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| title: Bioclip 2 Demo | |
| emoji: 😻 | |
| colorFrom: pink | |
| colorTo: gray | |
| sdk: gradio | |
| sdk_version: 5.33.0 | |
| app_file: app.py | |
| pinned: false | |
| license: mit | |
| models: | |
| - imageomics/bioclip-2 | |
| datasets: | |
| - imageomics/TreeOfLife-200M | |
| This app is modified from the original [BioCLIP Demo](https://huggingface.co/spaces/imageomics/bioclip-demo) to run inference with [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) and uses [pybioclip](https://github.com/Imageomics/pybioclip). | |
| Due to space persistent storage limitations, embeddings are fetched from the [TreeOfLife-200M repo](https://huggingface.co/datasets/imageomics/TreeOfLife-200M). The images will be retrieved from an S3 bucket, as with the origin, described below. | |
| Note that if this space is duplicated, the sample image portion **will not work**. | |
| **bioclip-2/metadata.parquet:** metadata file for fetching [TreeOfLife-200M](https://huggingface.co/datasets/imageomics/TreeOfLife-200M) sample images (up to 3 available per taxa) from an S3 bucket. | |
| - `uuid`: unique identifier for the image within the TreeOfLife-200M dataset. | |
| - `eol_page_id`: identifier of EOL page for the most specific taxa of the image (where available). Note that an image's association to a particular page ID may change with updates to the EOL (or image provider's) hierarchy. However, EOL taxon page IDs are stable. "https://eol.org/pages/" + `eol_page_id` links to the page. | |
| - `gbif_id`: GBIF identifier for the occurrence from which the image is sourced. | |
| - `gbif_taxon_id`: identifier used by GBIF for the most specific taxa of the image (where available). "https://gbif.org/species/" + `gbif_taxon_id` links to the page. | |
| - `kingdom`: kingdom to which the subject of the image belongs (all `Animalia`). | |
| - `phylum`: phylum to which the subject of the image belongs. | |
| - `class`: class to which the subject of the image belongs. | |
| - `order`: order to which the subject of the image belongs. | |
| - `family`: family to which the subject of the image belongs. | |
| - `genus`: genus to which the subject of the image belongs. | |
| - `species`: species to which the subject of the image belongs. | |
| - `file_path`: image filepath to fetch image from S3 bucket (`<folder>/<uuid>.jpg`, folders are first two characters of the `uuid`). | |