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3a1d6e7e__Gene__ERCC5__ENSG00000134899___Biotype
[Name] ERCC5-003 [Transcript ID] ENST00000375958 [bp] 596 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: ERCC5 (ENSG00000134899)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000134899;r=13:102844844-102876001
1/1438042987127.36_20150728002307-00317-ip-10-236-191-2_436338317_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-001 [Transcript ID] ENSMUST00000030784 [bp] 3331 [Protein] 566aa [Translation ID] ENSMUSP00000030784 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS19130 [UniProt] Q91WG5 [RefSeq] NM_145401 NP_663376 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-003 [Transcript ID] ENSMUST00000114975 [bp] 2205 [Protein] 326aa [Translation ID] ENSMUSP00000110626 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS51437 [UniProt] Q3TMN8 Q91WG5 [RefSeq] NM_001170555 NM_001170556 NP_001164026 NP_001164027 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-002 [Transcript ID] ENSMUST00000076306 [bp] 2838 [Protein] 443aa [Translation ID] ENSMUSP00000075651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8BIQ9 [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-004 [Transcript ID] ENSMUST00000150135 [bp] 890 [Protein] 244aa [Translation ID] ENSMUSP00000114978 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YUS1 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-008 [Transcript ID] ENSMUST00000131486 [bp] 723 [Protein] 191aa [Translation ID] ENSMUSP00000115760 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YYW4 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-006 [Transcript ID] ENSMUST00000123749 [bp] 211 [Protein] 19aa [Translation ID] ENSMUSP00000117149 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3Z5V5 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-007 [Transcript ID] ENSMUST00000148531 [bp] 458 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-005 [Transcript ID] ENSMUST00000139698 [bp] 2010 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-010 [Transcript ID] ENSMUST00000135525 [bp] 651 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
5353569a_e__Prkag2__ENSMUSG00000028944___Flags
[Name] Prkag2-009 [Transcript ID] ENSMUST00000129022 [bp] 600 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Mus musculus - Summary - Gene: Prkag2 (ENSMUSG00000028944)
Flags
http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000028944;r=5:24862744-25100642
1/1438042990112.50_20150728002310-00254-ip-10-236-191-2_439167801_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
2f8ab16a_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000441549
1/1438042987127.36_20150728002307-00159-ip-10-236-191-2_424129763_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-002 [Transcript ID] ENST00000467132 [bp] 2660 [Protein] 423aa [Translation ID] ENSP00000450540 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS32150 [UniProt] A0A024R6P0 P01011 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-007 [Transcript ID] ENST00000393080 [bp] 1581 [Protein] 423aa [Translation ID] ENSP00000376795 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS32150 [UniProt] A0A024R6P0 P01011 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-003 [Transcript ID] ENST00000482740 [bp] 2420 [Protein] 205aa [Translation ID] ENSP00000451119 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V3A0 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-006 [Transcript ID] ENST00000555820 [bp] 981 [Protein] 305aa [Translation ID] ENSP00000452246 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V595 [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-010 [Transcript ID] ENST00000621603 [bp] 639 [Protein] 46aa [Translation ID] ENSP00000481617 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WY93 [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-009 [Transcript ID] ENST00000556968 [bp] 1289 [Protein] 216aa [Translation ID] ENSP00000452476 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P01011 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-004 [Transcript ID] ENST00000485588 [bp] 575 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
efda7cb0_ne__SERPINA3__ENSG00000196136___Flags
[Name] SERPINA3-008 [Transcript ID] ENST00000556388 [bp] 480 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SERPINA3 (ENSG00000196136)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196136;r=14:94612384-94624055
1/1438042987127.36_20150728002307-00283-ip-10-236-191-2_429535359_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-003 [Transcript ID] ENST00000371824 [bp] 3966 [Protein] 366aa [Translation ID] ENSP00000360889 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44140 [UniProt] P26378 [RefSeq] NM_001144774 NP_001138246 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-001 [Transcript ID] ENST00000371827 [bp] 3775 [Protein] 366aa [Translation ID] ENSP00000360892 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44138 [UniProt] P26378 [RefSeq] NM_001144776 NP_001138248 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-006 [Transcript ID] ENST00000371819 [bp] 2467 [Protein] 371aa [Translation ID] ENSP00000360884 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS72788 [UniProt] B1APY9 [RefSeq] NM_001294348 NP_001281277 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-201 [Transcript ID] ENST00000448907 [bp] 1951 [Protein] 369aa [Translation ID] ENSP00000399939 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53315 [UniProt] P26378 [RefSeq] NM_001144777 NP_001138249 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-004 [Transcript ID] ENST00000371823 [bp] 1591 [Protein] 380aa [Translation ID] ENSP00000360888 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS553 [UniProt] P26378 [RefSeq] NM_021952 NP_068771 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-002 [Transcript ID] ENST00000357083 [bp] 1442 [Protein] 402aa [Translation ID] ENSP00000349594 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44139 [UniProt] P26378 [RefSeq] NM_001144775 NP_001138247 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-005 [Transcript ID] ENST00000371821 [bp] 3349 [Protein] 385aa [Translation ID] ENSP00000360886 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B1APY8 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-008 [Transcript ID] ENST00000492299 [bp] 2106 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-009 [Transcript ID] ENST00000474675 [bp] 600 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-010 [Transcript ID] ENST00000463650 [bp] 489 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
b472d42c_Gene__ELAVL4__ENSG00000162374___Flags
[Name] ELAVL4-007 [Transcript ID] ENST00000494555 [bp] 458 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ELAVL4 (ENSG00000162374)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162374;r=1:50048014-50203786
1/1438042987127.36_20150728002307-00113-ip-10-236-191-2_427232389_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
712acbb0___PRKACA_002__ENST00000590853___Biotype
[Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-001 [Transcript ID] ENST00000373779 [bp] 5579 [Protein] 1436aa [Translation ID] ENSP00000362884 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [UniProt] Q92729 [RefSeq] NM_133178 NP_573439 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [CCDS]
CCDS335
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-008 [Transcript ID] ENST00000428026 [bp] 5550 [Protein] 1433aa [Translation ID] ENSP00000392332 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [UniProt] Q92729 [RefSeq] NM_001195001 NP_001181930 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [CCDS]
CCDS53290
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-002 [Transcript ID] ENST00000460170 [bp] 5337 [Protein] 1440aa [Translation ID] ENSP00000432906 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [UniProt] Q92729 [RefSeq] NM_133177 NP_573438 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [CCDS]
CCDS44098
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-003 [Transcript ID] ENST00000345512 [bp] 4470 [Protein] 1446aa [Translation ID] ENSP00000334941 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [UniProt] Q92729 [RefSeq] NM_005704 NP_005695 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [CCDS]
CCDS334
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-006 [Transcript ID] ENST00000415600 [bp] 1590 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-007 [Transcript ID] ENST00000493601 [bp] 695 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-009 [Transcript ID] ENST00000527027 [bp] 619 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-004 [Transcript ID] ENST00000465525 [bp] 1650 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-010 [Transcript ID] ENST00000531385 [bp] 737 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-005 [Transcript ID] ENST00000492954 [bp] 625 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
6cbf77f2__Gene__PTPRU__ENSG00000060656___CCDS
[Name] PTPRU-011 [Transcript ID] ENST00000526080 [bp] 424 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [CCDS]
-
[ [ "C", "C", "D", "S", "3", "3", "5" ], [ "C", "C", "D", "S", "5", "3", "2", "9", "0" ], [ "C", "C", "D", "S", "4", "4", "0", "9", "8" ], [ "C", "C", "D", "S", "3", "3", "4" ], [ "-" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PTPRU (ENSG00000060656)
CCDS
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000060656;r=1:29236516-29326813
1/1438042990112.50_20150728002310-00117-ip-10-236-191-2_425317915_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-001 [Transcript ID] ENST00000324856 [bp] 8577 [Protein] 2285aa [Translation ID] ENSP00000320485 [CCDS] CCDS285 [UniProt] O14497 [RefSeq] NM_006015 NP_006006 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-002 [Transcript ID] ENST00000457599 [bp] 6268 [Protein] 2068aa [Translation ID] ENSP00000387636 [CCDS] CCDS44091 [UniProt] O14497 [RefSeq] NM_139135 NP_624361 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-003 [Transcript ID] ENST00000374152 [bp] 5992 [Protein] 1902aa [Translation ID] ENSP00000363267 [CCDS] - [UniProt] O14497 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-009 [Transcript ID] ENST00000430799 [bp] 3978 [Protein] 1182aa [Translation ID] ENSP00000390317 [CCDS] - [UniProt] H0Y488 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-201 [Transcript ID] ENST00000615191 [bp] 3804 [Protein] 1141aa [Translation ID] ENSP00000478955 [CCDS] - [UniProt] A0A087WUV6 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-007 [Transcript ID] ENST00000524572 [bp] 546 [Protein] 123aa [Translation ID] ENSP00000432473 [CCDS] - [UniProt] E9PQW6 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-004 [Transcript ID] ENST00000466382 [bp] 2696 [Protein] 144aa [Translation ID] ENSP00000432368 [CCDS] - [UniProt] H0YCU6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-006 [Transcript ID] ENST00000532781 [bp] 2583 [Protein] 188aa [Translation ID] ENSP00000436692 [CCDS] - [UniProt] H0YEW5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
49e2714f___ARID1A_007__ENST00000524572___Biotype
[Name] ARID1A-005 [Transcript ID] ENST00000430291 [bp] 509 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ARID1A-007 (ENST00000524572)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000117713;r=1:27099455-27107650;t=ENST00000524572
1/1438042990112.50_20150728002310-00079-ip-10-236-191-2_423755538_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
Q9NZG9
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt]
E9PNT5
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]
E9PJ30
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
E9PI54
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
cd6426d5_t__RAD51_003__ENST00000557850___UniProt
[Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt]
H0YD61
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-003 (ENST00000557850)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987372-41023614;t=ENST00000557850
1/1438042990112.50_20150728002310-00174-ip-10-236-191-2_419190678_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name]
PRKACA-001
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
PRKACA-003
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
PRKACA-002
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name]
PRKACA-006
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
PRKACA-010
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
PRKACA-008
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
PRKACA-005
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name]
PRKACA-007
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
PRKACA-004
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
424c671d___PRKACA_002__ENST00000590853___Name
[Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
PRKACA-009
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PRKACA-002 (ENST00000590853)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
1/1438042987127.36_20150728002307-00300-ip-10-236-191-2_425513886_0.json
a5055de5__Gene__UBE2I__ENSG00000103275___Biotype
[Name] UBE2I-002 [Transcript ID] ENST00000355803 [bp] 3253 [Protein] 158aa [Translation ID] ENSP00000348056 [CCDS] CCDS10433 [UniProt] P63279 [RefSeq] NM_194260 NP_919236 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: UBE2I (ENSG00000103275)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000103275;r=16:1308880-1327018
1/1438042987127.36_20150728002307-00243-ip-10-236-191-2_425699152_0.json
a5055de5__Gene__UBE2I__ENSG00000103275___Biotype
[Name] UBE2I-004 [Transcript ID] ENST00000397515 [bp] 3109 [Protein] 158aa [Translation ID] ENSP00000380650 [CCDS] CCDS10433 [UniProt] P63279 [RefSeq] NM_194259 NP_919235 [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: UBE2I (ENSG00000103275)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000103275;r=16:1308880-1327018
1/1438042987127.36_20150728002307-00243-ip-10-236-191-2_425699152_0.json
a5055de5__Gene__UBE2I__ENSG00000103275___Biotype
[Name] UBE2I-001 [Transcript ID] ENST00000397514 [bp] 2976 [Protein] 158aa [Translation ID] ENSP00000380649 [CCDS] CCDS10433 [UniProt] P63279 [RefSeq] NM_003345 NP_003336 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: UBE2I (ENSG00000103275)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000103275;r=16:1308880-1327018
1/1438042987127.36_20150728002307-00243-ip-10-236-191-2_425699152_0.json