Performance difference issue
#3
by
PoTaToMonster
- opened
Hi, thank you so much for this astonishing work. I really appreciate your efforts.
I have a question regarding the performance difference.
After installing the environment by running
pip install -r requirements/dev_3.11.txt
I successfully finish running the rxrx3_core_benchmarks_openphenom.ipynb without doing any modification.
However, I find the performance of gene-gene interaction recall shown in the notebook as
But the official paper reported
I wonder what step did I miss or I should do some corresponding modification to the evaluation steps to obtain the identical performance from OpenPhenome S/16.
Thank you for your time reading this. I've also write the issue at the benchmark github. Kindly request for any help.
PoTaToMonster
changed discussion title from
Performance difference
to Performance difference issue