| license: apache-2.0 | |
| ## Sequence Ontology Node2Vec | |
| This is a simple application of the Node2Vec approach to the Sequence Ontology graph for only ncRNA. | |
| This allows us to calculate the similarity between SO types: | |
| e.g. SO:0001877 (lncRNA) should be very similar to SO:0001463 (lincRNA) but very different to SO:0000651 (cytosolic_LSU_rRNA) | |
| This SO type similarity model is used in our transcripts to genes modelling to compare the SO types of transcripts we are trying to group into genes. |