Spaces:
Sleeping
Sleeping
Delete publications_detailed.md
Browse files- publications_detailed.md +0 -82
publications_detailed.md
DELETED
@@ -1,82 +0,0 @@
|
|
1 |
-
# Detailed Publications and Research Contributions
|
2 |
-
|
3 |
-
## BioFusionNet (2024)
|
4 |
-
**Full Title**: "BioFusionNet: Deep Learning-Based Survival Risk Stratification in ER+ Breast Cancer Through Multifeature and Multimodal Data Fusion"
|
5 |
-
|
6 |
-
**Journal**: IEEE Journal of Biomedical and Health Informatics
|
7 |
-
|
8 |
-
**Key Contributions**:
|
9 |
-
- Novel multimodal fusion architecture combining histopathology, genomics, and clinical data
|
10 |
-
- Attention-based feature selection for interpretability
|
11 |
-
- Superior performance compared to existing methods
|
12 |
-
- Clinical validation on large patient cohorts
|
13 |
-
|
14 |
-
**Technical Details**:
|
15 |
-
- Uses ResNet-based feature extraction for histopathology images
|
16 |
-
- Implements cross-attention mechanisms for data fusion
|
17 |
-
- Employs survival analysis with Cox proportional hazards
|
18 |
-
- Achieves C-index of 0.78 on validation datasets
|
19 |
-
|
20 |
-
**Impact**: This work provides clinicians with a comprehensive tool for patient risk assessment, enabling personalized treatment planning.
|
21 |
-
<!-- This is code for this paper -->
|
22 |
-
**GitHub**: [raktim-mondol/BioFusionNet](https://github.com/raktim-mondol/BioFusionNet)
|
23 |
-
|
24 |
-
## hist2RNA (2023)
|
25 |
-
**Full Title**: "hist2RNA: An Efficient Deep Learning Architecture to Predict Gene Expression from Breast Cancer Histopathology Images"
|
26 |
-
|
27 |
-
**Journal**: Cancers
|
28 |
-
|
29 |
-
**Key Contributions**:
|
30 |
-
- Direct prediction of gene expression from tissue images
|
31 |
-
- Efficient architecture suitable for clinical deployment
|
32 |
-
- Identification of morphology-gene expression relationships
|
33 |
-
- Validation across multiple cancer datasets
|
34 |
-
|
35 |
-
**Technical Details**:
|
36 |
-
- Custom CNN architecture optimized for gene expression prediction
|
37 |
-
- Multi-task learning framework
|
38 |
-
- Attention mechanisms for spatial feature importance
|
39 |
-
- Correlation analysis with known biological pathways
|
40 |
-
|
41 |
-
**Impact**: Enables gene expression profiling without expensive molecular assays, making personalized medicine more accessible.
|
42 |
-
<!-- This is code for this paper -->
|
43 |
-
**GitHub**: [raktim-mondol/hist2RNA](https://github.com/raktim-mondol/hist2RNA)
|
44 |
-
|
45 |
-
## AFExNet (2021)
|
46 |
-
**Full Title**: "AFExNet: An Adversarial Autoencoder for Differentiating Breast Cancer Sub-types and Extracting Biologically Relevant Genes"
|
47 |
-
|
48 |
-
**Journal**: IEEE/ACM Transactions on Computational Biology and Bioinformatics
|
49 |
-
|
50 |
-
**Key Contributions**:
|
51 |
-
- Adversarial training for robust feature learning
|
52 |
-
- Automatic biomarker discovery
|
53 |
-
- Cancer subtype classification
|
54 |
-
- Biologically interpretable features
|
55 |
-
|
56 |
-
**Technical Details**:
|
57 |
-
- Adversarial autoencoder architecture
|
58 |
-
- Gene selection based on reconstruction importance
|
59 |
-
- Validation on TCGA datasets
|
60 |
-
- Pathway enrichment analysis
|
61 |
-
|
62 |
-
**Impact**: Provides insights into cancer biology while achieving high classification accuracy.
|
63 |
-
<!-- This is code for this paper -->
|
64 |
-
**GitHub**: [raktim-mondol/breast-cancer-sub-types](https://github.com/raktim-mondol/breast-cancer-sub-types)
|
65 |
-
|
66 |
-
## Ongoing Research
|
67 |
-
|
68 |
-
### Multimodal Foundation Models
|
69 |
-
- Developing foundation models for medical imaging
|
70 |
-
- Pre-training on large-scale medical datasets
|
71 |
-
- Transfer learning for rare diseases
|
72 |
-
|
73 |
-
### Ongoing Research
|
74 |
-
- Large Language Models (LLMs)
|
75 |
-
- Retrieval-Augmented Generation (RAG)
|
76 |
-
- Fine-tuning and domain adaptation
|
77 |
-
|
78 |
-
|
79 |
-
### AI Ethics in Healthcare
|
80 |
-
- Bias detection and mitigation
|
81 |
-
- Fairness in medical AI
|
82 |
-
- Regulatory compliance frameworks
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|