ [ "glances_3", "glances_4" ] ] }
4412
run in web server mode to show results in browser
glances -w
[ "glances_3", "glances_17", "glances_45", "glances_47", "glances_57", "glances_135", "glances_159" ]
glances
glances
true
{ "token": [ "-w", "|main|" ], "oracle_man": [ [ "glances_17", "glances_45", "glances_47", "glances_57", "glances_135", "glances_159" ], [ "glances_3", "glances_4" ] ] }
4413
run in server mode to allow connections from other glances clients
glances -s
[ "glances_3", "glances_12", "glances_21", "glances_31", "glances_38", "glances_39", "glances_40", "glances_41", "glances_42", "glances_43", "glances_50", "glances_53", "glances_56", "glances_135", "glances_164" ]
glances
glances
true
{ "token": [ "-s", "|main|" ], "oracle_man": [ [ "glances_12", "glances_21", "glances_31", "glances_38", "glances_39", "glances_40", "glances_41", "glances_42", "glances_43", "glances_50", "glances_53", "glances_56", "glances_135", "glances_164" ], [ "glances_3", "glances_4" ] ] }
4414
connect to a glances server
glances -c {{hostname}}
[ "glances_3", "glances_8", "glances_14", "glances_30", "glances_38", "glances_46", "glances_58", "glances_161", "glances_165", "glances_166" ]
glances
glances
true
{ "token": [ "-c", "|main|" ], "oracle_man": [ [ "glances_8", "glances_14", "glances_30", "glances_38", "glances_46", "glances_58", "glances_161", "glances_165", "glances_166" ], [ "glances_3", "glances_4" ] ] }
4415
require a password in (web) server mode
glances -s --password
[ "glances_3", "glances_12", "glances_21", "glances_31", "glances_37", "glances_38", "glances_39", "glances_40", "glances_41", "glances_42", "glances_43", "glances_50", "glances_53", "glances_56", "glances_135", "glances_164" ]
glances
glances
true
{ "token": [ "-s", "--password", "|main|" ], "oracle_man": [ [ "glances_12", "glances_21", "glances_31", "glances_38", "glances_39", "glances_40", "glances_41", "glances_42", "glances_43", "glances_50", "glances_53", "glances_56", "glances_135", "glances_164" ], [ "glances_37" ], [ "glances_3", "glances_4" ] ] }
4419
create a new encrypted vault file with a prompt for a password
ansible-vault create {{vault_file}}
[ "ansible-vault_3", "ansible-vault_8" ]
ansible-vault
ansible-vault
true
{ "token": [ "create", "|main|" ], "oracle_man": [ [ "ansible-vault_8" ], [ "ansible-vault_3", "ansible-vault_4" ] ] }
4420
create a new encrypted vault file using a vault key file to encrypt it
ansible-vault create --vault-password-file={{password_file}} {{vault_file}}
[ "ansible-vault_3", "ansible-vault_8", "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_49" ]
ansible-vault
ansible-vault
true
{ "token": [ "create", "--vault-password-file", "|main|" ], "oracle_man": [ [ "ansible-vault_8" ], [ "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_49" ], [ "ansible-vault_3", "ansible-vault_4" ] ] }
4421
encrypt an existing file using an optional password file
ansible-vault encrypt --vault-password-file={{password_file}} {{vault_file}}
[ "ansible-vault_3", "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_27", "ansible-vault_32", "ansible-vault_33", "ansible-vault_40", "ansible-vault_49" ]
ansible-vault
ansible-vault
true
{ "token": [ "encrypt", "--vault-password-file", "|main|" ], "oracle_man": [ [ "ansible-vault_3", "ansible-vault_27", "ansible-vault_33" ], [ "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_49" ], [ "ansible-vault_3", "ansible-vault_4" ] ] }
4422
encrypt a string using ansible's encrypted string format, displaying interactive prompts
ansible-vault encrypt_string
[ "ansible-vault_3" ]
ansible-vault
ansible-vault
true
{ "token": [ "encrypt_string", "|main|" ], "oracle_man": [ [], [ "ansible-vault_3", "ansible-vault_4" ] ] }
4423
view an encrypted file, using a password file to decrypt
ansible-vault view --vault-password-file={{password_file}} {{vault_file}}
[ "ansible-vault_3", "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_23", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_49" ]
ansible-vault
ansible-vault
true
{ "token": [ "view", "--vault-password-file", "|main|" ], "oracle_man": [ [ "ansible-vault_23" ], [ "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_49" ], [ "ansible-vault_3", "ansible-vault_4" ] ] }
4424
rekey already encrypted vault file with a new password file
ansible-vault rekey --vault-password-file={{old_password_file}} --new-vault-password-file={{new_password_file}} {{vault_file}}
[ "ansible-vault_3", "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_43", "ansible-vault_47", "ansible-vault_49" ]
ansible-vault
ansible-vault
true
{ "token": [ "rekey", "--vault-password-file", "--new-vault-password-file", "|main|" ], "oracle_man": [ [ "ansible-vault_43" ], [ "ansible-vault_12", "ansible-vault_17", "ansible-vault_22", "ansible-vault_26", "ansible-vault_32", "ansible-vault_40", "ansible-vault_49" ], [ "ansible-vault_47" ], [ "ansible-vault_3", "ansible-vault_4" ] ] }
4425
create a helm chart
helm create {{chart_name}}
[ "helm_3" ]
helm
helm
true
{ "token": [ "create", "|main|" ], "oracle_man": [ [], [ "helm_3", "helm_4" ] ] }
4426
add a new helm repository
helm repo add {{repo_name}}
[ "helm_3" ]
helm
helm
true
{ "token": [ "repo", "add", "|main|" ], "oracle_man": [ [], [], [ "helm_3", "helm_4" ] ] }
4427
list helm repositories
helm repo list
[ "helm_3" ]
helm
helm
true
{ "token": [ "repo", "list", "|main|" ], "oracle_man": [ [], [], [ "helm_3", "helm_4" ] ] }
4428
update helm repositories
helm repo update
[ "helm_3" ]
helm
helm
true
{ "token": [ "repo", "update", "|main|" ], "oracle_man": [ [], [], [ "helm_3", "helm_4" ] ] }
4429
delete a helm repository
helm repo remove {{repo_name}}
[ "helm_3" ]
helm
helm
true
{ "token": [ "repo", "remove", "|main|" ], "oracle_man": [ [], [], [ "helm_3", "helm_4" ] ] }
4430
install a helm chart
helm install {{repo_name}}/{{chart_name}}
[ "helm_3" ]
helm
helm
true
{ "token": [ "install", "|main|" ], "oracle_man": [ [], [ "helm_3", "helm_4" ] ] }
4431
download helm chart as a tar archive
helm get {{chart_release_name}}
[ "helm_3" ]
helm
helm
true
{ "token": [ "get", "|main|" ], "oracle_man": [ [], [ "helm_3", "helm_4" ] ] }
4432
update helm dependencies
helm dependency update
[ "helm_3" ]
helm
helm
true
{ "token": [ "dependency", "update", "|main|" ], "oracle_man": [ [], [], [ "helm_3", "helm_4" ] ] }
4433
clear the screen (equivalent to pressing controll in bash shell)
clear
[ "clear_3" ]
clear
clear
true
{ "token": [ "|main|" ], "oracle_man": [ [ "clear_3", "clear_4" ] ] }
4434
clear the screen but keep the terminal's scrollback buffer
clear -x
[ "clear_2", "clear_3", "clear_7" ]
clear
clear
true
{ "token": [ "-x", "|main|" ], "oracle_man": [ [ "clear_2", "clear_7" ], [ "clear_3", "clear_4" ] ] }
4435
indicate the type of terminal to clean (defaults to the value of the environment variable `term`)
clear -T {{type_of_terminal}}
[ "clear_2", "clear_3", "clear_5" ]
clear
clear
true
{ "token": [ "-T", "|main|" ], "oracle_man": [ [ "clear_2", "clear_5" ], [ "clear_3", "clear_4" ] ] }
4436
show the version of `ncurses` used by `clear`
clear -V
[ "clear_2", "clear_3", "clear_6" ]
clear
clear
true
{ "token": [ "-V", "|main|" ], "oracle_man": [ [ "clear_2", "clear_6" ], [ "clear_3", "clear_4" ] ] }
4443
inspect the headers of a file
xsv headers {{path/to/file.csv}}
[ "xsv_3" ]
xsv
xsv
true
{ "token": [ "headers", "|main|" ], "oracle_man": [ [], [ "xsv_3", "xsv_4" ] ] }
4444
count the number of entries
xsv count {{path/to/file.csv}}
[ "xsv_3" ]
xsv
xsv
true
{ "token": [ "count", "|main|" ], "oracle_man": [ [], [ "xsv_3", "xsv_4" ] ] }
4445
get an overview of the shape of entries
xsv stats {{path/to/file.csv}} | xsv table
[ "xsv_3" ]
xsv
xsv
true
{ "token": [ "stats", "table", "|main|" ], "oracle_man": [ [], [], [ "xsv_3", "xsv_4" ] ] }
4446
select a few columns
xsv select {{column_a,column_b}} {{path/to/file.csv}}
[ "xsv_3" ]
xsv
xsv
true
{ "token": [ "select", "|main|" ], "oracle_man": [ [], [ "xsv_3", "xsv_4" ] ] }
4447
show 10 random entries
xsv sample {{10}} {{path/to/file.csv}}
[ "xsv_3" ]
xsv
xsv
true
{ "token": [ "sample", "|main|" ], "oracle_man": [ [], [ "xsv_3", "xsv_4" ] ] }
4448
join a column from one file to another
xsv join --no-case {{column_a}} {{path/to/file/a.csv}} {{column_b}} {{path/to/file/b.csv}} | xsv table
[ "xsv_3" ]
xsv
xsv
true
{ "token": [ "join", "--no-case", "table", "|main|" ], "oracle_man": [ [], [], [], [ "xsv_3", "xsv_4" ] ] }
4451
render a `png` image with a filename based on the input filename and output format (uppercase o)
fdp -T {{png}} -O {{path/to/input.gv}}
[ "fdp_3", "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ]
fdp
fdp
true
{ "token": [ "-T", "-O", "|main|" ], "oracle_man": [ [ "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ], [ "fdp_112" ], [ "fdp_3", "fdp_4", "fdp_5", "fdp_6", "fdp_7", "fdp_8", "fdp_9", "fdp_10", "fdp_11" ] ] }
4452
render a `svg` image with the specified output filename (lowercase o)
fdp -T {{svg}} -o {{path/to/image.svg}} {{path/to/input.gv}}
[ "fdp_3", "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112", "fdp_120" ]
fdp
fdp
true
{ "token": [ "-T", "-o", "|main|" ], "oracle_man": [ [ "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ], [ "fdp_120" ], [ "fdp_3", "fdp_4", "fdp_5", "fdp_6", "fdp_7", "fdp_8", "fdp_9", "fdp_10", "fdp_11" ] ] }
4453
render the output in `ps`, `pdf`, `svg`, `fig`, `png`, `gif`, `jpg`, `json`, or `dot` format
fdp -T {{format}} -O {{path/to/input.gv}}
[ "fdp_3", "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ]
fdp
fdp
true
{ "token": [ "-T", "-O", "|main|" ], "oracle_man": [ [ "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ], [ "fdp_112" ], [ "fdp_3", "fdp_4", "fdp_5", "fdp_6", "fdp_7", "fdp_8", "fdp_9", "fdp_10", "fdp_11" ] ] }
4454
render a `gif` image using stdin and stdout
echo "{{digraph {this -> that} }}" | fdp -T {{gif}} > {{path/to/image.gif}}
[ "fdp_3", "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ]
fdp
fdp
true
{ "token": [ "echo", "-T", "|main|" ], "oracle_man": [ [], [ "fdp_12", "fdp_13", "fdp_14", "fdp_45", "fdp_109", "fdp_112" ], [ "fdp_3", "fdp_4", "fdp_5", "fdp_6", "fdp_7", "fdp_8", "fdp_9", "fdp_10", "fdp_11" ] ] }
4455
display help
fdp -?
[ "fdp_3", "fdp_129" ]
fdp
fdp
true
{ "token": [ "-?", "|main|" ], "oracle_man": [ [ "fdp_129" ], [ "fdp_3", "fdp_4", "fdp_5", "fdp_6", "fdp_7", "fdp_8", "fdp_9", "fdp_10", "fdp_11" ] ] }
4456
produce three tabseparated columns lines only in first file, lines only in second file and common lines
comm {{file1}} {{file2}}
[ "comm_4" ]
comm
comm
true
{ "token": [ "|main|" ], "oracle_man": [ [ "comm_4", "comm_5", "comm_6" ] ] }
4457
print only lines common to both files
comm -12 {{file1}} {{file2}}
[ "comm_3", "comm_4", "comm_55", "comm_60", "comm_62" ]
comm
comm
true
{ "token": [ "-12", "|main|" ], "oracle_man": [ [ "comm_3", "comm_55", "comm_60", "comm_62" ], [ "comm_4", "comm_5", "comm_6" ] ] }
4458
print only lines common to both files, reading one file from stdin
cat {{file1}} | comm -12 - {{file2}}
[ "comm_3", "comm_4", "comm_6", "comm_9", "comm_10", "comm_11", "comm_13", "comm_14", "comm_20", "comm_22", "comm_26", "comm_27", "comm_29", "comm_32", "comm_33", "comm_34", "comm_37", "comm_38", "comm_39", "comm_40", "comm_50", "comm_55", "comm_56", "comm_58", "comm_60", "comm_62" ]
comm
comm
true
{ "token": [ "cat", "-12", "-", "|main|" ], "oracle_man": [ [], [ "comm_3", "comm_55", "comm_60", "comm_62" ], [ "comm_3", "comm_6", "comm_9", "comm_10", "comm_11", "comm_13", "comm_14", "comm_20", "comm_22", "comm_26", "comm_27", "comm_29", "comm_32", "comm_33", "comm_34", "comm_37", "comm_38", "comm_39", "comm_40", "comm_50", "comm_55", "comm_56", "comm_58", "comm_60", "comm_62" ], [ "comm_4", "comm_5", "comm_6" ] ] }
4459
get lines only found in first file, saving the result to a third file
comm -23 {{file1}} {{file2}} > {{file1_only}}
[ "comm_4", "comm_58", "comm_62" ]
comm
comm
true
{ "token": [ "-23", "|main|" ], "oracle_man": [ [ "comm_58", "comm_62" ], [ "comm_4", "comm_5", "comm_6" ] ] }
4460
print lines only found in second file, when the files aren't sorted
comm -13 <(sort {{file1}}) <(sort {{file2}})
[ "comm_4", "comm_11", "comm_26", "comm_34" ]
comm
comm
true
{ "token": [ "-13", "(sort", "|main|" ], "oracle_man": [ [ "comm_11", "comm_26", "comm_34" ], [], [ "comm_4", "comm_5", "comm_6" ] ] }
4461
convert a sam input file to bam stream and save to file
samtools view -S -b {{input.sam}} > {{output.bam}}
[ "samtools_2", "samtools_34", "samtools_35", "samtools_41", "samtools_51", "samtools_56", "samtools_74", "samtools_76", "samtools_87", "samtools_93", "samtools_115", "samtools_126", "samtools_128", "samtools_130", "samtools_160", "samtools_163", "samtools_165", "samtools_182", "samtools_201", "samtools_203", "samtools_206" ]
samtools
samtools
true
{ "token": [ "view", "-S", "-b", "|main|" ], "oracle_man": [ [ "samtools_2", "samtools_41", "samtools_160", "samtools_163", "samtools_165", "samtools_201", "samtools_206" ], [ "samtools_56", "samtools_115", "samtools_128" ], [ "samtools_2", "samtools_34", "samtools_51", "samtools_74", "samtools_76", "samtools_87", "samtools_93", "samtools_126", "samtools_130", "samtools_182", "samtools_201", "samtools_203" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4462
take input from stdin () and print the sam header and any reads overlapping a specific region to stdout
{{other_command}} | samtools view -h - chromosome:start-end
[ "samtools_1", "samtools_2", "samtools_6", "samtools_7", "samtools_15", "samtools_25", "samtools_29", "samtools_34", "samtools_35", "samtools_36", "samtools_39", "samtools_40", "samtools_41", "samtools_43", "samtools_45", "samtools_48", "samtools_50", "samtools_51", "samtools_52", "samtools_55", "samtools_56", "samtools_57", "samtools_65", "samtools_72", "samtools_74", "samtools_76", "samtools_80", "samtools_82", "samtools_84", "samtools_87", "samtools_89", "samtools_90", "samtools_92", "samtools_93", "samtools_96", "samtools_99", "samtools_103", "samtools_110", "samtools_113", "samtools_114", "samtools_115", "samtools_116", "samtools_117", "samtools_119", "samtools_121", "samtools_123", "samtools_124", "samtools_125", "samtools_126", "samtools_128", "samtools_129", "samtools_130", "samtools_132", "samtools_133", "samtools_134", "samtools_135", "samtools_136", "samtools_138", "samtools_144", "samtools_145", "samtools_147", "samtools_149", "samtools_160", "samtools_161", "samtools_163", "samtools_165", "samtools_166", "samtools_169", "samtools_171", "samtools_175", "samtools_178", "samtools_181", "samtools_182", "samtools_186", "samtools_188", "samtools_192", "samtools_193", "samtools_194", "samtools_195", "samtools_199", "samtools_201", "samtools_203", "samtools_206" ]
samtools
samtools
true
{ "token": [ "view", "-h", "-", "chromosome:start-end", "|main|" ], "oracle_man": [ [ "samtools_2", "samtools_41", "samtools_160", "samtools_163", "samtools_165", "samtools_201", "samtools_206" ], [ "samtools_87", "samtools_89", "samtools_93", "samtools_130", "samtools_133", "samtools_163" ], [ "samtools_1", "samtools_2", "samtools_6", "samtools_7", "samtools_15", "samtools_25", "samtools_29", "samtools_34", "samtools_36", "samtools_39", "samtools_40", "samtools_43", "samtools_45", "samtools_48", "samtools_50", "samtools_51", "samtools_52", "samtools_55", "samtools_56", "samtools_57", "samtools_65", "samtools_72", "samtools_74", "samtools_76", "samtools_80", "samtools_82", "samtools_84", "samtools_87", "samtools_89", "samtools_90", "samtools_92", "samtools_93", "samtools_96", "samtools_99", "samtools_103", "samtools_110", "samtools_113", "samtools_114", "samtools_115", "samtools_116", "samtools_117", "samtools_119", "samtools_121", "samtools_123", "samtools_124", "samtools_125", "samtools_126", "samtools_128", "samtools_129", "samtools_130", "samtools_132", "samtools_133", "samtools_134", "samtools_135", "samtools_136", "samtools_138", "samtools_144", "samtools_145", "samtools_147", "samtools_149", "samtools_160", "samtools_161", "samtools_163", "samtools_165", "samtools_166", "samtools_169", "samtools_171", "samtools_175", "samtools_178", "samtools_181", "samtools_182", "samtools_186", "samtools_188", "samtools_192", "samtools_193", "samtools_194", "samtools_195", "samtools_199", "samtools_201", "samtools_203", "samtools_206" ], [], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4463
sort file and save to bam (the output format is automatically determined from the output file's extension)
samtools sort {{input}} -o {{output.bam}}
[ "samtools_2", "samtools_6", "samtools_7", "samtools_29", "samtools_35", "samtools_48", "samtools_55", "samtools_57", "samtools_93", "samtools_119", "samtools_128", "samtools_130", "samtools_135", "samtools_136", "samtools_138", "samtools_160", "samtools_163", "samtools_165" ]
samtools
samtools
true
{ "token": [ "sort", "-o", "|main|" ], "oracle_man": [ [ "samtools_6", "samtools_55" ], [ "samtools_2", "samtools_6", "samtools_7", "samtools_29", "samtools_48", "samtools_55", "samtools_57", "samtools_93", "samtools_119", "samtools_128", "samtools_130", "samtools_135", "samtools_136", "samtools_138", "samtools_160", "samtools_163", "samtools_165" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4464
index a sorted bam file (creates {{sorted_input.bam.bai}})
samtools index {{sorted_input.bam}}
[ "samtools_5", "samtools_35", "samtools_38", "samtools_51", "samtools_53" ]
samtools
samtools
true
{ "token": [ "index", "|main|" ], "oracle_man": [ [ "samtools_5", "samtools_38", "samtools_51", "samtools_53" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4465
print alignment statistics about a file
samtools flagstat {{sorted_input}}
[ "samtools_9", "samtools_35", "samtools_66" ]
samtools
samtools
true
{ "token": [ "flagstat", "|main|" ], "oracle_man": [ [ "samtools_9", "samtools_66" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4466
count alignments to each index (chromosome / contig)
samtools idxstats {{sorted_indexed_input}}
[ "samtools_8", "samtools_35", "samtools_62" ]
samtools
samtools
true
{ "token": [ "idxstats", "|main|" ], "oracle_man": [ [ "samtools_8", "samtools_62" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4467
merge multiple files
samtools merge {{output}} {{input1 input2 …}}
[ "samtools_17", "samtools_35", "samtools_87" ]
samtools
samtools
true
{ "token": [ "merge", "|main|" ], "oracle_man": [ [ "samtools_17", "samtools_87" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4468
split input file according to read groups
samtools split {{merged_input}}
[ "samtools_18", "samtools_35", "samtools_91" ]
samtools
samtools
true
{ "token": [ "split", "|main|" ], "oracle_man": [ [ "samtools_18", "samtools_91" ], [ "samtools_35", "samtools_36", "samtools_37", "samtools_38" ] ] }
4469
compare 2 images
compare {{image1.png}} {{image2.png}} {{diff.png}}
[ "compare_5" ]
compare
compare
true
{ "token": [ "|main|" ], "oracle_man": [ [ "compare_5", "compare_6", "compare_7", "compare_8", "compare_9", "compare_10", "compare_11", "compare_12", "compare_13" ] ] }
4470
compare 2 images using a custom metric
compare -verbose -metric {{PSNR}} {{image1.png}} {{image2.png}} {{diff.png}}
[ "compare_5" ]
compare
compare
true
{ "token": [ "-verbose", "-metric", "|main|" ], "oracle_man": [ [ "compare_5" ], [ "compare_5" ], [ "compare_5", "compare_6", "compare_7", "compare_8", "compare_9", "compare_10", "compare_11", "compare_12", "compare_13" ] ] }
4471
recursively find files matching the given pattern in the current directory
fd {{pattern}}
[ "fd_3" ]
fd
fd
true
{ "token": [ "|main|" ], "oracle_man": [ [ "fd_3" ] ] }
4472
find files that begin with "foo"
fd {{'^foo'}}
[ "fd_3" ]
fd
fd
true
{ "token": [ "|main|" ], "oracle_man": [ [ "fd_3" ] ] }
4473
find files with a specific extension
fd --extension {{txt}}
[ "fd_3", "fd_46" ]
fd
fd
true
{ "token": [ "--extension", "|main|" ], "oracle_man": [ [ "fd_46" ], [ "fd_3" ] ] }
4474
find files in a specific directory
fd {{pattern}} {{path/to/directory}}
[ "fd_3" ]
fd
fd
true
{ "token": [ "|main|" ], "oracle_man": [ [ "fd_3" ] ] }
4475
include ignored and hidden files in the search
fd --hidden --no-ignore {{pattern}}
[ "fd_3", "fd_4", "fd_5", "fd_13", "fd_14" ]
fd
fd
true
{ "token": [ "--hidden", "--no-ignore", "|main|" ], "oracle_man": [ [ "fd_4", "fd_13" ], [ "fd_5", "fd_13", "fd_14" ], [ "fd_3" ] ] }
4476
execute a command on each search result returned
fd {{pattern}} --exec {{command}}
[ "fd_3", "fd_21", "fd_79", "fd_80", "fd_95" ]
fd
fd
true
{ "token": [ "--exec", "|main|" ], "oracle_man": [ [ "fd_21", "fd_79", "fd_80", "fd_95" ], [ "fd_3" ] ] }