Datasets:
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---
license: apache-2.0
task_categories:
- text-classification
language:
- en
tags:
- LucaOne
- Bioinformatics
- Protein
- Gene
- RNA
- DNA
- Nucleic Acid
- Interaction
- AI4Biology
- Bio
- Biology
- AI4Science
pretty_name: LucaGroup/LucaOne-Downstream-Task-Datasets
---
- split: dev
path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv
- split: test
path: dataset/ncRNAFam/gene/multi_class/test/test.csv
- split: label
path: dataset/ncRNAFam/gene/multi_class/label.txt
- config_name: ncRPI
data_files:
- split: train
path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
- split: dev
path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv
- split: test
path: dataset/ncRPI/gene_protein/binary_class/test/test.csv
- config_name: PPI
data_files:
- split: train
path: dataset/PPI/protein/binary_class/train/train.csv
- split: dev
path: dataset/PPI/protein/binary_class/dev/dev.csv
- split: test
path: dataset/PPI/protein/binary_class/test/test.csv
- config_name: ProtLoc
data_files:
- split: train
path: dataset/ProtLoc/protein/multi_class/train/train.csv
- split: dev
path: dataset/ProtLoc/protein/multi_class/dev/dev.csv
- split: test
path: dataset/ProtLoc/protein/multi_class/test/test.csv
- config_name: ProtLocCDSGene
data_files:
- split: train
path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
- split: dev
path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv
- split: test
path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
- config_name: ProtLocCDSProt
data_files:
- split: train
path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
- split: dev
path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv
- split: test
path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv
- split: label
path: dataset/ProtLocCDSProt/protein/multi_class/label.txt
- config_name: ProtStab
data_files:
- split: train
path: dataset/ProtStab/protein/regression/train/train.csv
- split: dev
path: dataset/ProtStab/protein/regression/dev/dev.csv
- split: test
path: dataset/ProtStab/protein/regression/test/test.csv
- config_name: SpeciesTax
data_files:
- split: train
path: dataset/SpeciesTax/gene/multi_class/train/train.csv
- split: dev
path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv
- split: test
path: dataset/SpeciesTax/gene/multi_class/test/test.csv
- config_name: SupKTax
data_files:
- split: train
path: dataset/SupKTax/gene/multi_class/train/train.csv
- split: dev
path: dataset/SupKTax/gene/multi_class/dev/dev.csv
- split: test
path: dataset/SupKTax/gene/multi_class/test/test.csv
---
# LucaOne-Downstream-Task-Datasets
This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4).
## Dataset Structure
This dataset includes three splits and a label info file:
- `train`(training dataset)
- `dev` (validation dataset)
- `test` (testing dataset)
- `label.txt` (label name to label index in `*.csv`, label_idx=${the line number of label_name - 1})
## Usage:
```python
from datasets import load_dataset
# load ncRPI dataset
ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI")
```
## Github
https://github.com/LucaOne/ - split: dev
path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv
- split: test
path: dataset/ncRNAFam/gene/multi_class/test/test.csv
- split: label
path: dataset/ncRNAFam/gene/multi_class/label.txt
- config_name: ncRPI
data_files:
- split: train
path: dataset/ncRPI/gene_protein/binary_class/train/train.csv
- split: dev
path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv
- split: test
path: dataset/ncRPI/gene_protein/binary_class/test/test.csv
- config_name: PPI
data_files:
- split: train
path: dataset/PPI/protein/binary_class/train/train.csv
- split: dev
path: dataset/PPI/protein/binary_class/dev/dev.csv
- split: test
path: dataset/PPI/protein/binary_class/test/test.csv
- config_name: ProtLoc
data_files:
- split: train
path: dataset/ProtLoc/protein/multi_class/train/train.csv
- split: dev
path: dataset/ProtLoc/protein/multi_class/dev/dev.csv
- split: test
path: dataset/ProtLoc/protein/multi_class/test/test.csv
- config_name: ProtLocCDSGene
data_files:
- split: train
path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv
- split: dev
path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv
- split: test
path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv
- config_name: ProtLocCDSProt
data_files:
- split: train
path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv
- split: dev
path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv
- split: test
path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv
- split: label
path: dataset/ProtLocCDSProt/protein/multi_class/label.txt
- config_name: ProtStab
data_files:
- split: train
path: dataset/ProtStab/protein/regression/train/train.csv
- split: dev
path: dataset/ProtStab/protein/regression/dev/dev.csv
- split: test
path: dataset/ProtStab/protein/regression/test/test.csv
- config_name: SpeciesTax
data_files:
- split: train
path: dataset/SpeciesTax/gene/multi_class/train/train.csv
- split: dev
path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv
- split: test
path: dataset/SpeciesTax/gene/multi_class/test/test.csv
- config_name: SupKTax
data_files:
- split: train
path: dataset/SupKTax/gene/multi_class/train/train.csv
- split: dev
path: dataset/SupKTax/gene/multi_class/dev/dev.csv
- split: test
path: dataset/SupKTax/gene/multi_class/test/test.csv
---
# LucaOne-Downstream-Task-Datasets
This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4).
## Dataset Structure
This dataset includes three splits and a label info file:
- `train`(training dataset)
- `dev` (validation dataset)
- `test` (testing dataset)
- `label.txt` (label name to label index in `*.csv`, label_idx=${the line number of label_name - 1})
## Usage:
```python
from datasets import load_dataset
# load ncRPI dataset
ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI")
```
## Github
https://github.com/LucaOne/ |