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Performance difference issue

#3
by PoTaToMonster - opened

Hi, thank you so much for this astonishing work. I really appreciate your efforts.
I have a question regarding the performance difference.
After installing the environment by running

pip install -r requirements/dev_3.11.txt

I successfully finish running the rxrx3_core_benchmarks_openphenom.ipynb without doing any modification.

However, I find the performance of gene-gene interaction recall shown in the notebook as
image.png
But the official paper reported
image.png

I wonder what step did I miss or I should do some corresponding modification to the evaluation steps to obtain the identical performance from OpenPhenome S/16.

Thank you for your time reading this. I've also write the issue at the benchmark github. Kindly request for any help.

PoTaToMonster changed discussion title from Performance difference to Performance difference issue

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