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fb320545__Gene__PTPRU__ENSG00000060656___RefSeq
|
[Name] PTPRU-007 [Transcript ID] ENST00000493601 [bp] 695 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [RefSeq]
|
-
|
[
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],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
fb320545__Gene__PTPRU__ENSG00000060656___RefSeq
|
[Name] PTPRU-009 [Transcript ID] ENST00000527027 [bp] 619 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [RefSeq]
|
-
|
[
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],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
fb320545__Gene__PTPRU__ENSG00000060656___RefSeq
|
[Name] PTPRU-004 [Transcript ID] ENST00000465525 [bp] 1650 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [RefSeq]
|
-
|
[
[
"N",
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"N",
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],
[
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[
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"N",
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],
[
"N",
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"N",
"P",
"_",
"0",
"0",
"5",
"6",
"9",
"5"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
fb320545__Gene__PTPRU__ENSG00000060656___RefSeq
|
[Name] PTPRU-010 [Transcript ID] ENST00000531385 [bp] 737 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [RefSeq]
|
-
|
[
[
"N",
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" ",
"N",
"P",
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"9"
],
[
"N",
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"0",
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[
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"N",
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],
[
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"N",
"P",
"_",
"0",
"0",
"5",
"6",
"9",
"5"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
fb320545__Gene__PTPRU__ENSG00000060656___RefSeq
|
[Name] PTPRU-005 [Transcript ID] ENST00000492954 [bp] 625 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [RefSeq]
|
-
|
[
[
"N",
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"_",
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"7",
"8",
" ",
"N",
"P",
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"5",
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"9"
],
[
"N",
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"0",
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],
[
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"N",
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],
[
"N",
"M",
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"0",
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"4",
" ",
"N",
"P",
"_",
"0",
"0",
"5",
"6",
"9",
"5"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
fb320545__Gene__PTPRU__ENSG00000060656___RefSeq
|
[Name] PTPRU-011 [Transcript ID] ENST00000526080 [bp] 424 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [RefSeq]
|
-
|
[
[
"N",
"M",
"_",
"1",
"3",
"3",
"1",
"7",
"8",
" ",
"N",
"P",
"_",
"5",
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"9"
],
[
"N",
"M",
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"0",
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"0",
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],
[
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],
[
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"0",
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"4",
" ",
"N",
"P",
"_",
"0",
"0",
"5",
"6",
"9",
"5"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-001 [Transcript ID] ENST00000373779 [bp] 5579 [Protein] 1436aa [Translation ID] ENSP00000362884 [CCDS] CCDS335 [UniProt] Q92729 [RefSeq] NM_133178 NP_573439 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-008 [Transcript ID] ENST00000428026 [bp] 5550 [Protein] 1433aa [Translation ID] ENSP00000392332 [CCDS] CCDS53290 [UniProt] Q92729 [RefSeq] NM_001195001 NP_001181930 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-002 [Transcript ID] ENST00000460170 [bp] 5337 [Protein] 1440aa [Translation ID] ENSP00000432906 [CCDS] CCDS44098 [UniProt] Q92729 [RefSeq] NM_133177 NP_573438 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-003 [Transcript ID] ENST00000345512 [bp] 4470 [Protein] 1446aa [Translation ID] ENSP00000334941 [CCDS] CCDS334 [UniProt] Q92729 [RefSeq] NM_005704 NP_005695 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-006 [Transcript ID] ENST00000415600 [bp] 1590 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-007 [Transcript ID] ENST00000493601 [bp] 695 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-009 [Transcript ID] ENST00000527027 [bp] 619 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-004 [Transcript ID] ENST00000465525 [bp] 1650 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-010 [Transcript ID] ENST00000531385 [bp] 737 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-005 [Transcript ID] ENST00000492954 [bp] 625 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
66dcf1c5__Gene__PTPRU__ENSG00000060656___Biotype
|
[Name] PTPRU-011 [Transcript ID] ENST00000526080 [bp] 424 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
3bbab429_t__RAD51_003__ENST00000557850___Biotype
|
[Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
|
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
b33784d4_t__PDPK1_011__ENST00000471311___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-011 (ENST00000471311)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2631348-2633988;t=ENST00000471311
|
1/1438042990112.50_20150728002310-00209-ip-10-236-191-2_436474238_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-001 [Transcript ID] ENST00000461988 [bp] 2522 [Protein] 680aa [Translation ID] ENSP00000419970 [CCDS] CCDS5579 [UniProt] P16435 [RefSeq] NM_000941 NP_000932 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-009 [Transcript ID] ENST00000394893 [bp] 2532 [Protein] 633aa [Translation ID] ENSP00000378355 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-014 [Transcript ID] ENST00000447222 [bp] 2332 [Protein] 725aa [Translation ID] ENSP00000393527 [CCDS] - [UniProt] H0Y4R2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-015 [Transcript ID] ENST00000439269 [bp] 1858 [Protein] 418aa [Translation ID] ENSP00000412490 [CCDS] - [UniProt] E7EMD0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-004 [Transcript ID] ENST00000418341 [bp] 736 [Protein] 62aa [Translation ID] ENSP00000389719 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-019 [Transcript ID] ENST00000421059 [bp] 631 [Protein] 39aa [Translation ID] ENSP00000409881 [CCDS] - [UniProt] C9JQ78 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-018 [Transcript ID] ENST00000439963 [bp] 625 [Protein] 188aa [Translation ID] ENSP00000390540 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-002 [Transcript ID] ENST00000412521 [bp] 586 [Protein] 146aa [Translation ID] ENSP00000409238 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-006 [Transcript ID] ENST00000439297 [bp] 569 [Protein] 54aa [Translation ID] ENSP00000403494 [CCDS] - [UniProt] C9JDE2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-022 [Transcript ID] ENST00000426184 [bp] 565 [Protein] 108aa [Translation ID] ENSP00000400964 [CCDS] - [UniProt] C9JU80 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-020 [Transcript ID] ENST00000432753 [bp] 561 [Protein] 166aa [Translation ID] ENSP00000389409 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-003 [Transcript ID] ENST00000414186 [bp] 548 [Protein] 172aa [Translation ID] ENSP00000399327 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-017 [Transcript ID] ENST00000453773 [bp] 498 [Protein] 140aa [Translation ID] ENSP00000395813 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-021 [Transcript ID] ENST00000449920 [bp] 283 [Protein] 62aa [Translation ID] ENSP00000399556 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-013 [Transcript ID] ENST00000454934 [bp] 2295 [Protein] 189aa [Translation ID] ENSP00000414263 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-007 [Transcript ID] ENST00000448410 [bp] 1104 [Protein] 101aa [Translation ID] ENSP00000399409 [CCDS] - [UniProt] E7EWU0 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-024 [Transcript ID] ENST00000412064 [bp] 1044 [Protein] 211aa [Translation ID] ENSP00000404731 [CCDS] - [UniProt] P16435 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-005 [Transcript ID] ENST00000475509 [bp] 590 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-016 [Transcript ID] ENST00000493973 [bp] 1028 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-012 [Transcript ID] ENST00000496888 [bp] 939 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-011 [Transcript ID] ENST00000487247 [bp] 853 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-010 [Transcript ID] ENST00000460892 [bp] 603 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-008 [Transcript ID] ENST00000471238 [bp] 600 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
3f6058fc_ipt__POR_015__ENST00000439269___Biotype
|
[Name] POR-023 [Transcript ID] ENST00000495770 [bp] 559 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: POR-015 (ENST00000439269)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000127948;r=7:75981911-75986832;t=ENST00000439269
|
1/1438042990112.50_20150728002310-00116-ip-10-236-191-2_412489185_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-002 [Transcript ID] ENST00000467132 [bp] 2660 [Protein] 423aa [Translation ID] ENSP00000450540 [CCDS] CCDS32150 [UniProt] A0A024R6P0 P01011 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-007 [Transcript ID] ENST00000393080 [bp] 1581 [Protein] 423aa [Translation ID] ENSP00000376795 [CCDS] CCDS32150 [UniProt] A0A024R6P0 P01011 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-003 [Transcript ID] ENST00000482740 [bp] 2420 [Protein] 205aa [Translation ID] ENSP00000451119 [CCDS] - [UniProt] G3V3A0 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-006 [Transcript ID] ENST00000555820 [bp] 981 [Protein] 305aa [Translation ID] ENSP00000452246 [CCDS] - [UniProt] G3V595 [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-010 [Transcript ID] ENST00000621603 [bp] 639 [Protein] 46aa [Translation ID] ENSP00000481617 [CCDS] - [UniProt] A0A087WY93 [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-009 [Transcript ID] ENST00000556968 [bp] 1289 [Protein] 216aa [Translation ID] ENSP00000452476 [CCDS] - [UniProt] P01011 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-004 [Transcript ID] ENST00000485588 [bp] 575 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
61be0197_ne__SERPINA3__ENSG00000196136___Biotype
|
[Name] SERPINA3-008 [Transcript ID] ENST00000556388 [bp] 480 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
|
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-001 [Transcript ID] ENSMUST00000030784 [bp] 3331 [Protein] 566aa [Translation ID] ENSMUSP00000030784 [CCDS] CCDS19130 [UniProt] Q91WG5 [RefSeq] NM_145401 NP_663376 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-003 [Transcript ID] ENSMUST00000114975 [bp] 2205 [Protein] 326aa [Translation ID] ENSMUSP00000110626 [CCDS] CCDS51437 [UniProt] Q3TMN8 Q91WG5 [RefSeq] NM_001170555 NM_001170556 NP_001164026 NP_001164027 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-002 [Transcript ID] ENSMUST00000076306 [bp] 2838 [Protein] 443aa [Translation ID] ENSMUSP00000075651 [CCDS] - [UniProt] Q8BIQ9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-004 [Transcript ID] ENSMUST00000150135 [bp] 890 [Protein] 244aa [Translation ID] ENSMUSP00000114978 [CCDS] - [UniProt] D3YUS1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-008 [Transcript ID] ENSMUST00000131486 [bp] 723 [Protein] 191aa [Translation ID] ENSMUSP00000115760 [CCDS] - [UniProt] D3YYW4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-006 [Transcript ID] ENSMUST00000123749 [bp] 211 [Protein] 19aa [Translation ID] ENSMUSP00000117149 [CCDS] - [UniProt] D3Z5V5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-007 [Transcript ID] ENSMUST00000148531 [bp] 458 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-005 [Transcript ID] ENSMUST00000139698 [bp] 2010 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-010 [Transcript ID] ENSMUST00000135525 [bp] 651 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
4ca401c2_e__Prkag2__ENSMUSG00000028944___Biotype
|
[Name] Prkag2-009 [Transcript ID] ENSMUST00000129022 [bp] 600 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
|
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000373779 [bp] 5579 [Protein] 1436aa [Translation ID] ENSP00000362884 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS335 [UniProt] Q92729 [RefSeq] NM_133178 NP_573439 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
PTPRU-001
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000428026 [bp] 5550 [Protein] 1433aa [Translation ID] ENSP00000392332 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53290 [UniProt] Q92729 [RefSeq] NM_001195001 NP_001181930 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
PTPRU-008
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000460170 [bp] 5337 [Protein] 1440aa [Translation ID] ENSP00000432906 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44098 [UniProt] Q92729 [RefSeq] NM_133177 NP_573438 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
PTPRU-002
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000345512 [bp] 4470 [Protein] 1446aa [Translation ID] ENSP00000334941 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS334 [UniProt] Q92729 [RefSeq] NM_005704 NP_005695 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Name]
|
PTPRU-003
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000415600 [bp] 1590 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
PTPRU-006
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000493601 [bp] 695 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
PTPRU-007
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000527027 [bp] 619 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PTPRU-009
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000465525 [bp] 1650 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PTPRU-004
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000531385 [bp] 737 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PTPRU-010
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000492954 [bp] 625 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PTPRU-005
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
9d6d781c__Gene__PTPRU__ENSG00000060656___Name
|
[Transcript ID] ENST00000526080 [bp] 424 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
PTPRU-011
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
|
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
|
0aaf3ca3_t__PRDM5_001__ENST00000264808___Flags
|
[Name] PRDM5-001 [Transcript ID] ENST00000264808 [bp] 5330 [Protein] 630aa [Translation ID] ENSP00000264808 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3716 [UniProt] Q9NQX1 [RefSeq] NM_018699 NP_061169 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRDM5-001 (ENST00000264808)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000138738;r=4:120691915-120922849;t=ENST00000264808
|
1/1438042990112.50_20150728002310-00132-ip-10-236-191-2_425141527_0.json
|
0aaf3ca3_t__PRDM5_001__ENST00000264808___Flags
|
[Name] PRDM5-006 [Transcript ID] ENST00000428209 [bp] 2338 [Protein] 599aa [Translation ID] ENSP00000404832 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75188 [UniProt] Q9NQX1 [RefSeq] NM_001300823 NP_001287752 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRDM5-001 (ENST00000264808)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000138738;r=4:120691915-120922849;t=ENST00000264808
|
1/1438042990112.50_20150728002310-00132-ip-10-236-191-2_425141527_0.json
|
0aaf3ca3_t__PRDM5_001__ENST00000264808___Flags
|
[Name] PRDM5-005 [Transcript ID] ENST00000515109 [bp] 2259 [Protein] 501aa [Translation ID] ENSP00000422309 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75187 [UniProt] Q9NQX1 [RefSeq] NM_001300824 NP_001287753 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRDM5-001 (ENST00000264808)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000138738;r=4:120691915-120922849;t=ENST00000264808
|
1/1438042990112.50_20150728002310-00132-ip-10-236-191-2_425141527_0.json
|
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