metadata

license: mit
tags:
  - biology
  - genomics
  - long-context
task_categories:
  - token-classification
configs:
  - config_name: archaea_annotation
    data_files:
      - split: test
        path: archaea_annotation_summary.parquet
  - config_name: bacteria_annotation
    data_files:
      - split: test
        path: bacteria_annotation_summary.parquet

Prokaryotic Genome CDS Annotation Summary

Abouts

In this repository, we present the evaluation datasets for prokaryotic genome annotation tasked. Through comprehensive evaluations, GENERanno-cds-annotator achieves superior accuracy compared to traditional HMM-based methods (e.g., GLIMMER3, GeneMarkS2, Prodigal) and recent LLM-based approaches (e.g., GeneLM), while demonstrating exceptional generalization ability on archaeal genomes.