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--- |
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license: apache-2.0 |
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task_categories: |
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- text-classification |
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language: |
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- en |
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tags: |
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- LucaOne |
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- Bioinformatics |
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- Protein |
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- Gene |
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- RNA |
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- DNA |
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- Nucleic Acid |
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- Interaction |
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- AI4Biology |
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- Bio |
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- Biology |
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- AI4Science |
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pretty_name: LucaGroup/LucaOne-Downstream-Task-Datasets |
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--- |
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- split: dev |
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path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ncRNAFam/gene/multi_class/test/test.csv |
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- split: label |
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path: dataset/ncRNAFam/gene/multi_class/label.txt |
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- config_name: ncRPI |
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data_files: |
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- split: train |
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path: dataset/ncRPI/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/ncRPI/gene_protein/binary_class/test/test.csv |
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- config_name: PPI |
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data_files: |
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- split: train |
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path: dataset/PPI/protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/PPI/protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/PPI/protein/binary_class/test/test.csv |
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- config_name: ProtLoc |
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data_files: |
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- split: train |
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path: dataset/ProtLoc/protein/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLoc/protein/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLoc/protein/multi_class/test/test.csv |
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- config_name: ProtLocCDSGene |
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data_files: |
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- split: train |
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path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv |
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- config_name: ProtLocCDSProt |
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data_files: |
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- split: train |
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path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv |
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- split: label |
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path: dataset/ProtLocCDSProt/protein/multi_class/label.txt |
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- config_name: ProtStab |
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data_files: |
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- split: train |
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path: dataset/ProtStab/protein/regression/train/train.csv |
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- split: dev |
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path: dataset/ProtStab/protein/regression/dev/dev.csv |
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- split: test |
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path: dataset/ProtStab/protein/regression/test/test.csv |
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- config_name: SpeciesTax |
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data_files: |
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- split: train |
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path: dataset/SpeciesTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/SpeciesTax/gene/multi_class/test/test.csv |
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- config_name: SupKTax |
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data_files: |
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- split: train |
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path: dataset/SupKTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/SupKTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/SupKTax/gene/multi_class/test/test.csv |
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--- |
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# LucaOne-Downstream-Task-Datasets |
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This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4). |
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## Dataset Structure |
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This dataset includes three splits and a label info file: |
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- `train`(training dataset) |
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- `dev` (validation dataset) |
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- `test` (testing dataset) |
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- `label.txt` (label name to label index in `*.csv`, label_idx=${the line number of label_name - 1}) |
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## Usage: |
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```python |
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from datasets import load_dataset |
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# load ncRPI dataset |
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ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI") |
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``` |
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## Github |
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https://github.com/LucaOne/ - split: dev |
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path: dataset/ncRNAFam/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ncRNAFam/gene/multi_class/test/test.csv |
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- split: label |
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path: dataset/ncRNAFam/gene/multi_class/label.txt |
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- config_name: ncRPI |
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data_files: |
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- split: train |
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path: dataset/ncRPI/gene_protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/ncRPI/gene_protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/ncRPI/gene_protein/binary_class/test/test.csv |
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- config_name: PPI |
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data_files: |
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- split: train |
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path: dataset/PPI/protein/binary_class/train/train.csv |
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- split: dev |
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path: dataset/PPI/protein/binary_class/dev/dev.csv |
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- split: test |
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path: dataset/PPI/protein/binary_class/test/test.csv |
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- config_name: ProtLoc |
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data_files: |
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- split: train |
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path: dataset/ProtLoc/protein/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLoc/protein/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLoc/protein/multi_class/test/test.csv |
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- config_name: ProtLocCDSGene |
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data_files: |
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- split: train |
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path: dataset/ProtLocCDSGene/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLocCDSGene/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLocCDSGene/gene/multi_class/test/test.csv |
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- config_name: ProtLocCDSProt |
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data_files: |
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- split: train |
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path: dataset/ProtLocCDSProt/protein/multi_class/train/train.csv |
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- split: dev |
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path: dataset/ProtLocCDSProt/protein/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/ProtLocCDSProt/protein/multi_class/test/test.csv |
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- split: label |
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path: dataset/ProtLocCDSProt/protein/multi_class/label.txt |
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- config_name: ProtStab |
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data_files: |
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- split: train |
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path: dataset/ProtStab/protein/regression/train/train.csv |
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- split: dev |
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path: dataset/ProtStab/protein/regression/dev/dev.csv |
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- split: test |
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path: dataset/ProtStab/protein/regression/test/test.csv |
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- config_name: SpeciesTax |
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data_files: |
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- split: train |
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path: dataset/SpeciesTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/SpeciesTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/SpeciesTax/gene/multi_class/test/test.csv |
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- config_name: SupKTax |
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data_files: |
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- split: train |
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path: dataset/SupKTax/gene/multi_class/train/train.csv |
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- split: dev |
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path: dataset/SupKTax/gene/multi_class/dev/dev.csv |
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- split: test |
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path: dataset/SupKTax/gene/multi_class/test/test.csv |
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--- |
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# LucaOne-Downstream-Task-Datasets |
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|
This directory includes all the downstream task datasets of the LucaOne paper (https://www.nature.com/articles/s42256-025-01044-4). |
|
|
|
|
|
|
|
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## Dataset Structure |
|
|
|
|
|
|
|
|
This dataset includes three splits and a label info file: |
|
|
|
|
|
|
|
|
- `train`(training dataset) |
|
|
- `dev` (validation dataset) |
|
|
- `test` (testing dataset) |
|
|
- `label.txt` (label name to label index in `*.csv`, label_idx=${the line number of label_name - 1}) |
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## Usage: |
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```python |
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from datasets import load_dataset |
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# load ncRPI dataset |
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ds = load_dataset("LucaGroup/LucaOne-Downstream-Task-Datasets", name="ncRPI") |
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``` |
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## Github |
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https://github.com/LucaOne/ |
