python_code
stringlengths 0
992k
| repo_name
stringlengths 8
46
| file_path
stringlengths 5
162
|
|---|---|---|
#! /usr/bin/env python3
# coding=utf-8
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import csv
import json
import math
import time
import numpy as np
import torch
import torch.optim as optim
import torch.utils.data as data
from nltk.tokenize.treebank import TreebankWordDetokenizer
from pplm_classification_head import ClassificationHead
from torch import nn
from torchtext import data as torchtext_data
from torchtext import datasets
from tqdm import tqdm, trange
from transformers import GPT2LMHeadModel, GPT2Tokenizer
torch.manual_seed(0)
np.random.seed(0)
EPSILON = 1e-10
example_sentence = "This is incredible! I love it, this is the best chicken I have ever had."
max_length_seq = 100
class Discriminator(nn.Module):
"""Transformer encoder followed by a Classification Head"""
def __init__(self, class_size, pretrained_model="gpt2-medium", cached_mode=False, device="cpu"):
super().__init__()
self.tokenizer = GPT2Tokenizer.from_pretrained(pretrained_model)
self.encoder = GPT2LMHeadModel.from_pretrained(pretrained_model)
self.embed_size = self.encoder.transformer.config.hidden_size
self.classifier_head = ClassificationHead(class_size=class_size, embed_size=self.embed_size)
self.cached_mode = cached_mode
self.device = device
def get_classifier(self):
return self.classifier_head
def train_custom(self):
for param in self.encoder.parameters():
param.requires_grad = False
self.classifier_head.train()
def avg_representation(self, x):
mask = x.ne(0).unsqueeze(2).repeat(1, 1, self.embed_size).float().to(self.device).detach()
hidden = self.encoder.transformer(x)["last_hidden_state"]
masked_hidden = hidden * mask
avg_hidden = torch.sum(masked_hidden, dim=1) / (torch.sum(mask, dim=1).detach() + EPSILON)
return avg_hidden
def forward(self, x):
if self.cached_mode:
avg_hidden = x.to(self.device)
else:
avg_hidden = self.avg_representation(x.to(self.device))
logits = self.classifier_head(avg_hidden)
probs = nn.functional.log_softmax(logits, dim=-1)
return probs
class Dataset(data.Dataset):
def __init__(self, X, y):
"""Reads source and target sequences from txt files."""
self.X = X
self.y = y
def __len__(self):
return len(self.X)
def __getitem__(self, index):
"""Returns one data pair (source and target)."""
data = {}
data["X"] = self.X[index]
data["y"] = self.y[index]
return data
def collate_fn(data):
def pad_sequences(sequences):
lengths = [len(seq) for seq in sequences]
padded_sequences = torch.zeros(len(sequences), max(lengths)).long() # padding value = 0
for i, seq in enumerate(sequences):
end = lengths[i]
padded_sequences[i, :end] = seq[:end]
return padded_sequences, lengths
item_info = {}
for key in data[0].keys():
item_info[key] = [d[key] for d in data]
x_batch, _ = pad_sequences(item_info["X"])
y_batch = torch.tensor(item_info["y"], dtype=torch.long)
return x_batch, y_batch
def cached_collate_fn(data):
item_info = {}
for key in data[0].keys():
item_info[key] = [d[key] for d in data]
x_batch = torch.cat(item_info["X"], 0)
y_batch = torch.tensor(item_info["y"], dtype=torch.long)
return x_batch, y_batch
def train_epoch(data_loader, discriminator, optimizer, epoch=0, log_interval=10, device="cpu"):
samples_so_far = 0
discriminator.train_custom()
for batch_idx, (input_t, target_t) in enumerate(data_loader):
input_t, target_t = input_t.to(device), target_t.to(device)
optimizer.zero_grad()
output_t = discriminator(input_t)
loss = nn.functional.nll_loss(output_t, target_t)
loss.backward(retain_graph=True)
optimizer.step()
samples_so_far += len(input_t)
if batch_idx % log_interval == 0:
print(
"Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}".format(
epoch + 1,
samples_so_far,
len(data_loader.dataset),
100 * samples_so_far / len(data_loader.dataset),
loss.item(),
)
)
def evaluate_performance(data_loader, discriminator, device="cpu"):
discriminator.eval()
test_loss = 0
correct = 0
with torch.no_grad():
for input_t, target_t in data_loader:
input_t, target_t = input_t.to(device), target_t.to(device)
output_t = discriminator(input_t)
# sum up batch loss
test_loss += nn.functional.nll_loss(output_t, target_t, reduction="sum").item()
# get the index of the max log-probability
pred_t = output_t.argmax(dim=1, keepdim=True)
correct += pred_t.eq(target_t.view_as(pred_t)).sum().item()
test_loss /= len(data_loader.dataset)
print(
"Performance on test set: Average loss: {:.4f}, Accuracy: {}/{} ({:.0f}%)".format(
test_loss, correct, len(data_loader.dataset), 100.0 * correct / len(data_loader.dataset)
)
)
def predict(input_sentence, model, classes, cached=False, device="cpu"):
input_t = model.tokenizer.encode(input_sentence)
input_t = torch.tensor([input_t], dtype=torch.long, device=device)
if cached:
input_t = model.avg_representation(input_t)
log_probs = model(input_t).data.cpu().numpy().flatten().tolist()
print("Input sentence:", input_sentence)
print(
"Predictions:",
", ".join("{}: {:.4f}".format(c, math.exp(log_prob)) for c, log_prob in zip(classes, log_probs)),
)
def get_cached_data_loader(dataset, batch_size, discriminator, shuffle=False, device="cpu"):
data_loader = torch.utils.data.DataLoader(dataset=dataset, batch_size=batch_size, collate_fn=collate_fn)
xs = []
ys = []
for batch_idx, (x, y) in enumerate(tqdm(data_loader, ascii=True)):
with torch.no_grad():
x = x.to(device)
avg_rep = discriminator.avg_representation(x).cpu().detach()
avg_rep_list = torch.unbind(avg_rep.unsqueeze(1))
xs += avg_rep_list
ys += y.cpu().numpy().tolist()
data_loader = torch.utils.data.DataLoader(
dataset=Dataset(xs, ys), batch_size=batch_size, shuffle=shuffle, collate_fn=cached_collate_fn
)
return data_loader
def train_discriminator(
dataset,
dataset_fp=None,
pretrained_model="gpt2-medium",
epochs=10,
batch_size=64,
log_interval=10,
save_model=False,
cached=False,
no_cuda=False,
):
device = "cuda" if torch.cuda.is_available() and not no_cuda else "cpu"
print("Preprocessing {} dataset...".format(dataset))
start = time.time()
if dataset == "SST":
idx2class = ["positive", "negative", "very positive", "very negative", "neutral"]
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
text = torchtext_data.Field()
label = torchtext_data.Field(sequential=False)
train_data, val_data, test_data = datasets.SST.splits(
text,
label,
fine_grained=True,
train_subtrees=True,
)
x = []
y = []
for i in trange(len(train_data), ascii=True):
seq = TreebankWordDetokenizer().detokenize(vars(train_data[i])["text"])
seq = discriminator.tokenizer.encode(seq)
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
x.append(seq)
y.append(class2idx[vars(train_data[i])["label"]])
train_dataset = Dataset(x, y)
test_x = []
test_y = []
for i in trange(len(test_data), ascii=True):
seq = TreebankWordDetokenizer().detokenize(vars(test_data[i])["text"])
seq = discriminator.tokenizer.encode(seq)
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
test_x.append(seq)
test_y.append(class2idx[vars(test_data[i])["label"]])
test_dataset = Dataset(test_x, test_y)
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 2,
}
elif dataset == "clickbait":
idx2class = ["non_clickbait", "clickbait"]
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
with open("datasets/clickbait/clickbait_train_prefix.txt") as f:
data = []
for i, line in enumerate(f):
try:
data.append(eval(line))
except Exception:
print("Error evaluating line {}: {}".format(i, line))
continue
x = []
y = []
with open("datasets/clickbait/clickbait_train_prefix.txt") as f:
for i, line in enumerate(tqdm(f, ascii=True)):
try:
d = eval(line)
seq = discriminator.tokenizer.encode(d["text"])
if len(seq) < max_length_seq:
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
else:
print("Line {} is longer than maximum length {}".format(i, max_length_seq))
continue
x.append(seq)
y.append(d["label"])
except Exception:
print("Error evaluating / tokenizing line {}, skipping it".format(i))
pass
full_dataset = Dataset(x, y)
train_size = int(0.9 * len(full_dataset))
test_size = len(full_dataset) - train_size
train_dataset, test_dataset = torch.utils.data.random_split(full_dataset, [train_size, test_size])
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 1,
}
elif dataset == "toxic":
idx2class = ["non_toxic", "toxic"]
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
x = []
y = []
with open("datasets/toxic/toxic_train.txt") as f:
for i, line in enumerate(tqdm(f, ascii=True)):
try:
d = eval(line)
seq = discriminator.tokenizer.encode(d["text"])
if len(seq) < max_length_seq:
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
else:
print("Line {} is longer than maximum length {}".format(i, max_length_seq))
continue
x.append(seq)
y.append(int(np.sum(d["label"]) > 0))
except Exception:
print("Error evaluating / tokenizing line {}, skipping it".format(i))
pass
full_dataset = Dataset(x, y)
train_size = int(0.9 * len(full_dataset))
test_size = len(full_dataset) - train_size
train_dataset, test_dataset = torch.utils.data.random_split(full_dataset, [train_size, test_size])
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 0,
}
else: # if dataset == "generic":
# This assumes the input dataset is a TSV with the following structure:
# class \t text
if dataset_fp is None:
raise ValueError("When generic dataset is selected, dataset_fp needs to be specified aswell.")
classes = set()
with open(dataset_fp) as f:
csv_reader = csv.reader(f, delimiter="\t")
for row in tqdm(csv_reader, ascii=True):
if row:
classes.add(row[0])
idx2class = sorted(classes)
class2idx = {c: i for i, c in enumerate(idx2class)}
discriminator = Discriminator(
class_size=len(idx2class), pretrained_model=pretrained_model, cached_mode=cached, device=device
).to(device)
x = []
y = []
with open(dataset_fp) as f:
csv_reader = csv.reader(f, delimiter="\t")
for i, row in enumerate(tqdm(csv_reader, ascii=True)):
if row:
label = row[0]
text = row[1]
try:
seq = discriminator.tokenizer.encode(text)
if len(seq) < max_length_seq:
seq = torch.tensor([50256] + seq, device=device, dtype=torch.long)
else:
print("Line {} is longer than maximum length {}".format(i, max_length_seq))
continue
x.append(seq)
y.append(class2idx[label])
except Exception:
print("Error tokenizing line {}, skipping it".format(i))
pass
full_dataset = Dataset(x, y)
train_size = int(0.9 * len(full_dataset))
test_size = len(full_dataset) - train_size
train_dataset, test_dataset = torch.utils.data.random_split(full_dataset, [train_size, test_size])
discriminator_meta = {
"class_size": len(idx2class),
"embed_size": discriminator.embed_size,
"pretrained_model": pretrained_model,
"class_vocab": class2idx,
"default_class": 0,
}
end = time.time()
print("Preprocessed {} data points".format(len(train_dataset) + len(test_dataset)))
print("Data preprocessing took: {:.3f}s".format(end - start))
if cached:
print("Building representation cache...")
start = time.time()
train_loader = get_cached_data_loader(train_dataset, batch_size, discriminator, shuffle=True, device=device)
test_loader = get_cached_data_loader(test_dataset, batch_size, discriminator, device=device)
end = time.time()
print("Building representation cache took: {:.3f}s".format(end - start))
else:
train_loader = torch.utils.data.DataLoader(
dataset=train_dataset, batch_size=batch_size, shuffle=True, collate_fn=collate_fn
)
test_loader = torch.utils.data.DataLoader(dataset=test_dataset, batch_size=batch_size, collate_fn=collate_fn)
if save_model:
with open("{}_classifier_head_meta.json".format(dataset), "w") as meta_file:
json.dump(discriminator_meta, meta_file)
optimizer = optim.Adam(discriminator.parameters(), lr=0.0001)
for epoch in range(epochs):
start = time.time()
print("\nEpoch", epoch + 1)
train_epoch(
discriminator=discriminator,
data_loader=train_loader,
optimizer=optimizer,
epoch=epoch,
log_interval=log_interval,
device=device,
)
evaluate_performance(data_loader=test_loader, discriminator=discriminator, device=device)
end = time.time()
print("Epoch took: {:.3f}s".format(end - start))
print("\nExample prediction")
predict(example_sentence, discriminator, idx2class, cached=cached, device=device)
if save_model:
# torch.save(discriminator.state_dict(),
# "{}_discriminator_{}.pt".format(
# args.dataset, epoch + 1
# ))
torch.save(
discriminator.get_classifier().state_dict(),
"{}_classifier_head_epoch_{}.pt".format(dataset, epoch + 1),
)
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Train a discriminator on top of GPT-2 representations")
parser.add_argument(
"--dataset",
type=str,
default="SST",
choices=("SST", "clickbait", "toxic", "generic"),
help=(
"dataset to train the discriminator on."
"In case of generic, the dataset is expected"
"to be a TSBV file with structure: class \\t text"
),
)
parser.add_argument(
"--dataset_fp",
type=str,
default="",
help="File path of the dataset to use. Needed only in case of generic datadset",
)
parser.add_argument(
"--pretrained_model", type=str, default="gpt2-medium", help="Pretrained model to use as encoder"
)
parser.add_argument("--epochs", type=int, default=10, metavar="N", help="Number of training epochs")
parser.add_argument(
"--batch_size", type=int, default=64, metavar="N", help="input batch size for training (default: 64)"
)
parser.add_argument(
"--log_interval",
type=int,
default=10,
metavar="N",
help="how many batches to wait before logging training status",
)
parser.add_argument("--save_model", action="store_true", help="whether to save the model")
parser.add_argument("--cached", action="store_true", help="whether to cache the input representations")
parser.add_argument("--no_cuda", action="store_true", help="use to turn off cuda")
args = parser.parse_args()
train_discriminator(**(vars(args)))
| transformers-main | examples/research_projects/pplm/run_pplm_discrim_train.py |
from __future__ import absolute_import, division, print_function
import argparse
import glob
import logging
import os
import random
import time
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from src.modeling_highway_bert import DeeBertForSequenceClassification
from src.modeling_highway_roberta import DeeRobertaForSequenceClassification
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertTokenizer,
RobertaConfig,
RobertaTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, DeeBertForSequenceClassification, BertTokenizer),
"roberta": (RobertaConfig, DeeRobertaForSequenceClassification, RobertaTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def get_wanted_result(result):
if "spearmanr" in result:
print_result = result["spearmanr"]
elif "f1" in result:
print_result = result["f1"]
elif "mcc" in result:
print_result = result["mcc"]
elif "acc" in result:
print_result = result["acc"]
else:
raise ValueError("Primary metric unclear in the results")
return print_result
def train(args, train_dataset, model, tokenizer, train_highway=False):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
if train_highway:
optimizer_grouped_parameters = [
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" in n) and (not any(nd in n for nd in no_decay))
],
"weight_decay": args.weight_decay,
},
{
"params": [
p for n, p in model.named_parameters() if ("highway" in n) and (any(nd in n for nd in no_decay))
],
"weight_decay": 0.0,
},
]
else:
optimizer_grouped_parameters = [
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" not in n) and (not any(nd in n for nd in no_decay))
],
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if ("highway" not in n) and (any(nd in n for nd in no_decay))
],
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0])
set_seed(args) # Added here for reproductibility (even between python 2 and 3)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "xlnet"] else None
) # XLM, DistilBERT and RoBERTa don't use segment_ids
inputs["train_highway"] = train_highway
outputs = model(**inputs)
loss = outputs[0] # model outputs are always tuple in transformers (see doc)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Log metrics
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
tb_writer.add_scalar("lr", scheduler.get_lr()[0], global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
logging_loss = tr_loss
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix="", output_layer=-1, eval_highway=False):
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "-MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset) if args.local_rank == -1 else DistributedSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
exit_layer_counter = {(i + 1): 0 for i in range(model.num_layers)}
st = time.time()
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "xlnet"] else None
) # XLM, DistilBERT and RoBERTa don't use segment_ids
if output_layer >= 0:
inputs["output_layer"] = output_layer
outputs = model(**inputs)
if eval_highway:
exit_layer_counter[outputs[-1]] += 1
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_time = time.time() - st
logger.info("Eval time: {}".format(eval_time))
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
if eval_highway:
logger.info("Exit layer counter: {}".format(exit_layer_counter))
actual_cost = sum([l * c for l, c in exit_layer_counter.items()])
full_cost = len(eval_dataloader) * model.num_layers
logger.info("Expected saving: {}".format(actual_cost / full_cost))
if args.early_exit_entropy >= 0:
save_fname = (
args.plot_data_dir
+ "/"
+ args.model_name_or_path[2:]
+ "/entropy_{}.npy".format(args.early_exit_entropy)
)
if not os.path.exists(os.path.dirname(save_fname)):
os.makedirs(os.path.dirname(save_fname))
print_result = get_wanted_result(result)
np.save(save_fname, np.array([exit_layer_counter, eval_time, actual_cost / full_cost, print_result]))
logger.info("Entropy={}\tResult={:.2f}".format(args.early_exit_entropy, 100 * print_result))
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
label_list=label_list,
max_length=args.max_seq_length,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
if features[0].token_type_ids is None:
# For RoBERTa (a potential bug!)
all_token_type_ids = torch.tensor([[0] * args.max_seq_length for f in features], dtype=torch.long)
else:
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pre-trained model or shortcut name.",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--plot_data_dir",
default="./plotting/",
type=str,
required=False,
help="The directory to store data for plotting figures.",
)
# Other parameters
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Rul evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--eval_each_highway", action="store_true", help="Set this flag to evaluate each highway.")
parser.add_argument(
"--eval_after_first_stage",
action="store_true",
help="Set this flag to evaluate after training only bert (not highway).",
)
parser.add_argument("--eval_highway", action="store_true", help="Set this flag if it's evaluating highway models")
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight deay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--early_exit_entropy", default=-1, type=float, help="Entropy threshold for early exit.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--local_rank", type=int, default=-1, help="For distributed training: local_rank")
parser.add_argument("--server_ip", type=str, default="", help="For distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="For distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.model_type == "bert":
model.bert.encoder.set_early_exit_entropy(args.early_exit_entropy)
model.bert.init_highway_pooler()
elif args.model_type == "roberta":
model.roberta.encoder.set_early_exit_entropy(args.early_exit_entropy)
model.roberta.init_highway_pooler()
else:
raise NotImplementedError()
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
if args.eval_after_first_stage:
result = evaluate(args, model, tokenizer, prefix="")
print_result = get_wanted_result(result)
train(args, train_dataset, model, tokenizer, train_highway=True)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
# Create output directory if needed
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
if args.model_type == "bert":
model.bert.encoder.set_early_exit_entropy(args.early_exit_entropy)
elif args.model_type == "roberta":
model.roberta.encoder.set_early_exit_entropy(args.early_exit_entropy)
else:
raise NotImplementedError()
model.to(args.device)
result = evaluate(args, model, tokenizer, prefix=prefix, eval_highway=args.eval_highway)
print_result = get_wanted_result(result)
logger.info("Result: {}".format(print_result))
if args.eval_each_highway:
last_layer_results = print_result
each_layer_results = []
for i in range(model.num_layers):
logger.info("\n")
_result = evaluate(
args, model, tokenizer, prefix=prefix, output_layer=i, eval_highway=args.eval_highway
)
if i + 1 < model.num_layers:
each_layer_results.append(get_wanted_result(_result))
each_layer_results.append(last_layer_results)
save_fname = args.plot_data_dir + "/" + args.model_name_or_path[2:] + "/each_layer.npy"
if not os.path.exists(os.path.dirname(save_fname)):
os.makedirs(os.path.dirname(save_fname))
np.save(save_fname, np.array(each_layer_results))
info_str = "Score of each layer:"
for i in range(model.num_layers):
info_str += " {:.2f}".format(100 * each_layer_results[i])
logger.info(info_str)
result = {k + "_{}".format(global_step): v for k, v in result.items()}
results.update(result)
return results
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/deebert/run_glue_deebert.py |
import argparse
import logging
import sys
from unittest.mock import patch
import run_glue_deebert
from transformers.testing_utils import TestCasePlus, get_gpu_count, require_torch_non_multi_gpu, slow
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse.ArgumentParser()
parser.add_argument("-f")
args = parser.parse_args()
return args.f
class DeeBertTests(TestCasePlus):
def setup(self) -> None:
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
def run_and_check(self, args):
n_gpu = get_gpu_count()
if n_gpu > 1:
pass
# XXX: doesn't quite work with n_gpu > 1 https://github.com/huggingface/transformers/issues/10560
# script = f"{self.examples_dir_str}/research_projects/deebert/run_glue_deebert.py"
# distributed_args = f"-m torch.distributed.launch --nproc_per_node={n_gpu} {script}".split()
# cmd = [sys.executable] + distributed_args + args
# execute_subprocess_async(cmd, env=self.get_env())
# XXX: test the results - need to save them first into .json file
else:
args.insert(0, "run_glue_deebert.py")
with patch.object(sys, "argv", args):
result = run_glue_deebert.main()
for value in result.values():
self.assertGreaterEqual(value, 0.666)
@slow
@require_torch_non_multi_gpu
def test_glue_deebert_train(self):
train_args = """
--model_type roberta
--model_name_or_path roberta-base
--task_name MRPC
--do_train
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--max_seq_length 128
--per_gpu_eval_batch_size=1
--per_gpu_train_batch_size=8
--learning_rate 2e-4
--num_train_epochs 3
--overwrite_output_dir
--seed 42
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--save_steps 0
--overwrite_cache
--eval_after_first_stage
""".split()
self.run_and_check(train_args)
eval_args = """
--model_type roberta
--model_name_or_path ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--task_name MRPC
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--max_seq_length 128
--eval_each_highway
--eval_highway
--overwrite_cache
--per_gpu_eval_batch_size=1
""".split()
self.run_and_check(eval_args)
entropy_eval_args = """
--model_type roberta
--model_name_or_path ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--task_name MRPC
--do_eval
--do_lower_case
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir ./examples/deebert/saved_models/roberta-base/MRPC/two_stage
--plot_data_dir ./examples/deebert/results/
--max_seq_length 128
--early_exit_entropy 0.1
--eval_highway
--overwrite_cache
--per_gpu_eval_batch_size=1
""".split()
self.run_and_check(entropy_eval_args)
| transformers-main | examples/research_projects/deebert/test_glue_deebert.py |
from __future__ import absolute_import, division, print_function, unicode_literals
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers import RobertaConfig
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.roberta.modeling_roberta import (
ROBERTA_INPUTS_DOCSTRING,
ROBERTA_START_DOCSTRING,
RobertaEmbeddings,
)
from .modeling_highway_bert import BertPreTrainedModel, DeeBertModel, HighwayException, entropy
@add_start_docstrings(
"The RoBERTa Model transformer with early exiting (DeeRoBERTa). ",
ROBERTA_START_DOCSTRING,
)
class DeeRobertaModel(DeeBertModel):
config_class = RobertaConfig
base_model_prefix = "roberta"
def __init__(self, config):
super().__init__(config)
self.embeddings = RobertaEmbeddings(config)
self.init_weights()
@add_start_docstrings(
"""RoBERTa Model (with early exiting - DeeRoBERTa) with a classifier on top,
also takes care of multi-layer training. """,
ROBERTA_START_DOCSTRING,
)
class DeeRobertaForSequenceClassification(BertPreTrainedModel):
config_class = RobertaConfig
base_model_prefix = "roberta"
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.num_layers = config.num_hidden_layers
self.roberta = DeeRobertaModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
@add_start_docstrings_to_model_forward(ROBERTA_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_layer=-1,
train_highway=False,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.RobertaConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
exit_layer = self.num_layers
try:
outputs = self.roberta(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
except HighwayException as e:
outputs = e.message
exit_layer = e.exit_layer
logits = outputs[0]
if not self.training:
original_entropy = entropy(logits)
highway_entropy = []
highway_logits_all = []
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
# work with highway exits
highway_losses = []
for highway_exit in outputs[-1]:
highway_logits = highway_exit[0]
if not self.training:
highway_logits_all.append(highway_logits)
highway_entropy.append(highway_exit[2])
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
highway_loss = loss_fct(highway_logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
highway_loss = loss_fct(highway_logits.view(-1, self.num_labels), labels.view(-1))
highway_losses.append(highway_loss)
if train_highway:
outputs = (sum(highway_losses[:-1]),) + outputs
# exclude the final highway, of course
else:
outputs = (loss,) + outputs
if not self.training:
outputs = outputs + ((original_entropy, highway_entropy), exit_layer)
if output_layer >= 0:
outputs = (
(outputs[0],) + (highway_logits_all[output_layer],) + outputs[2:]
) # use the highway of the last layer
return outputs # (loss), logits, (hidden_states), (attentions), entropy
| transformers-main | examples/research_projects/deebert/src/modeling_highway_roberta.py |
transformers-main | examples/research_projects/deebert/src/__init__.py |
|
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.bert.modeling_bert import (
BERT_INPUTS_DOCSTRING,
BERT_START_DOCSTRING,
BertEmbeddings,
BertLayer,
BertPooler,
BertPreTrainedModel,
)
def entropy(x):
"""Calculate entropy of a pre-softmax logit Tensor"""
exp_x = torch.exp(x)
A = torch.sum(exp_x, dim=1) # sum of exp(x_i)
B = torch.sum(x * exp_x, dim=1) # sum of x_i * exp(x_i)
return torch.log(A) - B / A
class DeeBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.layer = nn.ModuleList([BertLayer(config) for _ in range(config.num_hidden_layers)])
self.highway = nn.ModuleList([BertHighway(config) for _ in range(config.num_hidden_layers)])
self.early_exit_entropy = [-1 for _ in range(config.num_hidden_layers)]
def set_early_exit_entropy(self, x):
if (type(x) is float) or (type(x) is int):
for i in range(len(self.early_exit_entropy)):
self.early_exit_entropy[i] = x
else:
self.early_exit_entropy = x
def init_highway_pooler(self, pooler):
loaded_model = pooler.state_dict()
for highway in self.highway:
for name, param in highway.pooler.state_dict().items():
param.copy_(loaded_model[name])
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
):
all_hidden_states = ()
all_attentions = ()
all_highway_exits = ()
for i, layer_module in enumerate(self.layer):
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states, attention_mask, head_mask[i], encoder_hidden_states, encoder_attention_mask
)
hidden_states = layer_outputs[0]
if self.output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
current_outputs = (hidden_states,)
if self.output_hidden_states:
current_outputs = current_outputs + (all_hidden_states,)
if self.output_attentions:
current_outputs = current_outputs + (all_attentions,)
highway_exit = self.highway[i](current_outputs)
# logits, pooled_output
if not self.training:
highway_logits = highway_exit[0]
highway_entropy = entropy(highway_logits)
highway_exit = highway_exit + (highway_entropy,) # logits, hidden_states(?), entropy
all_highway_exits = all_highway_exits + (highway_exit,)
if highway_entropy < self.early_exit_entropy[i]:
new_output = (highway_logits,) + current_outputs[1:] + (all_highway_exits,)
raise HighwayException(new_output, i + 1)
else:
all_highway_exits = all_highway_exits + (highway_exit,)
# Add last layer
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = (hidden_states,)
if self.output_hidden_states:
outputs = outputs + (all_hidden_states,)
if self.output_attentions:
outputs = outputs + (all_attentions,)
outputs = outputs + (all_highway_exits,)
return outputs # last-layer hidden state, (all hidden states), (all attentions), all highway exits
@add_start_docstrings(
"The Bert Model transformer with early exiting (DeeBERT). ",
BERT_START_DOCSTRING,
)
class DeeBertModel(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = BertEmbeddings(config)
self.encoder = DeeBertEncoder(config)
self.pooler = BertPooler(config)
self.init_weights()
def init_highway_pooler(self):
self.encoder.init_highway_pooler(self.pooler)
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""Prunes heads of the model.
heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
See base class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if encoder_attention_mask.dim() == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
if encoder_attention_mask.dim() == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
encoder_extended_attention_mask = encoder_extended_attention_mask.to(
dtype=next(self.parameters()).dtype
) # fp16 compatibility
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output)
outputs = (
sequence_output,
pooled_output,
) + encoder_outputs[
1:
] # add hidden_states and attentions if they are here
return outputs # sequence_output, pooled_output, (hidden_states), (attentions), highway exits
class HighwayException(Exception):
def __init__(self, message, exit_layer):
self.message = message
self.exit_layer = exit_layer # start from 1!
class BertHighway(nn.Module):
"""A module to provide a shortcut
from (the output of one non-final BertLayer in BertEncoder) to (cross-entropy computation in BertForSequenceClassification)
"""
def __init__(self, config):
super().__init__()
self.pooler = BertPooler(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, encoder_outputs):
# Pooler
pooler_input = encoder_outputs[0]
pooler_output = self.pooler(pooler_input)
# "return" pooler_output
# BertModel
bmodel_output = (pooler_input, pooler_output) + encoder_outputs[1:]
# "return" bmodel_output
# Dropout and classification
pooled_output = bmodel_output[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
return logits, pooled_output
@add_start_docstrings(
"""Bert Model (with early exiting - DeeBERT) with a classifier on top,
also takes care of multi-layer training. """,
BERT_START_DOCSTRING,
)
class DeeBertForSequenceClassification(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.num_layers = config.num_hidden_layers
self.bert = DeeBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_layer=-1,
train_highway=False,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
highway_exits (:obj:`tuple(tuple(torch.Tensor))`:
Tuple of each early exit's results (total length: number of layers)
Each tuple is again, a tuple of length 2 - the first entry is logits and the second entry is hidden states.
"""
exit_layer = self.num_layers
try:
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
)
# sequence_output, pooled_output, (hidden_states), (attentions), highway exits
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
except HighwayException as e:
outputs = e.message
exit_layer = e.exit_layer
logits = outputs[0]
if not self.training:
original_entropy = entropy(logits)
highway_entropy = []
highway_logits_all = []
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
# work with highway exits
highway_losses = []
for highway_exit in outputs[-1]:
highway_logits = highway_exit[0]
if not self.training:
highway_logits_all.append(highway_logits)
highway_entropy.append(highway_exit[2])
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
highway_loss = loss_fct(highway_logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
highway_loss = loss_fct(highway_logits.view(-1, self.num_labels), labels.view(-1))
highway_losses.append(highway_loss)
if train_highway:
outputs = (sum(highway_losses[:-1]),) + outputs
# exclude the final highway, of course
else:
outputs = (loss,) + outputs
if not self.training:
outputs = outputs + ((original_entropy, highway_entropy), exit_layer)
if output_layer >= 0:
outputs = (
(outputs[0],) + (highway_logits_all[output_layer],) + outputs[2:]
) # use the highway of the last layer
return outputs # (loss), logits, (hidden_states), (attentions), (highway_exits)
| transformers-main | examples/research_projects/deebert/src/modeling_highway_bert.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The Microsoft and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for tapex on table-based question answering tasks.
Adapted from script: https://github.com/huggingface/transformers/blob/master/examples/pytorch/summarization/run_summarization.py
"""
import logging
import os
import sys
from collections import defaultdict
from dataclasses import dataclass, field
from functools import partial
from typing import List, Optional
import nltk # Here to have a nice missing dependency error message early on
import numpy as np
import pandas as pd
from datasets import load_dataset
from filelock import FileLock
import transformers
from transformers import (
AutoConfig,
BartForConditionalGeneration,
DataCollatorForSeq2Seq,
HfArgumentParser,
Seq2SeqTrainer,
Seq2SeqTrainingArguments,
TapexTokenizer,
set_seed,
)
from transformers.file_utils import is_offline_mode
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.17.0.dev0")
logger = logging.getLogger(__name__)
try:
nltk.data.find("tokenizers/punkt")
except (LookupError, OSError):
if is_offline_mode():
raise LookupError(
"Offline mode: run this script without TRANSFORMERS_OFFLINE first to download nltk data files"
)
with FileLock(".lock") as lock:
nltk.download("punkt", quiet=True)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None,
metadata={
"help": (
"Pretrained tokenizer name or path if not the same as model_name. "
"By default we use BART-large tokenizer for TAPEX-large."
)
},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where to store the pretrained models downloaded from huggingface.co"},
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default="wikitablequestions", metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a jsonlines or csv file)."}
)
validation_file: Optional[str] = field(
default=None,
metadata={
"help": (
"An optional input evaluation data file to evaluate the metrics (rouge) on (a jsonlines or csv file)."
)
},
)
test_file: Optional[str] = field(
default=None,
metadata={
"help": "An optional input test data file to evaluate the metrics (rouge) on (a jsonlines or csv file)."
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_source_length: Optional[int] = field(
default=1024,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_target_length: Optional[int] = field(
default=128,
metadata={
"help": (
"The maximum total sequence length for target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
val_max_target_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total sequence length for validation target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded. Will default to `max_target_length`."
"This argument is also used to override the ``max_length`` param of ``model.generate``, which is used "
"during ``evaluate`` and ``predict``."
)
},
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to model maximum sentence length. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch. More "
"efficient on GPU but very bad for TPU."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
num_beams: Optional[int] = field(
default=None,
metadata={
"help": (
"Number of beams to use for evaluation. This argument will be passed to ``model.generate``, "
"which is used during ``evaluate`` and ``predict``."
)
},
)
ignore_pad_token_for_loss: bool = field(
default=True,
metadata={
"help": "Whether to ignore the tokens corresponding to padded labels in the loss computation or not."
},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if self.val_max_target_length is None:
self.val_max_target_length = self.max_target_length
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, Seq2SeqTrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For JSON files, this script will use the `question` column for the input question and `table` column for the corresponding table.
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
extension = data_args.train_file.split(".")[-1]
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.validation_file.split(".")[-1]
if data_args.test_file is not None:
data_files["test"] = data_args.test_file
extension = data_args.test_file.split(".")[-1]
datasets = load_dataset(extension, data_files=data_files, cache_dir=model_args.cache_dir)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
)
# IMPORTANT: the initial BART model's decoding is penalized by no_repeat_ngram_size, and thus
# we should disable it here to avoid problematic generation
config.no_repeat_ngram_size = 0
config.max_length = 1024
config.early_stopping = False
# load tapex tokenizer
tokenizer = TapexTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
add_prefix_space=True,
)
# load Bart based Tapex model (default tapex-large)
model = BartForConditionalGeneration.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
)
if model.config.decoder_start_token_id is None:
raise ValueError("Make sure that `config.decoder_start_token_id` is correctly defined")
# Preprocessing the datasets.
# We need to tokenize inputs and targets.
if training_args.do_train:
column_names = datasets["train"].column_names
elif training_args.do_eval:
column_names = datasets["validation"].column_names
elif training_args.do_predict:
column_names = datasets["test"].column_names
else:
logger.info("There is nothing to do. Please pass `do_train`, `do_eval` and/or `do_predict`.")
return
# Temporarily set max_target_length for training.
max_target_length = data_args.max_target_length
padding = "max_length" if data_args.pad_to_max_length else False
if training_args.label_smoothing_factor > 0 and not hasattr(model, "prepare_decoder_input_ids_from_labels"):
logger.warning(
"label_smoothing is enabled but the `prepare_decoder_input_ids_from_labels` method is not defined for"
f"`{model.__class__.__name__}`. This will lead to loss being calculated twice and will take up more memory"
)
def preprocess_tableqa_function(examples, is_training=False):
"""
The is_training FLAG is used to identify if we could use the supervision
to truncate the table content if it is required.
"""
questions = [question.lower() for question in examples["question"]]
example_tables = examples["table"]
tables = [
pd.DataFrame.from_records(example_table["rows"], columns=example_table["header"])
for example_table in example_tables
]
# using wikitablequestion's answer set
answers = examples["answers"]
# IMPORTANT: we cannot pass by answers during evaluation, answers passed during training are used to
# truncate large tables in the train set!
if is_training:
model_inputs = tokenizer(
table=tables,
query=questions,
answer=answers,
max_length=data_args.max_source_length,
padding=padding,
truncation=True,
)
else:
model_inputs = tokenizer(
table=tables, query=questions, max_length=data_args.max_source_length, padding=padding, truncation=True
)
labels = tokenizer(
answer=[", ".join(answer) for answer in answers],
max_length=max_target_length,
padding=padding,
truncation=True,
)
# If we are padding here, replace all tokenizer.pad_token_id in the labels by -100 when we want to ignore
# padding in the loss.
if padding == "max_length" and data_args.ignore_pad_token_for_loss:
labels["input_ids"] = [
[(l if l != tokenizer.pad_token_id else -100) for l in label] for label in labels["input_ids"]
]
model_inputs["labels"] = labels["input_ids"]
return model_inputs
# in training, we can use the answer as extra information to truncate large tables
preprocess_tableqa_function_training = partial(preprocess_tableqa_function, is_training=True)
if training_args.do_train:
if "train" not in datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = datasets["train"]
if data_args.max_train_samples is not None:
train_dataset = train_dataset.select(range(data_args.max_train_samples))
train_dataset = train_dataset.map(
preprocess_tableqa_function_training,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_eval:
max_target_length = data_args.val_max_target_length
if "validation" not in datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = datasets["validation"]
if data_args.max_eval_samples is not None:
eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
eval_dataset = eval_dataset.map(
preprocess_tableqa_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_predict:
max_target_length = data_args.val_max_target_length
if "test" not in datasets:
raise ValueError("--do_predict requires a test dataset")
predict_dataset = datasets["test"]
if data_args.max_predict_samples is not None:
predict_dataset = predict_dataset.select(range(data_args.max_predict_samples))
predict_dataset = predict_dataset.map(
preprocess_tableqa_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# Data collator
label_pad_token_id = -100 if data_args.ignore_pad_token_for_loss else tokenizer.pad_token_id
data_collator = DataCollatorForSeq2Seq(
tokenizer,
model=model,
label_pad_token_id=label_pad_token_id,
pad_to_multiple_of=8 if training_args.fp16 else None,
)
def postprocess_text(preds, labels):
preds = [pred.strip() for pred in preds]
labels = [label.strip() for label in labels]
return preds, labels
def compute_metrics(eval_preds):
preds, labels = eval_preds
if isinstance(preds, tuple):
preds = preds[0]
decoded_preds = tokenizer.batch_decode(preds, skip_special_tokens=True)
if data_args.ignore_pad_token_for_loss:
# Replace -100 in the labels as we can't decode them.
labels = np.where(labels != -100, labels, tokenizer.pad_token_id)
decoded_labels = tokenizer.batch_decode(labels, skip_special_tokens=True)
# Some simple post-processing
decoded_preds, decoded_labels = postprocess_text(decoded_preds, decoded_labels)
delimiter = ", "
# define example evaluation
def evaluate_example(predict_str: str, ground_str: str):
predict_spans = predict_str.split(delimiter)
ground_spans = ground_str.split(delimiter)
predict_values = defaultdict(lambda: 0)
ground_values = defaultdict(lambda: 0)
for span in predict_spans:
try:
predict_values[float(span)] += 1
except ValueError:
predict_values[span.strip()] += 1
for span in ground_spans:
try:
ground_values[float(span)] += 1
except ValueError:
ground_values[span.strip()] += 1
_is_correct = predict_values == ground_values
return _is_correct
def get_denotation_accuracy(predictions: List[str], references: List[str]):
assert len(predictions) == len(references)
correct_num = 0
for predict_str, ground_str in zip(predictions, references):
is_correct = evaluate_example(predict_str.lower(), ground_str.lower())
if is_correct:
correct_num += 1
return correct_num / len(predictions)
accuracy = get_denotation_accuracy(decoded_preds, decoded_labels)
result = {"denotation_accuracy": accuracy}
return result
# Initialize our Trainer
trainer = Seq2SeqTrainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train else None,
eval_dataset=eval_dataset if training_args.do_eval else None,
tokenizer=tokenizer,
data_collator=data_collator,
compute_metrics=compute_metrics if training_args.predict_with_generate else None,
)
if training_args.do_train:
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
elif last_checkpoint is not None:
checkpoint = last_checkpoint
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model() # Saves the tokenizer too for easy upload
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
)
metrics["train_samples"] = min(max_train_samples, len(train_dataset))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate(
max_length=data_args.val_max_target_length, num_beams=data_args.num_beams, metric_key_prefix="eval"
)
max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
if training_args.do_predict:
logger.info("*** Predict ***")
predict_results = trainer.predict(
predict_dataset,
metric_key_prefix="predict",
max_length=data_args.val_max_target_length,
num_beams=data_args.num_beams,
)
metrics = predict_results.metrics
max_predict_samples = (
data_args.max_predict_samples if data_args.max_predict_samples is not None else len(predict_dataset)
)
metrics["predict_samples"] = min(max_predict_samples, len(predict_dataset))
trainer.log_metrics("predict", metrics)
trainer.save_metrics("predict", metrics)
if trainer.is_world_process_zero():
if training_args.predict_with_generate:
predictions = tokenizer.batch_decode(
predict_results.predictions, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
predictions = [pred.strip() for pred in predictions]
output_prediction_file = os.path.join(training_args.output_dir, "tapex_predictions.txt")
with open(output_prediction_file, "w") as writer:
writer.write("\n".join(predictions))
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/tapex/run_wikitablequestions_with_tapex.py |
# coding=utf-8
# Copyright 2022 The Microsoft, The Google and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import dataclasses
import enum
import functools
import math
import re
# The following script is adapted from the script of TaPas.
# Original: https://github.com/google-research/tapas/master/wikisql_utils.py
from typing import Any, List, Text
EMPTY_ANSWER = "none"
EMPTY_ANSWER_AGG = "none"
def _split_thousands(delimiter, value):
split = value.split(delimiter)
return len(split) > 1 and any((len(x) == 3 for x in split))
def convert_to_float(value):
"""Converts value to a float using a series of increasingly complex heuristics.
Args:
value: object that needs to be converted. Allowed types include
float/int/strings.
Returns:
A float interpretation of value.
Raises:
ValueError if the float conversion of value fails.
"""
if isinstance(value, float):
return value
if isinstance(value, int):
return float(value)
if not isinstance(value, str):
raise ValueError("Argument value is not a string. Can't parse it as float")
sanitized = value
try:
# Example: 1,000.7
if "." in sanitized and "," in sanitized:
return float(sanitized.replace(",", ""))
# 1,000
if "," in sanitized and _split_thousands(",", sanitized):
return float(sanitized.replace(",", ""))
# 5,5556
if "," in sanitized and sanitized.count(",") == 1 and not _split_thousands(",", sanitized):
return float(sanitized.replace(",", "."))
# 0.0.0.1
if sanitized.count(".") > 1:
return float(sanitized.replace(".", ""))
# 0,0,0,1
if sanitized.count(",") > 1:
return float(sanitized.replace(",", ""))
return float(sanitized)
except ValueError:
# Avoid adding the sanitized value in the error message.
raise ValueError("Unable to convert value to float")
def _normalize_float(answer):
if answer is None:
return None
try:
value = convert_to_float(answer)
if isinstance(value, float) and math.isnan(value):
return None
return value
except ValueError:
return answer.lower()
_TYPE_CONVERTER = {
"text": lambda x: x,
"real": convert_to_float,
}
class _Aggregation(enum.Enum):
"""Aggregations as defined by WikiSQL. Indexes match the data."""
NONE = 0
MAX = 1
MIN = 2
COUNT = 3
SUM = 4
AVERAGE = 5
class _Operator(enum.Enum):
"""The boolean operators used by WikiSQL. Indexes match the data."""
EQUALS = 0
GREATER = 1
LESSER = 2
@dataclasses.dataclass
class _Condition:
"""Represents an SQL where clauses (e.g A = "a" or B > 5)."""
column: Text
operator: _Operator
cmp_value: Any
_TOKENIZER = re.compile(r"\w+|[^\w\s]+", re.UNICODE | re.MULTILINE | re.DOTALL)
def _normalize_for_match(x):
return list(_TOKENIZER.findall(x.lower()))
def _compare(operator, src, tgt):
if operator == _Operator.EQUALS:
return src == tgt
elif operator == _Operator.GREATER:
return src > tgt
elif operator == _Operator.LESSER:
return src < tgt
raise ValueError(f"Unknown operator: {operator}")
def _parse_value(table, column, cell_value):
"""Convert numeric values to floats and keeps everything else as string."""
types = table["types"]
return _TYPE_CONVERTER[types[column]](cell_value)
def _is_string(x):
return isinstance(x, str)
def _respect_conditions(table, row, conditions):
"""True if 'row' satisfies all 'conditions'."""
for cond in conditions:
table_value = row[cond.column]
cmp_value = _parse_value(table, cond.column, cond.cmp_value)
if _is_string(table_value) and _is_string(cmp_value):
table_value = _normalize_for_match(table_value)
cmp_value = _normalize_for_match(cmp_value)
if not isinstance(table_value, type(cmp_value)):
raise ValueError("Type difference {} != {}".format(type(table_value), type(cmp_value)))
if not _compare(cond.operator, table_value, cmp_value):
return False
return True
def _get_float_answer(table, answer_coordinates, aggregation_op):
"""Applies operation to produce reference float answer."""
if not answer_coordinates:
if aggregation_op == _Aggregation.COUNT:
return 0.0
else:
return EMPTY_ANSWER_AGG
# Count can support non numeric answers.
if aggregation_op == _Aggregation.COUNT:
return float(len(answer_coordinates))
# If we have just one answer, if float returns it or try a conversion.
values = [table["rows"][i][j] for (i, j) in answer_coordinates]
if len(answer_coordinates) == 1:
try:
return convert_to_float(values[0])
except ValueError as e:
if aggregation_op != _Aggregation.NONE:
raise e
if aggregation_op == _Aggregation.NONE:
return None
# Other aggregation only support numeric values. Bail out if we have strings.
if not all((isinstance(v, (int, float)) for v in values)):
return None
if aggregation_op == _Aggregation.SUM:
return float(sum(values))
elif aggregation_op == _Aggregation.AVERAGE:
return sum(values) / len(answer_coordinates)
else:
raise ValueError(f"Unknown aggregation: {aggregation_op}")
def _get_answer_coordinates(table, sql_query):
"""Retrieves references coordinates by executing SQL."""
# MAX and MIN are automatically supported by the model.
aggregation_op_index = sql_query["agg"]
if aggregation_op_index >= 3:
aggregation_op = _Aggregation(aggregation_op_index)
else:
aggregation_op = _Aggregation.NONE
target_column = sql_query["sel"]
conditions = [
_Condition(column, _Operator(operator), cmp_value)
for column, operator, cmp_value in zip(
sql_query["conds"]["column_index"], sql_query["conds"]["operator_index"], sql_query["conds"]["condition"]
)
]
indices = []
for row in range(len(table["rows"])):
if _respect_conditions(table, table["rows"][row], conditions):
indices.append((row, target_column))
if not indices:
return [], aggregation_op
if len(indices) == 1:
return indices, aggregation_op
# Parsing of MIN/MAX.
if aggregation_op_index in (1, 2):
operators = {2: min, 1: max}
values = [(table["rows"][i][j], index) for index, (i, j) in enumerate(indices)]
reduced = functools.reduce(operators[sql_query["agg"]], values)
ret = [indices[reduced[1]]]
return ret, _Aggregation.NONE
return indices, aggregation_op
def _get_answer_text(table, answer_coordinates, float_answer):
if float_answer is not None:
return [str(float_answer)]
return [str(table["real_rows"][r][c]) for r, c in answer_coordinates]
def retrieve_wikisql_query_answer_tapas(table, example) -> List:
answer_coordinates, aggregation_op = _get_answer_coordinates(table, example)
float_answer = _get_float_answer(table, answer_coordinates, aggregation_op)
answer_text = _get_answer_text(table, answer_coordinates, float_answer)
# keep the original data the same with TaPas
if len(answer_text) == 0:
answer_text = [EMPTY_ANSWER]
return answer_text
| transformers-main | examples/research_projects/tapex/wikisql_utils.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The Microsoft and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for tapex on table-based question answering tasks.
Adapted from script: https://github.com/huggingface/transformers/blob/master/examples/pytorch/summarization/run_summarization.py
"""
import logging
import os
import sys
from collections import defaultdict
from copy import deepcopy
from dataclasses import dataclass, field
from functools import partial
from typing import List, Optional
import nltk # Here to have a nice missing dependency error message early on
import numpy as np
import pandas as pd
from datasets import load_dataset
from filelock import FileLock
from wikisql_utils import _TYPE_CONVERTER, retrieve_wikisql_query_answer_tapas
import transformers
from transformers import (
AutoConfig,
BartForConditionalGeneration,
DataCollatorForSeq2Seq,
HfArgumentParser,
Seq2SeqTrainer,
Seq2SeqTrainingArguments,
TapexTokenizer,
set_seed,
)
from transformers.file_utils import is_offline_mode
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.17.0.dev0")
logger = logging.getLogger(__name__)
try:
nltk.data.find("tokenizers/punkt")
except (LookupError, OSError):
if is_offline_mode():
raise LookupError(
"Offline mode: run this script without TRANSFORMERS_OFFLINE first to download nltk data files"
)
with FileLock(".lock") as lock:
nltk.download("punkt", quiet=True)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None,
metadata={
"help": (
"Pretrained tokenizer name or path if not the same as model_name. "
"By default we use BART-large tokenizer for TAPEX-large."
)
},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where to store the pretrained models downloaded from huggingface.co"},
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default="wikisql", metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a jsonlines or csv file)."}
)
validation_file: Optional[str] = field(
default=None,
metadata={
"help": (
"An optional input evaluation data file to evaluate the metrics (rouge) on (a jsonlines or csv file)."
)
},
)
test_file: Optional[str] = field(
default=None,
metadata={
"help": "An optional input test data file to evaluate the metrics (rouge) on (a jsonlines or csv file)."
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_source_length: Optional[int] = field(
default=1024,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_target_length: Optional[int] = field(
default=128,
metadata={
"help": (
"The maximum total sequence length for target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
val_max_target_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total sequence length for validation target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded. Will default to `max_target_length`."
"This argument is also used to override the ``max_length`` param of ``model.generate``, which is used "
"during ``evaluate`` and ``predict``."
)
},
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to model maximum sentence length. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch. More "
"efficient on GPU but very bad for TPU."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
num_beams: Optional[int] = field(
default=None,
metadata={
"help": (
"Number of beams to use for evaluation. This argument will be passed to ``model.generate``, "
"which is used during ``evaluate`` and ``predict``."
)
},
)
ignore_pad_token_for_loss: bool = field(
default=True,
metadata={
"help": "Whether to ignore the tokens corresponding to padded labels in the loss computation or not."
},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if self.val_max_target_length is None:
self.val_max_target_length = self.max_target_length
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, Seq2SeqTrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For JSON files, this script will use the `question` column for the input question and `table` column for the corresponding table.
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
extension = data_args.train_file.split(".")[-1]
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.validation_file.split(".")[-1]
if data_args.test_file is not None:
data_files["test"] = data_args.test_file
extension = data_args.test_file.split(".")[-1]
datasets = load_dataset(extension, data_files=data_files, cache_dir=model_args.cache_dir)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
)
# IMPORTANT: the initial BART model's decoding is penalized by no_repeat_ngram_size, and thus
# we should disable it here to avoid problematic generation
config.no_repeat_ngram_size = 0
config.max_length = 1024
config.early_stopping = False
# load tapex tokenizer
tokenizer = TapexTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
add_prefix_space=True,
)
# load Bart based Tapex model (default tapex-large)
model = BartForConditionalGeneration.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
)
if model.config.decoder_start_token_id is None:
raise ValueError("Make sure that `config.decoder_start_token_id` is correctly defined")
# Preprocessing the datasets.
# We need to tokenize inputs and targets.
if training_args.do_train:
column_names = datasets["train"].column_names
elif training_args.do_eval:
column_names = datasets["validation"].column_names
elif training_args.do_predict:
column_names = datasets["test"].column_names
else:
logger.info("There is nothing to do. Please pass `do_train`, `do_eval` and/or `do_predict`.")
return
# Temporarily set max_target_length for training.
max_target_length = data_args.max_target_length
padding = "max_length" if data_args.pad_to_max_length else False
if training_args.label_smoothing_factor > 0 and not hasattr(model, "prepare_decoder_input_ids_from_labels"):
logger.warning(
"label_smoothing is enabled but the `prepare_decoder_input_ids_from_labels` method is not defined for"
f"`{model.__class__.__name__}`. This will lead to loss being calculated twice and will take up more memory"
)
def preprocess_tableqa_function(examples, is_training=False):
"""
The is_training FLAG is used to identify if we could use the supervision
to truncate the table content if it is required.
"""
# this function is specific for WikiSQL since the util function need the data structure
# to retrieve the WikiSQL answer for each question
def _convert_table_types(_table):
"""Runs the type converter over the table cells."""
ret_table = deepcopy(_table)
types = ret_table["types"]
ret_table["real_rows"] = ret_table["rows"]
typed_rows = []
for row in ret_table["rows"]:
typed_row = []
for column, cell_value in enumerate(row):
typed_row.append(_TYPE_CONVERTER[types[column]](cell_value))
typed_rows.append(typed_row)
ret_table["rows"] = typed_rows
return ret_table
questions = [question.lower() for question in examples["question"]]
example_tables = examples["table"]
example_sqls = examples["sql"]
tables = [
pd.DataFrame.from_records(example_table["rows"], columns=example_table["header"])
for example_table in example_tables
]
# using tapas utils to obtain wikisql answer
answers = []
for example_sql, example_table in zip(example_sqls, example_tables):
tapas_table = _convert_table_types(example_table)
answer_list: List[str] = retrieve_wikisql_query_answer_tapas(tapas_table, example_sql)
# you can choose other delimiters to split each answer
answers.append(answer_list)
# IMPORTANT: we cannot pass by answers during evaluation, answers passed during training are used to
# truncate large tables in the train set!
if is_training:
model_inputs = tokenizer(
table=tables,
query=questions,
answer=answers,
max_length=data_args.max_source_length,
padding=padding,
truncation=True,
)
else:
model_inputs = tokenizer(
table=tables, query=questions, max_length=data_args.max_source_length, padding=padding, truncation=True
)
labels = tokenizer(
answer=[", ".join(answer) for answer in answers],
max_length=max_target_length,
padding=padding,
truncation=True,
)
# If we are padding here, replace all tokenizer.pad_token_id in the labels by -100 when we want to ignore
# padding in the loss.
if padding == "max_length" and data_args.ignore_pad_token_for_loss:
labels["input_ids"] = [
[(l if l != tokenizer.pad_token_id else -100) for l in label] for label in labels["input_ids"]
]
model_inputs["labels"] = labels["input_ids"]
return model_inputs
# in training, we can use the answer as extra information to truncate large tables
preprocess_tableqa_function_training = partial(preprocess_tableqa_function, is_training=True)
if training_args.do_train:
if "train" not in datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = datasets["train"]
if data_args.max_train_samples is not None:
train_dataset = train_dataset.select(range(data_args.max_train_samples))
train_dataset = train_dataset.map(
preprocess_tableqa_function_training,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_eval:
max_target_length = data_args.val_max_target_length
if "validation" not in datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = datasets["validation"]
if data_args.max_eval_samples is not None:
eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
eval_dataset = eval_dataset.map(
preprocess_tableqa_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_predict:
max_target_length = data_args.val_max_target_length
if "test" not in datasets:
raise ValueError("--do_predict requires a test dataset")
predict_dataset = datasets["test"]
if data_args.max_predict_samples is not None:
predict_dataset = predict_dataset.select(range(data_args.max_predict_samples))
predict_dataset = predict_dataset.map(
preprocess_tableqa_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# Data collator
label_pad_token_id = -100 if data_args.ignore_pad_token_for_loss else tokenizer.pad_token_id
data_collator = DataCollatorForSeq2Seq(
tokenizer,
model=model,
label_pad_token_id=label_pad_token_id,
pad_to_multiple_of=8 if training_args.fp16 else None,
)
def postprocess_text(preds, labels):
preds = [pred.strip() for pred in preds]
labels = [label.strip() for label in labels]
return preds, labels
def compute_metrics(eval_preds):
preds, labels = eval_preds
if isinstance(preds, tuple):
preds = preds[0]
decoded_preds = tokenizer.batch_decode(preds, skip_special_tokens=True)
if data_args.ignore_pad_token_for_loss:
# Replace -100 in the labels as we can't decode them.
labels = np.where(labels != -100, labels, tokenizer.pad_token_id)
decoded_labels = tokenizer.batch_decode(labels, skip_special_tokens=True)
# Some simple post-processing
decoded_preds, decoded_labels = postprocess_text(decoded_preds, decoded_labels)
delimiter = ", "
# define example evaluation
def evaluate_example(predict_str: str, ground_str: str):
predict_spans = predict_str.split(delimiter)
ground_spans = ground_str.split(delimiter)
predict_values = defaultdict(lambda: 0)
ground_values = defaultdict(lambda: 0)
for span in predict_spans:
try:
predict_values[float(span)] += 1
except ValueError:
predict_values[span.strip()] += 1
for span in ground_spans:
try:
ground_values[float(span)] += 1
except ValueError:
ground_values[span.strip()] += 1
is_correct = predict_values == ground_values
return is_correct
def get_denotation_accuracy(predictions: List[str], references: List[str]):
assert len(predictions) == len(references)
correct_num = 0
for predict_str, ground_str in zip(predictions, references):
is_correct = evaluate_example(predict_str.lower(), ground_str.lower())
if is_correct:
correct_num += 1
return correct_num / len(predictions)
accuracy = get_denotation_accuracy(decoded_preds, decoded_labels)
result = {"denotation_accuracy": accuracy}
return result
# Initialize our Trainer
trainer = Seq2SeqTrainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train else None,
eval_dataset=eval_dataset if training_args.do_eval else None,
tokenizer=tokenizer,
data_collator=data_collator,
compute_metrics=compute_metrics if training_args.predict_with_generate else None,
)
if training_args.do_train:
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
elif last_checkpoint is not None:
checkpoint = last_checkpoint
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model() # Saves the tokenizer too for easy upload
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
)
metrics["train_samples"] = min(max_train_samples, len(train_dataset))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate(
max_length=data_args.val_max_target_length, num_beams=data_args.num_beams, metric_key_prefix="eval"
)
max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
if training_args.do_predict:
logger.info("*** Predict ***")
predict_results = trainer.predict(
predict_dataset,
metric_key_prefix="predict",
max_length=data_args.val_max_target_length,
num_beams=data_args.num_beams,
)
metrics = predict_results.metrics
max_predict_samples = (
data_args.max_predict_samples if data_args.max_predict_samples is not None else len(predict_dataset)
)
metrics["predict_samples"] = min(max_predict_samples, len(predict_dataset))
trainer.log_metrics("predict", metrics)
trainer.save_metrics("predict", metrics)
if trainer.is_world_process_zero():
if training_args.predict_with_generate:
predictions = tokenizer.batch_decode(
predict_results.predictions, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
predictions = [pred.strip() for pred in predictions]
output_prediction_file = os.path.join(training_args.output_dir, "tapex_predictions.txt")
with open(output_prediction_file, "w") as writer:
writer.write("\n".join(predictions))
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/tapex/run_wikisql_with_tapex.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The Microsoft and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for tapex on table-based fact verification tasks.
Adapted from script: https://github.com/huggingface/transformers/blob/master/examples/pytorch/text-classification/run_glue.py
"""
import logging
import os
import random
import sys
from dataclasses import dataclass, field
from typing import Optional
import datasets
import numpy as np
import pandas as pd
from datasets import load_dataset
import transformers
from transformers import (
AutoConfig,
BartForSequenceClassification,
DataCollatorWithPadding,
EvalPrediction,
HfArgumentParser,
TapexTokenizer,
Trainer,
TrainingArguments,
default_data_collator,
set_seed,
)
from transformers.trainer_utils import get_last_checkpoint
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.17.0.dev0")
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/text-classification/requirements.txt")
logger = logging.getLogger(__name__)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: Optional[str] = field(
default="tab_fact", metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default="tab_fact",
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."},
)
max_seq_length: int = field(
default=1024,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
train_file: Optional[str] = field(
default=None, metadata={"help": "A csv or a json file containing the training data."}
)
validation_file: Optional[str] = field(
default=None, metadata={"help": "A csv or a json file containing the validation data."}
)
test_file: Optional[str] = field(default=None, metadata={"help": "A csv or a json file containing the test data."})
def __post_init__(self):
if self.dataset_name is not None:
pass
elif self.train_file is None or self.validation_file is None:
raise ValueError("Need either a GLUE task, a training/validation file or a dataset name.")
else:
train_extension = self.train_file.split(".")[-1]
assert train_extension in ["csv", "json"], "`train_file` should be a csv or a json file."
validation_extension = self.validation_file.split(".")[-1]
assert (
validation_extension == train_extension
), "`validation_file` should have the same extension (csv or json) as `train_file`."
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
default=None, metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
log_level = training_args.get_process_log_level()
logger.setLevel(log_level)
datasets.utils.logging.set_verbosity(log_level)
transformers.utils.logging.set_verbosity(log_level)
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
logger.info(f"Training/evaluation parameters {training_args}")
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON training and evaluation files (see below)
# or specify a GLUE benchmark task (the dataset will be downloaded automatically from the datasets Hub).
#
# For JSON files, this script will use the `question` column for the input question and `table` column for the corresponding table.
#
# If the CSVs/JSONs contain only one non-label column, the script does single sentence classification on this
# single column. You can easily tweak this behavior (see below)
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(
data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir
)
else:
# Loading a dataset from your local files.
# CSV/JSON training and evaluation files are needed.
data_files = {"train": data_args.train_file, "validation": data_args.validation_file}
# Get the test dataset: you can provide your own CSV/JSON test file (see below)
# when you use `do_predict` without specifying a GLUE benchmark task.
if training_args.do_predict:
if data_args.test_file is not None:
train_extension = data_args.train_file.split(".")[-1]
test_extension = data_args.test_file.split(".")[-1]
assert (
test_extension == train_extension
), "`test_file` should have the same extension (csv or json) as `train_file`."
data_files["test"] = data_args.test_file
else:
raise ValueError("Need either a GLUE task or a test file for `do_predict`.")
for key in data_files.keys():
logger.info(f"load a local file for {key}: {data_files[key]}")
if data_args.train_file.endswith(".csv"):
# Loading a dataset from local csv files
raw_datasets = load_dataset("csv", data_files=data_files, cache_dir=model_args.cache_dir)
else:
# Loading a dataset from local json files
raw_datasets = load_dataset("json", data_files=data_files, cache_dir=model_args.cache_dir)
# See more about loading any type of standard or custom dataset at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Labels
label_list = raw_datasets["train"].features["label"].names
num_labels = len(label_list)
# Load pretrained model and tokenizer
#
# In distributed training, the .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
)
# load tapex tokenizer
tokenizer = TapexTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
add_prefix_space=True,
)
model = BartForSequenceClassification.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
use_auth_token=True if model_args.use_auth_token else None,
)
# Padding strategy
if data_args.pad_to_max_length:
padding = "max_length"
else:
# We will pad later, dynamically at batch creation, to the max sequence length in each batch
padding = False
# Some models have set the order of the labels to use, so let's make sure we do use it.
model.config.label2id = {"Refused": 0, "Entailed": 1}
model.config.id2label = {0: "Refused", 1: "Entailed"}
if data_args.max_seq_length > tokenizer.model_max_length:
logger.warning(
f"The max_seq_length passed ({data_args.max_seq_length}) is larger than the maximum length for the"
f"model ({tokenizer.model_max_length}). Using max_seq_length={tokenizer.model_max_length}."
)
max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
def preprocess_tabfact_function(examples):
# Tokenize the texts
def _convert_table_text_to_pandas(_table_text):
"""Runs the structured pandas table object for _table_text.
An example _table_text can be: round#clubs remaining\nfirst round#156\n
"""
_table_content = [_table_row.split("#") for _table_row in _table_text.strip("\n").split("\n")]
_table_pd = pd.DataFrame.from_records(_table_content[1:], columns=_table_content[0])
return _table_pd
questions = examples["statement"]
tables = list(map(_convert_table_text_to_pandas, examples["table_text"]))
result = tokenizer(tables, questions, padding=padding, max_length=max_seq_length, truncation=True)
result["label"] = examples["label"]
return result
with training_args.main_process_first(desc="dataset map pre-processing"):
raw_datasets = raw_datasets.map(
preprocess_tabfact_function,
batched=True,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on dataset",
)
if training_args.do_train:
if "train" not in raw_datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = raw_datasets["train"]
if data_args.max_train_samples is not None:
train_dataset = train_dataset.select(range(data_args.max_train_samples))
if training_args.do_eval:
if "validation" not in raw_datasets and "validation_matched" not in raw_datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = raw_datasets["validation"]
if data_args.max_eval_samples is not None:
eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
if training_args.do_predict or data_args.test_file is not None:
if "test" not in raw_datasets and "test_matched" not in raw_datasets:
raise ValueError("--do_predict requires a test dataset")
predict_dataset = raw_datasets["test"]
if data_args.max_predict_samples is not None:
predict_dataset = predict_dataset.select(range(data_args.max_predict_samples))
# Log a few random samples from the training set:
if training_args.do_train:
for index in random.sample(range(len(train_dataset)), 3):
logger.info(f"Sample {index} of the training set: {train_dataset[index]}.")
# You can define your custom compute_metrics function. It takes an `EvalPrediction` object (a namedtuple with a
# predictions and label_ids field) and has to return a dictionary string to float.
def compute_metrics(p: EvalPrediction):
preds = p.predictions[0] if isinstance(p.predictions, tuple) else p.predictions
preds = np.argmax(preds, axis=1)
return {"accuracy": (preds == p.label_ids).astype(np.float32).mean().item()}
# Data collator will default to DataCollatorWithPadding, so we change it if we already did the padding.
if data_args.pad_to_max_length:
data_collator = default_data_collator
elif training_args.fp16:
data_collator = DataCollatorWithPadding(tokenizer, pad_to_multiple_of=8)
else:
data_collator = None
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train else None,
eval_dataset=eval_dataset if training_args.do_eval else None,
compute_metrics=compute_metrics,
tokenizer=tokenizer,
data_collator=data_collator,
)
# Training
if training_args.do_train:
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
elif last_checkpoint is not None:
checkpoint = last_checkpoint
train_result = trainer.train(resume_from_checkpoint=checkpoint)
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
)
metrics["train_samples"] = min(max_train_samples, len(train_dataset))
trainer.save_model() # Saves the tokenizer too for easy upload
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate(eval_dataset=eval_dataset)
max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
if training_args.do_predict:
logger.info("*** Predict ***")
# Removing the `label` columns because it contains -1 and Trainer won't like that.
predict_dataset = predict_dataset.remove_columns("label")
predictions = trainer.predict(predict_dataset, metric_key_prefix="predict").predictions
predictions = np.argmax(predictions, axis=1)
output_predict_file = os.path.join(training_args.output_dir, "predict_results_tabfact.txt")
if trainer.is_world_process_zero():
with open(output_predict_file, "w") as writer:
logger.info("***** Predict Results *****")
writer.write("index\tprediction\n")
for index, item in enumerate(predictions):
item = label_list[item]
writer.write(f"{index}\t{item}\n")
kwargs = {"finetuned_from": model_args.model_name_or_path, "tasks": "text-classification"}
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/tapex/run_tabfact_with_tapex.py |
# Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Once a model has been fine-pruned, the weights that are masked during the forward pass can be pruned once for all.
For instance, once the a model from the :class:`~emmental.MaskedBertForSequenceClassification` is trained, it can be saved (and then loaded)
as a standard :class:`~transformers.BertForSequenceClassification`.
"""
import argparse
import os
import shutil
import torch
from emmental.modules import MagnitudeBinarizer, ThresholdBinarizer, TopKBinarizer
def main(args):
pruning_method = args.pruning_method
threshold = args.threshold
model_name_or_path = args.model_name_or_path.rstrip("/")
target_model_path = args.target_model_path
print(f"Load fine-pruned model from {model_name_or_path}")
model = torch.load(os.path.join(model_name_or_path, "pytorch_model.bin"))
pruned_model = {}
for name, tensor in model.items():
if "embeddings" in name or "LayerNorm" in name or "pooler" in name:
pruned_model[name] = tensor
print(f"Copied layer {name}")
elif "classifier" in name or "qa_output" in name:
pruned_model[name] = tensor
print(f"Copied layer {name}")
elif "bias" in name:
pruned_model[name] = tensor
print(f"Copied layer {name}")
else:
if pruning_method == "magnitude":
mask = MagnitudeBinarizer.apply(inputs=tensor, threshold=threshold)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
elif pruning_method == "topK":
if "mask_scores" in name:
continue
prefix_ = name[:-6]
scores = model[f"{prefix_}mask_scores"]
mask = TopKBinarizer.apply(scores, threshold)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
elif pruning_method == "sigmoied_threshold":
if "mask_scores" in name:
continue
prefix_ = name[:-6]
scores = model[f"{prefix_}mask_scores"]
mask = ThresholdBinarizer.apply(scores, threshold, True)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
elif pruning_method == "l0":
if "mask_scores" in name:
continue
prefix_ = name[:-6]
scores = model[f"{prefix_}mask_scores"]
l, r = -0.1, 1.1
s = torch.sigmoid(scores)
s_bar = s * (r - l) + l
mask = s_bar.clamp(min=0.0, max=1.0)
pruned_model[name] = tensor * mask
print(f"Pruned layer {name}")
else:
raise ValueError("Unknown pruning method")
if target_model_path is None:
target_model_path = os.path.join(
os.path.dirname(model_name_or_path), f"bertarized_{os.path.basename(model_name_or_path)}"
)
if not os.path.isdir(target_model_path):
shutil.copytree(model_name_or_path, target_model_path)
print(f"\nCreated folder {target_model_path}")
torch.save(pruned_model, os.path.join(target_model_path, "pytorch_model.bin"))
print("\nPruned model saved! See you later!")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--pruning_method",
choices=["l0", "magnitude", "topK", "sigmoied_threshold"],
type=str,
required=True,
help=(
"Pruning Method (l0 = L0 regularization, magnitude = Magnitude pruning, topK = Movement pruning,"
" sigmoied_threshold = Soft movement pruning)"
),
)
parser.add_argument(
"--threshold",
type=float,
required=False,
help=(
"For `magnitude` and `topK`, it is the level of remaining weights (in %) in the fine-pruned model."
"For `sigmoied_threshold`, it is the threshold \tau against which the (sigmoied) scores are compared."
"Not needed for `l0`"
),
)
parser.add_argument(
"--model_name_or_path",
type=str,
required=True,
help="Folder containing the model that was previously fine-pruned",
)
parser.add_argument(
"--target_model_path",
default=None,
type=str,
required=False,
help="Folder containing the model that was previously fine-pruned",
)
args = parser.parse_args()
main(args)
| transformers-main | examples/research_projects/movement-pruning/bertarize.py |
# Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Count remaining (non-zero) weights in the encoder (i.e. the transformer layers).
Sparsity and remaining weights levels are equivalent: sparsity % = 100 - remaining weights %.
"""
import argparse
import os
import torch
from emmental.modules import ThresholdBinarizer, TopKBinarizer
def main(args):
serialization_dir = args.serialization_dir
pruning_method = args.pruning_method
threshold = args.threshold
st = torch.load(os.path.join(serialization_dir, "pytorch_model.bin"), map_location="cpu")
remaining_count = 0 # Number of remaining (not pruned) params in the encoder
encoder_count = 0 # Number of params in the encoder
print("name".ljust(60, " "), "Remaining Weights %", "Remaining Weight")
for name, param in st.items():
if "encoder" not in name:
continue
if "mask_scores" in name:
if pruning_method == "topK":
mask_ones = TopKBinarizer.apply(param, threshold).sum().item()
elif pruning_method == "sigmoied_threshold":
mask_ones = ThresholdBinarizer.apply(param, threshold, True).sum().item()
elif pruning_method == "l0":
l, r = -0.1, 1.1
s = torch.sigmoid(param)
s_bar = s * (r - l) + l
mask = s_bar.clamp(min=0.0, max=1.0)
mask_ones = (mask > 0.0).sum().item()
else:
raise ValueError("Unknown pruning method")
remaining_count += mask_ones
print(name.ljust(60, " "), str(round(100 * mask_ones / param.numel(), 3)).ljust(20, " "), str(mask_ones))
else:
encoder_count += param.numel()
if "bias" in name or "LayerNorm" in name:
remaining_count += param.numel()
print("")
print("Remaining Weights (global) %: ", 100 * remaining_count / encoder_count)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--pruning_method",
choices=["l0", "topK", "sigmoied_threshold"],
type=str,
required=True,
help=(
"Pruning Method (l0 = L0 regularization, topK = Movement pruning, sigmoied_threshold = Soft movement"
" pruning)"
),
)
parser.add_argument(
"--threshold",
type=float,
required=False,
help=(
"For `topK`, it is the level of remaining weights (in %) in the fine-pruned model."
"For `sigmoied_threshold`, it is the threshold \tau against which the (sigmoied) scores are compared."
"Not needed for `l0`"
),
)
parser.add_argument(
"--serialization_dir",
type=str,
required=True,
help="Folder containing the model that was previously fine-pruned",
)
args = parser.parse_args()
main(args)
| transformers-main | examples/research_projects/movement-pruning/counts_parameters.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-pruning Masked BERT for question-answering on SQuAD."""
import argparse
import glob
import logging
import os
import random
import timeit
import numpy as np
import torch
from emmental import MaskedBertConfig, MaskedBertForQuestionAnswering
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertForQuestionAnswering,
BertTokenizer,
get_linear_schedule_with_warmup,
squad_convert_examples_to_features,
)
from transformers.data.metrics.squad_metrics import (
compute_predictions_log_probs,
compute_predictions_logits,
squad_evaluate,
)
from transformers.data.processors.squad import SquadResult, SquadV1Processor, SquadV2Processor
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForQuestionAnswering, BertTokenizer),
"masked_bert": (MaskedBertConfig, MaskedBertForQuestionAnswering, BertTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def schedule_threshold(
step: int,
total_step: int,
warmup_steps: int,
initial_threshold: float,
final_threshold: float,
initial_warmup: int,
final_warmup: int,
final_lambda: float,
):
if step <= initial_warmup * warmup_steps:
threshold = initial_threshold
elif step > (total_step - final_warmup * warmup_steps):
threshold = final_threshold
else:
spars_warmup_steps = initial_warmup * warmup_steps
spars_schedu_steps = (final_warmup + initial_warmup) * warmup_steps
mul_coeff = 1 - (step - spars_warmup_steps) / (total_step - spars_schedu_steps)
threshold = final_threshold + (initial_threshold - final_threshold) * (mul_coeff**3)
regu_lambda = final_lambda * threshold / final_threshold
return threshold, regu_lambda
def regularization(model: nn.Module, mode: str):
regu, counter = 0, 0
for name, param in model.named_parameters():
if "mask_scores" in name:
if mode == "l1":
regu += torch.norm(torch.sigmoid(param), p=1) / param.numel()
elif mode == "l0":
regu += torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1)).sum() / param.numel()
else:
ValueError("Don't know this mode.")
counter += 1
return regu / counter
def to_list(tensor):
return tensor.detach().cpu().tolist()
def train(args, train_dataset, model, tokenizer, teacher=None):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter(log_dir=args.output_dir)
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if "mask_score" in n and p.requires_grad],
"lr": args.mask_scores_learning_rate,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and not any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model,
device_ids=[args.local_rank],
output_device=args.local_rank,
find_unused_parameters=True,
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
# Distillation
if teacher is not None:
logger.info(" Training with distillation")
global_step = 1
# Global TopK
if args.global_topk:
threshold_mem = None
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
# set global_step to global_step of last saved checkpoint from model path
try:
checkpoint_suffix = args.model_name_or_path.split("-")[-1].split("/")[0]
global_step = int(checkpoint_suffix)
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(" Will skip the first %d steps in the first epoch", steps_trained_in_current_epoch)
except ValueError:
logger.info(" Starting fine-tuning.")
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained, int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0]
)
# Added here for reproducibility
set_seed(args)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
threshold, regu_lambda = schedule_threshold(
step=global_step,
total_step=t_total,
warmup_steps=args.warmup_steps,
final_threshold=args.final_threshold,
initial_threshold=args.initial_threshold,
final_warmup=args.final_warmup,
initial_warmup=args.initial_warmup,
final_lambda=args.final_lambda,
)
# Global TopK
if args.global_topk:
if threshold == 1.0:
threshold = -1e2 # Or an indefinitely low quantity
else:
if (threshold_mem is None) or (global_step % args.global_topk_frequency_compute == 0):
# Sort all the values to get the global topK
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
threshold = threshold_mem
else:
threshold = threshold_mem
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"token_type_ids": batch[2],
"start_positions": batch[3],
"end_positions": batch[4],
}
if args.model_type in ["xlm", "roberta", "distilbert", "camembert"]:
del inputs["token_type_ids"]
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[5], "p_mask": batch[6]})
if args.version_2_with_negative:
inputs.update({"is_impossible": batch[7]})
if hasattr(model, "config") and hasattr(model.config, "lang2id"):
inputs.update(
{"langs": (torch.ones(batch[0].shape, dtype=torch.int64) * args.lang_id).to(args.device)}
)
if "masked" in args.model_type:
inputs["threshold"] = threshold
outputs = model(**inputs)
# model outputs are always tuple in transformers (see doc)
loss, start_logits_stu, end_logits_stu = outputs
# Distillation loss
if teacher is not None:
with torch.no_grad():
start_logits_tea, end_logits_tea = teacher(
input_ids=inputs["input_ids"],
token_type_ids=inputs["token_type_ids"],
attention_mask=inputs["attention_mask"],
)
loss_start = nn.functional.kl_div(
input=nn.functional.log_softmax(start_logits_stu / args.temperature, dim=-1),
target=nn.functional.softmax(start_logits_tea / args.temperature, dim=-1),
reduction="batchmean",
) * (args.temperature**2)
loss_end = nn.functional.kl_div(
input=nn.functional.log_softmax(end_logits_stu / args.temperature, dim=-1),
target=nn.functional.softmax(end_logits_tea / args.temperature, dim=-1),
reduction="batchmean",
) * (args.temperature**2)
loss_logits = (loss_start + loss_end) / 2.0
loss = args.alpha_distil * loss_logits + args.alpha_ce * loss
# Regularization
if args.regularization is not None:
regu_ = regularization(model=model, mode=args.regularization)
loss = loss + regu_lambda * regu_
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
tb_writer.add_scalar("threshold", threshold, global_step)
for name, param in model.named_parameters():
if not param.requires_grad:
continue
tb_writer.add_scalar("parameter_mean/" + name, param.data.mean(), global_step)
tb_writer.add_scalar("parameter_std/" + name, param.data.std(), global_step)
tb_writer.add_scalar("parameter_min/" + name, param.data.min(), global_step)
tb_writer.add_scalar("parameter_max/" + name, param.data.max(), global_step)
if "pooler" in name:
continue
tb_writer.add_scalar("grad_mean/" + name, param.grad.data.mean(), global_step)
tb_writer.add_scalar("grad_std/" + name, param.grad.data.std(), global_step)
if args.regularization is not None and "mask_scores" in name:
if args.regularization == "l1":
perc = (torch.sigmoid(param) > threshold).sum().item() / param.numel()
elif args.regularization == "l0":
perc = (torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1))).sum().item() / param.numel()
tb_writer.add_scalar("retained_weights_perc/" + name, perc, global_step)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
# Log metrics
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Only evaluate when single GPU otherwise metrics may not average well
if args.local_rank == -1 and args.evaluate_during_training:
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
learning_rate_scalar = scheduler.get_lr()
tb_writer.add_scalar("lr", learning_rate_scalar[0], global_step)
if len(learning_rate_scalar) > 1:
for idx, lr in enumerate(learning_rate_scalar[1:]):
tb_writer.add_scalar(f"lr/{idx+1}", lr, global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
if teacher is not None:
tb_writer.add_scalar("loss/distil", loss_logits.item(), global_step)
if args.regularization is not None:
tb_writer.add_scalar("loss/regularization", regu_.item(), global_step)
if (teacher is not None) or (args.regularization is not None):
if (teacher is not None) and (args.regularization is not None):
tb_writer.add_scalar(
"loss/instant_ce",
(loss.item() - regu_lambda * regu_.item() - args.alpha_distil * loss_logits.item())
/ args.alpha_ce,
global_step,
)
elif teacher is not None:
tb_writer.add_scalar(
"loss/instant_ce",
(loss.item() - args.alpha_distil * loss_logits.item()) / args.alpha_ce,
global_step,
)
else:
tb_writer.add_scalar(
"loss/instant_ce", loss.item() - regu_lambda * regu_.item(), global_step
)
logging_loss = tr_loss
# Save model checkpoint
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
dataset, examples, features = load_and_cache_examples(args, tokenizer, evaluate=True, output_examples=True)
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(dataset)
eval_dataloader = DataLoader(dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
all_results = []
start_time = timeit.default_timer()
# Global TopK
if args.global_topk:
threshold_mem = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"token_type_ids": batch[2],
}
if args.model_type in ["xlm", "roberta", "distilbert", "camembert"]:
del inputs["token_type_ids"]
example_indices = batch[3]
# XLNet and XLM use more arguments for their predictions
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[4], "p_mask": batch[5]})
# for lang_id-sensitive xlm models
if hasattr(model, "config") and hasattr(model.config, "lang2id"):
inputs.update(
{"langs": (torch.ones(batch[0].shape, dtype=torch.int64) * args.lang_id).to(args.device)}
)
if "masked" in args.model_type:
inputs["threshold"] = args.final_threshold
if args.global_topk:
if threshold_mem is None:
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * args.final_threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
inputs["threshold"] = threshold_mem
outputs = model(**inputs)
for i, example_index in enumerate(example_indices):
eval_feature = features[example_index.item()]
unique_id = int(eval_feature.unique_id)
output = [to_list(output[i]) for output in outputs]
# Some models (XLNet, XLM) use 5 arguments for their predictions, while the other "simpler"
# models only use two.
if len(output) >= 5:
start_logits = output[0]
start_top_index = output[1]
end_logits = output[2]
end_top_index = output[3]
cls_logits = output[4]
result = SquadResult(
unique_id,
start_logits,
end_logits,
start_top_index=start_top_index,
end_top_index=end_top_index,
cls_logits=cls_logits,
)
else:
start_logits, end_logits = output
result = SquadResult(unique_id, start_logits, end_logits)
all_results.append(result)
evalTime = timeit.default_timer() - start_time
logger.info(" Evaluation done in total %f secs (%f sec per example)", evalTime, evalTime / len(dataset))
# Compute predictions
output_prediction_file = os.path.join(args.output_dir, "predictions_{}.json".format(prefix))
output_nbest_file = os.path.join(args.output_dir, "nbest_predictions_{}.json".format(prefix))
if args.version_2_with_negative:
output_null_log_odds_file = os.path.join(args.output_dir, "null_odds_{}.json".format(prefix))
else:
output_null_log_odds_file = None
# XLNet and XLM use a more complex post-processing procedure
if args.model_type in ["xlnet", "xlm"]:
start_n_top = model.config.start_n_top if hasattr(model, "config") else model.module.config.start_n_top
end_n_top = model.config.end_n_top if hasattr(model, "config") else model.module.config.end_n_top
predictions = compute_predictions_log_probs(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
start_n_top,
end_n_top,
args.version_2_with_negative,
tokenizer,
args.verbose_logging,
)
else:
predictions = compute_predictions_logits(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
args.do_lower_case,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
args.verbose_logging,
args.version_2_with_negative,
args.null_score_diff_threshold,
tokenizer,
)
# Compute the F1 and exact scores.
results = squad_evaluate(examples, predictions)
return results
def load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False):
if args.local_rank not in [-1, 0] and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
# Load data features from cache or dataset file
input_dir = args.data_dir if args.data_dir else "."
cached_features_file = os.path.join(
input_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
args.tokenizer_name
if args.tokenizer_name
else list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
list(filter(None, args.predict_file.split("/"))).pop()
if evaluate
else list(filter(None, args.train_file.split("/"))).pop(),
),
)
# Init features and dataset from cache if it exists
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features_and_dataset = torch.load(cached_features_file)
features, dataset, examples = (
features_and_dataset["features"],
features_and_dataset["dataset"],
features_and_dataset["examples"],
)
else:
logger.info("Creating features from dataset file at %s", input_dir)
if not args.data_dir and ((evaluate and not args.predict_file) or (not evaluate and not args.train_file)):
try:
import tensorflow_datasets as tfds
except ImportError:
raise ImportError("If not data_dir is specified, tensorflow_datasets needs to be installed.")
if args.version_2_with_negative:
logger.warning("tensorflow_datasets does not handle version 2 of SQuAD.")
tfds_examples = tfds.load("squad")
examples = SquadV1Processor().get_examples_from_dataset(tfds_examples, evaluate=evaluate)
else:
processor = SquadV2Processor() if args.version_2_with_negative else SquadV1Processor()
if evaluate:
examples = processor.get_dev_examples(args.data_dir, filename=args.predict_file)
else:
examples = processor.get_train_examples(args.data_dir, filename=args.train_file)
features, dataset = squad_convert_examples_to_features(
examples=examples,
tokenizer=tokenizer,
max_seq_length=args.max_seq_length,
doc_stride=args.doc_stride,
max_query_length=args.max_query_length,
is_training=not evaluate,
return_dataset="pt",
threads=args.threads,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save({"features": features, "dataset": dataset, "examples": examples}, cached_features_file)
if args.local_rank == 0 and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
if output_examples:
return dataset, examples, features
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model checkpoints and predictions will be written.",
)
# Other parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
help="The input data dir. Should contain the .json files for the task."
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--train_file",
default=None,
type=str,
help="The input training file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--predict_file",
default=None,
type=str,
help="The input evaluation file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--version_2_with_negative",
action="store_true",
help="If true, the SQuAD examples contain some that do not have an answer.",
)
parser.add_argument(
"--null_score_diff_threshold",
type=float,
default=0.0,
help="If null_score - best_non_null is greater than the threshold predict null.",
)
parser.add_argument(
"--max_seq_length",
default=384,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. Sequences "
"longer than this will be truncated, and sequences shorter than this will be padded."
),
)
parser.add_argument(
"--doc_stride",
default=128,
type=int,
help="When splitting up a long document into chunks, how much stride to take between chunks.",
)
parser.add_argument(
"--max_query_length",
default=64,
type=int,
help=(
"The maximum number of tokens for the question. Questions longer than this will "
"be truncated to this length."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Run evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
# Pruning parameters
parser.add_argument(
"--mask_scores_learning_rate",
default=1e-2,
type=float,
help="The Adam initial learning rate of the mask scores.",
)
parser.add_argument(
"--initial_threshold", default=1.0, type=float, help="Initial value of the threshold (for scheduling)."
)
parser.add_argument(
"--final_threshold", default=0.7, type=float, help="Final value of the threshold (for scheduling)."
)
parser.add_argument(
"--initial_warmup",
default=1,
type=int,
help=(
"Run `initial_warmup` * `warmup_steps` steps of threshold warmup during which threshold stays"
"at its `initial_threshold` value (sparsity schedule)."
),
)
parser.add_argument(
"--final_warmup",
default=2,
type=int,
help=(
"Run `final_warmup` * `warmup_steps` steps of threshold cool-down during which threshold stays"
"at its final_threshold value (sparsity schedule)."
),
)
parser.add_argument(
"--pruning_method",
default="topK",
type=str,
help=(
"Pruning Method (l0 = L0 regularization, magnitude = Magnitude pruning, topK = Movement pruning,"
" sigmoied_threshold = Soft movement pruning)."
),
)
parser.add_argument(
"--mask_init",
default="constant",
type=str,
help="Initialization method for the mask scores. Choices: constant, uniform, kaiming.",
)
parser.add_argument(
"--mask_scale", default=0.0, type=float, help="Initialization parameter for the chosen initialization method."
)
parser.add_argument("--regularization", default=None, help="Add L0 or L1 regularization to the mask scores.")
parser.add_argument(
"--final_lambda",
default=0.0,
type=float,
help="Regularization intensity (used in conjunction with `regularization`.",
)
parser.add_argument("--global_topk", action="store_true", help="Global TopK on the Scores.")
parser.add_argument(
"--global_topk_frequency_compute",
default=25,
type=int,
help="Frequency at which we compute the TopK global threshold.",
)
# Distillation parameters (optional)
parser.add_argument(
"--teacher_type",
default=None,
type=str,
help=(
"Teacher type. Teacher tokenizer and student (model) tokenizer must output the same tokenization. Only for"
" distillation."
),
)
parser.add_argument(
"--teacher_name_or_path",
default=None,
type=str,
help="Path to the already SQuAD fine-tuned teacher model. Only for distillation.",
)
parser.add_argument(
"--alpha_ce", default=0.5, type=float, help="Cross entropy loss linear weight. Only for distillation."
)
parser.add_argument(
"--alpha_distil", default=0.5, type=float, help="Distillation loss linear weight. Only for distillation."
)
parser.add_argument(
"--temperature", default=2.0, type=float, help="Distillation temperature. Only for distillation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs",
default=3.0,
type=float,
help="Total number of training epochs to perform.",
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument(
"--n_best_size",
default=20,
type=int,
help="The total number of n-best predictions to generate in the nbest_predictions.json output file.",
)
parser.add_argument(
"--max_answer_length",
default=30,
type=int,
help=(
"The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another."
),
)
parser.add_argument(
"--verbose_logging",
action="store_true",
help=(
"If true, all of the warnings related to data processing will be printed. "
"A number of warnings are expected for a normal SQuAD evaluation."
),
)
parser.add_argument(
"--lang_id",
default=0,
type=int,
help=(
"language id of input for language-specific xlm models (see"
" tokenization_xlm.PRETRAINED_INIT_CONFIGURATION)"
),
)
parser.add_argument("--logging_steps", type=int, default=500, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=500, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--threads", type=int, default=1, help="multiple threads for converting example to features")
args = parser.parse_args()
# Regularization
if args.regularization == "null":
args.regularization = None
if args.doc_stride >= args.max_seq_length - args.max_query_length:
logger.warning(
"WARNING - You've set a doc stride which may be superior to the document length in some "
"examples. This could result in errors when building features from the examples. Please reduce the doc "
"stride or increase the maximum length to ensure the features are correctly built."
)
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of synchronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set seed
set_seed(args)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
cache_dir=args.cache_dir if args.cache_dir else None,
pruning_method=args.pruning_method,
mask_init=args.mask_init,
mask_scale=args.mask_scale,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.teacher_type is not None:
assert args.teacher_name_or_path is not None
assert args.alpha_distil > 0.0
assert args.alpha_distil + args.alpha_ce > 0.0
teacher_config_class, teacher_model_class, _ = MODEL_CLASSES[args.teacher_type]
teacher_config = teacher_config_class.from_pretrained(args.teacher_name_or_path)
teacher = teacher_model_class.from_pretrained(
args.teacher_name_or_path,
from_tf=False,
config=teacher_config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
teacher.to(args.device)
else:
teacher = None
if args.local_rank == 0:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Before we do anything with models, we want to ensure that we get fp16 execution of torch.einsum if args.fp16 is set.
# Otherwise it'll default to "promote" mode, and we'll get fp32 operations. Note that running `--fp16_opt_level="O2"` will
# remove the need for this code, but it is still valid.
if args.fp16:
try:
import apex
apex.amp.register_half_function(torch, "einsum")
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer, teacher=teacher)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Save the trained model and the tokenizer
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir) # , force_download=True)
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
model.to(args.device)
# Evaluation - we can ask to evaluate all the checkpoints (sub-directories) in a directory
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
if args.do_train:
logger.info("Loading checkpoints saved during training for evaluation")
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c)
for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
else:
logger.info("Loading checkpoint %s for evaluation", args.model_name_or_path)
checkpoints = [args.model_name_or_path]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
# Reload the model
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
model = model_class.from_pretrained(checkpoint) # , force_download=True)
model.to(args.device)
# Evaluate
result = evaluate(args, model, tokenizer, prefix=global_step)
result = {k + ("_{}".format(global_step) if global_step else ""): v for k, v in result.items()}
results.update(result)
logger.info("Results: {}".format(results))
predict_file = list(filter(None, args.predict_file.split("/"))).pop()
if not os.path.exists(os.path.join(args.output_dir, predict_file)):
os.makedirs(os.path.join(args.output_dir, predict_file))
output_eval_file = os.path.join(args.output_dir, predict_file, "eval_results.txt")
with open(output_eval_file, "w") as writer:
for key in sorted(results.keys()):
writer.write("%s = %s\n" % (key, str(results[key])))
return results
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/movement-pruning/masked_run_squad.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-pruning Masked BERT on sequence classification on GLUE."""
import argparse
import glob
import json
import logging
import os
import random
import numpy as np
import torch
from emmental import MaskedBertConfig, MaskedBertForSequenceClassification
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertForSequenceClassification,
BertTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForSequenceClassification, BertTokenizer),
"masked_bert": (MaskedBertConfig, MaskedBertForSequenceClassification, BertTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def schedule_threshold(
step: int,
total_step: int,
warmup_steps: int,
initial_threshold: float,
final_threshold: float,
initial_warmup: int,
final_warmup: int,
final_lambda: float,
):
if step <= initial_warmup * warmup_steps:
threshold = initial_threshold
elif step > (total_step - final_warmup * warmup_steps):
threshold = final_threshold
else:
spars_warmup_steps = initial_warmup * warmup_steps
spars_schedu_steps = (final_warmup + initial_warmup) * warmup_steps
mul_coeff = 1 - (step - spars_warmup_steps) / (total_step - spars_schedu_steps)
threshold = final_threshold + (initial_threshold - final_threshold) * (mul_coeff**3)
regu_lambda = final_lambda * threshold / final_threshold
return threshold, regu_lambda
def regularization(model: nn.Module, mode: str):
regu, counter = 0, 0
for name, param in model.named_parameters():
if "mask_scores" in name:
if mode == "l1":
regu += torch.norm(torch.sigmoid(param), p=1) / param.numel()
elif mode == "l0":
regu += torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1)).sum() / param.numel()
else:
ValueError("Don't know this mode.")
counter += 1
return regu / counter
def train(args, train_dataset, model, tokenizer, teacher=None):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter(log_dir=args.output_dir)
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if "mask_score" in n and p.requires_grad],
"lr": args.mask_scores_learning_rate,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and not any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": args.weight_decay,
},
{
"params": [
p
for n, p in model.named_parameters()
if "mask_score" not in n and p.requires_grad and any(nd in n for nd in no_decay)
],
"lr": args.learning_rate,
"weight_decay": 0.0,
},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model,
device_ids=[args.local_rank],
output_device=args.local_rank,
find_unused_parameters=True,
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
# Distillation
if teacher is not None:
logger.info(" Training with distillation")
global_step = 0
# Global TopK
if args.global_topk:
threshold_mem = None
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
# set global_step to global_step of last saved checkpoint from model path
try:
global_step = int(args.model_name_or_path.split("-")[-1].split("/")[0])
except ValueError:
global_step = 0
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(" Will skip the first %d steps in the first epoch", steps_trained_in_current_epoch)
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained,
int(args.num_train_epochs),
desc="Epoch",
disable=args.local_rank not in [-1, 0],
)
set_seed(args) # Added here for reproducibility
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
threshold, regu_lambda = schedule_threshold(
step=global_step,
total_step=t_total,
warmup_steps=args.warmup_steps,
final_threshold=args.final_threshold,
initial_threshold=args.initial_threshold,
final_warmup=args.final_warmup,
initial_warmup=args.initial_warmup,
final_lambda=args.final_lambda,
)
# Global TopK
if args.global_topk:
if threshold == 1.0:
threshold = -1e2 # Or an indefinitely low quantity
else:
if (threshold_mem is None) or (global_step % args.global_topk_frequency_compute == 0):
# Sort all the values to get the global topK
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
threshold = threshold_mem
else:
threshold = threshold_mem
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "masked_bert", "xlnet", "albert"] else None
) # XLM, DistilBERT, RoBERTa, and XLM-RoBERTa don't use segment_ids
if "masked" in args.model_type:
inputs["threshold"] = threshold
outputs = model(**inputs)
loss, logits_stu = outputs # model outputs are always tuple in transformers (see doc)
# Distillation loss
if teacher is not None:
if "token_type_ids" not in inputs:
inputs["token_type_ids"] = None if args.teacher_type == "xlm" else batch[2]
with torch.no_grad():
(logits_tea,) = teacher(
input_ids=inputs["input_ids"],
token_type_ids=inputs["token_type_ids"],
attention_mask=inputs["attention_mask"],
)
loss_logits = nn.functional.kl_div(
input=nn.functional.log_softmax(logits_stu / args.temperature, dim=-1),
target=nn.functional.softmax(logits_tea / args.temperature, dim=-1),
reduction="batchmean",
) * (args.temperature**2)
loss = args.alpha_distil * loss_logits + args.alpha_ce * loss
# Regularization
if args.regularization is not None:
regu_ = regularization(model=model, mode=args.regularization)
loss = loss + regu_lambda * regu_
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0 or (
# last step in epoch but step is always smaller than gradient_accumulation_steps
len(epoch_iterator) <= args.gradient_accumulation_steps
and (step + 1) == len(epoch_iterator)
):
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
tb_writer.add_scalar("threshold", threshold, global_step)
for name, param in model.named_parameters():
if not param.requires_grad:
continue
tb_writer.add_scalar("parameter_mean/" + name, param.data.mean(), global_step)
tb_writer.add_scalar("parameter_std/" + name, param.data.std(), global_step)
tb_writer.add_scalar("parameter_min/" + name, param.data.min(), global_step)
tb_writer.add_scalar("parameter_max/" + name, param.data.max(), global_step)
tb_writer.add_scalar("grad_mean/" + name, param.grad.data.mean(), global_step)
tb_writer.add_scalar("grad_std/" + name, param.grad.data.std(), global_step)
if args.regularization is not None and "mask_scores" in name:
if args.regularization == "l1":
perc = (torch.sigmoid(param) > threshold).sum().item() / param.numel()
elif args.regularization == "l0":
perc = (torch.sigmoid(param - 2 / 3 * np.log(0.1 / 1.1))).sum().item() / param.numel()
tb_writer.add_scalar("retained_weights_perc/" + name, perc, global_step)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
logs = {}
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
eval_key = "eval_{}".format(key)
logs[eval_key] = value
loss_scalar = (tr_loss - logging_loss) / args.logging_steps
learning_rate_scalar = scheduler.get_lr()
logs["learning_rate"] = learning_rate_scalar[0]
if len(learning_rate_scalar) > 1:
for idx, lr in enumerate(learning_rate_scalar[1:]):
logs[f"learning_rate/{idx+1}"] = lr
logs["loss"] = loss_scalar
if teacher is not None:
logs["loss/distil"] = loss_logits.item()
if args.regularization is not None:
logs["loss/regularization"] = regu_.item()
if (teacher is not None) or (args.regularization is not None):
if (teacher is not None) and (args.regularization is not None):
logs["loss/instant_ce"] = (
loss.item()
- regu_lambda * logs["loss/regularization"]
- args.alpha_distil * logs["loss/distil"]
) / args.alpha_ce
elif teacher is not None:
logs["loss/instant_ce"] = (
loss.item() - args.alpha_distil * logs["loss/distil"]
) / args.alpha_ce
else:
logs["loss/instant_ce"] = loss.item() - regu_lambda * logs["loss/regularization"]
logging_loss = tr_loss
for key, value in logs.items():
tb_writer.add_scalar(key, value, global_step)
print(json.dumps({**logs, **{"step": global_step}}))
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "/MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
# Global TopK
if args.global_topk:
threshold_mem = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if args.model_type in ["bert", "masked_bert", "xlnet", "albert"] else None
) # XLM, DistilBERT, RoBERTa, and XLM-RoBERTa don't use segment_ids
if "masked" in args.model_type:
inputs["threshold"] = args.final_threshold
if args.global_topk:
if threshold_mem is None:
concat = torch.cat(
[param.view(-1) for name, param in model.named_parameters() if "mask_scores" in name]
)
n = concat.numel()
kth = max(n - (int(n * args.final_threshold) + 1), 1)
threshold_mem = concat.kthvalue(kth).values.item()
inputs["threshold"] = threshold_mem
outputs = model(**inputs)
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
from scipy.special import softmax
probs = softmax(preds, axis=-1)
entropy = np.exp((-probs * np.log(probs)).sum(axis=-1).mean())
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
if entropy is not None:
result["eval_avg_entropy"] = entropy
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta", "xlmroberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
max_length=args.max_seq_length,
label_list=label_list,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training",
action="store_true",
help="Run evaluation during training at each logging step.",
)
parser.add_argument(
"--do_lower_case",
action="store_true",
help="Set this flag if you are using an uncased model.",
)
parser.add_argument(
"--per_gpu_train_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for training.",
)
parser.add_argument(
"--per_gpu_eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
# Pruning parameters
parser.add_argument(
"--mask_scores_learning_rate",
default=1e-2,
type=float,
help="The Adam initial learning rate of the mask scores.",
)
parser.add_argument(
"--initial_threshold", default=1.0, type=float, help="Initial value of the threshold (for scheduling)."
)
parser.add_argument(
"--final_threshold", default=0.7, type=float, help="Final value of the threshold (for scheduling)."
)
parser.add_argument(
"--initial_warmup",
default=1,
type=int,
help=(
"Run `initial_warmup` * `warmup_steps` steps of threshold warmup during which threshold stays"
"at its `initial_threshold` value (sparsity schedule)."
),
)
parser.add_argument(
"--final_warmup",
default=2,
type=int,
help=(
"Run `final_warmup` * `warmup_steps` steps of threshold cool-down during which threshold stays"
"at its final_threshold value (sparsity schedule)."
),
)
parser.add_argument(
"--pruning_method",
default="topK",
type=str,
help=(
"Pruning Method (l0 = L0 regularization, magnitude = Magnitude pruning, topK = Movement pruning,"
" sigmoied_threshold = Soft movement pruning)."
),
)
parser.add_argument(
"--mask_init",
default="constant",
type=str,
help="Initialization method for the mask scores. Choices: constant, uniform, kaiming.",
)
parser.add_argument(
"--mask_scale", default=0.0, type=float, help="Initialization parameter for the chosen initialization method."
)
parser.add_argument("--regularization", default=None, help="Add L0 or L1 regularization to the mask scores.")
parser.add_argument(
"--final_lambda",
default=0.0,
type=float,
help="Regularization intensity (used in conjunction with `regularization`.",
)
parser.add_argument("--global_topk", action="store_true", help="Global TopK on the Scores.")
parser.add_argument(
"--global_topk_frequency_compute",
default=25,
type=int,
help="Frequency at which we compute the TopK global threshold.",
)
# Distillation parameters (optional)
parser.add_argument(
"--teacher_type",
default=None,
type=str,
help=(
"Teacher type. Teacher tokenizer and student (model) tokenizer must output the same tokenization. Only for"
" distillation."
),
)
parser.add_argument(
"--teacher_name_or_path",
default=None,
type=str,
help="Path to the already fine-tuned teacher model. Only for distillation.",
)
parser.add_argument(
"--alpha_ce", default=0.5, type=float, help="Cross entropy loss linear weight. Only for distillation."
)
parser.add_argument(
"--alpha_distil", default=0.5, type=float, help="Distillation loss linear weight. Only for distillation."
)
parser.add_argument(
"--temperature", default=2.0, type=float, help="Distillation temperature. Only for distillation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs",
default=3.0,
type=float,
help="Total number of training epochs to perform.",
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir",
action="store_true",
help="Overwrite the content of the output directory",
)
parser.add_argument(
"--overwrite_cache",
action="store_true",
help="Overwrite the cached training and evaluation sets",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--local_rank", type=int, default=-1, help="For distributed training: local_rank")
args = parser.parse_args()
# Regularization
if args.regularization == "null":
args.regularization = None
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({args.output_dir}) already exists and is not empty. Use --overwrite_output_dir to"
" overcome."
)
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of synchronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
pruning_method=args.pruning_method,
mask_init=args.mask_init,
mask_scale=args.mask_scale,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
cache_dir=args.cache_dir if args.cache_dir else None,
do_lower_case=args.do_lower_case,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.teacher_type is not None:
assert args.teacher_name_or_path is not None
assert args.alpha_distil > 0.0
assert args.alpha_distil + args.alpha_ce > 0.0
teacher_config_class, teacher_model_class, _ = MODEL_CLASSES[args.teacher_type]
teacher_config = teacher_config_class.from_pretrained(args.teacher_name_or_path)
teacher = teacher_model_class.from_pretrained(
args.teacher_name_or_path,
from_tf=False,
config=teacher_config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
teacher.to(args.device)
else:
teacher = None
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer, teacher=teacher)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
model.to(args.device)
result = evaluate(args, model, tokenizer, prefix=prefix)
result = {k + "_{}".format(global_step): v for k, v in result.items()}
results.update(result)
return results
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/movement-pruning/masked_run_glue.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Masked BERT model configuration. It replicates the class `~transformers.BertConfig`
and adapts it to the specificities of MaskedBert (`pruning_method`, `mask_init` and `mask_scale`."""
import logging
from transformers.configuration_utils import PretrainedConfig
logger = logging.getLogger(__name__)
class MaskedBertConfig(PretrainedConfig):
"""
A class replicating the `~transformers.BertConfig` with additional parameters for pruning/masking configuration.
"""
model_type = "masked_bert"
def __init__(
self,
vocab_size=30522,
hidden_size=768,
num_hidden_layers=12,
num_attention_heads=12,
intermediate_size=3072,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
layer_norm_eps=1e-12,
pad_token_id=0,
pruning_method="topK",
mask_init="constant",
mask_scale=0.0,
**kwargs,
):
super().__init__(pad_token_id=pad_token_id, **kwargs)
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.layer_norm_eps = layer_norm_eps
self.pruning_method = pruning_method
self.mask_init = mask_init
self.mask_scale = mask_scale
| transformers-main | examples/research_projects/movement-pruning/emmental/configuration_bert_masked.py |
from .configuration_bert_masked import MaskedBertConfig
from .modeling_bert_masked import (
MaskedBertForMultipleChoice,
MaskedBertForQuestionAnswering,
MaskedBertForSequenceClassification,
MaskedBertForTokenClassification,
MaskedBertModel,
)
from .modules import *
| transformers-main | examples/research_projects/movement-pruning/emmental/__init__.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Masked Version of BERT. It replaces the `torch.nn.Linear` layers with
:class:`~emmental.MaskedLinear` and add an additional parameters in the forward pass to
compute the adaptive mask.
Built on top of `transformers.models.bert.modeling_bert`"""
import logging
import math
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from emmental import MaskedBertConfig
from emmental.modules import MaskedLinear
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.modeling_utils import PreTrainedModel, prune_linear_layer
from transformers.models.bert.modeling_bert import ACT2FN, load_tf_weights_in_bert
logger = logging.getLogger(__name__)
class BertEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=0)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if position_ids is None:
position_ids = torch.arange(seq_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).expand(input_shape)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
position_embeddings = self.position_embeddings(position_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + position_embeddings + token_type_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class BertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention heads (%d)"
% (config.hidden_size, config.num_attention_heads)
)
self.output_attentions = config.output_attentions
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = MaskedLinear(
config.hidden_size,
self.all_head_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.key = MaskedLinear(
config.hidden_size,
self.all_head_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.value = MaskedLinear(
config.hidden_size,
self.all_head_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
mixed_query_layer = self.query(hidden_states, threshold=threshold)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
if encoder_hidden_states is not None:
mixed_key_layer = self.key(encoder_hidden_states, threshold=threshold)
mixed_value_layer = self.value(encoder_hidden_states, threshold=threshold)
attention_mask = encoder_attention_mask
else:
mixed_key_layer = self.key(hidden_states, threshold=threshold)
mixed_value_layer = self.value(hidden_states, threshold=threshold)
query_layer = self.transpose_for_scores(mixed_query_layer)
key_layer = self.transpose_for_scores(mixed_key_layer)
value_layer = self.transpose_for_scores(mixed_value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in BertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if self.output_attentions else (context_layer,)
return outputs
class BertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = MaskedLinear(
config.hidden_size,
config.hidden_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor, threshold):
hidden_states = self.dense(hidden_states, threshold=threshold)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = BertSelfAttention(config)
self.output = BertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
mask = torch.ones(self.self.num_attention_heads, self.self.attention_head_size)
heads = set(heads) - self.pruned_heads # Convert to set and remove already pruned heads
for head in heads:
# Compute how many pruned heads are before the head and move the index accordingly
head = head - sum(1 if h < head else 0 for h in self.pruned_heads)
mask[head] = 0
mask = mask.view(-1).contiguous().eq(1)
index = torch.arange(len(mask))[mask].long()
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
threshold=threshold,
)
attention_output = self.output(self_outputs[0], hidden_states, threshold=threshold)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class BertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = MaskedLinear(
config.hidden_size,
config.intermediate_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states, threshold):
hidden_states = self.dense(hidden_states, threshold=threshold)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class BertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = MaskedLinear(
config.intermediate_size,
config.hidden_size,
pruning_method=config.pruning_method,
mask_init=config.mask_init,
mask_scale=config.mask_scale,
)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor, threshold):
hidden_states = self.dense(hidden_states, threshold=threshold)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class BertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.attention = BertAttention(config)
self.is_decoder = config.is_decoder
if self.is_decoder:
self.crossattention = BertAttention(config)
self.intermediate = BertIntermediate(config)
self.output = BertOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
self_attention_outputs = self.attention(hidden_states, attention_mask, head_mask, threshold=threshold)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
if self.is_decoder and encoder_hidden_states is not None:
cross_attention_outputs = self.crossattention(
attention_output, attention_mask, head_mask, encoder_hidden_states, encoder_attention_mask
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:] # add cross attentions if we output attention weights
intermediate_output = self.intermediate(attention_output, threshold=threshold)
layer_output = self.output(intermediate_output, attention_output, threshold=threshold)
outputs = (layer_output,) + outputs
return outputs
class BertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.layer = nn.ModuleList([BertLayer(config) for _ in range(config.num_hidden_layers)])
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
all_hidden_states = ()
all_attentions = ()
for i, layer_module in enumerate(self.layer):
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states,
attention_mask,
head_mask[i],
encoder_hidden_states,
encoder_attention_mask,
threshold=threshold,
)
hidden_states = layer_outputs[0]
if self.output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if self.output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
outputs = (hidden_states,)
if self.output_hidden_states:
outputs = outputs + (all_hidden_states,)
if self.output_attentions:
outputs = outputs + (all_attentions,)
return outputs # last-layer hidden state, (all hidden states), (all attentions)
class BertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class MaskedBertPreTrainedModel(PreTrainedModel):
"""An abstract class to handle weights initialization and
a simple interface for downloading and loading pretrained models.
"""
config_class = MaskedBertConfig
load_tf_weights = load_tf_weights_in_bert
base_model_prefix = "bert"
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, (nn.Linear, nn.Embedding)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
if isinstance(module, nn.Linear) and module.bias is not None:
module.bias.data.zero_()
MASKED_BERT_START_DOCSTRING = r"""
This model is a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`_ sub-class.
Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general
usage and behavior.
Parameters:
config (:class:`~emmental.MaskedBertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the configuration.
Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model weights.
"""
MASKED_BERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`transformers.BertTokenizer`.
See :func:`transformers.PreTrainedTokenizer.encode` and
:func:`transformers.PreTrainedTokenizer.__call__` for details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices.
Mask values selected in ``[0, 1]``:
``1`` for tokens that are NOT MASKED, ``0`` for MASKED tokens.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Segment token indices to indicate first and second portions of the inputs.
Indices are selected in ``[0, 1]``: ``0`` corresponds to a `sentence A` token, ``1``
corresponds to a `sentence B` token
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings.
Selected in the range ``[0, config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules.
Mask values selected in ``[0, 1]``:
:obj:`1` indicates the head is **not masked**, :obj:`0` indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
encoder_hidden_states (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
if the model is configured as a decoder.
encoder_attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask
is used in the cross-attention if the model is configured as a decoder.
Mask values selected in ``[0, 1]``:
``1`` for tokens that are NOT MASKED, ``0`` for MASKED tokens.
"""
@add_start_docstrings(
"The bare Masked Bert Model transformer outputting raw hidden-states without any specific head on top.",
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertModel(MaskedBertPreTrainedModel):
"""
The `MaskedBertModel` class replicates the :class:`~transformers.BertModel` class
and adds specific inputs to compute the adaptive mask on the fly.
Note that we freeze the embeddings modules from their pre-trained values.
"""
def __init__(self, config):
super().__init__(config)
self.config = config
self.embeddings = BertEmbeddings(config)
self.embeddings.requires_grad_(requires_grad=False)
self.encoder = BertEncoder(config)
self.pooler = BertPooler(config)
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""Prunes heads of the model.
heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
See base class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
threshold=None,
):
r"""
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
if attention_mask.dim() == 3:
extended_attention_mask = attention_mask[:, None, :, :]
elif attention_mask.dim() == 2:
# Provided a padding mask of dimensions [batch_size, seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder:
batch_size, seq_length = input_shape
seq_ids = torch.arange(seq_length, device=device)
causal_mask = seq_ids[None, None, :].repeat(batch_size, seq_length, 1) <= seq_ids[None, :, None]
causal_mask = causal_mask.to(
attention_mask.dtype
) # causal and attention masks must have same type with pytorch version < 1.3
extended_attention_mask = causal_mask[:, None, :, :] * attention_mask[:, None, None, :]
else:
extended_attention_mask = attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for input_ids (shape {}) or attention_mask (shape {})".format(
input_shape, attention_mask.shape
)
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = extended_attention_mask.to(dtype=next(self.parameters()).dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
if encoder_attention_mask.dim() == 3:
encoder_extended_attention_mask = encoder_attention_mask[:, None, :, :]
elif encoder_attention_mask.dim() == 2:
encoder_extended_attention_mask = encoder_attention_mask[:, None, None, :]
else:
raise ValueError(
"Wrong shape for encoder_hidden_shape (shape {}) or encoder_attention_mask (shape {})".format(
encoder_hidden_shape, encoder_attention_mask.shape
)
)
encoder_extended_attention_mask = encoder_extended_attention_mask.to(
dtype=next(self.parameters()).dtype
) # fp16 compatibility
encoder_extended_attention_mask = (1.0 - encoder_extended_attention_mask) * -10000.0
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if head_mask is not None:
if head_mask.dim() == 1:
head_mask = head_mask.unsqueeze(0).unsqueeze(0).unsqueeze(-1).unsqueeze(-1)
head_mask = head_mask.expand(self.config.num_hidden_layers, -1, -1, -1, -1)
elif head_mask.dim() == 2:
head_mask = (
head_mask.unsqueeze(1).unsqueeze(-1).unsqueeze(-1)
) # We can specify head_mask for each layer
head_mask = head_mask.to(
dtype=next(self.parameters()).dtype
) # switch to float if need + fp16 compatibility
else:
head_mask = [None] * self.config.num_hidden_layers
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
threshold=threshold,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output)
outputs = (
sequence_output,
pooled_output,
) + encoder_outputs[
1:
] # add hidden_states and attentions if they are here
return outputs # sequence_output, pooled_output, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model transformer with a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForSequenceClassification(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = MaskedBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, self.config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
threshold=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
outputs = (loss,) + outputs
return outputs # (loss), logits, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model with a multiple choice classification head on top (a linear layer on top of
the pooled output and a softmax) e.g. for RocStories/SWAG tasks. """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForMultipleChoice(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.bert = MaskedBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
threshold=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss.
Indices should be in ``[0, ..., num_choices]`` where `num_choices` is the size of the second dimension
of the input tensors. (see `input_ids` above)
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape `(1,)`, `optional`, returned when :obj:`labels` is provided):
Classification loss.
classification_scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_choices)`):
`num_choices` is the second dimension of the input tensors. (see `input_ids` above).
Classification scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
num_choices = input_ids.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1))
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
outputs = (reshaped_logits,) + outputs[2:] # add hidden states and attention if they are here
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
outputs = (loss,) + outputs
return outputs # (loss), reshaped_logits, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model with a token classification head on top (a linear layer on top of
the hidden-states output) e.g. for Named-Entity-Recognition (NER) tasks. """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForTokenClassification(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = MaskedBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
threshold=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss.
Indices should be in ``[0, ..., config.num_labels - 1]``.
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when ``labels`` is provided) :
Classification loss.
scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, config.num_labels)`)
Classification scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
outputs = (logits,) + outputs[2:] # add hidden states and attention if they are here
if labels is not None:
loss_fct = CrossEntropyLoss()
# Only keep active parts of the loss
if attention_mask is not None:
active_loss = attention_mask.view(-1) == 1
active_logits = logits.view(-1, self.num_labels)
active_labels = torch.where(
active_loss, labels.view(-1), torch.tensor(loss_fct.ignore_index).type_as(labels)
)
loss = loss_fct(active_logits, active_labels)
else:
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
outputs = (loss,) + outputs
return outputs # (loss), scores, (hidden_states), (attentions)
@add_start_docstrings(
"""Masked Bert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`). """,
MASKED_BERT_START_DOCSTRING,
)
class MaskedBertForQuestionAnswering(MaskedBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = MaskedBertModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(MASKED_BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
start_positions=None,
end_positions=None,
threshold=None,
):
r"""
start_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`).
Position outside of the sequence are not taken into account for computing the loss.
end_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`).
Position outside of the sequence are not taken into account for computing the loss.
threshold (:obj:`float`):
Threshold value (see :class:`~emmental.MaskedLinear`).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~emmental.MaskedBertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`labels` is provided):
Total span extraction loss is the sum of a Cross-Entropy for the start and end positions.
start_scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length,)`):
Span-start scores (before SoftMax).
end_scores (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length,)`):
Span-end scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
outputs = self.bert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
threshold=threshold,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
outputs = (
start_logits,
end_logits,
) + outputs[2:]
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions.clamp_(0, ignored_index)
end_positions.clamp_(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
outputs = (total_loss,) + outputs
return outputs # (loss), start_logits, end_logits, (hidden_states), (attentions)
| transformers-main | examples/research_projects/movement-pruning/emmental/modeling_bert_masked.py |
# coding=utf-8
# Copyright 2020-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Masked Linear module: A fully connected layer that computes an adaptive binary mask on the fly.
The mask (binary or not) is computed at each forward pass and multiplied against
the weight matrix to prune a portion of the weights.
The pruned weight matrix is then multiplied against the inputs (and if necessary, the bias is added).
"""
import math
import torch
from torch import nn
from torch.nn import init
from .binarizer import MagnitudeBinarizer, ThresholdBinarizer, TopKBinarizer
class MaskedLinear(nn.Linear):
"""
Fully Connected layer with on the fly adaptive mask.
If needed, a score matrix is created to store the importance of each associated weight.
"""
def __init__(
self,
in_features: int,
out_features: int,
bias: bool = True,
mask_init: str = "constant",
mask_scale: float = 0.0,
pruning_method: str = "topK",
):
"""
Args:
in_features (`int`)
Size of each input sample
out_features (`int`)
Size of each output sample
bias (`bool`)
If set to ``False``, the layer will not learn an additive bias.
Default: ``True``
mask_init (`str`)
The initialization method for the score matrix if a score matrix is needed.
Choices: ["constant", "uniform", "kaiming"]
Default: ``constant``
mask_scale (`float`)
The initialization parameter for the chosen initialization method `mask_init`.
Default: ``0.``
pruning_method (`str`)
Method to compute the mask.
Choices: ["topK", "threshold", "sigmoied_threshold", "magnitude", "l0"]
Default: ``topK``
"""
super(MaskedLinear, self).__init__(in_features=in_features, out_features=out_features, bias=bias)
assert pruning_method in ["topK", "threshold", "sigmoied_threshold", "magnitude", "l0"]
self.pruning_method = pruning_method
if self.pruning_method in ["topK", "threshold", "sigmoied_threshold", "l0"]:
self.mask_scale = mask_scale
self.mask_init = mask_init
self.mask_scores = nn.Parameter(torch.empty(self.weight.size()))
self.init_mask()
def init_mask(self):
if self.mask_init == "constant":
init.constant_(self.mask_scores, val=self.mask_scale)
elif self.mask_init == "uniform":
init.uniform_(self.mask_scores, a=-self.mask_scale, b=self.mask_scale)
elif self.mask_init == "kaiming":
init.kaiming_uniform_(self.mask_scores, a=math.sqrt(5))
def forward(self, input: torch.tensor, threshold: float):
# Get the mask
if self.pruning_method == "topK":
mask = TopKBinarizer.apply(self.mask_scores, threshold)
elif self.pruning_method in ["threshold", "sigmoied_threshold"]:
sig = "sigmoied" in self.pruning_method
mask = ThresholdBinarizer.apply(self.mask_scores, threshold, sig)
elif self.pruning_method == "magnitude":
mask = MagnitudeBinarizer.apply(self.weight, threshold)
elif self.pruning_method == "l0":
l, r, b = -0.1, 1.1, 2 / 3
if self.training:
u = torch.zeros_like(self.mask_scores).uniform_().clamp(0.0001, 0.9999)
s = torch.sigmoid((u.log() - (1 - u).log() + self.mask_scores) / b)
else:
s = torch.sigmoid(self.mask_scores)
s_bar = s * (r - l) + l
mask = s_bar.clamp(min=0.0, max=1.0)
# Mask weights with computed mask
weight_thresholded = mask * self.weight
# Compute output (linear layer) with masked weights
return nn.functional.linear(input, weight_thresholded, self.bias)
| transformers-main | examples/research_projects/movement-pruning/emmental/modules/masked_nn.py |
from .binarizer import MagnitudeBinarizer, ThresholdBinarizer, TopKBinarizer
from .masked_nn import MaskedLinear
| transformers-main | examples/research_projects/movement-pruning/emmental/modules/__init__.py |
# coding=utf-8
# Copyright 2020-present, AllenAI Authors, University of Illinois Urbana-Champaign,
# Intel Nervana Systems and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Binarizers take a (real value) matrix as input and produce a binary (values in {0,1}) mask of the same shape.
"""
import torch
from torch import autograd
class ThresholdBinarizer(autograd.Function):
"""
Thresholdd binarizer.
Computes a binary mask M from a real value matrix S such that `M_{i,j} = 1` if and only if `S_{i,j} > \tau`
where `\tau` is a real value threshold.
Implementation is inspired from:
https://github.com/arunmallya/piggyback
Piggyback: Adapting a Single Network to Multiple Tasks by Learning to Mask Weights
Arun Mallya, Dillon Davis, Svetlana Lazebnik
"""
@staticmethod
def forward(ctx, inputs: torch.tensor, threshold: float, sigmoid: bool):
"""
Args:
inputs (`torch.FloatTensor`)
The input matrix from which the binarizer computes the binary mask.
threshold (`float`)
The threshold value (in R).
sigmoid (`bool`)
If set to ``True``, we apply the sigmoid function to the `inputs` matrix before comparing to `threshold`.
In this case, `threshold` should be a value between 0 and 1.
Returns:
mask (`torch.FloatTensor`)
Binary matrix of the same size as `inputs` acting as a mask (1 - the associated weight is
retained, 0 - the associated weight is pruned).
"""
nb_elems = inputs.numel()
nb_min = int(0.005 * nb_elems) + 1
if sigmoid:
mask = (torch.sigmoid(inputs) > threshold).type(inputs.type())
else:
mask = (inputs > threshold).type(inputs.type())
if mask.sum() < nb_min:
# We limit the pruning so that at least 0.5% (half a percent) of the weights are remaining
k_threshold = inputs.flatten().kthvalue(max(nb_elems - nb_min, 1)).values
mask = (inputs > k_threshold).type(inputs.type())
return mask
@staticmethod
def backward(ctx, gradOutput):
return gradOutput, None, None
class TopKBinarizer(autograd.Function):
"""
Top-k Binarizer.
Computes a binary mask M from a real value matrix S such that `M_{i,j} = 1` if and only if `S_{i,j}`
is among the k% highest values of S.
Implementation is inspired from:
https://github.com/allenai/hidden-networks
What's hidden in a randomly weighted neural network?
Vivek Ramanujan*, Mitchell Wortsman*, Aniruddha Kembhavi, Ali Farhadi, Mohammad Rastegari
"""
@staticmethod
def forward(ctx, inputs: torch.tensor, threshold: float):
"""
Args:
inputs (`torch.FloatTensor`)
The input matrix from which the binarizer computes the binary mask.
threshold (`float`)
The percentage of weights to keep (the rest is pruned).
`threshold` is a float between 0 and 1.
Returns:
mask (`torch.FloatTensor`)
Binary matrix of the same size as `inputs` acting as a mask (1 - the associated weight is
retained, 0 - the associated weight is pruned).
"""
# Get the subnetwork by sorting the inputs and using the top threshold %
mask = inputs.clone()
_, idx = inputs.flatten().sort(descending=True)
j = int(threshold * inputs.numel())
# flat_out and mask access the same memory.
flat_out = mask.flatten()
flat_out[idx[j:]] = 0
flat_out[idx[:j]] = 1
return mask
@staticmethod
def backward(ctx, gradOutput):
return gradOutput, None
class MagnitudeBinarizer(object):
"""
Magnitude Binarizer.
Computes a binary mask M from a real value matrix S such that `M_{i,j} = 1` if and only if `S_{i,j}`
is among the k% highest values of |S| (absolute value).
Implementation is inspired from https://github.com/NervanaSystems/distiller/blob/2291fdcc2ea642a98d4e20629acb5a9e2e04b4e6/distiller/pruning/automated_gradual_pruner.py#L24
"""
@staticmethod
def apply(inputs: torch.tensor, threshold: float):
"""
Args:
inputs (`torch.FloatTensor`)
The input matrix from which the binarizer computes the binary mask.
This input marix is typically the weight matrix.
threshold (`float`)
The percentage of weights to keep (the rest is pruned).
`threshold` is a float between 0 and 1.
Returns:
mask (`torch.FloatTensor`)
Binary matrix of the same size as `inputs` acting as a mask (1 - the associated weight is
retained, 0 - the associated weight is pruned).
"""
# Get the subnetwork by sorting the inputs and using the top threshold %
mask = inputs.clone()
_, idx = inputs.abs().flatten().sort(descending=True)
j = int(threshold * inputs.numel())
# flat_out and mask access the same memory.
flat_out = mask.flatten()
flat_out[idx[j:]] = 0
flat_out[idx[:j]] = 1
return mask
| transformers-main | examples/research_projects/movement-pruning/emmental/modules/binarizer.py |
"""Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import copy
import json
import logging
import multiprocessing
import os
import random
import shutil
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
import torch.distributed as dist
from datasets import concatenate_datasets, load_from_disk
from torch.utils.data import DataLoader
from transformers import (
AutoConfig,
AutoTokenizer,
BartForConditionalGeneration,
BatchEncoding,
DPRConfig,
DPRContextEncoder,
DPRContextEncoderTokenizerFast,
RagConfig,
RagSequenceForGeneration,
RagTokenForGeneration,
RagTokenizer,
T5ForConditionalGeneration,
)
from transformers import logging as transformers_logging
from transformers.integrations import is_ray_available
if is_ray_available():
import ray
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever
from glob import glob
from callbacks_rag import Seq2SeqLoggingCallback, get_checkpoint_callback, get_early_stopping_callback
from kb_encode_utils import add_index, embed_update
from lightning_base import BaseTransformer, add_generic_args, generic_train
from pynvml import nvmlDeviceGetCount, nvmlDeviceGetHandleByIndex, nvmlDeviceGetMemoryInfo, nvmlInit
from utils_rag import (
Seq2SeqDataset,
calculate_exact_match,
get_git_info,
is_rag_model,
lmap,
pickle_save,
save_git_info,
save_json,
set_extra_model_params,
)
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
transformers_logging.set_verbosity_info()
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
isEmUpdateBusy = False
isAddIndexBusy = False
processes = []
threadHandle_index = None
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
class GenerativeQAModule(BaseTransformer):
mode = "generative_qa"
loss_names = ["loss"]
metric_names = ["em"]
val_metric = "em"
def __init__(self, hparams, **kwargs):
# when loading from a pytorch lightning checkpoint, hparams are passed as dict
if isinstance(hparams, dict):
hparams = AttrDict(hparams)
if hparams.model_type == "rag_sequence":
self.model_class = RagSequenceForGeneration
elif hparams.model_type == "rag_token":
self.model_class = RagTokenForGeneration
elif hparams.model_type == "bart":
self.model_class = BartForConditionalGeneration
else:
self.model_class = T5ForConditionalGeneration
self.is_rag_model = is_rag_model(hparams.model_type)
config_class = RagConfig if self.is_rag_model else AutoConfig
config = config_class.from_pretrained(hparams.model_name_or_path)
# set retriever parameters
config.index_name = hparams.index_name or config.index_name
config.passages_path = hparams.passages_path or config.passages_path
config.index_path = hparams.index_path or config.index_path
config.use_dummy_dataset = hparams.use_dummy_dataset
# set extra_model_params for generator configs and load_model
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "attention_dropout", "dropout")
if self.is_rag_model:
if hparams.prefix is not None:
config.generator.prefix = hparams.prefix
config.label_smoothing = hparams.label_smoothing
hparams, config.generator = set_extra_model_params(extra_model_params, hparams, config.generator)
if hparams.distributed_retriever == "ray":
# The Ray retriever needs the handles to the retriever actors.
retriever = RagRayDistributedRetriever.from_pretrained(
hparams.model_name_or_path, hparams.actor_handles, config=config
)
if hparams.end2end:
ctx_encoder_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(
"facebook/dpr-ctx_encoder-multiset-base"
)
retriever.set_ctx_encoder_tokenizer(ctx_encoder_tokenizer)
else:
logger.info("please use RAY as the distributed retrieval method")
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config, retriever=retriever)
if hparams.end2end:
ctx_encoder = DPRContextEncoder.from_pretrained(hparams.context_encoder_name)
model.set_context_encoder_for_training(ctx_encoder)
prefix = config.question_encoder.prefix
else:
if hparams.prefix is not None:
config.prefix = hparams.prefix
hparams, config = set_extra_model_params(extra_model_params, hparams, config)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config)
prefix = config.prefix
tokenizer = (
RagTokenizer.from_pretrained(hparams.model_name_or_path)
if self.is_rag_model
else AutoTokenizer.from_pretrained(hparams.model_name_or_path)
)
self.config_dpr = DPRConfig.from_pretrained(hparams.context_encoder_name)
self.custom_config = hparams
self.context_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(hparams.context_encoder_name)
super().__init__(hparams, config=config, tokenizer=tokenizer, model=model)
save_git_info(self.hparams.output_dir)
self.output_dir = Path(self.hparams.output_dir)
self.dpr_ctx_check_dir = str(Path(self.hparams.output_dir)) + "/dpr_ctx_checkpoint"
self.metrics_save_path = Path(self.output_dir) / "metrics.json"
self.hparams_save_path = Path(self.output_dir) / "hparams.pkl"
pickle_save(self.hparams, self.hparams_save_path)
self.step_count = 0
self.metrics = defaultdict(list)
self.dataset_kwargs: dict = {
"data_dir": self.hparams.data_dir,
"max_source_length": self.hparams.max_source_length,
"prefix": prefix or "",
}
n_observations_per_split = {
"train": self.hparams.n_train,
"val": self.hparams.n_val,
"test": self.hparams.n_test,
}
self.n_obs = {k: v if v >= 0 else None for k, v in n_observations_per_split.items()}
self.target_lens = {
"train": self.hparams.max_target_length,
"val": self.hparams.val_max_target_length,
"test": self.hparams.test_max_target_length,
}
assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
self.hparams.git_sha = get_git_info()["repo_sha"]
self.num_workers = hparams.num_workers
self.distributed_port = self.hparams.distributed_port
# For single GPU training, init_ddp_connection is not called.
# So we need to initialize the retrievers here.
if hparams.gpus <= 1:
if hparams.distributed_retriever == "ray":
self.model.retriever.init_retrieval()
else:
logger.info("please use RAY as the distributed retrieval method")
self.distributed_retriever = hparams.distributed_retriever
def forward(self, input_ids, **kwargs):
return self.model(input_ids, **kwargs)
def ids_to_clean_text(self, generated_ids: List[int]):
gen_text = self.tokenizer.batch_decode(
generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
return lmap(str.strip, gen_text)
def _step(self, batch: dict) -> Tuple:
source_ids, source_mask, target_ids = batch["input_ids"], batch["attention_mask"], batch["decoder_input_ids"]
rag_kwargs = {}
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(target_ids)
lm_labels = target_ids
elif isinstance(self.model, BartForConditionalGeneration):
decoder_input_ids = target_ids[:, :-1].contiguous()
lm_labels = target_ids[:, 1:].clone()
else:
assert self.is_rag_model
generator = self.model.rag.generator
if isinstance(generator, T5ForConditionalGeneration):
decoder_start_token_id = generator.config.decoder_start_token_id
decoder_input_ids = (
torch.cat(
[torch.tensor([[decoder_start_token_id]] * target_ids.shape[0]).to(target_ids), target_ids],
dim=1,
)
if target_ids.shape[0] < self.target_lens["train"]
else generator._shift_right(target_ids)
)
elif isinstance(generator, BartForConditionalGeneration):
decoder_input_ids = target_ids
lm_labels = decoder_input_ids
rag_kwargs["reduce_loss"] = True
assert decoder_input_ids is not None
outputs = self(
source_ids,
attention_mask=source_mask,
decoder_input_ids=decoder_input_ids,
use_cache=False,
labels=lm_labels,
**rag_kwargs,
)
loss = outputs["loss"]
return (loss,)
@property
def pad(self) -> int:
raise NotImplementedError("pad not implemented")
def training_step(self, batch, batch_idx) -> Dict:
global isEmUpdateBusy # use to check whether the entire embedding update process is finished or not
global isAddIndexBusy # use to check whether the entire indexing process is finished or not
global processes # use to keep threads embedding update processes
global threadHandle_index # use to keep thread in embedding indexing processes
if (self.trainer.global_rank == 0) and (self.custom_config.end2end):
if (not batch_idx == 0) and (batch_idx % self.custom_config.indexing_freq == 0):
free_gpu_list = []
nvmlInit()
deviceCount = nvmlDeviceGetCount()
my_list = json.loads(self.custom_config.gpu_order)
for i in range(deviceCount):
handle = nvmlDeviceGetHandleByIndex(i)
info = nvmlDeviceGetMemoryInfo(handle)
if info.used / 1e6 < 15:
position = my_list.index(i)
free_gpu_list.append("cuda:" + str(position))
if len(free_gpu_list) >= self.custom_config.index_gpus:
has_free_gpus = True
else:
has_free_gpus = False
if (not isEmUpdateBusy) and has_free_gpus:
model_copy = type(self.model.rag.ctx_encoder)(
self.config_dpr
) # get a new instance #this will be load in the CPU
model_copy.load_state_dict(self.model.rag.ctx_encoder.state_dict()) # copy weights
processes = []
if len(free_gpu_list) > self.custom_config.index_gpus:
cuda_devices = random.sample(free_gpu_list, self.custom_config.index_gpus)
else:
cuda_devices = free_gpu_list
num_processes = len(cuda_devices)
for rank in range(num_processes):
logger.info("Iniitializing embedding calculation process rank{}".format(rank))
device = cuda_devices[rank]
p = multiprocessing.Process(
target=embed_update,
args=(
copy.deepcopy(model_copy),
num_processes,
device,
rank,
self.custom_config.shard_dir,
self.custom_config.csv_path,
),
)
processes.append(p)
for p in processes:
p.start()
isEmUpdateBusy = True
if isEmUpdateBusy and (not isAddIndexBusy):
index_process_list = [processes[k].is_alive() for k in range(self.custom_config.index_gpus)]
if (
sum(index_process_list) == 0
): # If entire list is false, we can say all embedding calculation process has finished
logger.info("Start adding the index")
threadHandle_index = multiprocessing.Process(
target=add_index,
args=(
self.custom_config.shard_dir,
self.config.index_path,
),
)
threadHandle_index.start()
isAddIndexBusy = True
# check when index building has started
if isAddIndexBusy:
# check still the index_building process is happening
if not threadHandle_index.is_alive():
logger.info("Merging the dataset shards")
saved_dataset_shards = []
for address in glob(str(self.custom_config.shard_dir) + "/*/"):
saved_dataset_shards.append(load_from_disk(address))
concat = concatenate_datasets(saved_dataset_shards)
concat.save_to_disk(self.config.passages_path) # here we update the main passage file on the disk
logger.info("done updating the dataset")
# To Do (@Aaron) : Useful in the future dynamic memory implementation.
# if you load the index from the disk make sure to update the index file here, otherwise it is ok to update the index file from the worker.
# logger.info("then updating the index")
# shutil.copy(self.custom_config.temp_index, self.config.idex_path)
logger.info("Loading new passages and iniitalzing new index")
self.trainer.model.module.module.model.rag.retriever.re_load()
self.trainer.model.module.module.model.rag.retriever.init_retrieval()
isEmUpdateBusy = False
isAddIndexBusy = False
self.trainer.strategy.barrier("barrier")
loss_tensors = self._step(batch)
logs = dict(zip(self.loss_names, loss_tensors))
# tokens per batch
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
logs["tpb"] = (
batch["input_ids"].ne(src_pad_token_id).sum() + batch["decoder_input_ids"].ne(tgt_pad_token_id).sum()
)
self.log("loss", loss_tensors[0])
return loss_tensors[0]
def validation_step(self, batch, batch_idx) -> Dict:
return self._generative_step(batch)
def validation_epoch_end(self, outputs, prefix="val") -> Dict:
self.step_count += 1
losses = {k: torch.stack([x[k] for x in outputs]).mean() for k in self.loss_names}
loss = losses["loss"]
gen_metrics = {
k: np.array([x[k] for x in outputs]).mean() for k in self.metric_names + ["gen_time", "gen_len"]
}
metrics_tensor: torch.FloatTensor = torch.tensor(gen_metrics[self.val_metric]).type_as(loss)
gen_metrics.update({k: v.item() for k, v in losses.items()})
# fix for https://github.com/PyTorchLightning/pytorch-lightning/issues/2424
if dist.is_initialized():
dist.all_reduce(metrics_tensor, op=dist.ReduceOp.SUM)
metrics_tensor = metrics_tensor / dist.get_world_size()
gen_metrics.update({self.val_metric: metrics_tensor.item()})
losses.update(gen_metrics)
metrics = {f"{prefix}_avg_{k}": x for k, x in losses.items()}
metrics["step_count"] = self.step_count
self.save_metrics(metrics, prefix) # writes to self.metrics_save_path
log_dict = {
f"{prefix}_avg_em": metrics[f"{prefix}_avg_em"],
"step_count": metrics["step_count"],
f"{prefix}_avg_loss": metrics[f"{prefix}_avg_loss"],
f"{prefix}_loss": loss,
f"{prefix}_em": metrics_tensor,
}
self.log_dict(log_dict)
def save_metrics(self, latest_metrics, type_path) -> None:
self.metrics[type_path].append(latest_metrics)
save_json(self.metrics, self.metrics_save_path)
def calc_generative_metrics(self, preds, target) -> Dict:
return calculate_exact_match(preds, target)
def _generative_step(self, batch: dict) -> dict:
start_time = time.time()
batch = BatchEncoding(batch).to(device=self.model.device)
generated_ids = self.model.generate(
batch["input_ids"],
attention_mask=batch["attention_mask"],
do_deduplication=False, # rag specific parameter
use_cache=True,
min_length=1,
max_length=self.target_lens["val"],
)
gen_time = (time.time() - start_time) / batch["input_ids"].shape[0]
preds: List[str] = self.ids_to_clean_text(generated_ids)
target: List[str] = self.ids_to_clean_text(batch["decoder_input_ids"])
# print(preds,target)
loss_tensors = self._step(batch)
base_metrics = dict(zip(self.loss_names, loss_tensors))
gen_metrics: Dict = self.calc_generative_metrics(preds, target)
summ_len = np.mean(lmap(len, generated_ids))
base_metrics.update(gen_time=gen_time, gen_len=summ_len, preds=preds, target=target, **gen_metrics)
return base_metrics
def test_step(self, batch, batch_idx):
return self._generative_step(batch)
def test_epoch_end(self, outputs):
return self.validation_epoch_end(outputs, prefix="test")
def get_dataset(self, type_path) -> Seq2SeqDataset:
n_obs = self.n_obs[type_path]
max_target_length = self.target_lens[type_path]
dataset = Seq2SeqDataset(
self.tokenizer,
type_path=type_path,
n_obs=n_obs,
max_target_length=max_target_length,
**self.dataset_kwargs,
)
return dataset
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
dataset = self.get_dataset(type_path)
dataloader = DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=shuffle,
num_workers=self.num_workers,
)
return dataloader
def train_dataloader(self) -> DataLoader:
dataloader = self.get_dataloader("train", batch_size=self.hparams.train_batch_size, shuffle=True)
return dataloader
def val_dataloader(self) -> DataLoader:
return self.get_dataloader("val", batch_size=self.hparams.eval_batch_size)
def test_dataloader(self) -> DataLoader:
return self.get_dataloader("test", batch_size=self.hparams.eval_batch_size)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("checkpoint{}".format(self.step_count))
self.model.config.save_step = self.step_count
# self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
if self.custom_config.end2end:
modified_state_dict = self.model.state_dict()
for key in self.model.state_dict().keys():
if key.split(".")[1] == "ctx_encoder":
del modified_state_dict[key]
self.model.save_pretrained(save_directory=save_path, state_dict=modified_state_dict)
save_path_dpr = os.path.join(self.dpr_ctx_check_dir, "checkpoint{}".format(self.step_count))
self.model.rag.ctx_encoder.save_pretrained(save_path_dpr)
self.context_tokenizer.save_pretrained(save_path_dpr)
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
add_generic_args(parser, root_dir)
parser.add_argument(
"--max_source_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--val_max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--test_max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_val", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_test", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--label_smoothing", type=float, default=0.0, required=False)
parser.add_argument(
"--prefix",
type=str,
default=None,
help="Prefix added at the beginning of each text, typically used with T5-based models.",
)
parser.add_argument(
"--early_stopping_patience",
type=int,
default=-1,
required=False,
help=(
"-1 means never early stop. early_stopping_patience is measured in validation checks, not epochs. So"
" val_check_interval will effect it."
),
)
parser.add_argument(
"--distributed-port", type=int, default=-1, required=False, help="Port number for distributed training."
)
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart", "t5"],
type=str,
help=(
"RAG model type: sequence or token, if none specified, the type is inferred from the"
" model_name_or_path"
),
)
parser.add_argument(
"--context_encoder_name",
default="facebook/dpr-ctx_encoder-multiset-base",
type=str,
help="Name of the pre-trained context encoder checkpoint from the DPR",
)
parser.add_argument(
"--csv_path",
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset.csv"),
type=str,
help="path of the raw KB csv",
)
parser.add_argument("--end2end", action="store_true", help="whether to train the system end2end or not")
parser.add_argument("--index_gpus", type=int, help="how many GPUs used in re-encoding process")
parser.add_argument(
"--shard_dir",
type=str,
default=str(Path(__file__).parent / "test_run" / "kb-shards"),
help="directory used to keep temporary shards during the re-encode process",
)
parser.add_argument(
"--gpu_order",
type=str,
help=(
"order of the GPU used during the fine-tuning. Used to finding free GPUs during the re-encode"
" process. I do not have many GPUs :)"
),
)
parser.add_argument("--indexing_freq", type=int, help="frequency of re-encode process")
return parser
@staticmethod
def add_retriever_specific_args(parser):
parser.add_argument(
"--index_name",
type=str,
default=None,
help=(
"Name of the index to use: 'hf' for a canonical dataset from the datasets library (default), 'custom'"
" for a local index, or 'legacy' for the orignal one)"
),
)
parser.add_argument(
"--passages_path",
type=str,
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset"),
help=(
"Path to the dataset of passages for custom index. More info about custom indexes in the RagRetriever"
" documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
parser.add_argument(
"--index_path",
type=str,
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset_hnsw_index.faiss"),
help=(
"Path to the faiss index for custom index. More info about custom indexes in the RagRetriever"
" documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
parser.add_argument(
"--distributed_retriever",
choices=["ray", "pytorch"],
type=str,
default="ray",
help=(
"What implementation to use for distributed retriever? If "
"pytorch is selected, the index is loaded on training "
"worker 0, and torch.distributed is used to handle "
"communication between training worker 0, and the other "
"training workers. If ray is selected, the Ray library is "
"used to create load the index on separate processes, "
"and Ray handles the communication between the training "
"workers and the retrieval actors."
),
)
parser.add_argument(
"--use_dummy_dataset",
type=bool,
default=False,
help=(
"Whether to use the dummy version of the dataset index. More info about custom indexes in the"
" RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
return parser
@staticmethod
def add_ray_specific_args(parser):
# Ray cluster address.
parser.add_argument(
"--ray-address",
default="auto",
type=str,
help=(
"The address of the Ray cluster to connect to. If not "
"specified, Ray will attempt to automatically detect the "
"cluster. Has no effect if pytorch is used as the distributed "
"retriever."
),
)
parser.add_argument(
"--num_retrieval_workers",
type=int,
default=1,
help=(
"The number of retrieval actors to use when Ray is selected"
"for the distributed retriever. Has no effect when "
"distributed_retriever is set to pytorch."
),
)
return parser
def main(args=None, model=None) -> GenerativeQAModule:
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
args = args or parser.parse_args()
Path(args.output_dir).mkdir(exist_ok=True)
Path(args.output_dir + "/dpr_ctx_checkpoint").mkdir(
exist_ok=True
) # save dpr_context encoder seprately for the future use
print(args.shard_dir)
if os.path.exists(args.shard_dir): # we do not need previous kb shards used in dataset re-conding and re-indexing
shutil.rmtree(args.shard_dir)
Path(args.shard_dir).mkdir(exist_ok=True)
if os.path.exists(
args.cache_dir
): # we do not need previous cache files used in dataset re-conding and re-indexing
shutil.rmtree(args.cache_dir)
Path(args.cache_dir).mkdir(exist_ok=True)
named_actors = []
if args.distributed_retriever == "ray" and args.gpus > 1:
if not is_ray_available():
raise RuntimeError("Please install Ray to use the Ray distributed retriever.")
# Connect to an existing Ray cluster.
try:
ray.init(address=args.ray_address, namespace="rag")
except (ConnectionError, ValueError):
logger.warning(
"Connection to Ray cluster failed. Make sure a Ray"
"cluster is running by either using Ray's cluster "
"launcher (`ray up`) or by manually starting Ray on "
"each node via `ray start --head` for the head node "
"and `ray start --address='<ip address>:6379'` for "
"additional nodes. See "
"https://docs.ray.io/en/master/cluster/index.html "
"for more info."
)
raise
# Create Ray actors only for rank 0.
if ("LOCAL_RANK" not in os.environ or os.environ["LOCAL_RANK"] == 0) and (
"NODE_RANK" not in os.environ or os.environ["NODE_RANK"] == 0
):
remote_cls = ray.remote(RayRetriever)
named_actors = [
remote_cls.options(name="retrieval_worker_{}".format(i)).remote()
for i in range(args.num_retrieval_workers)
]
else:
logger.info(
"Getting named actors for NODE_RANK {}, LOCAL_RANK {}".format(
os.environ["NODE_RANK"], os.environ["LOCAL_RANK"]
)
)
named_actors = [ray.get_actor("retrieval_worker_{}".format(i)) for i in range(args.num_retrieval_workers)]
args.actor_handles = named_actors
assert args.actor_handles == named_actors
if model is None:
model: GenerativeQAModule = GenerativeQAModule(args)
dataset = Path(args.data_dir).name
if (
args.logger_name == "default"
or args.fast_dev_run
or str(args.output_dir).startswith("/tmp")
or str(args.output_dir).startswith("/var")
):
training_logger = True # don't pollute wandb logs unnecessarily
elif args.logger_name == "wandb":
from pytorch_lightning.loggers import WandbLogger
project = os.environ.get("WANDB_PROJECT", dataset)
training_logger = WandbLogger(name=model.output_dir.name, project=project)
elif args.logger_name == "wandb_shared":
from pytorch_lightning.loggers import WandbLogger
training_logger = WandbLogger(name=model.output_dir.name, project=f"hf_{dataset}")
es_callback = (
get_early_stopping_callback(model.val_metric, args.early_stopping_patience)
if args.early_stopping_patience >= 0
else False
)
trainer: pl.Trainer = generic_train(
model,
args,
logging_callback=Seq2SeqLoggingCallback(),
checkpoint_callback=get_checkpoint_callback(args.output_dir, model.val_metric),
early_stopping_callback=es_callback,
logger=training_logger,
profiler=pl.profiler.AdvancedProfiler() if args.profile else None,
)
pickle_save(model.hparams, model.output_dir / "hparams.pkl")
if not args.do_predict:
return model
# test() without a model tests using the best checkpoint automatically
trainer.test()
return model
if __name__ == "__main__":
multiprocessing.set_start_method("spawn")
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
parser = GenerativeQAModule.add_ray_specific_args(parser)
# Pytorch Lightning Profiler
parser.add_argument(
"--profile",
action="store_true",
help="If True, use pytorch_lightning.profiler.AdvancedProfiler to profile the Trainer.",
)
args = parser.parse_args()
main(args)
| transformers-main | examples/research_projects/rag-end2end-retriever/finetune_rag.py |
import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transformers import BartTokenizer, RagTokenizer, T5Tokenizer
def encode_line(tokenizer, line, max_length, padding_side, pad_to_max_length=True, return_tensors="pt"):
extra_kw = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) and not line.startswith(" ") else {}
tokenizer.padding_side = padding_side
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
add_special_tokens=True,
**extra_kw,
)
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class Seq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
src_lang=None,
tgt_lang=None,
prefix="",
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.src_lens = self.get_char_lens(self.src_file)
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.src_lang = src_lang
self.tgt_lang = tgt_lang
def __len__(self):
return len(self.src_lens)
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
# Need to add eos token manually for T5
if isinstance(self.tokenizer, T5Tokenizer):
source_line += self.tokenizer.eos_token
tgt_line += self.tokenizer.eos_token
# Pad source and target to the right
source_tokenizer = (
self.tokenizer.question_encoder if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
)
target_tokenizer = self.tokenizer.generator if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
source_inputs = encode_line(source_tokenizer, source_line, self.max_source_length, "right")
target_inputs = encode_line(target_tokenizer, tgt_line, self.max_target_length, "right")
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"decoder_input_ids": target_ids,
}
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["decoder_input_ids"] for x in batch])
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
y = trim_batch(target_ids, tgt_pad_token_id)
source_ids, source_mask = trim_batch(input_ids, src_pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"decoder_input_ids": y,
}
return batch
logger = getLogger(__name__)
def flatten_list(summary_ids: List[List]):
return list(itertools.chain.from_iterable(summary_ids))
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def normalize_answer(s):
"""Lower text and remove punctuation, articles and extra whitespace."""
def remove_articles(text):
return re.sub(r"\b(a|an|the)\b", " ", text)
def white_space_fix(text):
return " ".join(text.split())
def remove_punc(text):
exclude = set(string.punctuation)
return "".join(ch for ch in text if ch not in exclude)
def lower(text):
return text.lower()
return white_space_fix(remove_articles(remove_punc(lower(s))))
def f1_score(prediction, ground_truth):
prediction_tokens = normalize_answer(prediction).split()
ground_truth_tokens = normalize_answer(ground_truth).split()
common = Counter(prediction_tokens) & Counter(ground_truth_tokens)
num_same = sum(common.values())
if num_same == 0:
return 0
precision = 1.0 * num_same / len(prediction_tokens)
recall = 1.0 * num_same / len(ground_truth_tokens)
f1 = (2 * precision * recall) / (precision + recall)
return f1
def exact_match_score(prediction, ground_truth):
return normalize_answer(prediction) == normalize_answer(ground_truth)
def calculate_exact_match(output_lns: List[str], reference_lns: List[str]) -> Dict:
assert len(output_lns) == len(reference_lns)
em = 0
for hypo, pred in zip(output_lns, reference_lns):
em += exact_match_score(hypo, pred)
if len(output_lns) > 0:
em /= len(output_lns)
return {"em": em}
def is_rag_model(model_prefix):
return model_prefix.startswith("rag")
def set_extra_model_params(extra_params, hparams, config):
equivalent_param = {p: p for p in extra_params}
# T5 models don't have `dropout` param, they have `dropout_rate` instead
equivalent_param["dropout"] = "dropout_rate"
for p in extra_params:
if getattr(hparams, p, None):
if not hasattr(config, p) and not hasattr(config, equivalent_param[p]):
logger.info("config doesn't have a `{}` attribute".format(p))
delattr(hparams, p)
continue
set_p = p if hasattr(config, p) else equivalent_param[p]
setattr(config, set_p, getattr(hparams, p))
delattr(hparams, p)
return hparams, config
| transformers-main | examples/research_projects/rag-end2end-retriever/utils_rag.py |
import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_parameters = filter(lambda p: p.requires_grad, model.parameters())
params = sum([np.prod(p.size()) for p in model_parameters])
return params
logger = logging.getLogger(__name__)
def get_checkpoint_callback(output_dir, metric):
"""Saves the best model by validation EM score."""
if metric == "rouge2":
exp = "{val_avg_rouge2:.4f}-{step_count}"
elif metric == "bleu":
exp = "{val_avg_bleu:.4f}-{step_count}"
elif metric == "em":
exp = "{val_avg_em:.4f}-{step_count}"
elif metric == "loss":
exp = "{val_avg_loss:.4f}-{step_count}"
else:
raise NotImplementedError(
f"seq2seq callbacks only support rouge2 and bleu, got {metric}, You can make your own by adding to this"
" function."
)
checkpoint_callback = ModelCheckpoint(
dirpath=output_dir,
filename=exp,
monitor=f"val_{metric}",
mode="max",
save_top_k=1,
every_n_epochs=1, # works only with PL > 1.3
)
return checkpoint_callback
def get_early_stopping_callback(metric, patience):
return EarlyStopping(
monitor=f"val_{metric}", # does this need avg?
mode="min" if "loss" in metric else "max",
patience=patience,
verbose=True,
)
class Seq2SeqLoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
pl_module.logger.log_metrics(lrs)
@rank_zero_only
def _write_logs(
self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
) -> None:
logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
metrics = trainer.callback_metrics
trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
# Log results
od = Path(pl_module.hparams.output_dir)
if type_path == "test":
results_file = od / "test_results.txt"
generations_file = od / "test_generations.txt"
else:
# this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
# If people want this it will be easy enough to add back.
results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
results_file.parent.mkdir(exist_ok=True)
generations_file.parent.mkdir(exist_ok=True)
with open(results_file, "a+") as writer:
for key in sorted(metrics):
if key in ["log", "progress_bar", "preds"]:
continue
val = metrics[key]
if isinstance(val, torch.Tensor):
val = val.item()
msg = f"{key}: {val:.6f}\n"
writer.write(msg)
if not save_generations:
return
if "preds" in metrics:
content = "\n".join(metrics["preds"])
generations_file.open("w+").write(content)
@rank_zero_only
def on_train_start(self, trainer, pl_module):
try:
npars = pl_module.model.model.num_parameters()
except AttributeError:
npars = pl_module.model.num_parameters()
n_trainable_pars = count_trainable_parameters(pl_module)
# mp stands for million parameters
trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
@rank_zero_only
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
save_json(pl_module.metrics, pl_module.metrics_save_path)
return self._write_logs(trainer, pl_module, "test")
@rank_zero_only
def on_validation_end(self, trainer: pl.Trainer, pl_module):
save_json(pl_module.metrics, pl_module.metrics_save_path)
# Uncommenting this will save val generations
# return self._write_logs(trainer, pl_module, "valid")
| transformers-main | examples/research_projects/rag-end2end-retriever/callbacks_rag.py |
import os
from functools import partial
from glob import glob
import faiss
from datasets import Features, Sequence, Value, concatenate_datasets, load_dataset, load_from_disk
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast
def split_text(text, n=100, character=" "):
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents):
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed_update(ctx_encoder, total_processes, device, process_num, shard_dir, csv_path):
kb_dataset = load_dataset(
"csv", data_files=[csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
kb_dataset = kb_dataset.map(
split_documents, batched=True, num_proc=1
) # if you want you can load already splitted csv.
kb_list = [kb_dataset.shard(total_processes, i, contiguous=True) for i in range(total_processes)]
data_shrad = kb_list[process_num]
arrow_folder = "data_" + str(process_num)
passages_path = os.path.join(shard_dir, arrow_folder)
context_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained("facebook/dpr-ctx_encoder-multiset-base")
ctx_encoder = ctx_encoder.to(device=device)
def embed(
documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast, device
) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = data_shrad.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=context_tokenizer, device=device),
batched=True,
batch_size=16,
features=new_features,
)
dataset.save_to_disk(passages_path)
def add_index(shard_dir, index_path):
data_shard_list = []
for shard_address in glob(str(shard_dir) + "/*/"):
data_shard_list.append(load_from_disk(shard_address))
concat = concatenate_datasets(data_shard_list)
faiss.omp_set_num_threads(96)
index = faiss.IndexHNSWFlat(768, 128, faiss.METRIC_INNER_PRODUCT)
concat.add_faiss_index("embeddings", custom_index=index)
concat.get_index("embeddings").save(
index_path
) # since we load the index in to memory,we can directly update the index in the disk
| transformers-main | examples/research_projects/rag-end2end-retriever/kb_encode_utils.py |
import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs,
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [
p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)
], # check this named paramters
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, stage):
if stage == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default=str(Path(__file__).parent / "test_run" / "cache"),
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class InitCallback(pl.Callback):
# this process can also be done with PL ddp plugging.
# But still it is experimental (check original RAG, I updated that with pluggin (shamanez))
def on_sanity_check_start(self, trainer, pl_module):
if (
trainer.is_global_zero and trainer.global_rank == 0
): # we initialize the retriever only on master worker with RAY. In new pytorch-lightning accelorators are removed.
pl_module.model.rag.retriever.init_retrieval() # better to use hook functions.
class CheckParamCallback(pl.Callback):
# check whether new added model paramters are differentiable
def on_after_backward(self, trainer, pl_module):
# print(pl_module.model.rag)
for name, param in pl_module.model.rag.named_parameters():
if param.grad is None:
print(name)
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=str(Path(__file__).parent / "test_run" / "model_checkpoints"),
type=str,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=str(Path(__file__).parent / "test_run" / "dummy-train-data"),
type=str,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs,
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
if args.fp16:
train_params["precision"] = 16
if args.gpus > 1:
train_params["accelerator"] = "auto"
train_params["strategy"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
train_params["profiler"] = None
train_params["devices"] = "auto"
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks + [InitCallback()] + [checkpoint_callback],
logger=logger,
val_check_interval=1,
num_sanity_val_steps=2,
**train_params,
)
if args.do_train:
trainer.fit(model)
else:
print("RAG modeling tests with new set functions successfuly executed!")
return trainer
| transformers-main | examples/research_projects/rag-end2end-retriever/lightning_base.py |
import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(self, config, question_encoder_tokenizer, generator_tokenizer, index):
if not self.initialized:
self.retriever = RagRetriever(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.initialized = True
def init_retrieval(self):
self.retriever.index.init_index()
def clear_object(self):
# delete the old self.retriever object before assigning the new index
del self.retriever
self.initialized = False
def retrieve(self, question_hidden_states, n_docs):
doc_ids, retrieved_doc_embeds = self.retriever._main_retrieve(question_hidden_states, n_docs)
doc_dicts = self.retriever.index.get_doc_dicts(doc_ids)
return doc_ids, retrieved_doc_embeds, doc_dicts
class RagRayDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``Ray`` API, a library
for building distributed applications (https://docs.ray.io/en/master/).
package. During training, all training workers initialize their own
instance of a `RagRayDistributedRetriever`, and each instance of
this distributed retriever shares a common set of Retrieval Ray
Actors (https://docs.ray.io/en/master/walkthrough.html#remote
-classes-actors) that load the index on separate processes. Ray
handles the communication between the `RagRayDistributedRetriever`
instances and the remote Ray actors. If training is done in a
non-distributed setup, the index will simply be loaded in the same
process as the training worker and Ray will not be used.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
retrieval_workers (:obj:`List[ray.ActorClass(RayRetriever)]`): A list of already initialized `RayRetriever` actors.
These actor classes run on remote processes and are responsible for performing the index lookup.
index (:class:`~transformers.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, retrieval_workers, index=None):
if index is not None and index.is_initialized() and len(retrieval_workers) > 0:
raise ValueError(
"When using Ray for distributed fine-tuning, "
"you'll need to provide the paths instead, "
"as the dataset and the index are loaded "
"separately. More info in examples/rag/use_own_knowledge_dataset.py "
)
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.retrieval_workers = retrieval_workers
self.question_encoder_tokenizer = question_encoder_tokenizer
self.generator_tokenizer = generator_tokenizer
if len(self.retrieval_workers) > 0:
ray.get(
[
worker.create_rag_retriever.remote(config, question_encoder_tokenizer, generator_tokenizer, index)
for worker in self.retrieval_workers
]
)
def init_retrieval(self):
"""
Retriever initialization function, needs to be called from the
training process. This function triggers retrieval initialization
for all retrieval actors if using distributed setting, or loads
index into current process if training is not distributed.
"""
logger.info("initializing retrieval")
if len(self.retrieval_workers) > 0:
ray.get([worker.init_retrieval.remote() for worker in self.retrieval_workers])
else:
# Non-distributed training. Load index into this same process.
self.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
"""
Retrieves documents for specified ``question_hidden_states``. If
running training with multiple workers, a random retrieval actor is
selected to perform the index lookup and return the result.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
if len(self.retrieval_workers) > 0:
# Select a random retrieval actor.
random_worker = self.retrieval_workers[random.randint(0, len(self.retrieval_workers) - 1)]
doc_ids, retrieved_doc_embeds, doc_dicts = ray.get(
random_worker.retrieve.remote(question_hidden_states, n_docs)
)
else:
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
doc_dicts = self.index.get_doc_dicts(doc_ids)
return retrieved_doc_embeds, doc_ids, doc_dicts
@classmethod
def get_tokenizers(cls, retriever_name_or_path, indexed_dataset=None, **kwargs):
return super(RagRayDistributedRetriever, cls).get_tokenizers(retriever_name_or_path, indexed_dataset, **kwargs)
@classmethod
def from_pretrained(cls, retriever_name_or_path, actor_handles, indexed_dataset=None, **kwargs):
config = kwargs.pop("config", None) or RagConfig.from_pretrained(retriever_name_or_path, **kwargs)
rag_tokenizer = RagTokenizer.from_pretrained(retriever_name_or_path, config=config)
question_encoder_tokenizer = rag_tokenizer.question_encoder
generator_tokenizer = rag_tokenizer.generator
if indexed_dataset is not None:
config.index_name = "custom"
index = CustomHFIndex(config.retrieval_vector_size, indexed_dataset)
else:
index = cls._build_index(config)
return cls(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
retrieval_workers=actor_handles,
index=index,
)
def re_load(self):
logger.info("re-loading the new dataset with embeddings")
# access from the training loop
ray.get([worker.clear_object.remote() for worker in self.retrieval_workers])
# build the index object again
index = self._build_index(self.config)
ray.get(
[
worker.create_rag_retriever.remote(
self.config, self.question_encoder_tokenizer, self.generator_tokenizer, index
)
for worker in self.retrieval_workers
]
)
| transformers-main | examples/research_projects/rag-end2end-retriever/distributed_ray_retriever.py |
""" Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as transformers_logging
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # isort:skip
from utils_rag import exact_match_score, f1_score # noqa: E402 # isort:skip
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.INFO)
transformers_logging.set_verbosity_info()
def infer_model_type(model_name_or_path):
if "token" in model_name_or_path:
return "rag_token"
if "sequence" in model_name_or_path:
return "rag_sequence"
if "bart" in model_name_or_path:
return "bart"
return None
def metric_max_over_ground_truths(metric_fn, prediction, ground_truths):
return max(metric_fn(prediction, gt) for gt in ground_truths)
def get_scores(args, preds_path, gold_data_path):
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
answers = []
if args.gold_data_mode == "qa":
data = pd.read_csv(gold_data_path, sep="\t", header=None)
for answer_list in data[1]:
ground_truths = ast.literal_eval(answer_list)
answers.append(ground_truths)
else:
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
answers = [[reference] for reference in references]
f1 = em = total = 0
for prediction, ground_truths in zip(hypos, answers):
total += 1
em += metric_max_over_ground_truths(exact_match_score, prediction, ground_truths)
f1 += metric_max_over_ground_truths(f1_score, prediction, ground_truths)
em = 100.0 * em / total
f1 = 100.0 * f1 / total
logger.info(f"F1: {f1:.2f}")
logger.info(f"EM: {em:.2f}")
def get_precision_at_k(args, preds_path, gold_data_path):
k = args.k
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
em = total = 0
for hypo, reference in zip(hypos, references):
hypo_provenance = set(hypo.split("\t")[:k])
ref_provenance = set(reference.split("\t"))
total += 1
em += len(hypo_provenance & ref_provenance) / k
em = 100.0 * em / total
logger.info(f"Precision@{k}: {em: .2f}")
def evaluate_batch_retrieval(args, rag_model, questions):
def strip_title(title):
if title.startswith('"'):
title = title[1:]
if title.endswith('"'):
title = title[:-1]
return title
retriever_input_ids = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions,
return_tensors="pt",
padding=True,
truncation=True,
)["input_ids"].to(args.device)
question_enc_outputs = rag_model.rag.question_encoder(retriever_input_ids)
question_enc_pool_output = question_enc_outputs[0]
result = rag_model.retriever(
retriever_input_ids,
question_enc_pool_output.cpu().detach().to(torch.float32).numpy(),
prefix=rag_model.rag.generator.config.prefix,
n_docs=rag_model.config.n_docs,
return_tensors="pt",
)
all_docs = rag_model.retriever.index.get_doc_dicts(result.doc_ids)
provenance_strings = []
for docs in all_docs:
provenance = [strip_title(title) for title in docs["title"]]
provenance_strings.append("\t".join(provenance))
return provenance_strings
def evaluate_batch_e2e(args, rag_model, questions):
with torch.no_grad():
inputs_dict = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions, return_tensors="pt", padding=True, truncation=True
)
input_ids = inputs_dict.input_ids.to(args.device)
attention_mask = inputs_dict.attention_mask.to(args.device)
outputs = rag_model.generate( # rag_model overwrites generate
input_ids,
attention_mask=attention_mask,
num_beams=args.num_beams,
min_length=args.min_length,
max_length=args.max_length,
early_stopping=False,
num_return_sequences=1,
bad_words_ids=[[0, 0]], # BART likes to repeat BOS tokens, dont allow it to generate more than one
)
answers = rag_model.retriever.generator_tokenizer.batch_decode(outputs, skip_special_tokens=True)
if args.print_predictions:
for q, a in zip(questions, answers):
logger.info("Q: {} - A: {}".format(q, a))
return answers
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart"],
type=str,
help=(
"RAG model type: rag_sequence, rag_token or bart, if none specified, the type is inferred from the"
" model_name_or_path"
),
)
parser.add_argument(
"--index_name",
default=None,
choices=["exact", "compressed", "legacy"],
type=str,
help="RAG model retriever type",
)
parser.add_argument(
"--index_path",
default=None,
type=str,
help="Path to the retrieval index",
)
parser.add_argument("--n_docs", default=5, type=int, help="Number of retrieved docs")
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained checkpoints or model identifier from huggingface.co/models",
)
parser.add_argument(
"--eval_mode",
choices=["e2e", "retrieval"],
default="e2e",
type=str,
help=(
"Evaluation mode, e2e calculates exact match and F1 of the downstream task, retrieval calculates"
" precision@k."
),
)
parser.add_argument("--k", default=1, type=int, help="k for the precision@k calculation")
parser.add_argument(
"--evaluation_set",
default=None,
type=str,
required=True,
help="Path to a file containing evaluation samples",
)
parser.add_argument(
"--gold_data_path",
default=None,
type=str,
required=True,
help="Path to a tab-separated file with gold samples",
)
parser.add_argument(
"--gold_data_mode",
default="qa",
type=str,
choices=["qa", "ans"],
help=(
"Format of the gold data file"
"qa - a single line in the following format: question [tab] answer_list"
"ans - a single line of the gold file contains the expected answer string"
),
)
parser.add_argument(
"--predictions_path",
type=str,
default="predictions.txt",
help="Name of the predictions file, to be stored in the checkpoints directory",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument(
"--eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--recalculate",
help="Recalculate predictions even if the prediction file exists",
action="store_true",
)
parser.add_argument(
"--num_beams",
default=4,
type=int,
help="Number of beams to be used when generating answers",
)
parser.add_argument("--min_length", default=1, type=int, help="Min length of the generated answers")
parser.add_argument("--max_length", default=50, type=int, help="Max length of the generated answers")
parser.add_argument(
"--print_predictions",
action="store_true",
help="If True, prints predictions while evaluating.",
)
parser.add_argument(
"--print_docs",
action="store_true",
help="If True, prints docs retried while generating.",
)
args = parser.parse_args()
args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
return args
def main(args):
model_kwargs = {}
if args.model_type is None:
args.model_type = infer_model_type(args.model_name_or_path)
assert args.model_type is not None
if args.model_type.startswith("rag"):
model_class = RagTokenForGeneration if args.model_type == "rag_token" else RagSequenceForGeneration
model_kwargs["n_docs"] = args.n_docs
if args.index_name is not None:
model_kwargs["index_name"] = args.index_name
if args.index_path is not None:
model_kwargs["index_path"] = args.index_path
else:
model_class = BartForConditionalGeneration
checkpoints = (
[f.path for f in os.scandir(args.model_name_or_path) if f.is_dir()]
if args.eval_all_checkpoints
else [args.model_name_or_path]
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
score_fn = get_scores if args.eval_mode == "e2e" else get_precision_at_k
evaluate_batch_fn = evaluate_batch_e2e if args.eval_mode == "e2e" else evaluate_batch_retrieval
for checkpoint in checkpoints:
if os.path.exists(args.predictions_path) and (not args.recalculate):
logger.info("Calculating metrics based on an existing predictions file: {}".format(args.predictions_path))
score_fn(args, args.predictions_path, args.gold_data_path)
continue
logger.info("***** Running evaluation for {} *****".format(checkpoint))
logger.info(" Batch size = %d", args.eval_batch_size)
logger.info(" Predictions will be stored under {}".format(args.predictions_path))
if args.model_type.startswith("rag"):
retriever = RagRetriever.from_pretrained(checkpoint, **model_kwargs)
model = model_class.from_pretrained(checkpoint, retriever=retriever, **model_kwargs)
model.retriever.init_retrieval()
else:
model = model_class.from_pretrained(checkpoint, **model_kwargs)
model.to(args.device)
with open(args.evaluation_set, "r") as eval_file, open(args.predictions_path, "w") as preds_file:
questions = []
for line in tqdm(eval_file):
questions.append(line.strip())
if len(questions) == args.eval_batch_size:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers) + "\n")
preds_file.flush()
questions = []
if len(questions) > 0:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers))
preds_file.flush()
score_fn(args, args.predictions_path, args.gold_data_path)
if __name__ == "__main__":
args = get_args()
main(args)
| transformers-main | examples/research_projects/rag-end2end-retriever/eval_rag.py |
import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import faiss
import torch
from datasets import Features, Sequence, Value, load_dataset
from transformers import DPRContextEncoder, DPRContextEncoderTokenizerFast, HfArgumentParser
logger = logging.getLogger(__name__)
torch.set_grad_enabled(False)
device = "cuda" if torch.cuda.is_available() else "cpu"
def split_text(text: str, n=100, character=" ") -> List[str]:
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents: dict) -> dict:
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed(documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
def main(
rag_example_args: "RagExampleArguments",
processing_args: "ProcessingArguments",
index_hnsw_args: "IndexHnswArguments",
):
######################################
logger.info("Step 1 - Create the dataset")
######################################
# The dataset needed for RAG must have three columns:
# - title (string): title of the document
# - text (string): text of a passage of the document
# - embeddings (array of dimension d): DPR representation of the passage
# Let's say you have documents in tab-separated csv files with columns "title" and "text"
assert os.path.isfile(rag_example_args.csv_path), "Please provide a valid path to a csv file"
# You can load a Dataset object this way
dataset = load_dataset(
"csv", data_files=[rag_example_args.csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
# More info about loading csv files in the documentation: https://huggingface.co/docs/datasets/loading_datasets.html?highlight=csv#csv-files
# Then split the documents into passages of 100 words
dataset = dataset.map(split_documents, batched=True, num_proc=processing_args.num_proc)
# And compute the embeddings
ctx_encoder = DPRContextEncoder.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name).to(device=device)
ctx_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name)
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = dataset.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=ctx_tokenizer),
batched=True,
batch_size=processing_args.batch_size,
features=new_features,
)
# And finally save your dataset
passages_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset")
dataset.save_to_disk(passages_path)
# from datasets import load_from_disk
# dataset = load_from_disk(passages_path) # to reload the dataset
######################################
logger.info("Step 2 - Index the dataset")
######################################
# Let's use the Faiss implementation of HNSW for fast approximate nearest neighbor search
index = faiss.IndexHNSWFlat(index_hnsw_args.d, index_hnsw_args.m, faiss.METRIC_INNER_PRODUCT)
dataset.add_faiss_index("embeddings", custom_index=index)
# And save the index
index_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset_hnsw_index.faiss")
dataset.get_index("embeddings").save(index_path)
# dataset.load_faiss_index("embeddings", index_path) # to reload the index
@dataclass
class RagExampleArguments:
csv_path: str = field(
default=str(Path(__file__).parent / "test_run" / "dummy-kb" / "my_knowledge_dataset.csv"),
metadata={"help": "Path to a tab-separated csv file with columns 'title' and 'text'"},
)
question: Optional[str] = field(
default=None,
metadata={"help": "Question that is passed as input to RAG. Default is 'What does Moses' rod turn into ?'."},
)
rag_model_name: str = field(
default="facebook/rag-sequence-nq",
metadata={"help": "The RAG model to use. Either 'facebook/rag-sequence-nq' or 'facebook/rag-token-nq'"},
)
dpr_ctx_encoder_model_name: str = field(
default="facebook/dpr-ctx_encoder-multiset-base",
metadata={
"help": (
"The DPR context encoder model to use. Either 'facebook/dpr-ctx_encoder-single-nq-base' or"
" 'facebook/dpr-ctx_encoder-multiset-base'"
)
},
)
output_dir: Optional[str] = field(
default=str(Path(__file__).parent / "test_run" / "dummy-kb"),
metadata={"help": "Path to a directory where the dataset passages and the index will be saved"},
)
@dataclass
class ProcessingArguments:
num_proc: Optional[int] = field(
default=None,
metadata={
"help": "The number of processes to use to split the documents into passages. Default is single process."
},
)
batch_size: int = field(
default=16,
metadata={
"help": "The batch size to use when computing the passages embeddings using the DPR context encoder."
},
)
@dataclass
class IndexHnswArguments:
d: int = field(
default=768,
metadata={"help": "The dimension of the embeddings to pass to the HNSW Faiss index."},
)
m: int = field(
default=128,
metadata={
"help": (
"The number of bi-directional links created for every new element during the HNSW index construction."
)
},
)
if __name__ == "__main__":
logging.basicConfig(level=logging.WARNING)
logger.setLevel(logging.INFO)
parser = HfArgumentParser((RagExampleArguments, ProcessingArguments, IndexHnswArguments))
rag_example_args, processing_args, index_hnsw_args = parser.parse_args_into_dataclasses()
with TemporaryDirectory() as tmp_dir:
rag_example_args.output_dir = rag_example_args.output_dir or tmp_dir
main(rag_example_args, processing_args, index_hnsw_args)
| transformers-main | examples/research_projects/rag-end2end-retriever/use_own_knowledge_dataset.py |
import gym
import numpy as np
import torch
from mujoco_py import GlfwContext
from transformers import DecisionTransformerModel
GlfwContext(offscreen=True) # Create a window to init GLFW.
def get_action(model, states, actions, rewards, returns_to_go, timesteps):
# we don't care about the past rewards in this model
states = states.reshape(1, -1, model.config.state_dim)
actions = actions.reshape(1, -1, model.config.act_dim)
returns_to_go = returns_to_go.reshape(1, -1, 1)
timesteps = timesteps.reshape(1, -1)
if model.config.max_length is not None:
states = states[:, -model.config.max_length :]
actions = actions[:, -model.config.max_length :]
returns_to_go = returns_to_go[:, -model.config.max_length :]
timesteps = timesteps[:, -model.config.max_length :]
# pad all tokens to sequence length
attention_mask = torch.cat(
[torch.zeros(model.config.max_length - states.shape[1]), torch.ones(states.shape[1])]
)
attention_mask = attention_mask.to(dtype=torch.long, device=states.device).reshape(1, -1)
states = torch.cat(
[
torch.zeros(
(states.shape[0], model.config.max_length - states.shape[1], model.config.state_dim),
device=states.device,
),
states,
],
dim=1,
).to(dtype=torch.float32)
actions = torch.cat(
[
torch.zeros(
(actions.shape[0], model.config.max_length - actions.shape[1], model.config.act_dim),
device=actions.device,
),
actions,
],
dim=1,
).to(dtype=torch.float32)
returns_to_go = torch.cat(
[
torch.zeros(
(returns_to_go.shape[0], model.config.max_length - returns_to_go.shape[1], 1),
device=returns_to_go.device,
),
returns_to_go,
],
dim=1,
).to(dtype=torch.float32)
timesteps = torch.cat(
[
torch.zeros(
(timesteps.shape[0], model.config.max_length - timesteps.shape[1]), device=timesteps.device
),
timesteps,
],
dim=1,
).to(dtype=torch.long)
else:
attention_mask = None
_, action_preds, _ = model(
states=states,
actions=actions,
rewards=rewards,
returns_to_go=returns_to_go,
timesteps=timesteps,
attention_mask=attention_mask,
return_dict=False,
)
return action_preds[0, -1]
# build the environment
env = gym.make("Hopper-v3")
state_dim = env.observation_space.shape[0]
act_dim = env.action_space.shape[0]
max_ep_len = 1000
device = "cuda"
scale = 1000.0 # normalization for rewards/returns
TARGET_RETURN = 3600 / scale # evaluation conditioning targets, 3600 is reasonable from the paper LINK
state_mean = np.array(
[
1.311279,
-0.08469521,
-0.5382719,
-0.07201576,
0.04932366,
2.1066856,
-0.15017354,
0.00878345,
-0.2848186,
-0.18540096,
-0.28461286,
]
)
state_std = np.array(
[
0.17790751,
0.05444621,
0.21297139,
0.14530419,
0.6124444,
0.85174465,
1.4515252,
0.6751696,
1.536239,
1.6160746,
5.6072536,
]
)
state_mean = torch.from_numpy(state_mean).to(device=device)
state_std = torch.from_numpy(state_std).to(device=device)
# Create the decision transformer model
model = DecisionTransformerModel.from_pretrained("edbeeching/decision-transformer-gym-hopper-medium")
model = model.to(device)
model.eval()
for ep in range(10):
episode_return, episode_length = 0, 0
state = env.reset()
target_return = torch.tensor(TARGET_RETURN, device=device, dtype=torch.float32).reshape(1, 1)
states = torch.from_numpy(state).reshape(1, state_dim).to(device=device, dtype=torch.float32)
actions = torch.zeros((0, act_dim), device=device, dtype=torch.float32)
rewards = torch.zeros(0, device=device, dtype=torch.float32)
timesteps = torch.tensor(0, device=device, dtype=torch.long).reshape(1, 1)
for t in range(max_ep_len):
env.render()
# add padding
actions = torch.cat([actions, torch.zeros((1, act_dim), device=device)], dim=0)
rewards = torch.cat([rewards, torch.zeros(1, device=device)])
action = get_action(
model,
(states.to(dtype=torch.float32) - state_mean) / state_std,
actions.to(dtype=torch.float32),
rewards.to(dtype=torch.float32),
target_return.to(dtype=torch.float32),
timesteps.to(dtype=torch.long),
)
actions[-1] = action
action = action.detach().cpu().numpy()
state, reward, done, _ = env.step(action)
cur_state = torch.from_numpy(state).to(device=device).reshape(1, state_dim)
states = torch.cat([states, cur_state], dim=0)
rewards[-1] = reward
pred_return = target_return[0, -1] - (reward / scale)
target_return = torch.cat([target_return, pred_return.reshape(1, 1)], dim=1)
timesteps = torch.cat([timesteps, torch.ones((1, 1), device=device, dtype=torch.long) * (t + 1)], dim=1)
episode_return += reward
episode_length += 1
if done:
break
| transformers-main | examples/research_projects/decision_transformer/run_decision_transformer.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers pretrained speech model on the XTREME-S benchmark tasks"""
import json
import logging
import os
import re
import sys
from collections import OrderedDict, defaultdict
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import datasets
import numpy as np
import torch
from datasets import DatasetDict, load_dataset, load_metric
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForAudioClassification,
AutoModelForCTC,
AutoModelForSpeechSeq2Seq,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Seq2SeqTrainer,
Seq2SeqTrainingArguments,
Trainer,
set_seed,
)
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.18.0.dev0")
require_version("datasets>=1.18.0", "To fix: pip install -r examples/pytorch/speech-recognition/requirements.txt")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
TASK_TO_TARGET_COLUMN_NAME = {
"fleurs-asr": "transcription",
"fleurs-lang_id": "lang_id",
"mls": "transcription",
"voxpopuli": "transcription",
"covost2": "translation",
"minds14": "intent_class",
"babel": "transcription",
}
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={
"help": "Where do you want to store the pretrained models and datasets downloaded from huggingface.co"
},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": (
"Probability of each feature vector along the time axis to be chosen as the start of the vector"
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature"
"vectors will be masked along the time axis."
)
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": (
"Probability of each feature vector along the feature axis to be chosen as the start of the vectorspan"
" to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature"
" bins will be masked along the time axis."
)
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_zero_infinity: bool = field(
default=False,
metadata={"help": "Whether to zero infinite losses and the associated gradients of `torch.nn.CTCLoss`."},
)
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
default="google/xtreme_s",
metadata={"help": "The name of the dataset to use (via the datasets library). Defaults to 'google/xtreme_s'"},
)
task: str = field(
default=None,
metadata={
"help": (
"The task name of the benchmark to use (via the datasets library). Should be on of: "
"'fleurs-asr', 'mls', 'voxpopuli', 'covost2', 'minds14', 'fleurs-lang_id', 'babel'."
)
},
)
language: str = field(
default="all",
metadata={"help": "The language id as defined in the datasets config name or `all` for all languages."},
)
language_group: str = field(
default=None,
metadata={
"help": (
"The language group to select a subset of languages to train on. "
"This option is only used the 'fleurs-asr' task. Should be one of: "
"'western_european_we', 'eastern_european_ee', 'central_asia_middle_north_african_cmn', "
"'sub_saharan_african_ssa', 'south_asian_sa', 'south_east_asian_sea', 'chinese_japanase_korean_cjk'."
)
},
)
train_split_name: str = field(
default="train",
metadata={
"help": "The name of the training dataset split to use (via the datasets library). Defaults to 'train'"
},
)
eval_split_name: str = field(
default="validation",
metadata={
"help": (
"The name of the evaluation dataset split to use (via the datasets library). Defaults to 'validation'"
)
},
)
predict_split_name: str = field(
default="test",
metadata={
"help": "The name of the prediction dataset split to use (via the datasets library). Defaults to 'test'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
target_column_name: str = field(
default=None,
metadata={
"help": (
"The name of the dataset column containing the target data (transcription/translation/label). If None,"
" the name will be inferred from the task. Defaults to None."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=', ? . ! - ; : " “ % ‘ ” �'.split(" "),
metadata={"help": "A list of characters to remove from the transcripts."},
)
max_duration_in_seconds: float = field(
default=30.0,
metadata={
"help": (
"Filter audio files that are longer than `max_duration_in_seconds` seconds to"
" 'max_duration_in_seconds`"
)
},
)
min_duration_in_seconds: float = field(
default=0.0, metadata={"help": "Filter audio files that are shorter than `min_duration_in_seconds` seconds"}
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": (
"Whether to only do data preprocessing and skip training. This is especially useful when data"
" preprocessing errors out in distributed training due to timeout. In this case, one should run the"
" preprocessing in a non-distributed setup with `preprocessing_only=True` so that the cached datasets"
" can consequently be loaded in distributed training"
)
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"If :obj:`True`, will use the token generated when running"
":obj:`huggingface-cli login` as HTTP bearer authorization for remote files."
)
},
)
unk_token: str = field(
default="[UNK]",
metadata={"help": "The unk token for the tokenizer"},
)
pad_token: str = field(
default="[PAD]",
metadata={"help": "The padding token for the tokenizer"},
)
word_delimiter_token: str = field(
default="|",
metadata={"help": "The word delimiter token for the tokenizer"},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": (
"The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
)
},
)
per_lang_metrics: bool = field(
default=True,
metadata={
"help": (
"If `True`, compute the test metrics separately for each language, and average the results. "
"If `False` compute the average test metrics in a single pass for all languages at once."
)
},
)
@dataclass
class SpeechDataCollatorWithPadding:
processor: AutoProcessor
decoder_start_token_id: Optional[int] = None
padding: Union[bool, str] = "longest"
pad_labels: Optional[int] = True
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lenghts and need
# different padding methods
input_features = [{"input_values": feature["input_values"]} for feature in features]
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
if self.pad_labels:
label_features = [{"input_ids": feature["labels"]} for feature in features]
labels_batch = self.processor.pad(
labels=label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
# if bos token is appended in previous tokenization step,
# cut bos token here as it's append later anyways
if (
self.decoder_start_token_id is not None
and (labels[:, 0] == self.decoder_start_token_id).all().cpu().item()
):
labels = labels[:, 1:]
batch["labels"] = labels
else:
batch["labels"] = torch.tensor([feature["labels"] for feature in features])
return batch
def create_vocabulary_from_data(
datasets: DatasetDict,
word_delimiter_token: Optional[str] = None,
unk_token: Optional[str] = None,
pad_token: Optional[str] = None,
):
# Given training and test labels create vocabulary
def extract_all_chars(batch):
all_text = " ".join(batch["target_text"])
vocab = list(set(all_text))
return {"vocab": [vocab], "all_text": [all_text]}
vocabs = datasets.map(
extract_all_chars,
batched=True,
batch_size=-1,
keep_in_memory=True,
remove_columns=datasets["train"].column_names,
)
# take union of all unique characters in each dataset
vocab_set = (
(set(vocabs["train"]["vocab"][0]) if "train" in vocabs else set())
| (set(vocabs["eval"]["vocab"][0]) if "eval" in vocabs else set())
| (set(vocabs["predict"]["vocab"][0]) if "predict" in vocabs else set())
)
vocab_dict = {v: k for k, v in enumerate(sorted(vocab_set))}
# replace white space with delimiter token
if word_delimiter_token is not None:
vocab_dict[word_delimiter_token] = vocab_dict[" "]
del vocab_dict[" "]
# add unk and pad token
if unk_token is not None:
vocab_dict[unk_token] = len(vocab_dict)
if pad_token is not None:
vocab_dict[pad_token] = len(vocab_dict)
return vocab_dict
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, Seq2SeqTrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = DatasetDict()
task_name = data_args.task
lang_id = data_args.language
if task_name is None:
raise ValueError(
"Set --task should be set to '<xtreme_s_task>' (e.g. 'fleurs-asr', 'mls', 'covost2', 'minds14') "
)
if lang_id is None:
raise ValueError(
"Set --language should be set to the language id of the sub dataset "
"config to be used (e.g. 'pl', 'en.tr', 'fr-FR') or 'all'"
" for multi-lingual fine-tuning."
)
if data_args.language_group is not None:
if data_args.task != "fleurs-asr":
raise ValueError("--language_group should only be used with --task=fleurs-asr")
if data_args.language != "all":
raise ValueError("--language_group should only be used with --language=all")
if data_args.target_column_name is None:
target_column_name = TASK_TO_TARGET_COLUMN_NAME[task_name]
else:
target_column_name = data_args.target_column_name
# here we differentiate between tasks with text as the target and classification tasks
is_text_target = target_column_name in ("transcription", "translation")
config_name = ".".join([task_name.split("-")[0], lang_id])
if training_args.do_train:
raw_datasets["train"] = load_dataset(
data_args.dataset_name,
config_name,
split=data_args.train_split_name,
use_auth_token=data_args.use_auth_token,
cache_dir=model_args.cache_dir,
)
if data_args.audio_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'."
" Make sure to set `--audio_column_name` to the correct audio column - one of"
f" {', '.join(raw_datasets['train'].column_names)}."
)
if target_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--target_column_name {target_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--target_column_name` to the correct text column - one of "
f"{', '.join(raw_datasets['train'].column_names)}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].select(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"] = load_dataset(
data_args.dataset_name,
config_name,
split=data_args.eval_split_name,
use_auth_token=data_args.use_auth_token,
cache_dir=model_args.cache_dir,
)
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].select(range(data_args.max_eval_samples))
if training_args.do_predict:
raw_datasets["predict"] = load_dataset(
data_args.dataset_name,
config_name,
split=data_args.predict_split_name,
use_auth_token=data_args.use_auth_token,
cache_dir=model_args.cache_dir,
)
if data_args.max_predict_samples is not None:
raw_datasets["predict"] = raw_datasets["predict"].select(range(data_args.max_predict_samples))
lang_list = next(iter(raw_datasets.values())).features["lang_id"].names
if not is_text_target:
label_list = next(iter(raw_datasets.values())).features[target_column_name].names
num_labels = len(label_list)
num_workers = data_args.preprocessing_num_workers
lang_group = data_args.language_group
if lang_group is not None:
with training_args.main_process_first(desc="language group filter"):
lang_group_id = next(iter(raw_datasets.values())).features["lang_group_id"].str2int(lang_group)
raw_datasets = raw_datasets.filter(
lambda lang_group: lang_group == lang_group_id,
num_proc=num_workers,
input_columns=["lang_group_id"],
)
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[target_column_name]).lower() + " "
else:
batch["target_text"] = batch[target_column_name].lower() + " "
return batch
if is_text_target:
with training_args.main_process_first(desc="dataset map special characters removal"):
raw_datasets = raw_datasets.map(
remove_special_characters,
remove_columns=[target_column_name],
desc="remove special characters from datasets",
)
# save special tokens for tokenizer
word_delimiter_token = data_args.word_delimiter_token
unk_token = data_args.unk_token
pad_token = data_args.pad_token
# 3. Next, let's load the config as we might need it to create
# the tokenizer
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_auth_token=data_args.use_auth_token
)
if is_text_target:
# 4. (Optional, for ASR and translation) If no tokenizer file is defined,
# we create the vocabulary of the model by extracting all unique characters from
# the training and evaluation datasets
# We need to make sure that only first rank saves vocabulary
# make sure all processes wait until vocab is created
tokenizer_name_or_path = model_args.tokenizer_name_or_path
tokenizer_kwargs = {}
if tokenizer_name_or_path is None:
# save vocab in training output dir
tokenizer_name_or_path = training_args.output_dir
vocab_file = os.path.join(tokenizer_name_or_path, "vocab.json")
with training_args.main_process_first():
if training_args.overwrite_output_dir and os.path.isfile(vocab_file):
os.remove(vocab_file)
with training_args.main_process_first(desc="dataset map vocabulary creation"):
if not os.path.isfile(vocab_file):
os.makedirs(tokenizer_name_or_path, exist_ok=True)
vocab_dict = create_vocabulary_from_data(
raw_datasets,
word_delimiter_token=word_delimiter_token,
unk_token=unk_token,
pad_token=pad_token,
)
# save vocab dict to be loaded into tokenizer
with open(vocab_file, "w") as file:
json.dump(vocab_dict, file)
# if tokenizer has just been created
# it is defined by `tokenizer_class` if present in config else by `model_type`
if not config.is_encoder_decoder:
tokenizer_kwargs = {
"config": config if config.tokenizer_class is not None else None,
"tokenizer_type": config.model_type if config.tokenizer_class is None else None,
"unk_token": unk_token,
"pad_token": pad_token,
"word_delimiter_token": word_delimiter_token,
}
else:
tokenizer_kwargs = {}
# 5. Now we can instantiate the feature extractor, tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
# load feature_extractor and tokenizer
if is_text_target:
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
use_auth_token=data_args.use_auth_token,
**tokenizer_kwargs,
)
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, use_auth_token=data_args.use_auth_token
)
# adapt config
# (speech translation requires pre-configured seq2seq models)
if task_name != "covost2":
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_zero_infinity": model_args.ctc_zero_infinity,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"activation_dropout": model_args.activation_dropout,
}
)
if training_args.do_train:
if is_text_target:
config.pad_token_id = tokenizer.pad_token_id
config.vocab_size = len(tokenizer)
else:
label_to_id = {v: i for i, v in enumerate(label_list)}
config.label2id = label_to_id
config.id2label = {id: label for label, id in label_to_id.items()}
config.num_labels = num_labels
# create model
if target_column_name == "transcription":
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
use_auth_token=data_args.use_auth_token,
)
elif config.is_encoder_decoder:
model = AutoModelForSpeechSeq2Seq.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
use_auth_token=data_args.use_auth_token,
)
if model.config.decoder_start_token_id is None:
raise ValueError("Make sure that `config.decoder_start_token_id` is correctly defined")
else:
model = AutoModelForAudioClassification.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
use_auth_token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 6. Now we preprocess the datasets including loading the audio, resampling and normalization
# Thankfully, `datasets` takes care of automatically loading and resampling the audio,
# so that we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
# make sure that dataset decodes audio with correct sampling rate
dataset_sampling_rate = next(iter(raw_datasets.values())).features[data_args.audio_column_name].sampling_rate
if dataset_sampling_rate != feature_extractor.sampling_rate:
raw_datasets = raw_datasets.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=feature_extractor.sampling_rate)
)
# derive max & min input length for sample rate & max duration
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
min_input_length = data_args.min_duration_in_seconds * feature_extractor.sampling_rate
audio_column_name = data_args.audio_column_name
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
if is_text_target:
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
else:
batch["labels"] = batch[target_column_name]
batch["lang"] = batch["lang_id"]
return batch
with training_args.main_process_first(desc="dataset map preprocessing"):
vectorized_datasets = raw_datasets.map(
prepare_dataset,
remove_columns=next(iter(raw_datasets.values())).column_names,
num_proc=num_workers,
desc="preprocess datasets",
)
if training_args.do_train:
def is_audio_in_length_range(length):
return length > min_input_length and length < max_input_length
# filter data that is shorter than min_input_length
vectorized_datasets["train"] = vectorized_datasets["train"].filter(
is_audio_in_length_range,
num_proc=num_workers,
input_columns=["length"],
)
# 7. Next, we can prepare for the training step.
# Let's use the appropriate XTREME-S evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metric = load_metric("xtreme_s", task_name)
# for large datasets it is advised to run the preprocessing on a
# single machine first with ``args.preprocessing_only`` since there will mostly likely
# be a timeout when running the script in distributed mode.
# In a second step ``args.preprocessing_only`` can then be set to `False` to load the
# cached dataset
if data_args.preprocessing_only:
logger.info(f"Data preprocessing finished. Files cached at {vectorized_datasets.cache_files}")
return
def asr_logits_argmax(logits, labels):
return logits.argmax(dim=-1)
def compute_asr_metric(pred):
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred.predictions)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metric = eval_metric.compute(predictions=pred_str, references=label_str)
return metric
def compute_classification_metric(pred):
pred_ids = np.argmax(pred.predictions, axis=1)
metric = eval_metric.compute(predictions=pred_ids, references=pred.label_ids)
return metric
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
if is_text_target:
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
# wait until configs are saved in the main process before loading the processor
if training_args.local_rank != -1:
torch.distributed.barrier()
if is_text_target:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
else:
processor = AutoFeatureExtractor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
data_collator = SpeechDataCollatorWithPadding(processor=processor, pad_labels=is_text_target)
# Initialize Trainer
if target_column_name == "translation":
trainer = Seq2SeqTrainer(
model=model,
data_collator=data_collator,
args=training_args,
preprocess_logits_for_metrics=asr_logits_argmax if training_args.predict_with_generate else None,
compute_metrics=compute_asr_metric if training_args.predict_with_generate else None,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=feature_extractor,
)
else:
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
preprocess_logits_for_metrics=asr_logits_argmax if is_text_target else None,
compute_metrics=compute_asr_metric if is_text_target else compute_classification_metric,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=feature_extractor,
)
# 8. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples
if data_args.max_train_samples is not None
else len(vectorized_datasets["train"])
)
metrics["train_samples"] = min(max_train_samples, len(vectorized_datasets["train"]))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation on the test set
results = {}
if training_args.do_predict:
logger.info(f"*** Evaluating on the `{data_args.predict_split_name}` set ***")
if data_args.per_lang_metrics:
# separate the `test` dataset into language-specific subsets and compute metrics for each of them
metrics = {}
average_metrics = defaultdict(list)
for lang_id in range(len(lang_list)):
lang_name = lang_list[lang_id]
with training_args.main_process_first(desc="per-language dataset filter"):
lang_dataset = vectorized_datasets["predict"].filter(
lambda lang: lang == lang_id,
num_proc=num_workers,
input_columns=["lang"],
)
lang_metrics = trainer.evaluate(lang_dataset)
redundant_metrics = ["eval_runtime", "eval_samples_per_second", "eval_steps_per_second", "eval_epoch"]
for metric_name, value in lang_metrics.items():
average_metrics[metric_name].append(value)
if metric_name not in redundant_metrics:
metrics[f"{metric_name}_{lang_name}"] = value
for metric_name, value in average_metrics.items():
metrics[metric_name] = np.mean(value)
else:
metrics = trainer.evaluate(vectorized_datasets["predict"])
max_predict_samples = (
data_args.max_predict_samples
if data_args.max_predict_samples is not None
else len(vectorized_datasets["predict"])
)
metrics["predict_samples"] = min(max_predict_samples, len(vectorized_datasets["predict"]))
# make sure that the `predict` metrics end up in the log history for the model card
trainer.log(OrderedDict(sorted(metrics.items())))
trainer.log_metrics("predict", metrics)
trainer.save_metrics("predict", metrics)
# Write model card and (optionally) push to hub
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": task_name,
"tags": [task_name, data_args.dataset_name],
"dataset_args": (
f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split:"
f" {data_args.eval_split_name}, Predict split: {data_args.predict_split_name}"
),
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
"language": data_args.language,
}
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/xtreme-s/run_xtreme_s.py |
import datasets
import faiss
import numpy as np
import streamlit as st
import torch
from elasticsearch import Elasticsearch
from eli5_utils import (
embed_questions_for_retrieval,
make_qa_s2s_model,
qa_s2s_generate,
query_es_index,
query_qa_dense_index,
)
import transformers
from transformers import AutoModel, AutoModelForSeq2SeqLM, AutoTokenizer
MODEL_TYPE = "bart"
LOAD_DENSE_INDEX = True
@st.cache(allow_output_mutation=True)
def load_models():
if LOAD_DENSE_INDEX:
qar_tokenizer = AutoTokenizer.from_pretrained("yjernite/retribert-base-uncased")
qar_model = AutoModel.from_pretrained("yjernite/retribert-base-uncased").to("cuda:0")
_ = qar_model.eval()
else:
qar_tokenizer, qar_model = (None, None)
if MODEL_TYPE == "bart":
s2s_tokenizer = AutoTokenizer.from_pretrained("yjernite/bart_eli5")
s2s_model = AutoModelForSeq2SeqLM.from_pretrained("yjernite/bart_eli5").to("cuda:0")
save_dict = torch.load("seq2seq_models/eli5_bart_model_blm_2.pth")
s2s_model.load_state_dict(save_dict["model"])
_ = s2s_model.eval()
else:
s2s_tokenizer, s2s_model = make_qa_s2s_model(
model_name="t5-small", from_file="seq2seq_models/eli5_t5_model_1024_4.pth", device="cuda:0"
)
return (qar_tokenizer, qar_model, s2s_tokenizer, s2s_model)
@st.cache(allow_output_mutation=True)
def load_indexes():
if LOAD_DENSE_INDEX:
faiss_res = faiss.StandardGpuResources()
wiki40b_passages = datasets.load_dataset(path="wiki_snippets", name="wiki40b_en_100_0")["train"]
wiki40b_passage_reps = np.memmap(
"wiki40b_passages_reps_32_l-8_h-768_b-512-512.dat",
dtype="float32",
mode="r",
shape=(wiki40b_passages.num_rows, 128),
)
wiki40b_index_flat = faiss.IndexFlatIP(128)
wiki40b_gpu_index_flat = faiss.index_cpu_to_gpu(faiss_res, 1, wiki40b_index_flat)
wiki40b_gpu_index_flat.add(wiki40b_passage_reps) # TODO fix for larger GPU
else:
wiki40b_passages, wiki40b_gpu_index_flat = (None, None)
es_client = Elasticsearch([{"host": "localhost", "port": "9200"}])
return (wiki40b_passages, wiki40b_gpu_index_flat, es_client)
@st.cache(allow_output_mutation=True)
def load_train_data():
eli5 = datasets.load_dataset("eli5", name="LFQA_reddit")
eli5_train = eli5["train_eli5"]
eli5_train_q_reps = np.memmap(
"eli5_questions_reps.dat", dtype="float32", mode="r", shape=(eli5_train.num_rows, 128)
)
eli5_train_q_index = faiss.IndexFlatIP(128)
eli5_train_q_index.add(eli5_train_q_reps)
return (eli5_train, eli5_train_q_index)
passages, gpu_dense_index, es_client = load_indexes()
qar_tokenizer, qar_model, s2s_tokenizer, s2s_model = load_models()
eli5_train, eli5_train_q_index = load_train_data()
def find_nearest_training(question, n_results=10):
q_rep = embed_questions_for_retrieval([question], qar_tokenizer, qar_model)
D, I = eli5_train_q_index.search(q_rep, n_results)
nn_examples = [eli5_train[int(i)] for i in I[0]]
return nn_examples
def make_support(question, source="wiki40b", method="dense", n_results=10):
if source == "none":
support_doc, hit_lst = (" <P> ".join(["" for _ in range(11)]).strip(), [])
else:
if method == "dense":
support_doc, hit_lst = query_qa_dense_index(
question, qar_model, qar_tokenizer, passages, gpu_dense_index, n_results
)
else:
support_doc, hit_lst = query_es_index(
question,
es_client,
index_name="english_wiki40b_snippets_100w",
n_results=n_results,
)
support_list = [
(res["article_title"], res["section_title"].strip(), res["score"], res["passage_text"]) for res in hit_lst
]
question_doc = "question: {} context: {}".format(question, support_doc)
return question_doc, support_list
@st.cache(
hash_funcs={
torch.Tensor: (lambda _: None),
transformers.models.bart.tokenization_bart.BartTokenizer: (lambda _: None),
}
)
def answer_question(
question_doc, s2s_model, s2s_tokenizer, min_len=64, max_len=256, sampling=False, n_beams=2, top_p=0.95, temp=0.8
):
with torch.no_grad():
answer = qa_s2s_generate(
question_doc,
s2s_model,
s2s_tokenizer,
num_answers=1,
num_beams=n_beams,
min_len=min_len,
max_len=max_len,
do_sample=sampling,
temp=temp,
top_p=top_p,
top_k=None,
max_input_length=1024,
device="cuda:0",
)[0]
return (answer, support_list)
st.title("Long Form Question Answering with ELI5")
# Start sidebar
header_html = "<img src='https://huggingface.co/front/assets/huggingface_logo.svg'>"
header_full = """
<html>
<head>
<style>
.img-container {
padding-left: 90px;
padding-right: 90px;
padding-top: 50px;
padding-bottom: 50px;
background-color: #f0f3f9;
}
</style>
</head>
<body>
<span class="img-container"> <!-- Inline parent element -->
%s
</span>
</body>
</html>
""" % (
header_html,
)
st.sidebar.markdown(
header_full,
unsafe_allow_html=True,
)
# Long Form QA with ELI5 and Wikipedia
description = """
This demo presents a model trained to [provide long-form answers to open-domain questions](https://yjernite.github.io/lfqa.html).
First, a document retriever fetches a set of relevant Wikipedia passages given the question from the [Wiki40b](https://research.google/pubs/pub49029/) dataset,
a pre-processed fixed snapshot of Wikipedia.
"""
st.sidebar.markdown(description, unsafe_allow_html=True)
action_list = [
"Answer the question",
"View the retrieved document only",
"View the most similar ELI5 question and answer",
"Show me everything, please!",
]
demo_options = st.sidebar.checkbox("Demo options")
if demo_options:
action_st = st.sidebar.selectbox(
"",
action_list,
index=3,
)
action = action_list.index(action_st)
show_type = st.sidebar.selectbox(
"",
["Show full text of passages", "Show passage section titles"],
index=0,
)
show_passages = show_type == "Show full text of passages"
else:
action = 3
show_passages = True
retrieval_options = st.sidebar.checkbox("Retrieval options")
if retrieval_options:
retriever_info = """
### Information retriever options
The **sparse** retriever uses ElasticSearch, while the **dense** retriever uses max-inner-product search between a question and passage embedding
trained using the [ELI5](https://arxiv.org/abs/1907.09190) questions-answer pairs.
The answer is then generated by sequence to sequence model which takes the question and retrieved document as input.
"""
st.sidebar.markdown(retriever_info)
wiki_source = st.sidebar.selectbox("Which Wikipedia format should the model use?", ["wiki40b", "none"])
index_type = st.sidebar.selectbox("Which Wikipedia indexer should the model use?", ["dense", "sparse", "mixed"])
else:
wiki_source = "wiki40b"
index_type = "dense"
sampled = "beam"
n_beams = 2
min_len = 64
max_len = 256
top_p = None
temp = None
generate_options = st.sidebar.checkbox("Generation options")
if generate_options:
generate_info = """
### Answer generation options
The sequence-to-sequence model was initialized with [BART](https://huggingface.co/facebook/bart-large)
weights and fine-tuned on the ELI5 QA pairs and retrieved documents. You can use the model for greedy decoding with
**beam** search, or **sample** from the decoder's output probabilities.
"""
st.sidebar.markdown(generate_info)
sampled = st.sidebar.selectbox("Would you like to use beam search or sample an answer?", ["beam", "sampled"])
min_len = st.sidebar.slider(
"Minimum generation length", min_value=8, max_value=256, value=64, step=8, format=None, key=None
)
max_len = st.sidebar.slider(
"Maximum generation length", min_value=64, max_value=512, value=256, step=16, format=None, key=None
)
if sampled == "beam":
n_beams = st.sidebar.slider("Beam size", min_value=1, max_value=8, value=2, step=None, format=None, key=None)
else:
top_p = st.sidebar.slider(
"Nucleus sampling p", min_value=0.1, max_value=1.0, value=0.95, step=0.01, format=None, key=None
)
temp = st.sidebar.slider(
"Temperature", min_value=0.1, max_value=1.0, value=0.7, step=0.01, format=None, key=None
)
n_beams = None
# start main text
questions_list = [
"<MY QUESTION>",
"How do people make chocolate?",
"Why do we get a fever when we are sick?",
"How can different animals perceive different colors?",
"What is natural language processing?",
"What's the best way to treat a sunburn?",
"What exactly are vitamins ?",
"How does nuclear energy provide electricity?",
"What's the difference between viruses and bacteria?",
"Why are flutes classified as woodwinds when most of them are made out of metal ?",
"Why do people like drinking coffee even though it tastes so bad?",
"What happens when wine ages? How does it make the wine taste better?",
"If an animal is an herbivore, where does it get the protein that it needs to survive if it only eats grass?",
"How can we set a date to the beginning or end of an artistic period? Doesn't the change happen gradually?",
"How does New Zealand have so many large bird predators?",
]
question_s = st.selectbox(
"What would you like to ask? ---- select <MY QUESTION> to enter a new query",
questions_list,
index=1,
)
if question_s == "<MY QUESTION>":
question = st.text_input("Enter your question here:", "")
else:
question = question_s
if st.button("Show me!"):
if action in [0, 1, 3]:
if index_type == "mixed":
_, support_list_dense = make_support(question, source=wiki_source, method="dense", n_results=10)
_, support_list_sparse = make_support(question, source=wiki_source, method="sparse", n_results=10)
support_list = []
for res_d, res_s in zip(support_list_dense, support_list_sparse):
if tuple(res_d) not in support_list:
support_list += [tuple(res_d)]
if tuple(res_s) not in support_list:
support_list += [tuple(res_s)]
support_list = support_list[:10]
question_doc = "<P> " + " <P> ".join([res[-1] for res in support_list])
else:
question_doc, support_list = make_support(question, source=wiki_source, method=index_type, n_results=10)
if action in [0, 3]:
answer, support_list = answer_question(
question_doc,
s2s_model,
s2s_tokenizer,
min_len=min_len,
max_len=int(max_len),
sampling=(sampled == "sampled"),
n_beams=n_beams,
top_p=top_p,
temp=temp,
)
st.markdown("### The model generated answer is:")
st.write(answer)
if action in [0, 1, 3] and wiki_source != "none":
st.markdown("--- \n ### The model is drawing information from the following Wikipedia passages:")
for i, res in enumerate(support_list):
wiki_url = "https://en.wikipedia.org/wiki/{}".format(res[0].replace(" ", "_"))
sec_titles = res[1].strip()
if sec_titles == "":
sections = "[{}]({})".format(res[0], wiki_url)
else:
sec_list = sec_titles.split(" & ")
sections = " & ".join(
["[{}]({}#{})".format(sec.strip(), wiki_url, sec.strip().replace(" ", "_")) for sec in sec_list]
)
st.markdown(
"{0:02d} - **Article**: {1:<18} <br> _Section_: {2}".format(i + 1, res[0], sections),
unsafe_allow_html=True,
)
if show_passages:
st.write(
'> <span style="font-family:arial; font-size:10pt;">' + res[-1] + "</span>", unsafe_allow_html=True
)
if action in [2, 3]:
nn_train_list = find_nearest_training(question)
train_exple = nn_train_list[0]
st.markdown(
"--- \n ### The most similar question in the ELI5 training set was: \n\n {}".format(train_exple["title"])
)
answers_st = [
"{}. {}".format(i + 1, " \n".join([line.strip() for line in ans.split("\n") if line.strip() != ""]))
for i, (ans, sc) in enumerate(zip(train_exple["answers"]["text"], train_exple["answers"]["score"]))
if i == 0 or sc > 2
]
st.markdown("##### Its answers were: \n\n {}".format("\n".join(answers_st)))
disclaimer = """
---
**Disclaimer**
*The intent of this app is to provide some (hopefully entertaining) insights into the behavior of a current LFQA system.
Evaluating biases of such a model and ensuring factual generations are still very much open research problems.
Therefore, until some significant progress is achieved, we caution against using the generated answers for practical purposes.*
"""
st.sidebar.markdown(disclaimer, unsafe_allow_html=True)
| transformers-main | examples/research_projects/longform-qa/eli5_app.py |
import functools
import math
import os # noqa: F401
from random import choice, randint
from time import time
import datasets # noqa: F401
import faiss # noqa: F401
import numpy as np
import pandas as pd
import torch
import torch.utils.checkpoint as checkpoint
from elasticsearch import Elasticsearch # noqa: F401
from elasticsearch.helpers import bulk, streaming_bulk # noqa: F401
from torch import nn
from torch.utils.data import DataLoader, Dataset, RandomSampler, SequentialSampler
from tqdm import tqdm
from transformers import AdamW, AutoModel, AutoModelForSeq2SeqLM, AutoTokenizer, get_linear_schedule_with_warmup
pd.set_option("display.max_colwidth", None)
###############
# Sparse index
###############
def make_es_index_snippets(es_client, passages_dset, index_name="english_wiki_kilt_snippets_100w"):
index_config = {
"settings": {
"number_of_shards": 1,
"analysis": {"analyzer": {"stop_standard": {"type": "standard", " stopwords": "_english_"}}},
},
"mappings": {
"properties": {
"article_title": {"type": "text", "analyzer": "standard", "similarity": "BM25"},
"section_title": {"type": "text", "analyzer": "standard", "similarity": "BM25"},
"passage_text": {"type": "text", "analyzer": "standard", "similarity": "BM25"},
}
},
}
es_client.indices.create(index=index_name, body=index_config)
number_of_docs = passages_dset.num_rows
progress = tqdm(unit="docs", total=number_of_docs)
successes = 0
def passage_generator():
for passage in passages_dset:
yield passage
# create the ES index
for ok, action in streaming_bulk(
client=es_client,
index=index_name,
actions=passage_generator(),
):
progress.update(1)
successes += ok
print("Indexed %d documents" % (successes,))
def query_es_index(question, es_client, index_name="english_wiki_kilt_snippets_100w", n_results=10, min_length=20):
q = question.lower()
banned = ["how", "why", "what", "where", "which", "do", "does", "is", "?", "eli5", "eli5:"]
q = " ".join([w for w in q.split() if w not in banned])
response = es_client.search(
index=index_name,
body={
"query": {
"multi_match": {
"query": q,
"fields": ["article_title", "section_title", "passage_text^2"],
"type": "cross_fields",
}
},
"size": 2 * n_results,
},
)
hits = response["hits"]["hits"]
support_doc = "<P> " + " <P> ".join([hit["_source"]["passage_text"] for hit in hits])
res_list = [{k: hit["_source"][k] for k in hit["_source"] if k != "passage_text"} for hit in hits]
for r, hit in zip(res_list, hits):
r["passage_id"] = hit["_id"]
r["score"] = hit["_score"]
r["passage_text"] = hit["_source"]["passage_text"]
res_list = [res for res in res_list if len(res["passage_text"].split()) > min_length][:n_results]
return support_doc, res_list
###############
# ELI5 retriever training
###############
class ELI5DatasetQARetriver(Dataset):
def __init__(self, examples_array, extra_answer_threshold=3, min_answer_length=64, training=True, n_samples=None):
self.data = examples_array
self.answer_thres = extra_answer_threshold
self.min_length = min_answer_length
self.training = training
self.n_samples = self.data.num_rows if n_samples is None else n_samples
def __len__(self):
return self.n_samples
def make_example(self, idx):
example = self.data[idx]
question = example["title"]
if self.training:
answers = [a for i, (a, sc) in enumerate(zip(example["answers"]["text"], example["answers"]["score"]))]
answer_tab = choice(answers).split(" ")
start_idx = randint(0, max(0, len(answer_tab) - self.min_length))
answer_span = " ".join(answer_tab[start_idx:])
else:
answer_span = example["answers"]["text"][0]
return (question, answer_span)
def __getitem__(self, idx):
return self.make_example(idx % self.data.num_rows)
class RetrievalQAEmbedder(nn.Module):
def __init__(self, sent_encoder, dim):
super(RetrievalQAEmbedder, self).__init__()
self.sent_encoder = sent_encoder
self.output_dim = 128
self.project_q = nn.Linear(dim, self.output_dim, bias=False)
self.project_a = nn.Linear(dim, self.output_dim, bias=False)
self.ce_loss = nn.CrossEntropyLoss(reduction="mean")
def embed_sentences_checkpointed(self, input_ids, attention_mask, checkpoint_batch_size=-1):
# reproduces BERT forward pass with checkpointing
if checkpoint_batch_size < 0 or input_ids.shape[0] < checkpoint_batch_size:
return self.sent_encoder(input_ids, attention_mask=attention_mask)[1]
else:
# prepare implicit variables
device = input_ids.device
input_shape = input_ids.size()
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
head_mask = [None] * self.sent_encoder.config.num_hidden_layers
extended_attention_mask: torch.Tensor = self.sent_encoder.get_extended_attention_mask(
attention_mask, input_shape
)
# define function for checkpointing
def partial_encode(*inputs):
encoder_outputs = self.sent_encoder.encoder(
inputs[0],
attention_mask=inputs[1],
head_mask=head_mask,
)
sequence_output = encoder_outputs[0]
pooled_output = self.sent_encoder.pooler(sequence_output)
return pooled_output
# run embedding layer on everything at once
embedding_output = self.sent_encoder.embeddings(
input_ids=input_ids, position_ids=None, token_type_ids=token_type_ids, inputs_embeds=None
)
# run encoding and pooling on one mini-batch at a time
pooled_output_list = []
for b in range(math.ceil(input_ids.shape[0] / checkpoint_batch_size)):
b_embedding_output = embedding_output[b * checkpoint_batch_size : (b + 1) * checkpoint_batch_size]
b_attention_mask = extended_attention_mask[b * checkpoint_batch_size : (b + 1) * checkpoint_batch_size]
pooled_output = checkpoint.checkpoint(partial_encode, b_embedding_output, b_attention_mask)
pooled_output_list.append(pooled_output)
return torch.cat(pooled_output_list, dim=0)
def embed_questions(self, q_ids, q_mask, checkpoint_batch_size=-1):
q_reps = self.embed_sentences_checkpointed(q_ids, q_mask, checkpoint_batch_size)
return self.project_q(q_reps)
def embed_answers(self, a_ids, a_mask, checkpoint_batch_size=-1):
a_reps = self.embed_sentences_checkpointed(a_ids, a_mask, checkpoint_batch_size)
return self.project_a(a_reps)
def forward(self, q_ids, q_mask, a_ids, a_mask, checkpoint_batch_size=-1):
device = q_ids.device
q_reps = self.embed_questions(q_ids, q_mask, checkpoint_batch_size)
a_reps = self.embed_answers(a_ids, a_mask, checkpoint_batch_size)
compare_scores = torch.mm(q_reps, a_reps.t())
loss_qa = self.ce_loss(compare_scores, torch.arange(compare_scores.shape[1]).to(device))
loss_aq = self.ce_loss(compare_scores.t(), torch.arange(compare_scores.shape[0]).to(device))
loss = (loss_qa + loss_aq) / 2
return loss
def make_qa_retriever_model(model_name="google/bert_uncased_L-8_H-512_A-8", from_file=None, device="cuda:0"):
tokenizer = AutoTokenizer.from_pretrained(model_name)
bert_model = AutoModel.from_pretrained(model_name).to(device)
# run bert_model on a dummy batch to get output dimension
d_ids = torch.LongTensor(
[[bert_model.config.bos_token_id if bert_model.config.bos_token_id is not None else 1]]
).to(device)
d_mask = torch.LongTensor([[1]]).to(device)
sent_dim = bert_model(d_ids, attention_mask=d_mask)[1].shape[-1]
qa_embedder = RetrievalQAEmbedder(bert_model, sent_dim).to(device)
if from_file is not None:
param_dict = torch.load(from_file) # has model weights, optimizer, and scheduler states
qa_embedder.load_state_dict(param_dict["model"])
return tokenizer, qa_embedder
def make_qa_retriever_batch(qa_list, tokenizer, max_len=64, device="cuda:0"):
q_ls = [q for q, a in qa_list]
a_ls = [a for q, a in qa_list]
q_toks = tokenizer(q_ls, max_length=max_len, padding="max_length", truncation=True)
q_ids, q_mask = (
torch.LongTensor(q_toks["input_ids"]).to(device),
torch.LongTensor(q_toks["attention_mask"]).to(device),
)
a_toks = tokenizer(a_ls, max_length=max_len, padding="max_length", truncation=True)
a_ids, a_mask = (
torch.LongTensor(a_toks["input_ids"]).to(device),
torch.LongTensor(a_toks["attention_mask"]).to(device),
)
return (q_ids, q_mask, a_ids, a_mask)
def train_qa_retriever_epoch(model, dataset, tokenizer, optimizer, scheduler, args, e=0):
model.train()
# make iterator
train_sampler = RandomSampler(dataset)
model_collate_fn = functools.partial(
make_qa_retriever_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
for step, batch in enumerate(epoch_iterator):
q_ids, q_mask, a_ids, a_mask = batch
pre_loss = model(q_ids, q_mask, a_ids, a_mask, checkpoint_batch_size=args.checkpoint_batch_size)
loss = pre_loss.sum()
# optimizer
loss.backward()
optimizer.step()
scheduler.step()
model.zero_grad()
# some printing within the epoch
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0 or step == 1:
print(
"{:2d} {:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
e,
step,
len(dataset) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
loc_loss = 0
loc_steps = 0
def train_qa_retriever_joint_epoch(model, dataset_list, tokenizer, optimizer, scheduler, args, e=0):
model.train()
model_collate_fn = functools.partial(
make_qa_retriever_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
# make iterator
train_samplers = [RandomSampler(dataset) for dataset in dataset_list]
data_loaders = [
DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
for dataset, train_sampler in zip(dataset_list, train_samplers)
]
iterators = [iter(dloader) for dloader in data_loaders]
joint_iter = zip(*iterators)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
for step, (batches,) in enumerate(zip(joint_iter)):
for batch in batches:
q_ids, q_mask, a_ids, a_mask = batch
loss = model(q_ids, q_mask, a_ids, a_mask, checkpoint_batch_size=args.checkpoint_batch_size)
# optimizer
loss.backward()
optimizer.step()
scheduler.step()
model.zero_grad()
# some printing within the epoch
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0:
print(
"{:2d} {:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
e,
step,
len(dataset_list[0]) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
loc_loss = 0
loc_steps = 0
def evaluate_qa_retriever(model, dataset, tokenizer, args):
model.eval()
# make iterator
eval_sampler = SequentialSampler(dataset)
model_collate_fn = functools.partial(
make_qa_retriever_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=eval_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
tot_loss = 0.0
with torch.no_grad():
for step, batch in enumerate(epoch_iterator):
q_ids, q_mask, a_ids, a_mask = batch
loss = model(q_ids, q_mask, a_ids, a_mask)
tot_loss += loss.item()
return tot_loss / (step + 1)
def train_qa_retriever(qar_model, qar_tokenizer, qar_train_dset, qar_valid_dset, qar_args):
qar_optimizer = AdamW(qar_model.parameters(), lr=qar_args.learning_rate, eps=1e-8)
qar_scheduler = get_linear_schedule_with_warmup(
qar_optimizer,
num_warmup_steps=100,
num_training_steps=(qar_args.num_epochs + 1) * math.ceil(len(qar_train_dset) / qar_args.batch_size),
)
for e in range(qar_args.num_epochs):
train_qa_retriever_epoch(qar_model, qar_train_dset, qar_tokenizer, qar_optimizer, qar_scheduler, qar_args, e)
m_save_dict = {
"model": qar_model.state_dict(),
"optimizer": qar_optimizer.state_dict(),
"scheduler": qar_scheduler.state_dict(),
}
print("Saving model {}".format(qar_args.model_save_name))
torch.save(m_save_dict, "{}_{}.pth".format(qar_args.model_save_name, e))
eval_loss = evaluate_qa_retriever(qar_model, qar_valid_dset, qar_tokenizer, qar_args)
print("Evaluation loss epoch {:4d}: {:.3f}".format(e, eval_loss))
###############
# ELI5 seq2seq model training
###############
class ELI5DatasetS2S(Dataset):
def __init__(
self, examples_array, make_doc_fun=None, extra_answer_threshold=3, document_cache=None, training=True
):
self.training = training
self.data = examples_array
self.make_doc_function = make_doc_fun
self.document_cache = {} if document_cache is None else document_cache
assert not (make_doc_fun is None and document_cache is None)
# make index of specific question-answer pairs from multi-answers
if self.training:
self.qa_id_list = [
(i, j)
for i, qa in enumerate(self.data)
for j, (a, sc) in enumerate(zip(qa["answers"]["text"], qa["answers"]["score"]))
if j == 0 or sc >= extra_answer_threshold
]
else:
self.qa_id_list = [(i, 0) for i in range(self.data.num_rows)]
def __len__(self):
return len(self.qa_id_list)
def make_example(self, idx):
i, j = self.qa_id_list[idx]
example = self.data[i]
question = example["title"] + " " + example["selftext"]
answer = example["answers"]["text"][j]
q_id = example["q_id"]
if self.make_doc_function is not None:
self.document_cache[q_id] = self.document_cache.get(q_id, self.make_doc_function(example["title"]))
document = self.document_cache[q_id]
in_st = "question: {} context: {}".format(
question.lower().replace(" --t--", "").strip(),
document.lower().strip(),
)
out_st = answer
return (in_st, out_st)
def __getitem__(self, idx):
return self.make_example(idx)
def make_qa_s2s_model(model_name="facebook/bart-large", from_file=None, device="cuda:0"):
tokenizer = AutoTokenizer.from_pretrained(model_name)
model = AutoModelForSeq2SeqLM.from_pretrained(model_name).to(device)
if from_file is not None:
param_dict = torch.load(from_file) # has model weights, optimizer, and scheduler states
model.load_state_dict(param_dict["model"])
return tokenizer, model
def make_qa_s2s_batch(qa_list, tokenizer, max_len=64, max_a_len=360, device="cuda:0"):
q_ls = [q for q, a in qa_list]
a_ls = [a for q, a in qa_list]
q_toks = tokenizer(q_ls, max_length=max_len, padding="max_length", truncation=True)
q_ids, q_mask = (
torch.LongTensor(q_toks["input_ids"]).to(device),
torch.LongTensor(q_toks["attention_mask"]).to(device),
)
a_toks = tokenizer(a_ls, max_length=min(max_len, max_a_len), padding="max_length", truncation=True)
a_ids, a_mask = (
torch.LongTensor(a_toks["input_ids"]).to(device),
torch.LongTensor(a_toks["attention_mask"]).to(device),
)
lm_labels = a_ids[:, 1:].contiguous().clone()
lm_labels[a_mask[:, 1:].contiguous() == 0] = -100
model_inputs = {
"input_ids": q_ids,
"attention_mask": q_mask,
"decoder_input_ids": a_ids[:, :-1].contiguous(),
"lm_labels": lm_labels,
}
return model_inputs
def train_qa_s2s_epoch(model, dataset, tokenizer, optimizer, scheduler, args, e=0, curriculum=False):
model.train()
# make iterator
if curriculum:
train_sampler = SequentialSampler(dataset)
else:
train_sampler = RandomSampler(dataset)
model_collate_fn = functools.partial(
make_qa_s2s_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
for step, batch_inputs in enumerate(epoch_iterator):
pre_loss = model(**batch_inputs)[0]
loss = pre_loss.sum() / pre_loss.shape[0]
loss.backward()
# optimizer
if step % args.backward_freq == 0:
optimizer.step()
scheduler.step()
model.zero_grad()
# some printing within the epoch
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0 or step == 1:
print(
"{:2d} {:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
e,
step,
len(dataset) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
loc_loss = 0
loc_steps = 0
def eval_qa_s2s_epoch(model, dataset, tokenizer, args):
model.eval()
# make iterator
train_sampler = SequentialSampler(dataset)
model_collate_fn = functools.partial(
make_qa_s2s_batch, tokenizer=tokenizer, max_len=args.max_length, device="cuda:0"
)
data_loader = DataLoader(dataset, batch_size=args.batch_size, sampler=train_sampler, collate_fn=model_collate_fn)
epoch_iterator = tqdm(data_loader, desc="Iteration", disable=True)
# accumulate loss since last print
loc_steps = 0
loc_loss = 0.0
st_time = time()
with torch.no_grad():
for step, batch_inputs in enumerate(epoch_iterator):
pre_loss = model(**batch_inputs)[0]
loss = pre_loss.sum() / pre_loss.shape[0]
loc_loss += loss.item()
loc_steps += 1
if step % args.print_freq == 0:
print(
"{:5d} of {:5d} \t L: {:.3f} \t -- {:.3f}".format(
step,
len(dataset) // args.batch_size,
loc_loss / loc_steps,
time() - st_time,
)
)
print(
"Total \t L: {:.3f} \t -- {:.3f}".format(
loc_loss / loc_steps,
time() - st_time,
)
)
def train_qa_s2s(qa_s2s_model, qa_s2s_tokenizer, s2s_train_dset, s2s_valid_dset, s2s_args):
s2s_optimizer = AdamW(qa_s2s_model.parameters(), lr=s2s_args.learning_rate, eps=1e-8)
s2s_scheduler = get_linear_schedule_with_warmup(
s2s_optimizer,
num_warmup_steps=400,
num_training_steps=(s2s_args.num_epochs + 1) * math.ceil(len(s2s_train_dset) / s2s_args.batch_size),
)
for e in range(s2s_args.num_epochs):
train_qa_s2s_epoch(
qa_s2s_model,
s2s_train_dset,
qa_s2s_tokenizer,
s2s_optimizer,
s2s_scheduler,
s2s_args,
e,
curriculum=(e == 0),
)
m_save_dict = {
"model": qa_s2s_model.state_dict(),
"optimizer": s2s_optimizer.state_dict(),
"scheduler": s2s_scheduler.state_dict(),
}
print("Saving model {}".format(s2s_args.model_save_name))
eval_qa_s2s_epoch(qa_s2s_model, s2s_valid_dset, qa_s2s_tokenizer, s2s_args)
torch.save(m_save_dict, "{}_{}.pth".format(s2s_args.model_save_name, e))
# generate answer from input "question: ... context: <p> ..."
def qa_s2s_generate(
question_doc,
qa_s2s_model,
qa_s2s_tokenizer,
num_answers=1,
num_beams=None,
min_len=64,
max_len=256,
do_sample=False,
temp=1.0,
top_p=None,
top_k=None,
max_input_length=512,
device="cuda:0",
):
model_inputs = make_qa_s2s_batch(
[(question_doc, "A")],
qa_s2s_tokenizer,
max_input_length,
device=device,
)
n_beams = num_answers if num_beams is None else max(num_beams, num_answers)
generated_ids = qa_s2s_model.generate(
input_ids=model_inputs["input_ids"],
attention_mask=model_inputs["attention_mask"],
min_length=min_len,
max_length=max_len,
do_sample=do_sample,
early_stopping=True,
num_beams=1 if do_sample else n_beams,
temperature=temp,
top_k=top_k,
top_p=top_p,
eos_token_id=qa_s2s_tokenizer.eos_token_id,
no_repeat_ngram_size=3,
num_return_sequences=num_answers,
decoder_start_token_id=qa_s2s_tokenizer.bos_token_id,
)
return [qa_s2s_tokenizer.decode(ans_ids, skip_special_tokens=True).strip() for ans_ids in generated_ids]
###############
# ELI5-trained retrieval model usage
###############
def embed_passages_for_retrieval(passages, tokenizer, qa_embedder, max_length=128, device="cuda:0"):
a_toks = tokenizer(passages, max_length=max_length, padding="max_length", truncation=True)
a_ids, a_mask = (
torch.LongTensor(a_toks["input_ids"]).to(device),
torch.LongTensor(a_toks["attention_mask"]).to(device),
)
with torch.no_grad():
a_reps = qa_embedder.embed_answers(a_ids, a_mask).cpu().type(torch.float)
return a_reps.numpy()
def embed_questions_for_retrieval(q_ls, tokenizer, qa_embedder, device="cuda:0"):
q_toks = tokenizer(q_ls, max_length=128, padding="max_length", truncation=True)
q_ids, q_mask = (
torch.LongTensor(q_toks["input_ids"]).to(device),
torch.LongTensor(q_toks["attention_mask"]).to(device),
)
with torch.no_grad():
q_reps = qa_embedder.embed_questions(q_ids, q_mask).cpu().type(torch.float)
return q_reps.numpy()
def make_qa_dense_index(
qa_embedder,
tokenizer,
passages_dset,
batch_size=512,
max_length=128,
index_name="kilt_passages_reps.dat",
dtype="float32",
device="cuda:0",
):
st_time = time()
fp = np.memmap(index_name, dtype=dtype, mode="w+", shape=(passages_dset.num_rows, 128))
n_batches = math.ceil(passages_dset.num_rows / batch_size)
for i in range(n_batches):
passages = list(passages_dset[i * batch_size : (i + 1) * batch_size]["passage_text"])
reps = embed_passages_for_retrieval(passages, tokenizer, qa_embedder, max_length, device)
fp[i * batch_size : (i + 1) * batch_size] = reps
if i % 50 == 0:
print(i, time() - st_time)
def evaluate_retriever(qa_list, retriever_func, scoring_func, n_ret=10, verbose=False):
total_retriever_time = 0.0
total_retriever_score = 0.0
st_time = time()
for i, (question, answer) in enumerate(qa_list):
r_time = time()
retrieved_passages = retriever_func(question, n_ret)
total_retriever_time += time() - r_time
total_retriever_score += scoring_func(retrieved_passages, answer)
if verbose and ((i + 1) % 500 == 0 or i <= 1):
print(
"{:03d}: S-{:.4f} T-{:.4f} | {:.2f}".format(
i + 1, total_retriever_score / (i + 1), total_retriever_time / (i + 1), time() - st_time
)
)
return {"idf_recall": total_retriever_score / (i + 1), "retrieval_time": total_retriever_time / (i + 1)}
# build a support document for the question out of Wikipedia snippets
def query_qa_dense_index(
question, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10, min_length=20, device="cuda:0"
):
q_rep = embed_questions_for_retrieval([question], tokenizer, qa_embedder, device=device)
D, I = wiki_index.search(q_rep, 2 * n_results)
res_passages = [wiki_passages[int(i)] for i in I[0]]
support_doc = "<P> " + " <P> ".join([p["passage_text"] for p in res_passages])
res_list = [{k: p[k] for k in wiki_passages.column_names} for p in res_passages]
res_list = [res for res in res_list if len(res["passage_text"].split()) > min_length][:n_results]
for r, sc in zip(res_list, D[0]):
r["score"] = float(sc)
return support_doc, res_list
def batch_query_qa_dense_index(questions, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10):
q_rep = embed_questions_for_retrieval(questions, tokenizer, qa_embedder)
D, I = wiki_index.search(q_rep, n_results)
res_passages_lst = [[wiki_passages[int(i)] for i in i_lst] for i_lst in I]
support_doc_lst = [
"<P> " + " <P> ".join([p["passage_text"] for p in res_passages]) for res_passages in res_passages_lst
]
all_res_lists = []
for res_passages, dl in zip(res_passages_lst, D):
res_list = [{k: p[k] for k in wiki_passages.column_names} for p in res_passages]
for r, sc in zip(res_list, dl):
r["score"] = float(sc)
all_res_lists += [res_list[:]]
return support_doc_lst, all_res_lists
# find nearest neighbors of an answer or declarative text in Wikipedia snippets
def query_qa_dense_index_nn(passage, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10, min_length=20):
a_rep = embed_passages_for_retrieval([passage], tokenizer, qa_embedder)
D, I = wiki_index.search(a_rep, 2 * n_results)
res_passages = [wiki_passages[int(i)] for i in I[0]]
support_doc = "<P> " + " <P> ".join([p["passage_text"] for p in res_passages])
res_list = [{k: p[k] for k in wiki_passages.column_names} for p in res_passages]
res_list = [res for res in res_list if len(res["passage_text"].split()) > min_length][:n_results]
for r, sc, i in zip(res_list, D[0], I[0]):
r["passage_id"] = int(i)
r["score"] = float(sc)
return support_doc, res_list
def batch_query_qa_dense_index_nn(passages, qa_embedder, tokenizer, wiki_passages, wiki_index, n_results=10):
a_reps = embed_passages_for_retrieval(passages, tokenizer, qa_embedder)
D, I = wiki_index.search(a_reps, n_results)
res_passages_lst = [[wiki_passages[int(i)] for i in i_lst] for i_lst in I]
support_doc_lst = [
"<P> " + " <P> ".join([p["passage_text"] for p in res_passages]) for res_passages in res_passages_lst
]
all_res_lists = []
for res_passages, dl, il in zip(res_passages_lst, D, I):
res_list = [{k: p[k] for k in wiki_passages.column_names} for p in res_passages]
for r, sc, i in zip(res_list, dl, il):
r["passage_id"] = int(i)
r["score"] = float(sc)
all_res_lists += [res_list[:]]
return support_doc_lst, all_res_lists
| transformers-main | examples/research_projects/longform-qa/eli5_utils.py |
import argparse
import logging
import sys
from unittest.mock import patch
import run_glue_with_pabee
from transformers.testing_utils import TestCasePlus
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse.ArgumentParser()
parser.add_argument("-f")
args = parser.parse_args()
return args.f
class PabeeTests(TestCasePlus):
def test_run_glue(self):
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_glue_with_pabee.py
--model_type albert
--model_name_or_path albert-base-v2
--data_dir ./tests/fixtures/tests_samples/MRPC/
--output_dir {tmp_dir}
--overwrite_output_dir
--task_name mrpc
--do_train
--do_eval
--per_gpu_train_batch_size=2
--per_gpu_eval_batch_size=1
--learning_rate=2e-5
--max_steps=50
--warmup_steps=2
--seed=42
--max_seq_length=128
""".split()
with patch.object(sys, "argv", testargs):
result = run_glue_with_pabee.main()
for value in result.values():
self.assertGreaterEqual(value, 0.75)
| transformers-main | examples/research_projects/bert-loses-patience/test_run_glue_with_pabee.py |
# coding=utf-8
# Copyright 2020 The Google AI Language Team Authors, The HuggingFace Inc. team and Microsoft Corporation.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Training and inference using the library models for sequence classification on GLUE (Bert, Albert) with PABEE."""
import argparse
import glob
import json
import logging
import os
import random
import numpy as np
import torch
from pabee.modeling_pabee_albert import AlbertForSequenceClassificationWithPabee
from pabee.modeling_pabee_bert import BertForSequenceClassificationWithPabee
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from transformers import (
WEIGHTS_NAME,
AdamW,
AlbertConfig,
AlbertTokenizer,
BertConfig,
BertTokenizer,
get_linear_schedule_with_warmup,
)
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes as output_modes
from transformers import glue_processors as processors
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForSequenceClassificationWithPabee, BertTokenizer),
"albert": (AlbertConfig, AlbertForSequenceClassificationWithPabee, AlbertTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def train(args, train_dataset, model, tokenizer):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model,
device_ids=[args.local_rank],
output_device=args.local_rank,
find_unused_parameters=True,
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
# set global_step to gobal_step of last saved checkpoint from model path
global_step = int(args.model_name_or_path.split("-")[-1].split("/")[0])
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(
" Will skip the first %d steps in the first epoch",
steps_trained_in_current_epoch,
)
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained,
int(args.num_train_epochs),
desc="Epoch",
disable=args.local_rank not in [-1, 0],
)
set_seed(args) # Added here for reproductibility
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"labels": batch[3],
}
inputs["token_type_ids"] = batch[2]
outputs = model(**inputs)
loss = outputs[0] # model outputs are always tuple in transformers (see doc)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
logs = {}
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
eval_key = "eval_{}".format(key)
logs[eval_key] = value
loss_scalar = (tr_loss - logging_loss) / args.logging_steps
learning_rate_scalar = scheduler.get_lr()[0]
logs["learning_rate"] = learning_rate_scalar
logs["loss"] = loss_scalar
logging_loss = tr_loss
for key, value in logs.items():
tb_writer.add_scalar(key, value, global_step)
print(json.dumps({**logs, **{"step": global_step}}))
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix="", patience=0):
if args.model_type == "albert":
model.albert.set_regression_threshold(args.regression_threshold)
model.albert.set_patience(patience)
model.albert.reset_stats()
elif args.model_type == "bert":
model.bert.set_regression_threshold(args.regression_threshold)
model.bert.set_patience(patience)
model.bert.reset_stats()
else:
raise NotImplementedError()
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_task_names = ("mnli", "mnli-mm") if args.task_name == "mnli" else (args.task_name,)
eval_outputs_dirs = (args.output_dir, args.output_dir + "-MM") if args.task_name == "mnli" else (args.output_dir,)
results = {}
for eval_task, eval_output_dir in zip(eval_task_names, eval_outputs_dirs):
eval_dataset = load_and_cache_examples(args, eval_task, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset)
eval_dataloader = DataLoader(eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"labels": batch[3],
}
inputs["token_type_ids"] = batch[2]
outputs = model(**inputs)
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
out_label_ids = np.append(out_label_ids, inputs["labels"].detach().cpu().numpy(), axis=0)
eval_loss = eval_loss / nb_eval_steps
if args.output_mode == "classification":
preds = np.argmax(preds, axis=1)
elif args.output_mode == "regression":
preds = np.squeeze(preds)
result = compute_metrics(eval_task, preds, out_label_ids)
results.update(result)
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
print(" %s = %s" % (key, str(result[key])))
writer.write("%s = %s\n" % (key, str(result[key])))
if args.eval_all_checkpoints and patience != 0:
if args.model_type == "albert":
model.albert.log_stats()
elif args.model_type == "bert":
model.bert.log_stats()
else:
raise NotImplementedError()
return results
def load_and_cache_examples(args, task, tokenizer, evaluate=False):
if args.local_rank not in [-1, 0] and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
processor = processors[task]()
output_mode = output_modes[task]
# Load data features from cache or dataset file
cached_features_file = os.path.join(
args.data_dir,
"cached_{}_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
str(task),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
label_list = processor.get_labels()
if task in ["mnli", "mnli-mm"] and args.model_type in ["roberta", "xlmroberta"]:
# HACK(label indices are swapped in RoBERTa pretrained model)
label_list[1], label_list[2] = label_list[2], label_list[1]
examples = (
processor.get_dev_examples(args.data_dir) if evaluate else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
tokenizer,
label_list=label_list,
max_length=args.max_seq_length,
output_mode=output_mode,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0 and not evaluate:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
dataset = TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pre-trained model or shortcut name.",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--patience",
default="0",
type=str,
required=False,
)
parser.add_argument(
"--regression_threshold",
default=0,
type=float,
required=False,
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training",
action="store_true",
help="Run evaluation during training at each logging step.",
)
parser.add_argument(
"--do_lower_case",
action="store_true",
help="Set this flag if you are using an uncased model.",
)
parser.add_argument(
"--per_gpu_train_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for training.",
)
parser.add_argument(
"--per_gpu_eval_batch_size",
default=1,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument(
"--learning_rate",
default=5e-5,
type=float,
help="The initial learning rate for Adam.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs",
default=3.0,
type=float,
help="Total number of training epochs to perform.",
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--logging_steps", type=int, default=500, help="Log every X updates steps.")
parser.add_argument(
"--save_steps",
type=int,
default=500,
help="Save checkpoint every X updates steps.",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument(
"--overwrite_output_dir",
action="store_true",
help="Overwrite the content of the output directory",
)
parser.add_argument(
"--overwrite_cache",
action="store_true",
help="Overwrite the cached training and evaluation sets",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument(
"--local_rank",
type=int,
default=-1,
help="For distributed training: local_rank",
)
parser.add_argument("--server_ip", type=str, default="", help="For distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="For distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = processors[args.task_name]()
args.output_mode = output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
if args.patience != "0" and args.per_gpu_eval_batch_size != 1:
raise ValueError("The eval batch size must be 1 with PABEE inference on.")
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
print("Total Model Parameters:", sum(param.numel() for param in model.parameters()))
output_layers_param_num = sum(param.numel() for param in model.classifiers.parameters())
print("Output Layers Parameters:", output_layers_param_num)
single_output_layer_param_num = sum(param.numel() for param in model.classifiers[0].parameters())
print(
"Added Output Layers Parameters:",
output_layers_param_num - single_output_layer_param_num,
)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, args.task_name, tokenizer, evaluate=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
patience_list = [int(x) for x in args.patience.split(",")]
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = model_class.from_pretrained(checkpoint)
model.to(args.device)
print(f"Evaluation for checkpoint {prefix}")
for patience in patience_list:
result = evaluate(args, model, tokenizer, prefix=prefix, patience=patience)
result = {k + "_{}".format(global_step): v for k, v in result.items()}
results.update(result)
return results
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/bert-loses-patience/run_glue_with_pabee.py |
transformers-main | examples/research_projects/bert-loses-patience/pabee/__init__.py |
|
# coding=utf-8
# Copyright 2020 Google AI, Google Brain, the HuggingFace Inc. team and Microsoft Corporation.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch ALBERT model with Patience-based Early Exit. """
import logging
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.albert.modeling_albert import (
ALBERT_INPUTS_DOCSTRING,
ALBERT_START_DOCSTRING,
AlbertModel,
AlbertPreTrainedModel,
AlbertTransformer,
)
logger = logging.getLogger(__name__)
class AlbertTransformerWithPabee(AlbertTransformer):
def adaptive_forward(self, hidden_states, current_layer, attention_mask=None, head_mask=None):
if current_layer == 0:
hidden_states = self.embedding_hidden_mapping_in(hidden_states)
else:
hidden_states = hidden_states[0]
layers_per_group = int(self.config.num_hidden_layers / self.config.num_hidden_groups)
# Index of the hidden group
group_idx = int(current_layer / (self.config.num_hidden_layers / self.config.num_hidden_groups))
layer_group_output = self.albert_layer_groups[group_idx](
hidden_states,
attention_mask,
head_mask[group_idx * layers_per_group : (group_idx + 1) * layers_per_group],
)
hidden_states = layer_group_output[0]
return (hidden_states,)
@add_start_docstrings(
"The bare ALBERT Model transformer with PABEE outputting raw hidden-states without any specific head on top.",
ALBERT_START_DOCSTRING,
)
class AlbertModelWithPabee(AlbertModel):
def __init__(self, config):
super().__init__(config)
self.encoder = AlbertTransformerWithPabee(config)
self.init_weights()
self.patience = 0
self.inference_instances_num = 0
self.inference_layers_num = 0
self.regression_threshold = 0
def set_regression_threshold(self, threshold):
self.regression_threshold = threshold
def set_patience(self, patience):
self.patience = patience
def reset_stats(self):
self.inference_instances_num = 0
self.inference_layers_num = 0
def log_stats(self):
avg_inf_layers = self.inference_layers_num / self.inference_instances_num
message = (
f"*** Patience = {self.patience} Avg. Inference Layers = {avg_inf_layers:.2f} Speed Up ="
f" {1 - avg_inf_layers / self.config.num_hidden_layers:.2f} ***"
)
print(message)
@add_start_docstrings_to_model_forward(ALBERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_dropout=None,
output_layers=None,
regression=False,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.AlbertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
extended_attention_mask = attention_mask.unsqueeze(1).unsqueeze(2)
extended_attention_mask = extended_attention_mask.to(dtype=self.dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = embedding_output
if self.training:
res = []
for i in range(self.config.num_hidden_layers):
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs,
current_layer=i,
attention_mask=extended_attention_mask,
head_mask=head_mask,
)
pooled_output = self.pooler_activation(self.pooler(encoder_outputs[0][:, 0]))
logits = output_layers[i](output_dropout(pooled_output))
res.append(logits)
elif self.patience == 0: # Use all layers for inference
encoder_outputs = self.encoder(encoder_outputs, extended_attention_mask, head_mask=head_mask)
pooled_output = self.pooler_activation(self.pooler(encoder_outputs[0][:, 0]))
res = [output_layers[self.config.num_hidden_layers - 1](pooled_output)]
else:
patient_counter = 0
patient_result = None
calculated_layer_num = 0
for i in range(self.config.num_hidden_layers):
calculated_layer_num += 1
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs,
current_layer=i,
attention_mask=extended_attention_mask,
head_mask=head_mask,
)
pooled_output = self.pooler_activation(self.pooler(encoder_outputs[0][:, 0]))
logits = output_layers[i](pooled_output)
if regression:
labels = logits.detach()
if patient_result is not None:
patient_labels = patient_result.detach()
if (patient_result is not None) and torch.abs(patient_result - labels) < self.regression_threshold:
patient_counter += 1
else:
patient_counter = 0
else:
labels = logits.detach().argmax(dim=1)
if patient_result is not None:
patient_labels = patient_result.detach().argmax(dim=1)
if (patient_result is not None) and torch.all(labels.eq(patient_labels)):
patient_counter += 1
else:
patient_counter = 0
patient_result = logits
if patient_counter == self.patience:
break
res = [patient_result]
self.inference_layers_num += calculated_layer_num
self.inference_instances_num += 1
return res
@add_start_docstrings(
"""Albert Model transformer with PABEE and a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
ALBERT_START_DOCSTRING,
)
class AlbertForSequenceClassificationWithPabee(AlbertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.albert = AlbertModelWithPabee(config)
self.dropout = nn.Dropout(config.classifier_dropout_prob)
self.classifiers = nn.ModuleList(
[nn.Linear(config.hidden_size, self.config.num_labels) for _ in range(config.num_hidden_layers)]
)
self.init_weights()
@add_start_docstrings_to_model_forward(ALBERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in ``[0, ..., config.num_labels - 1]``.
If ``config.num_labels == 1`` a regression loss is computed (Mean-Square loss),
If ``config.num_labels > 1`` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.AlbertConfig`) and inputs:
loss (`optional`, returned when ``labels`` is provided) ``torch.FloatTensor`` of shape ``(1,)``:
Classification (or regression if config.num_labels==1) loss.
logits ``torch.FloatTensor`` of shape ``(batch_size, config.num_labels)``
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
Examples::
from transformers import AlbertTokenizer
from pabee import AlbertForSequenceClassificationWithPabee
from torch import nn
import torch
tokenizer = AlbertTokenizer.from_pretrained('albert-base-v2')
model = AlbertForSequenceClassificationWithPabee.from_pretrained('albert-base-v2')
input_ids = torch.tensor(tokenizer.encode("Hello, my dog is cute")).unsqueeze(0) # Batch size 1
labels = torch.tensor([1]).unsqueeze(0) # Batch size 1
outputs = model(input_ids, labels=labels)
loss, logits = outputs[:2]
"""
logits = self.albert(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_dropout=self.dropout,
output_layers=self.classifiers,
regression=self.num_labels == 1,
)
outputs = (logits[-1],)
if labels is not None:
total_loss = None
total_weights = 0
for ix, logits_item in enumerate(logits):
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits_item.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits_item.view(-1, self.num_labels), labels.view(-1))
if total_loss is None:
total_loss = loss
else:
total_loss += loss * (ix + 1)
total_weights += ix + 1
outputs = (total_loss / total_weights,) + outputs
return outputs
| transformers-main | examples/research_projects/bert-loses-patience/pabee/modeling_pabee_albert.py |
# coding=utf-8
# Copyright 2020 The Google AI Language Team Authors, The HuggingFace Inc. team and Microsoft Corporation.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BERT model with Patience-based Early Exit. """
import logging
import torch
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from transformers.file_utils import add_start_docstrings, add_start_docstrings_to_model_forward
from transformers.models.bert.modeling_bert import (
BERT_INPUTS_DOCSTRING,
BERT_START_DOCSTRING,
BertEncoder,
BertModel,
BertPreTrainedModel,
)
logger = logging.getLogger(__name__)
class BertEncoderWithPabee(BertEncoder):
def adaptive_forward(self, hidden_states, current_layer, attention_mask=None, head_mask=None):
layer_outputs = self.layer[current_layer](hidden_states, attention_mask, head_mask[current_layer])
hidden_states = layer_outputs[0]
return hidden_states
@add_start_docstrings(
"The bare Bert Model transformer with PABEE outputting raw hidden-states without any specific head on top.",
BERT_START_DOCSTRING,
)
class BertModelWithPabee(BertModel):
"""
The model can behave as an encoder (with only self-attention) as well
as a decoder, in which case a layer of cross-attention is added between
the self-attention layers, following the architecture described in `Attention is all you need`_ by Ashish Vaswani,
Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
To behave as a decoder the model needs to be initialized with the
:obj:`is_decoder` argument of the configuration set to :obj:`True`; an
:obj:`encoder_hidden_states` is expected as an input to the forward pass.
.. _`Attention is all you need`:
https://arxiv.org/abs/1706.03762
"""
def __init__(self, config):
super().__init__(config)
self.encoder = BertEncoderWithPabee(config)
self.init_weights()
self.patience = 0
self.inference_instances_num = 0
self.inference_layers_num = 0
self.regression_threshold = 0
def set_regression_threshold(self, threshold):
self.regression_threshold = threshold
def set_patience(self, patience):
self.patience = patience
def reset_stats(self):
self.inference_instances_num = 0
self.inference_layers_num = 0
def log_stats(self):
avg_inf_layers = self.inference_layers_num / self.inference_instances_num
message = (
f"*** Patience = {self.patience} Avg. Inference Layers = {avg_inf_layers:.2f} Speed Up ="
f" {1 - avg_inf_layers / self.config.num_hidden_layers:.2f} ***"
)
print(message)
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
output_dropout=None,
output_layers=None,
regression=False,
):
r"""
Return:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
last_hidden_state (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`torch.FloatTensor`: of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token)
further processed by a Linear layer and a Tanh activation function. The Linear
layer weights are trained from the next sentence prediction (classification)
objective during pre-training.
This output is usually *not* a good summary
of the semantic content of the input, you're often better with averaging or pooling
the sequence of hidden-states for the whole input sequence.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = embedding_output
if self.training:
res = []
for i in range(self.config.num_hidden_layers):
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs, current_layer=i, attention_mask=extended_attention_mask, head_mask=head_mask
)
pooled_output = self.pooler(encoder_outputs)
logits = output_layers[i](output_dropout(pooled_output))
res.append(logits)
elif self.patience == 0: # Use all layers for inference
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
)
pooled_output = self.pooler(encoder_outputs[0])
res = [output_layers[self.config.num_hidden_layers - 1](pooled_output)]
else:
patient_counter = 0
patient_result = None
calculated_layer_num = 0
for i in range(self.config.num_hidden_layers):
calculated_layer_num += 1
encoder_outputs = self.encoder.adaptive_forward(
encoder_outputs, current_layer=i, attention_mask=extended_attention_mask, head_mask=head_mask
)
pooled_output = self.pooler(encoder_outputs)
logits = output_layers[i](pooled_output)
if regression:
labels = logits.detach()
if patient_result is not None:
patient_labels = patient_result.detach()
if (patient_result is not None) and torch.abs(patient_result - labels) < self.regression_threshold:
patient_counter += 1
else:
patient_counter = 0
else:
labels = logits.detach().argmax(dim=1)
if patient_result is not None:
patient_labels = patient_result.detach().argmax(dim=1)
if (patient_result is not None) and torch.all(labels.eq(patient_labels)):
patient_counter += 1
else:
patient_counter = 0
patient_result = logits
if patient_counter == self.patience:
break
res = [patient_result]
self.inference_layers_num += calculated_layer_num
self.inference_instances_num += 1
return res
@add_start_docstrings(
"""Bert Model transformer with PABEE and a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
BERT_START_DOCSTRING,
)
class BertForSequenceClassificationWithPabee(BertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.bert = BertModelWithPabee(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifiers = nn.ModuleList(
[nn.Linear(config.hidden_size, self.config.num_labels) for _ in range(config.num_hidden_layers)]
)
self.init_weights()
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss.
Indices should be in :obj:`[0, ..., config.num_labels - 1]`.
If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
Returns:
:obj:`tuple(torch.FloatTensor)` comprising various elements depending on the configuration (:class:`~transformers.BertConfig`) and inputs:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`label` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape
:obj:`(batch_size, num_heads, sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
Examples::
from transformers import BertTokenizer, BertForSequenceClassification
from pabee import BertForSequenceClassificationWithPabee
from torch import nn
import torch
tokenizer = BertTokenizer.from_pretrained('bert-base-uncased')
model = BertForSequenceClassificationWithPabee.from_pretrained('bert-base-uncased')
input_ids = torch.tensor(tokenizer.encode("Hello, my dog is cute", add_special_tokens=True)).unsqueeze(0) # Batch size 1
labels = torch.tensor([1]).unsqueeze(0) # Batch size 1
outputs = model(input_ids, labels=labels)
loss, logits = outputs[:2]
"""
logits = self.bert(
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_dropout=self.dropout,
output_layers=self.classifiers,
regression=self.num_labels == 1,
)
outputs = (logits[-1],)
if labels is not None:
total_loss = None
total_weights = 0
for ix, logits_item in enumerate(logits):
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits_item.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits_item.view(-1, self.num_labels), labels.view(-1))
if total_loss is None:
total_loss = loss
else:
total_loss += loss * (ix + 1)
total_weights += ix + 1
outputs = (total_loss / total_weights,) + outputs
return outputs
| transformers-main | examples/research_projects/bert-loses-patience/pabee/modeling_pabee_bert.py |
#!/usr/bin/env python3
""" This script is adapted from the Bertology pruning code (https://github.com/huggingface/transformers/blob/783d7d2629e97c5f0c5f9ef01b8c66410275c204/examples/research_projects/bertology/run_bertology.py)
to prune GPT-like models. The author is @altsoph.
"""
import argparse
import logging
import os
from datetime import datetime
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, TensorDataset
from tqdm import tqdm
from transformers import GPT2LMHeadModel
logger = logging.getLogger(__name__)
def save_model(model, dirpath):
# save results
if os.path.exists(dirpath):
if os.path.exists(os.path.join(dirpath, "config.json")) and os.path.isfile(
os.path.join(dirpath, "config.json")
):
os.remove(os.path.join(dirpath, "config.json"))
if os.path.exists(os.path.join(dirpath, "pytorch_model.bin")) and os.path.isfile(
os.path.join(dirpath, "pytorch_model.bin")
):
os.remove(os.path.join(dirpath, "pytorch_model.bin"))
else:
os.makedirs(dirpath)
model.save_pretrained(dirpath)
def entropy(p, unlogit=False):
"""Compute the entropy of a probability distribution"""
exponent = 2
if unlogit:
p = torch.pow(p, exponent)
plogp = p * torch.log(p)
plogp[p == 0] = 0
return -plogp.sum(dim=-1)
def print_2d_tensor(tensor):
"""Print a 2D tensor"""
logger.info("lv, h >\t" + "\t".join(f"{x + 1}" for x in range(len(tensor))))
for row in range(len(tensor)):
if tensor.dtype != torch.long:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:.5f}" for x in tensor[row].cpu().data))
else:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:d}" for x in tensor[row].cpu().data))
def compute_heads_importance(
args, model, eval_dataloader, compute_entropy=True, compute_importance=True, head_mask=None, actually_pruned=False
):
"""This method shows how to compute:
- head attention entropy
- head importance scores according to http://arxiv.org/abs/1905.10650
"""
# Prepare our tensors
n_layers, n_heads = model.config.num_hidden_layers, model.config.num_attention_heads
head_importance = torch.zeros(n_layers, n_heads).to(args.device)
attn_entropy = torch.zeros(n_layers, n_heads).to(args.device)
if head_mask is None:
head_mask = torch.ones(n_layers, n_heads).to(args.device)
head_mask.requires_grad_(requires_grad=True)
# If actually pruned attention multi-head, set head mask to None to avoid shape mismatch
if actually_pruned:
head_mask = None
tot_tokens = 0.0
total_loss = 0.0
for step, inputs in enumerate(tqdm(eval_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])):
inputs = tuple(t.to(args.device) for t in inputs)
(input_ids,) = inputs
# Do a forward pass (not with torch.no_grad() since we need gradients for importance score - see below)
outputs = model(input_ids, labels=input_ids, head_mask=head_mask)
# (loss), lm_logits, presents, (all hidden_states), (attentions)
loss, _, all_attentions = (
outputs[0],
outputs[1],
outputs[-1],
) # Loss and logits are the first, attention the last
loss.backward() # Backpropagate to populate the gradients in the head mask
total_loss += loss.detach().cpu().numpy()
if compute_entropy:
for layer, attn in enumerate(all_attentions):
masked_entropy = entropy(attn.detach(), True)
attn_entropy[layer] += masked_entropy.sum(-1).sum(0).sum(0).detach()
if compute_importance:
head_importance += head_mask.grad.abs().detach()
tot_tokens += torch.ones_like(input_ids).float().detach().sum().data
# Normalize
attn_entropy /= tot_tokens
head_importance /= tot_tokens
# Layerwise importance normalization
if not args.dont_normalize_importance_by_layer:
exponent = 2
norm_by_layer = torch.pow(torch.pow(head_importance, exponent).sum(-1), 1 / exponent)
head_importance /= norm_by_layer.unsqueeze(-1) + 1e-20
if not args.dont_normalize_global_importance:
head_importance = (head_importance - head_importance.min()) / (head_importance.max() - head_importance.min())
# Print matrices
if compute_entropy:
logger.info("Attention entropies")
print_2d_tensor(attn_entropy)
if compute_importance:
logger.info("Head importance scores")
print_2d_tensor(head_importance)
logger.info("Head ranked by importance scores")
head_ranks = torch.zeros(head_importance.numel(), dtype=torch.long, device=args.device)
head_ranks[head_importance.view(-1).sort(descending=True)[1]] = torch.arange(
head_importance.numel(), device=args.device
)
head_ranks = head_ranks.view_as(head_importance)
print_2d_tensor(head_ranks)
return attn_entropy, head_importance, total_loss
def mask_heads(args, model, eval_dataloader):
"""This method shows how to mask head (set some heads to zero), to test the effect on the network,
based on the head importance scores, as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
_, head_importance, loss = compute_heads_importance(args, model, eval_dataloader, compute_entropy=False)
original_score = 1 / loss # instead of downsteam score use the LM loss
logger.info("Pruning: original score: %f, threshold: %f", original_score, original_score * args.masking_threshold)
new_head_mask = torch.ones_like(head_importance)
num_to_mask = max(1, int(new_head_mask.numel() * args.masking_amount))
current_score = original_score
while current_score >= original_score * args.masking_threshold:
head_mask = new_head_mask.clone().detach() # save current head mask
# heads from least important to most - keep only not-masked heads
head_importance[head_mask == 0.0] = float("Inf")
current_heads_to_mask = head_importance.view(-1).sort()[1]
if len(current_heads_to_mask) <= num_to_mask:
print("BREAK BY num_to_mask")
break
# mask heads
current_heads_to_mask = current_heads_to_mask[:num_to_mask]
logger.info("Heads to mask: %s", str(current_heads_to_mask.tolist()))
new_head_mask = new_head_mask.view(-1)
new_head_mask[current_heads_to_mask] = 0.0
new_head_mask = new_head_mask.view_as(head_mask)
new_head_mask = new_head_mask.clone().detach()
print_2d_tensor(new_head_mask)
# Compute metric and head importance again
_, head_importance, loss = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, head_mask=new_head_mask
)
current_score = 1 / loss
logger.info(
"Masking: current score: %f, remaining heads %d (%.1f percents)",
current_score,
new_head_mask.sum(),
new_head_mask.sum() / new_head_mask.numel() * 100,
)
logger.info("Final head mask")
print_2d_tensor(head_mask)
np.save(os.path.join(args.output_dir, "head_mask.npy"), head_mask.detach().cpu().numpy())
return head_mask
def prune_heads(args, model, eval_dataloader, head_mask):
"""This method shows how to prune head (remove heads weights) based on
the head importance scores as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
# Try pruning and test time speedup
# Pruning is like masking but we actually remove the masked weights
before_time = datetime.now()
_, _, loss = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, compute_importance=False, head_mask=head_mask
)
score_masking = 1 / loss
original_time = datetime.now() - before_time
original_num_params = sum(p.numel() for p in model.parameters())
heads_to_prune = {
layer: (1 - head_mask[layer].long()).nonzero().squeeze().tolist() for layer in range(len(head_mask))
}
for k, v in heads_to_prune.items():
if isinstance(v, int):
heads_to_prune[k] = [
v,
]
assert sum(len(h) for h in heads_to_prune.values()) == (1 - head_mask.long()).sum().item()
model.prune_heads(heads_to_prune)
pruned_num_params = sum(p.numel() for p in model.parameters())
before_time = datetime.now()
_, _, loss = compute_heads_importance(
args,
model,
eval_dataloader,
compute_entropy=False,
compute_importance=False,
head_mask=None,
actually_pruned=True,
)
score_pruning = 1 / loss
new_time = datetime.now() - before_time
logger.info(
"Pruning: original num of params: %.2e, after pruning %.2e (%.1f percents)",
original_num_params,
pruned_num_params,
pruned_num_params / original_num_params * 100,
)
logger.info("Pruning: score with masking: %f score with pruning: %f", score_masking, score_pruning)
logger.info("Pruning: speed ratio (original timing / new timing): %f percents", original_time / new_time * 100)
save_model(model, args.output_dir)
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from s3",
)
parser.add_argument(
"--data_subset", type=int, default=-1, help="If > 0: limit the data to a subset of data_subset instances."
)
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Whether to overwrite data in output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument(
"--dont_normalize_importance_by_layer", action="store_true", help="Don't normalize importance score by layers"
)
parser.add_argument(
"--dont_normalize_global_importance",
action="store_true",
help="Don't normalize all importance scores between 0 and 1",
)
parser.add_argument(
"--try_masking", action="store_true", help="Whether to try to mask head until a threshold of accuracy."
)
parser.add_argument(
"--masking_threshold",
default=0.9,
type=float,
help="masking threshold in term of metrics (stop masking when metric < threshold * original metric value).",
)
parser.add_argument(
"--masking_amount", default=0.1, type=float, help="Amount to heads to masking at each masking step."
)
parser.add_argument("--metric_name", default="acc", type=str, help="Metric to use for head masking.")
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. \n"
"Sequences longer than this will be truncated, sequences shorter padded."
),
)
parser.add_argument("--batch_size", default=1, type=int, help="Batch size.")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup devices and distributed training
if args.local_rank == -1 or args.no_cuda:
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else:
torch.cuda.set_device(args.local_rank)
args.device = torch.device("cuda", args.local_rank)
args.n_gpu = 1
torch.distributed.init_process_group(backend="nccl") # Initializes the distributed backend
# Setup logging
logging.basicConfig(level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN)
logger.info("device: {} n_gpu: {}, distributed: {}".format(args.device, args.n_gpu, bool(args.local_rank != -1)))
model = GPT2LMHeadModel.from_pretrained(args.model_name_or_path)
# Distributed and parallel training
model.to(args.device)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
elif args.n_gpu > 1:
model = nn.DataParallel(model)
# Print/save training arguments
os.makedirs(args.output_dir, exist_ok=True)
torch.save(args, os.path.join(args.output_dir, "run_args.bin"))
logger.info("Training/evaluation parameters %s", args)
# Prepare dataset
numpy_data = np.concatenate(
[
np.loadtxt(args.data_dir, dtype=np.int64),
]
)
train_tensor_dataset = (torch.from_numpy(numpy_data),)
train_data = TensorDataset(*train_tensor_dataset)
train_sampler = RandomSampler(train_data)
eval_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.batch_size)
# Compute head entropy and importance score
compute_heads_importance(args, model, eval_dataloader)
# Try head masking (set heads to zero until the score goes under a threshole)
# and head pruning (remove masked heads and see the effect on the network)
if args.try_masking and args.masking_threshold > 0.0 and args.masking_threshold < 1.0:
head_mask = mask_heads(args, model, eval_dataloader)
prune_heads(args, model, eval_dataloader, head_mask)
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/bertology/run_prune_gpt.py |
#!/usr/bin/env python3
# Copyright 2018 CMU and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Bertology: this script shows how you can explore the internals of the models in the library to:
- compute the entropy of the head attentions
- compute the importance of each head
- prune (remove) the low importance head.
Some parts of this script are adapted from the code of Michel et al. (http://arxiv.org/abs/1905.10650)
which is available at https://github.com/pmichel31415/are-16-heads-really-better-than-1
"""
import argparse
import logging
import os
from datetime import datetime
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, SequentialSampler, Subset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm
import transformers
from transformers import (
AutoConfig,
AutoModelForSequenceClassification,
AutoTokenizer,
GlueDataset,
default_data_collator,
glue_compute_metrics,
glue_output_modes,
glue_processors,
set_seed,
)
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
def entropy(p):
"""Compute the entropy of a probability distribution"""
plogp = p * torch.log(p)
plogp[p == 0] = 0
return -plogp.sum(dim=-1)
def print_2d_tensor(tensor):
"""Print a 2D tensor"""
logger.info("lv, h >\t" + "\t".join(f"{x + 1}" for x in range(len(tensor))))
for row in range(len(tensor)):
if tensor.dtype != torch.long:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:.5f}" for x in tensor[row].cpu().data))
else:
logger.info(f"layer {row + 1}:\t" + "\t".join(f"{x:d}" for x in tensor[row].cpu().data))
def compute_heads_importance(
args, model, eval_dataloader, compute_entropy=True, compute_importance=True, head_mask=None, actually_pruned=False
):
"""This method shows how to compute:
- head attention entropy
- head importance scores according to http://arxiv.org/abs/1905.10650
"""
# Prepare our tensors
n_layers, n_heads = model.config.num_hidden_layers, model.config.num_attention_heads
head_importance = torch.zeros(n_layers, n_heads).to(args.device)
attn_entropy = torch.zeros(n_layers, n_heads).to(args.device)
if head_mask is None:
head_mask = torch.ones(n_layers, n_heads).to(args.device)
head_mask.requires_grad_(requires_grad=True)
# If actually pruned attention multi-head, set head mask to None to avoid shape mismatch
if actually_pruned:
head_mask = None
preds = None
labels = None
tot_tokens = 0.0
for step, inputs in enumerate(tqdm(eval_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])):
for k, v in inputs.items():
inputs[k] = v.to(args.device)
# Do a forward pass (not with torch.no_grad() since we need gradients for importance score - see below)
outputs = model(**inputs, head_mask=head_mask)
loss, logits, all_attentions = (
outputs[0],
outputs[1],
outputs[-1],
) # Loss and logits are the first, attention the last
loss.backward() # Backpropagate to populate the gradients in the head mask
if compute_entropy:
for layer, attn in enumerate(all_attentions):
masked_entropy = entropy(attn.detach()) * inputs["attention_mask"].float().unsqueeze(1)
attn_entropy[layer] += masked_entropy.sum(-1).sum(0).detach()
if compute_importance:
head_importance += head_mask.grad.abs().detach()
# Also store our logits/labels if we want to compute metrics afterwards
if preds is None:
preds = logits.detach().cpu().numpy()
labels = inputs["labels"].detach().cpu().numpy()
else:
preds = np.append(preds, logits.detach().cpu().numpy(), axis=0)
labels = np.append(labels, inputs["labels"].detach().cpu().numpy(), axis=0)
tot_tokens += inputs["attention_mask"].float().detach().sum().data
# Normalize
attn_entropy /= tot_tokens
head_importance /= tot_tokens
# Layerwise importance normalization
if not args.dont_normalize_importance_by_layer:
exponent = 2
norm_by_layer = torch.pow(torch.pow(head_importance, exponent).sum(-1), 1 / exponent)
head_importance /= norm_by_layer.unsqueeze(-1) + 1e-20
if not args.dont_normalize_global_importance:
head_importance = (head_importance - head_importance.min()) / (head_importance.max() - head_importance.min())
# Print/save matrices
np.save(os.path.join(args.output_dir, "attn_entropy.npy"), attn_entropy.detach().cpu().numpy())
np.save(os.path.join(args.output_dir, "head_importance.npy"), head_importance.detach().cpu().numpy())
logger.info("Attention entropies")
print_2d_tensor(attn_entropy)
logger.info("Head importance scores")
print_2d_tensor(head_importance)
logger.info("Head ranked by importance scores")
head_ranks = torch.zeros(head_importance.numel(), dtype=torch.long, device=args.device)
head_ranks[head_importance.view(-1).sort(descending=True)[1]] = torch.arange(
head_importance.numel(), device=args.device
)
head_ranks = head_ranks.view_as(head_importance)
print_2d_tensor(head_ranks)
return attn_entropy, head_importance, preds, labels
def mask_heads(args, model, eval_dataloader):
"""This method shows how to mask head (set some heads to zero), to test the effect on the network,
based on the head importance scores, as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
_, head_importance, preds, labels = compute_heads_importance(args, model, eval_dataloader, compute_entropy=False)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
original_score = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
logger.info("Pruning: original score: %f, threshold: %f", original_score, original_score * args.masking_threshold)
new_head_mask = torch.ones_like(head_importance)
num_to_mask = max(1, int(new_head_mask.numel() * args.masking_amount))
current_score = original_score
while current_score >= original_score * args.masking_threshold:
head_mask = new_head_mask.clone() # save current head mask
# heads from least important to most - keep only not-masked heads
head_importance[head_mask == 0.0] = float("Inf")
current_heads_to_mask = head_importance.view(-1).sort()[1]
if len(current_heads_to_mask) <= num_to_mask:
break
# mask heads
current_heads_to_mask = current_heads_to_mask[:num_to_mask]
logger.info("Heads to mask: %s", str(current_heads_to_mask.tolist()))
new_head_mask = new_head_mask.view(-1)
new_head_mask[current_heads_to_mask] = 0.0
new_head_mask = new_head_mask.view_as(head_mask)
new_head_mask = new_head_mask.clone().detach()
print_2d_tensor(new_head_mask)
# Compute metric and head importance again
_, head_importance, preds, labels = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, head_mask=new_head_mask
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
current_score = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
logger.info(
"Masking: current score: %f, remaining heads %d (%.1f percents)",
current_score,
new_head_mask.sum(),
new_head_mask.sum() / new_head_mask.numel() * 100,
)
logger.info("Final head mask")
print_2d_tensor(head_mask)
np.save(os.path.join(args.output_dir, "head_mask.npy"), head_mask.detach().cpu().numpy())
return head_mask
def prune_heads(args, model, eval_dataloader, head_mask):
"""This method shows how to prune head (remove heads weights) based on
the head importance scores as described in Michel et al. (http://arxiv.org/abs/1905.10650)
"""
# Try pruning and test time speedup
# Pruning is like masking but we actually remove the masked weights
before_time = datetime.now()
_, _, preds, labels = compute_heads_importance(
args, model, eval_dataloader, compute_entropy=False, compute_importance=False, head_mask=head_mask
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
score_masking = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
original_time = datetime.now() - before_time
original_num_params = sum(p.numel() for p in model.parameters())
heads_to_prune = {
layer: (1 - head_mask[layer].long()).nonzero().squeeze().tolist() for layer in range(len(head_mask))
}
assert sum(len(h) for h in heads_to_prune.values()) == (1 - head_mask.long()).sum().item()
model.prune_heads(heads_to_prune)
pruned_num_params = sum(p.numel() for p in model.parameters())
before_time = datetime.now()
_, _, preds, labels = compute_heads_importance(
args,
model,
eval_dataloader,
compute_entropy=False,
compute_importance=False,
head_mask=None,
actually_pruned=True,
)
preds = np.argmax(preds, axis=1) if args.output_mode == "classification" else np.squeeze(preds)
score_pruning = glue_compute_metrics(args.task_name, preds, labels)[args.metric_name]
new_time = datetime.now() - before_time
logger.info(
"Pruning: original num of params: %.2e, after pruning %.2e (%.1f percents)",
original_num_params,
pruned_num_params,
pruned_num_params / original_num_params * 100,
)
logger.info("Pruning: score with masking: %f score with pruning: %f", score_masking, score_pruning)
logger.info("Pruning: speed ratio (new timing / original timing): %f percents", original_time / new_time * 100)
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .tsv files (or other data files) for the task.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--task_name",
default=None,
type=str,
required=True,
help="The name of the task to train selected in the list: " + ", ".join(glue_processors.keys()),
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name",
default="",
type=str,
help="Pretrained config name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name_or_path",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--data_subset", type=int, default=-1, help="If > 0: limit the data to a subset of data_subset instances."
)
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Whether to overwrite data in output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument(
"--dont_normalize_importance_by_layer", action="store_true", help="Don't normalize importance score by layers"
)
parser.add_argument(
"--dont_normalize_global_importance",
action="store_true",
help="Don't normalize all importance scores between 0 and 1",
)
parser.add_argument(
"--try_masking", action="store_true", help="Whether to try to mask head until a threshold of accuracy."
)
parser.add_argument(
"--masking_threshold",
default=0.9,
type=float,
help="masking threshold in term of metrics (stop masking when metric < threshold * original metric value).",
)
parser.add_argument(
"--masking_amount", default=0.1, type=float, help="Amount to heads to masking at each masking step."
)
parser.add_argument("--metric_name", default="acc", type=str, help="Metric to use for head masking.")
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. \n"
"Sequences longer than this will be truncated, sequences shorter padded."
),
)
parser.add_argument("--batch_size", default=1, type=int, help="Batch size.")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup devices and distributed training
if args.local_rank == -1 or args.no_cuda:
args.device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else:
torch.cuda.set_device(args.local_rank)
args.device = torch.device("cuda", args.local_rank)
args.n_gpu = 1
torch.distributed.init_process_group(backend="nccl") # Initializes the distributed backend
# Setup logging
logging.basicConfig(level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN)
logger.info("device: {} n_gpu: {}, distributed: {}".format(args.device, args.n_gpu, bool(args.local_rank != -1)))
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seeds
set_seed(args.seed)
# Prepare GLUE task
args.task_name = args.task_name.lower()
if args.task_name not in glue_processors:
raise ValueError("Task not found: %s" % (args.task_name))
processor = glue_processors[args.task_name]()
args.output_mode = glue_output_modes[args.task_name]
label_list = processor.get_labels()
num_labels = len(label_list)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
num_labels=num_labels,
finetuning_task=args.task_name,
output_attentions=True,
cache_dir=args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
cache_dir=args.cache_dir,
)
model = AutoModelForSequenceClassification.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir,
)
# Distributed and parallel training
model.to(args.device)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
elif args.n_gpu > 1:
model = nn.DataParallel(model)
# Print/save training arguments
os.makedirs(args.output_dir, exist_ok=True)
torch.save(args, os.path.join(args.output_dir, "run_args.bin"))
logger.info("Training/evaluation parameters %s", args)
# Prepare dataset for the GLUE task
eval_dataset = GlueDataset(args, tokenizer=tokenizer, mode="dev")
if args.data_subset > 0:
eval_dataset = Subset(eval_dataset, list(range(min(args.data_subset, len(eval_dataset)))))
eval_sampler = SequentialSampler(eval_dataset) if args.local_rank == -1 else DistributedSampler(eval_dataset)
eval_dataloader = DataLoader(
eval_dataset, sampler=eval_sampler, batch_size=args.batch_size, collate_fn=default_data_collator
)
# Compute head entropy and importance score
compute_heads_importance(args, model, eval_dataloader)
# Try head masking (set heads to zero until the score goes under a threshole)
# and head pruning (remove masked heads and see the effect on the network)
if args.try_masking and args.masking_threshold > 0.0 and args.masking_threshold < 1.0:
head_mask = mask_heads(args, model, eval_dataloader)
prune_heads(args, model, eval_dataloader, head_mask)
if __name__ == "__main__":
main()
| transformers-main | examples/research_projects/bertology/run_bertology.py |
import setuptools
with open("README.md", "r", encoding="utf-8") as fh:
long_description = fh.read()
setuptools.setup(
name="fsner",
version="0.0.1",
author="msi sayef",
author_email="[email protected]",
description="Few-shot Named Entity Recognition",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/huggingface/transformers/tree/main/examples/research_projects/fsner",
project_urls={
"Bug Tracker": "https://github.com/huggingface/transformers/issues",
},
classifiers=[
"Programming Language :: Python :: 3",
"Operating System :: OS Independent",
],
package_dir={"": "src"},
packages=setuptools.find_packages(where="src"),
python_requires=">=3.6",
install_requires=["torch>=1.9.0", "transformers>=4.9.2"],
)
| transformers-main | examples/research_projects/fsner/setup.py |
import torch
from transformers import AutoTokenizer
class FSNERTokenizerUtils(object):
def __init__(self, pretrained_model_name_or_path):
self.tokenizer = AutoTokenizer.from_pretrained(pretrained_model_name_or_path)
def tokenize(self, x):
"""
Wrapper function for tokenizing query and supports
Args:
x (`List[str] or List[List[str]]`):
List of strings for query or list of lists of strings for supports.
Returns:
`transformers.tokenization_utils_base.BatchEncoding` dict with additional keys and values for start_token_id, end_token_id and sizes of example lists for each entity type
"""
if isinstance(x, list) and all(isinstance(_x, list) for _x in x):
d = None
for l in x:
t = self.tokenizer(
l,
padding="max_length",
max_length=384,
truncation=True,
return_tensors="pt",
)
t["sizes"] = torch.tensor([len(l)])
if d is not None:
for k in d.keys():
d[k] = torch.cat((d[k], t[k]), 0)
else:
d = t
d["start_token_id"] = torch.tensor(self.tokenizer.convert_tokens_to_ids("[E]"))
d["end_token_id"] = torch.tensor(self.tokenizer.convert_tokens_to_ids("[/E]"))
elif isinstance(x, list) and all(isinstance(_x, str) for _x in x):
d = self.tokenizer(
x,
padding="max_length",
max_length=384,
truncation=True,
return_tensors="pt",
)
else:
raise Exception(
"Type of parameter x was not recognized! Only `list of strings` for query or `list of lists of"
" strings` for supports are supported."
)
return d
def extract_entity_from_scores(self, query, W_query, p_start, p_end, thresh=0.70):
"""
Extracts entities from query and scores given a threshold.
Args:
query (`List[str]`):
List of query strings.
W_query (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of query sequence tokens in the vocabulary.
p_start (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Scores of each token as being start token of an entity
p_end (`torch.FloatTensor` of shape `(batch_size, sequence_length)`):
Scores of each token as being end token of an entity
thresh (`float`):
Score threshold value
Returns:
A list of lists of tuples(decoded entity, score)
"""
final_outputs = []
for idx in range(len(W_query["input_ids"])):
start_indexes = end_indexes = range(p_start.shape[1])
output = []
for start_id in start_indexes:
for end_id in end_indexes:
if start_id < end_id:
output.append(
(
start_id,
end_id,
p_start[idx][start_id].item(),
p_end[idx][end_id].item(),
)
)
output.sort(key=lambda tup: (tup[2] * tup[3]), reverse=True)
temp = []
for k in range(len(output)):
if output[k][2] * output[k][3] >= thresh:
c_start_pos, c_end_pos = output[k][0], output[k][1]
decoded = self.tokenizer.decode(W_query["input_ids"][idx][c_start_pos:c_end_pos])
temp.append((decoded, output[k][2] * output[k][3]))
final_outputs.append(temp)
return final_outputs
| transformers-main | examples/research_projects/fsner/src/fsner/tokenizer_utils.py |
from .model import FSNERModel
from .tokenizer_utils import FSNERTokenizerUtils
__all__ = ["FSNERModel", "FSNERTokenizerUtils"]
| transformers-main | examples/research_projects/fsner/src/fsner/__init__.py |
import torch
from transformers import AutoModel
class FSNERModel(torch.nn.Module):
"""
The FSNER model implements a few-shot named entity recognition method from the paper `Example-Based Named Entity Recognition <https://arxiv.org/abs/2008.10570>`__ by
Morteza Ziyadi, Yuting Sun, Abhishek Goswami, Jade Huang, Weizhu Chen. To identify entity spans in a new domain, it
uses a train-free few-shot learning approach inspired by question-answering.
"""
def __init__(self, pretrained_model_name_or_path="sayef/fsner-bert-base-uncased"):
super(FSNERModel, self).__init__()
self.bert = AutoModel.from_pretrained(pretrained_model_name_or_path, return_dict=True)
self.cos = torch.nn.CosineSimilarity(3, 1e-08)
self.softmax = torch.nn.Softmax(dim=1)
def BERT(self, **inputs):
return self.bert(**inputs).last_hidden_state
def VectorSum(self, token_embeddings):
return token_embeddings.sum(2, keepdim=True)
def Atten(self, q_rep, S_rep, T=1):
return self.softmax(T * self.cos(q_rep, S_rep))
def forward(self, W_query, W_supports):
"""
Find scores of each token being start and end token for an entity.
Args:
W_query (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of query sequence tokens in the vocabulary.
W_supports (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
Indices of support sequence tokens in the vocabulary.
Returns:
p_start (`torch.FloatTensor` of shape `(batch_size, sequence_length)`): Scores of each token as
being start token of an entity
p_end (`torch.FloatTensor` of shape `(batch_size, sequence_length)`): Scores of each token as
being end token of an entity
"""
support_sizes = W_supports["sizes"].tolist()
start_token_id = W_supports["start_token_id"].item()
end_token_id = W_supports["end_token_id"].item()
del W_supports["sizes"]
del W_supports["start_token_id"]
del W_supports["end_token_id"]
q = self.BERT(**W_query)
S = self.BERT(**W_supports)
p_starts = None
p_ends = None
start_token_masks = W_supports["input_ids"] == start_token_id
end_token_masks = W_supports["input_ids"] == end_token_id
for i, size in enumerate(support_sizes):
if i == 0:
s = 0
else:
s = support_sizes[i - 1]
s_start = S[s : s + size][start_token_masks[s : s + size]]
s_end = S[s : s + size][end_token_masks[s : s + size]]
p_start = torch.matmul(q[i], s_start.T).sum(1).softmax(0)
p_end = torch.matmul(q[i], s_end.T).sum(1).softmax(0)
if p_starts is not None:
p_starts = torch.vstack((p_starts, p_start))
p_ends = torch.vstack((p_ends, p_end))
else:
p_starts = p_start
p_ends = p_end
return p_starts, p_ends
| transformers-main | examples/research_projects/fsner/src/fsner/model.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for language modeling on a text file (GPT, GPT-2, CTRL, BERT, RoBERTa, XLNet).
GPT, GPT-2 and CTRL are fine-tuned using a causal language modeling (CLM) loss. BERT and RoBERTa are fine-tuned
using a masked language modeling (MLM) loss. XLNet is fine-tuned using a permutation language modeling (PLM) loss.
"""
import logging
import math
import os
from dataclasses import dataclass, field
from glob import glob
from typing import Optional
from torch.utils.data import ConcatDataset
import transformers
from transformers import (
CONFIG_MAPPING,
MODEL_WITH_LM_HEAD_MAPPING,
AutoConfig,
AutoModelWithLMHead,
AutoTokenizer,
DataCollatorForLanguageModeling,
DataCollatorForPermutationLanguageModeling,
DataCollatorForWholeWordMask,
HfArgumentParser,
LineByLineTextDataset,
LineByLineWithRefDataset,
PreTrainedTokenizer,
TextDataset,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
MODEL_CONFIG_CLASSES = list(MODEL_WITH_LM_HEAD_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization. Leave None if you want to train a model from"
" scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
train_data_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a text file)."}
)
train_data_files: Optional[str] = field(
default=None,
metadata={
"help": (
"The input training data files (multiple files in glob format). "
"Very often splitting large files to smaller files can prevent tokenizer going out of memory"
)
},
)
eval_data_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word mask in Chinese."},
)
eval_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input eval ref data file for whole word mask in Chinese."},
)
line_by_line: bool = field(
default=False,
metadata={"help": "Whether distinct lines of text in the dataset are to be handled as distinct sequences."},
)
mlm: bool = field(
default=False, metadata={"help": "Train with masked-language modeling loss instead of language modeling."}
)
whole_word_mask: bool = field(default=False, metadata={"help": "Whether ot not to use whole word mask."})
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for masked language modeling loss"}
)
plm_probability: float = field(
default=1 / 6,
metadata={
"help": (
"Ratio of length of a span of masked tokens to surrounding context length for permutation language"
" modeling."
)
},
)
max_span_length: int = field(
default=5, metadata={"help": "Maximum length of a span of masked tokens for permutation language modeling."}
)
block_size: int = field(
default=-1,
metadata={
"help": (
"Optional input sequence length after tokenization."
"The training dataset will be truncated in block of this size for training."
"Default to the model max input length for single sentence inputs (take into account special tokens)."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
def get_dataset(
args: DataTrainingArguments,
tokenizer: PreTrainedTokenizer,
evaluate: bool = False,
cache_dir: Optional[str] = None,
):
def _dataset(file_path, ref_path=None):
if args.line_by_line:
if ref_path is not None:
if not args.whole_word_mask or not args.mlm:
raise ValueError("You need to set world whole masking and mlm to True for Chinese Whole Word Mask")
return LineByLineWithRefDataset(
tokenizer=tokenizer,
file_path=file_path,
block_size=args.block_size,
ref_path=ref_path,
)
return LineByLineTextDataset(tokenizer=tokenizer, file_path=file_path, block_size=args.block_size)
else:
return TextDataset(
tokenizer=tokenizer,
file_path=file_path,
block_size=args.block_size,
overwrite_cache=args.overwrite_cache,
cache_dir=cache_dir,
)
if evaluate:
return _dataset(args.eval_data_file, args.eval_ref_file)
elif args.train_data_files:
return ConcatDataset([_dataset(f) for f in glob(args.train_data_files)])
else:
return _dataset(args.train_data_file, args.train_ref_file)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if data_args.eval_data_file is None and training_args.do_eval:
raise ValueError(
"Cannot do evaluation without an evaluation data file. Either supply a file to --eval_data_file "
"or remove the --do_eval argument."
)
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use"
" --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
training_args.local_rank,
training_args.device,
training_args.n_gpu,
bool(training_args.local_rank != -1),
training_args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed
set_seed(training_args.seed)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
if model_args.config_name:
config = AutoConfig.from_pretrained(model_args.config_name, cache_dir=model_args.cache_dir)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(model_args.model_name_or_path, cache_dir=model_args.cache_dir)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(model_args.tokenizer_name, cache_dir=model_args.cache_dir)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(model_args.model_name_or_path, cache_dir=model_args.cache_dir)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported, but you can do it from another"
" script, save it,and load it from here, using --tokenizer_name"
)
if model_args.model_name_or_path:
model = AutoModelWithLMHead.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
else:
logger.info("Training new model from scratch")
model = AutoModelWithLMHead.from_config(config)
model.resize_token_embeddings(len(tokenizer))
if config.model_type in ["bert", "roberta", "distilbert", "camembert"] and not data_args.mlm:
raise ValueError(
"BERT and RoBERTa-like models do not have LM heads but masked LM heads. They must be run using the"
"--mlm flag (masked language modeling)."
)
if data_args.block_size <= 0:
data_args.block_size = tokenizer.max_len
# Our input block size will be the max possible for the model
else:
data_args.block_size = min(data_args.block_size, tokenizer.max_len)
# Get datasets
train_dataset = (
get_dataset(data_args, tokenizer=tokenizer, cache_dir=model_args.cache_dir) if training_args.do_train else None
)
eval_dataset = (
get_dataset(data_args, tokenizer=tokenizer, evaluate=True, cache_dir=model_args.cache_dir)
if training_args.do_eval
else None
)
if config.model_type == "xlnet":
data_collator = DataCollatorForPermutationLanguageModeling(
tokenizer=tokenizer,
plm_probability=data_args.plm_probability,
max_span_length=data_args.max_span_length,
)
else:
if data_args.mlm and data_args.whole_word_mask:
data_collator = DataCollatorForWholeWordMask(
tokenizer=tokenizer, mlm_probability=data_args.mlm_probability
)
else:
data_collator = DataCollatorForLanguageModeling(
tokenizer=tokenizer, mlm=data_args.mlm, mlm_probability=data_args.mlm_probability
)
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
data_collator=data_collator,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
prediction_loss_only=True,
)
# Training
if training_args.do_train:
model_path = (
model_args.model_name_or_path
if model_args.model_name_or_path is not None and os.path.isdir(model_args.model_name_or_path)
else None
)
trainer.train(model_path=model_path)
trainer.save_model()
# For convenience, we also re-save the tokenizer to the same directory,
# so that you can share your model easily on huggingface.co/models =)
if trainer.is_world_master():
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
eval_output = trainer.evaluate()
perplexity = math.exp(eval_output["eval_loss"])
result = {"perplexity": perplexity}
output_eval_file = os.path.join(training_args.output_dir, "eval_results_lm.txt")
if trainer.is_world_master():
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
results.update(result)
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/run_language_modeling.py |
#!/usr/bin/env python
import torch
from transformers import CamembertForMaskedLM, CamembertTokenizer
def fill_mask(masked_input, model, tokenizer, topk=5):
# Adapted from https://github.com/pytorch/fairseq/blob/master/fairseq/models/roberta/hub_interface.py
assert masked_input.count("<mask>") == 1
input_ids = torch.tensor(tokenizer.encode(masked_input, add_special_tokens=True)).unsqueeze(0) # Batch size 1
logits = model(input_ids)[0] # The last hidden-state is the first element of the output tuple
masked_index = (input_ids.squeeze() == tokenizer.mask_token_id).nonzero().item()
logits = logits[0, masked_index, :]
prob = logits.softmax(dim=0)
values, indices = prob.topk(k=topk, dim=0)
topk_predicted_token_bpe = " ".join(
[tokenizer.convert_ids_to_tokens(indices[i].item()) for i in range(len(indices))]
)
masked_token = tokenizer.mask_token
topk_filled_outputs = []
for index, predicted_token_bpe in enumerate(topk_predicted_token_bpe.split(" ")):
predicted_token = predicted_token_bpe.replace("\u2581", " ")
if " {0}".format(masked_token) in masked_input:
topk_filled_outputs.append(
(
masked_input.replace(" {0}".format(masked_token), predicted_token),
values[index].item(),
predicted_token,
)
)
else:
topk_filled_outputs.append(
(
masked_input.replace(masked_token, predicted_token),
values[index].item(),
predicted_token,
)
)
return topk_filled_outputs
tokenizer = CamembertTokenizer.from_pretrained("camembert-base")
model = CamembertForMaskedLM.from_pretrained("camembert-base")
model.eval()
masked_input = "Le camembert est <mask> :)"
print(fill_mask(masked_input, model, tokenizer, topk=3))
| transformers-main | examples/legacy/run_camembert.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Transformer XL model evaluation script.
Adapted from https://github.com/kimiyoung/transformer-xl.
In particular https://github.com/kimiyoung/transformer-xl/blob/master/pytorch/eval.py
This script with default values evaluates a pretrained Transformer-XL on WikiText 103
"""
import argparse
import logging
import math
import time
import torch
from transformers import TransfoXLCorpus, TransfoXLLMHeadModel
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO
)
logger = logging.getLogger(__name__)
def main():
parser = argparse.ArgumentParser(description="PyTorch Transformer Language Model")
parser.add_argument("--model_name", type=str, default="transfo-xl-wt103", help="pretrained model name")
parser.add_argument(
"--split", type=str, default="test", choices=["all", "valid", "test"], help="which split to evaluate"
)
parser.add_argument("--batch_size", type=int, default=10, help="batch size")
parser.add_argument("--tgt_len", type=int, default=128, help="number of tokens to predict")
parser.add_argument("--ext_len", type=int, default=0, help="length of the extended context")
parser.add_argument("--mem_len", type=int, default=1600, help="length of the retained previous heads")
parser.add_argument("--clamp_len", type=int, default=1000, help="max positional embedding index")
parser.add_argument("--no_cuda", action="store_true", help="Do not use CUDA even though CUA is available")
parser.add_argument("--work_dir", type=str, required=True, help="path to the work_dir")
parser.add_argument("--no_log", action="store_true", help="do not log the eval result")
parser.add_argument("--same_length", action="store_true", help="set same length attention with masking")
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
assert args.ext_len >= 0, "extended context length must be non-negative"
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
logger.info("device: {}".format(device))
# Load a pre-processed dataset
# You can also build the corpus yourself using TransfoXLCorpus methods
# The pre-processing involve computing word frequencies to prepare the Adaptive input and SoftMax
# and tokenizing the dataset
# The pre-processed corpus is a convertion (using the conversion script )
corpus = TransfoXLCorpus.from_pretrained(args.model_name)
va_iter = corpus.get_iterator("valid", args.batch_size, args.tgt_len, device=device, ext_len=args.ext_len)
te_iter = corpus.get_iterator("test", args.batch_size, args.tgt_len, device=device, ext_len=args.ext_len)
# Load a pre-trained model
model = TransfoXLLMHeadModel.from_pretrained(args.model_name)
model.to(device)
logger.info(
"Evaluating with bsz {} tgt_len {} ext_len {} mem_len {} clamp_len {}".format(
args.batch_size, args.tgt_len, args.ext_len, args.mem_len, args.clamp_len
)
)
model.reset_memory_length(args.mem_len)
if args.clamp_len > 0:
model.clamp_len = args.clamp_len
if args.same_length:
model.same_length = True
###############################################################################
# Evaluation code
###############################################################################
def evaluate(eval_iter):
# Turn on evaluation mode which disables dropout.
model.eval()
total_len, total_loss = 0, 0.0
start_time = time.time()
with torch.no_grad():
mems = None
for idx, (data, target, seq_len) in enumerate(eval_iter):
ret = model(data, lm_labels=target, mems=mems)
loss, _, mems = ret
loss = loss.mean()
total_loss += seq_len * loss.item()
total_len += seq_len
total_time = time.time() - start_time
logger.info("Time : {:.2f}s, {:.2f}ms/segment".format(total_time, 1000 * total_time / (idx + 1)))
return total_loss / total_len
# Run on test data.
if args.split == "all":
test_loss = evaluate(te_iter)
valid_loss = evaluate(va_iter)
elif args.split == "valid":
valid_loss = evaluate(va_iter)
test_loss = None
elif args.split == "test":
test_loss = evaluate(te_iter)
valid_loss = None
def format_log(loss, split):
log_str = "| {0} loss {1:5.2f} | {0} ppl {2:9.3f} ".format(split, loss, math.exp(loss))
return log_str
log_str = ""
if valid_loss is not None:
log_str += format_log(valid_loss, "valid")
if test_loss is not None:
log_str += format_log(test_loss, "test")
logger.info("=" * 100)
logger.info(log_str)
logger.info("=" * 100)
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/run_transfo_xl.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 Google AI, Google Brain and Carnegie Mellon University Authors and the HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" OpenAI GPT model fine-tuning script.
Adapted from https://github.com/huggingface/pytorch-openai-transformer-lm/blob/master/train.py
It self adapted from https://github.com/openai/finetune-transformer-lm/blob/master/train.py
This script with default values fine-tunes and evaluate a pretrained OpenAI GPT on the RocStories dataset:
python run_openai_gpt.py \
--model_name openai-gpt \
--do_train \
--do_eval \
--train_dataset "$ROC_STORIES_DIR/cloze_test_val__spring2016 - cloze_test_ALL_val.csv" \
--eval_dataset "$ROC_STORIES_DIR/cloze_test_test__spring2016 - cloze_test_ALL_test.csv" \
--output_dir ../log \
--train_batch_size 16 \
"""
import argparse
import csv
import logging
import os
import random
import numpy as np
import torch
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from tqdm import tqdm, trange
from transformers import (
CONFIG_NAME,
WEIGHTS_NAME,
AdamW,
OpenAIGPTDoubleHeadsModel,
OpenAIGPTTokenizer,
get_linear_schedule_with_warmup,
)
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO
)
logger = logging.getLogger(__name__)
def accuracy(out, labels):
outputs = np.argmax(out, axis=1)
return np.sum(outputs == labels)
def load_rocstories_dataset(dataset_path):
"""Output a list of tuples(story, 1st continuation, 2nd continuation, label)"""
with open(dataset_path, encoding="utf_8") as f:
f = csv.reader(f)
output = []
next(f) # skip the first line
for line in tqdm(f):
output.append((" ".join(line[1:5]), line[5], line[6], int(line[-1]) - 1))
return output
def pre_process_datasets(encoded_datasets, input_len, cap_length, start_token, delimiter_token, clf_token):
"""Pre-process datasets containing lists of tuples(story, 1st continuation, 2nd continuation, label)
To Transformer inputs of shape (n_batch, n_alternative, length) comprising for each batch, continuation:
input_ids[batch, alternative, :] = [start_token] + story[:cap_length] + [delimiter_token] + cont1[:cap_length] + [clf_token]
"""
tensor_datasets = []
for dataset in encoded_datasets:
n_batch = len(dataset)
input_ids = np.zeros((n_batch, 2, input_len), dtype=np.int64)
mc_token_ids = np.zeros((n_batch, 2), dtype=np.int64)
lm_labels = np.full((n_batch, 2, input_len), fill_value=-100, dtype=np.int64)
mc_labels = np.zeros((n_batch,), dtype=np.int64)
for (
i,
(story, cont1, cont2, mc_label),
) in enumerate(dataset):
with_cont1 = [start_token] + story[:cap_length] + [delimiter_token] + cont1[:cap_length] + [clf_token]
with_cont2 = [start_token] + story[:cap_length] + [delimiter_token] + cont2[:cap_length] + [clf_token]
input_ids[i, 0, : len(with_cont1)] = with_cont1
input_ids[i, 1, : len(with_cont2)] = with_cont2
mc_token_ids[i, 0] = len(with_cont1) - 1
mc_token_ids[i, 1] = len(with_cont2) - 1
lm_labels[i, 0, : len(with_cont1)] = with_cont1
lm_labels[i, 1, : len(with_cont2)] = with_cont2
mc_labels[i] = mc_label
all_inputs = (input_ids, mc_token_ids, lm_labels, mc_labels)
tensor_datasets.append(tuple(torch.tensor(t) for t in all_inputs))
return tensor_datasets
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--model_name", type=str, default="openai-gpt", help="pretrained model name")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument("--train_dataset", type=str, default="")
parser.add_argument("--eval_dataset", type=str, default="")
parser.add_argument("--seed", type=int, default=42)
parser.add_argument("--num_train_epochs", type=int, default=3)
parser.add_argument("--train_batch_size", type=int, default=8)
parser.add_argument("--eval_batch_size", type=int, default=16)
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", type=int, default=1)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help=(
"If > 0: set total number of training steps to perform. Override num_train_epochs."
),
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--learning_rate", type=float, default=6.25e-5)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--lr_schedule", type=str, default="warmup_linear")
parser.add_argument("--weight_decay", type=float, default=0.01)
parser.add_argument("--lm_coef", type=float, default=0.9)
parser.add_argument("--n_valid", type=int, default=374)
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
print(args)
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
torch.cuda.manual_seed_all(args.seed)
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
n_gpu = torch.cuda.device_count()
logger.info("device: {}, n_gpu {}".format(device, n_gpu))
if not args.do_train and not args.do_eval:
raise ValueError("At least one of `do_train` or `do_eval` must be True.")
if not os.path.exists(args.output_dir):
os.makedirs(args.output_dir)
# Load tokenizer and model
# This loading functions also add new tokens and embeddings called `special tokens`
# These new embeddings will be fine-tuned on the RocStories dataset
special_tokens = ["_start_", "_delimiter_", "_classify_"]
tokenizer = OpenAIGPTTokenizer.from_pretrained(args.model_name)
tokenizer.add_tokens(special_tokens)
special_tokens_ids = tokenizer.convert_tokens_to_ids(special_tokens)
model = OpenAIGPTDoubleHeadsModel.from_pretrained(args.model_name)
model.resize_token_embeddings(len(tokenizer))
model.to(device)
# Load and encode the datasets
def tokenize_and_encode(obj):
"""Tokenize and encode a nested object"""
if isinstance(obj, str):
return tokenizer.convert_tokens_to_ids(tokenizer.tokenize(obj))
elif isinstance(obj, int):
return obj
return [tokenize_and_encode(o) for o in obj]
logger.info("Encoding dataset...")
train_dataset = load_rocstories_dataset(args.train_dataset)
eval_dataset = load_rocstories_dataset(args.eval_dataset)
datasets = (train_dataset, eval_dataset)
encoded_datasets = tokenize_and_encode(datasets)
# Compute the max input length for the Transformer
max_length = model.config.n_positions // 2 - 2
input_length = max(
len(story[:max_length]) + max(len(cont1[:max_length]), len(cont2[:max_length])) + 3
for dataset in encoded_datasets
for story, cont1, cont2, _ in dataset
)
input_length = min(input_length, model.config.n_positions) # Max size of input for the pre-trained model
# Prepare inputs tensors and dataloaders
tensor_datasets = pre_process_datasets(encoded_datasets, input_length, max_length, *special_tokens_ids)
train_tensor_dataset, eval_tensor_dataset = tensor_datasets[0], tensor_datasets[1]
train_data = TensorDataset(*train_tensor_dataset)
train_sampler = RandomSampler(train_data)
train_dataloader = DataLoader(train_data, sampler=train_sampler, batch_size=args.train_batch_size)
eval_data = TensorDataset(*eval_tensor_dataset)
eval_sampler = SequentialSampler(eval_data)
eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=args.eval_batch_size)
# Prepare optimizer
if args.do_train:
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
param_optimizer = list(model.named_parameters())
no_decay = ["bias", "LayerNorm.bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in param_optimizer if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
if args.do_train:
nb_tr_steps, tr_loss, exp_average_loss = 0, 0, None
model.train()
for _ in trange(int(args.num_train_epochs), desc="Epoch"):
tr_loss = 0
nb_tr_steps = 0
tqdm_bar = tqdm(train_dataloader, desc="Training")
for step, batch in enumerate(tqdm_bar):
batch = tuple(t.to(device) for t in batch)
input_ids, mc_token_ids, lm_labels, mc_labels = batch
losses = model(input_ids, mc_token_ids=mc_token_ids, lm_labels=lm_labels, mc_labels=mc_labels)
loss = args.lm_coef * losses[0] + losses[1]
loss.backward()
optimizer.step()
scheduler.step()
optimizer.zero_grad()
tr_loss += loss.item()
exp_average_loss = (
loss.item() if exp_average_loss is None else 0.7 * exp_average_loss + 0.3 * loss.item()
)
nb_tr_steps += 1
tqdm_bar.desc = "Training loss: {:.2e} lr: {:.2e}".format(exp_average_loss, scheduler.get_lr()[0])
# Save a trained model
if args.do_train:
# Save a trained model, configuration and tokenizer
model_to_save = model.module if hasattr(model, "module") else model # Only save the model itself
# If we save using the predefined names, we can load using `from_pretrained`
output_model_file = os.path.join(args.output_dir, WEIGHTS_NAME)
output_config_file = os.path.join(args.output_dir, CONFIG_NAME)
torch.save(model_to_save.state_dict(), output_model_file)
model_to_save.config.to_json_file(output_config_file)
tokenizer.save_vocabulary(args.output_dir)
# Load a trained model and vocabulary that you have fine-tuned
model = OpenAIGPTDoubleHeadsModel.from_pretrained(args.output_dir)
tokenizer = OpenAIGPTTokenizer.from_pretrained(args.output_dir)
model.to(device)
if args.do_eval:
model.eval()
eval_loss, eval_accuracy = 0, 0
nb_eval_steps, nb_eval_examples = 0, 0
for batch in tqdm(eval_dataloader, desc="Evaluating"):
batch = tuple(t.to(device) for t in batch)
input_ids, mc_token_ids, lm_labels, mc_labels = batch
with torch.no_grad():
_, mc_loss, _, mc_logits = model(
input_ids, mc_token_ids=mc_token_ids, lm_labels=lm_labels, mc_labels=mc_labels
)
mc_logits = mc_logits.detach().cpu().numpy()
mc_labels = mc_labels.to("cpu").numpy()
tmp_eval_accuracy = accuracy(mc_logits, mc_labels)
eval_loss += mc_loss.mean().item()
eval_accuracy += tmp_eval_accuracy
nb_eval_examples += input_ids.size(0)
nb_eval_steps += 1
eval_loss = eval_loss / nb_eval_steps
eval_accuracy = eval_accuracy / nb_eval_examples
train_loss = tr_loss / nb_tr_steps if args.do_train else None
result = {"eval_loss": eval_loss, "eval_accuracy": eval_accuracy, "train_loss": train_loss}
output_eval_file = os.path.join(args.output_dir, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/run_openai_gpt.py |
#!/usr/bin/env python
import argparse
import json
from typing import List
from ltp import LTP
from transformers import BertTokenizer
def _is_chinese_char(cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def is_chinese(word: str):
# word like '180' or '身高' or '神'
for char in word:
char = ord(char)
if not _is_chinese_char(char):
return 0
return 1
def get_chinese_word(tokens: List[str]):
word_set = set()
for token in tokens:
chinese_word = len(token) > 1 and is_chinese(token)
if chinese_word:
word_set.add(token)
word_list = list(word_set)
return word_list
def add_sub_symbol(bert_tokens: List[str], chinese_word_set: set()):
if not chinese_word_set:
return bert_tokens
max_word_len = max([len(w) for w in chinese_word_set])
bert_word = bert_tokens
start, end = 0, len(bert_word)
while start < end:
single_word = True
if is_chinese(bert_word[start]):
l = min(end - start, max_word_len)
for i in range(l, 1, -1):
whole_word = "".join(bert_word[start : start + i])
if whole_word in chinese_word_set:
for j in range(start + 1, start + i):
bert_word[j] = "##" + bert_word[j]
start = start + i
single_word = False
break
if single_word:
start += 1
return bert_word
def prepare_ref(lines: List[str], ltp_tokenizer: LTP, bert_tokenizer: BertTokenizer):
ltp_res = []
for i in range(0, len(lines), 100):
res = ltp_tokenizer.seg(lines[i : i + 100])[0]
res = [get_chinese_word(r) for r in res]
ltp_res.extend(res)
assert len(ltp_res) == len(lines)
bert_res = []
for i in range(0, len(lines), 100):
res = bert_tokenizer(lines[i : i + 100], add_special_tokens=True, truncation=True, max_length=512)
bert_res.extend(res["input_ids"])
assert len(bert_res) == len(lines)
ref_ids = []
for input_ids, chinese_word in zip(bert_res, ltp_res):
input_tokens = []
for id in input_ids:
token = bert_tokenizer._convert_id_to_token(id)
input_tokens.append(token)
input_tokens = add_sub_symbol(input_tokens, chinese_word)
ref_id = []
# We only save pos of chinese subwords start with ##, which mean is part of a whole word.
for i, token in enumerate(input_tokens):
if token[:2] == "##":
clean_token = token[2:]
# save chinese tokens' pos
if len(clean_token) == 1 and _is_chinese_char(ord(clean_token)):
ref_id.append(i)
ref_ids.append(ref_id)
assert len(ref_ids) == len(bert_res)
return ref_ids
def main(args):
# For Chinese (Ro)Bert, the best result is from : RoBERTa-wwm-ext (https://github.com/ymcui/Chinese-BERT-wwm)
# If we want to fine-tune these model, we have to use same tokenizer : LTP (https://github.com/HIT-SCIR/ltp)
with open(args.file_name, "r", encoding="utf-8") as f:
data = f.readlines()
data = [line.strip() for line in data if len(line) > 0 and not line.isspace()] # avoid delimiter like '\u2029'
ltp_tokenizer = LTP(args.ltp) # faster in GPU device
bert_tokenizer = BertTokenizer.from_pretrained(args.bert)
ref_ids = prepare_ref(data, ltp_tokenizer, bert_tokenizer)
with open(args.save_path, "w", encoding="utf-8") as f:
data = [json.dumps(ref) + "\n" for ref in ref_ids]
f.writelines(data)
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="prepare_chinese_ref")
parser.add_argument(
"--file_name",
type=str,
default="./resources/chinese-demo.txt",
help="file need process, same as training data in lm",
)
parser.add_argument(
"--ltp", type=str, default="./resources/ltp", help="resources for LTP tokenizer, usually a path"
)
parser.add_argument("--bert", type=str, default="./resources/robert", help="resources for Bert tokenizer")
parser.add_argument("--save_path", type=str, default="./resources/ref.txt", help="path to save res")
args = parser.parse_args()
main(args)
| transformers-main | examples/legacy/run_chinese_ref.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""BERT finetuning runner.
Finetuning the library models for multiple choice on SWAG (Bert).
"""
import argparse
import csv
import glob
import logging
import os
import random
import numpy as np
import torch
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler, TensorDataset
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from transformers import (
WEIGHTS_NAME,
AdamW,
AutoConfig,
AutoModelForMultipleChoice,
AutoTokenizer,
get_linear_schedule_with_warmup,
)
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
class SwagExample(object):
"""A single training/test example for the SWAG dataset."""
def __init__(self, swag_id, context_sentence, start_ending, ending_0, ending_1, ending_2, ending_3, label=None):
self.swag_id = swag_id
self.context_sentence = context_sentence
self.start_ending = start_ending
self.endings = [
ending_0,
ending_1,
ending_2,
ending_3,
]
self.label = label
def __str__(self):
return self.__repr__()
def __repr__(self):
attributes = [
"swag_id: {}".format(self.swag_id),
"context_sentence: {}".format(self.context_sentence),
"start_ending: {}".format(self.start_ending),
"ending_0: {}".format(self.endings[0]),
"ending_1: {}".format(self.endings[1]),
"ending_2: {}".format(self.endings[2]),
"ending_3: {}".format(self.endings[3]),
]
if self.label is not None:
attributes.append("label: {}".format(self.label))
return ", ".join(attributes)
class InputFeatures(object):
def __init__(self, example_id, choices_features, label):
self.example_id = example_id
self.choices_features = [
{"input_ids": input_ids, "input_mask": input_mask, "segment_ids": segment_ids}
for _, input_ids, input_mask, segment_ids in choices_features
]
self.label = label
def read_swag_examples(input_file, is_training=True):
with open(input_file, "r", encoding="utf-8") as f:
lines = list(csv.reader(f))
if is_training and lines[0][-1] != "label":
raise ValueError("For training, the input file must contain a label column.")
examples = [
SwagExample(
swag_id=line[2],
context_sentence=line[4],
start_ending=line[5], # in the swag dataset, the
# common beginning of each
# choice is stored in "sent2".
ending_0=line[7],
ending_1=line[8],
ending_2=line[9],
ending_3=line[10],
label=int(line[11]) if is_training else None,
)
for line in lines[1:] # we skip the line with the column names
]
return examples
def convert_examples_to_features(examples, tokenizer, max_seq_length, is_training):
"""Loads a data file into a list of `InputBatch`s."""
# Swag is a multiple choice task. To perform this task using Bert,
# we will use the formatting proposed in "Improving Language
# Understanding by Generative Pre-Training" and suggested by
# @jacobdevlin-google in this issue
# https://github.com/google-research/bert/issues/38.
#
# Each choice will correspond to a sample on which we run the
# inference. For a given Swag example, we will create the 4
# following inputs:
# - [CLS] context [SEP] choice_1 [SEP]
# - [CLS] context [SEP] choice_2 [SEP]
# - [CLS] context [SEP] choice_3 [SEP]
# - [CLS] context [SEP] choice_4 [SEP]
# The model will output a single value for each input. To get the
# final decision of the model, we will run a softmax over these 4
# outputs.
features = []
for example_index, example in tqdm(enumerate(examples)):
context_tokens = tokenizer.tokenize(example.context_sentence)
start_ending_tokens = tokenizer.tokenize(example.start_ending)
choices_features = []
for ending_index, ending in enumerate(example.endings):
# We create a copy of the context tokens in order to be
# able to shrink it according to ending_tokens
context_tokens_choice = context_tokens[:]
ending_tokens = start_ending_tokens + tokenizer.tokenize(ending)
# Modifies `context_tokens_choice` and `ending_tokens` in
# place so that the total length is less than the
# specified length. Account for [CLS], [SEP], [SEP] with
# "- 3"
_truncate_seq_pair(context_tokens_choice, ending_tokens, max_seq_length - 3)
tokens = ["[CLS]"] + context_tokens_choice + ["[SEP]"] + ending_tokens + ["[SEP]"]
segment_ids = [0] * (len(context_tokens_choice) + 2) + [1] * (len(ending_tokens) + 1)
input_ids = tokenizer.convert_tokens_to_ids(tokens)
input_mask = [1] * len(input_ids)
# Zero-pad up to the sequence length.
padding = [0] * (max_seq_length - len(input_ids))
input_ids += padding
input_mask += padding
segment_ids += padding
assert len(input_ids) == max_seq_length
assert len(input_mask) == max_seq_length
assert len(segment_ids) == max_seq_length
choices_features.append((tokens, input_ids, input_mask, segment_ids))
label = example.label
if example_index < 5:
logger.info("*** Example ***")
logger.info("swag_id: {}".format(example.swag_id))
for choice_idx, (tokens, input_ids, input_mask, segment_ids) in enumerate(choices_features):
logger.info("choice: {}".format(choice_idx))
logger.info("tokens: {}".format(" ".join(tokens)))
logger.info("input_ids: {}".format(" ".join(map(str, input_ids))))
logger.info("input_mask: {}".format(" ".join(map(str, input_mask))))
logger.info("segment_ids: {}".format(" ".join(map(str, segment_ids))))
if is_training:
logger.info("label: {}".format(label))
features.append(InputFeatures(example_id=example.swag_id, choices_features=choices_features, label=label))
return features
def _truncate_seq_pair(tokens_a, tokens_b, max_length):
"""Truncates a sequence pair in place to the maximum length."""
# This is a simple heuristic which will always truncate the longer sequence
# one token at a time. This makes more sense than truncating an equal percent
# of tokens from each, since if one sequence is very short then each token
# that's truncated likely contains more information than a longer sequence.
while True:
total_length = len(tokens_a) + len(tokens_b)
if total_length <= max_length:
break
if len(tokens_a) > len(tokens_b):
tokens_a.pop()
else:
tokens_b.pop()
def accuracy(out, labels):
outputs = np.argmax(out, axis=1)
return np.sum(outputs == labels)
def select_field(features, field):
return [[choice[field] for choice in feature.choices_features] for feature in features]
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False):
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Load data features from cache or dataset file
input_file = args.predict_file if evaluate else args.train_file
cached_features_file = os.path.join(
os.path.dirname(input_file),
"cached_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache and not output_examples:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", input_file)
examples = read_swag_examples(input_file)
features = convert_examples_to_features(examples, tokenizer, args.max_seq_length, not evaluate)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training process the dataset, and the others will use the cache
# Convert to Tensors and build dataset
all_input_ids = torch.tensor(select_field(features, "input_ids"), dtype=torch.long)
all_input_mask = torch.tensor(select_field(features, "input_mask"), dtype=torch.long)
all_segment_ids = torch.tensor(select_field(features, "segment_ids"), dtype=torch.long)
all_label = torch.tensor([f.label for f in features], dtype=torch.long)
if evaluate:
dataset = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label)
else:
dataset = TensorDataset(all_input_ids, all_input_mask, all_segment_ids, all_label)
if output_examples:
return dataset, examples, features
return dataset
def train(args, train_dataset, model, tokenizer):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = torch.nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = torch.nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0])
set_seed(args) # Added here for reproductibility
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
# 'token_type_ids': None if args.model_type == 'xlm' else batch[2],
"token_type_ids": batch[2],
"labels": batch[3],
}
# if args.model_type in ['xlnet', 'xlm']:
# inputs.update({'cls_index': batch[5],
# 'p_mask': batch[6]})
outputs = model(**inputs)
loss = outputs[0] # model outputs are always tuple in transformers (see doc)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel (not distributed) training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
torch.nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
loss.backward()
torch.nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Log metrics
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
tb_writer.add_scalar("lr", scheduler.get_lr()[0], global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
logging_loss = tr_loss
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
tokenizer.save_vocabulary(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
dataset, examples, features = load_and_cache_examples(args, tokenizer, evaluate=True, output_examples=True)
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(dataset) if args.local_rank == -1 else DistributedSampler(dataset)
eval_dataloader = DataLoader(dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss, eval_accuracy = 0, 0
nb_eval_steps, nb_eval_examples = 0, 0
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
# 'token_type_ids': None if args.model_type == 'xlm' else batch[2] # XLM don't use segment_ids
"token_type_ids": batch[2],
"labels": batch[3],
}
# if args.model_type in ['xlnet', 'xlm']:
# inputs.update({'cls_index': batch[4],
# 'p_mask': batch[5]})
outputs = model(**inputs)
tmp_eval_loss, logits = outputs[:2]
eval_loss += tmp_eval_loss.mean().item()
logits = logits.detach().cpu().numpy()
label_ids = inputs["labels"].to("cpu").numpy()
tmp_eval_accuracy = accuracy(logits, label_ids)
eval_accuracy += tmp_eval_accuracy
nb_eval_steps += 1
nb_eval_examples += inputs["input_ids"].size(0)
eval_loss = eval_loss / nb_eval_steps
eval_accuracy = eval_accuracy / nb_eval_examples
result = {"eval_loss": eval_loss, "eval_accuracy": eval_accuracy}
output_eval_file = os.path.join(args.output_dir, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key in sorted(result.keys()):
logger.info("%s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return result
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--train_file", default=None, type=str, required=True, help="SWAG csv for training. E.g., train.csv"
)
parser.add_argument(
"--predict_file",
default=None,
type=str,
required=True,
help="SWAG csv for predictions. E.g., val.csv or test.csv",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model checkpoints and predictions will be written.",
)
# Other parameters
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--max_seq_length",
default=384,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences "
"longer than this will be truncated, and sequences shorter than this will be padded."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Rul evaluation during training at each logging step."
)
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight deay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
config = AutoConfig.from_pretrained(args.config_name if args.config_name else args.model_name_or_path)
tokenizer = AutoTokenizer.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
)
model = AutoModelForMultipleChoice.from_pretrained(
args.model_name_or_path, from_tf=bool(".ckpt" in args.model_name_or_path), config=config
)
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Save the trained model and the tokenizer
if args.local_rank == -1 or torch.distributed.get_rank() == 0:
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = AutoModelForMultipleChoice.from_pretrained(args.output_dir)
tokenizer = AutoTokenizer.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation - we can ask to evaluate all the checkpoints (sub-directories) in a directory
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
if args.do_train:
checkpoints = [args.output_dir]
else:
# if do_train is False and do_eval is true, load model directly from pretrained.
checkpoints = [args.model_name_or_path]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
# Reload the model
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
model = AutoModelForMultipleChoice.from_pretrained(checkpoint)
tokenizer = AutoTokenizer.from_pretrained(checkpoint)
model.to(args.device)
# Evaluate
result = evaluate(args, model, tokenizer, prefix=global_step)
result = {k + ("_{}".format(global_step) if global_step else ""): v for k, v in result.items()}
results.update(result)
logger.info("Results: {}".format(results))
return results
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/run_swag.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning the library models for question-answering on SQuAD (DistilBERT, Bert, XLM, XLNet)."""
import argparse
import glob
import logging
import os
import random
import timeit
import numpy as np
import torch
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from transformers import (
MODEL_FOR_QUESTION_ANSWERING_MAPPING,
WEIGHTS_NAME,
AdamW,
AutoConfig,
AutoModelForQuestionAnswering,
AutoTokenizer,
get_linear_schedule_with_warmup,
squad_convert_examples_to_features,
)
from transformers.data.metrics.squad_metrics import (
compute_predictions_log_probs,
compute_predictions_logits,
squad_evaluate,
)
from transformers.data.processors.squad import SquadResult, SquadV1Processor, SquadV2Processor
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CONFIG_CLASSES = list(MODEL_FOR_QUESTION_ANSWERING_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def to_list(tensor):
return tensor.detach().cpu().tolist()
def train(args, train_dataset, model, tokenizer):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = torch.nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = torch.nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 1
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
try:
# set global_step to gobal_step of last saved checkpoint from model path
checkpoint_suffix = args.model_name_or_path.split("-")[-1].split("/")[0]
global_step = int(checkpoint_suffix)
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(" Will skip the first %d steps in the first epoch", steps_trained_in_current_epoch)
except ValueError:
logger.info(" Starting fine-tuning.")
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained, int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0]
)
# Added here for reproductibility
set_seed(args)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
batch = tuple(t.to(args.device) for t in batch)
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"token_type_ids": batch[2],
"start_positions": batch[3],
"end_positions": batch[4],
}
if args.model_type in ["xlm", "roberta", "distilbert", "camembert", "bart", "longformer"]:
del inputs["token_type_ids"]
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[5], "p_mask": batch[6]})
if args.version_2_with_negative:
inputs.update({"is_impossible": batch[7]})
if hasattr(model, "config") and hasattr(model.config, "lang2id"):
inputs.update(
{"langs": (torch.ones(batch[0].shape, dtype=torch.int64) * args.lang_id).to(args.device)}
)
outputs = model(**inputs)
# model outputs are always tuple in transformers (see doc)
loss = outputs[0]
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel (not distributed) training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
torch.nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
torch.nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
# Log metrics
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Only evaluate when single GPU otherwise metrics may not average well
if args.local_rank == -1 and args.evaluate_during_training:
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
tb_writer.add_scalar("lr", scheduler.get_lr()[0], global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
logging_loss = tr_loss
# Save model checkpoint
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
dataset, examples, features = load_and_cache_examples(args, tokenizer, evaluate=True, output_examples=True)
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(dataset)
eval_dataloader = DataLoader(dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu evaluate
if args.n_gpu > 1 and not isinstance(model, torch.nn.DataParallel):
model = torch.nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
all_results = []
start_time = timeit.default_timer()
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"token_type_ids": batch[2],
}
if args.model_type in ["xlm", "roberta", "distilbert", "camembert", "bart", "longformer"]:
del inputs["token_type_ids"]
feature_indices = batch[3]
# XLNet and XLM use more arguments for their predictions
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[4], "p_mask": batch[5]})
# for lang_id-sensitive xlm models
if hasattr(model, "config") and hasattr(model.config, "lang2id"):
inputs.update(
{"langs": (torch.ones(batch[0].shape, dtype=torch.int64) * args.lang_id).to(args.device)}
)
outputs = model(**inputs)
for i, feature_index in enumerate(feature_indices):
eval_feature = features[feature_index.item()]
unique_id = int(eval_feature.unique_id)
output = [to_list(output[i]) for output in outputs.to_tuple()]
# Some models (XLNet, XLM) use 5 arguments for their predictions, while the other "simpler"
# models only use two.
if len(output) >= 5:
start_logits = output[0]
start_top_index = output[1]
end_logits = output[2]
end_top_index = output[3]
cls_logits = output[4]
result = SquadResult(
unique_id,
start_logits,
end_logits,
start_top_index=start_top_index,
end_top_index=end_top_index,
cls_logits=cls_logits,
)
else:
start_logits, end_logits = output
result = SquadResult(unique_id, start_logits, end_logits)
all_results.append(result)
evalTime = timeit.default_timer() - start_time
logger.info(" Evaluation done in total %f secs (%f sec per example)", evalTime, evalTime / len(dataset))
# Compute predictions
output_prediction_file = os.path.join(args.output_dir, "predictions_{}.json".format(prefix))
output_nbest_file = os.path.join(args.output_dir, "nbest_predictions_{}.json".format(prefix))
if args.version_2_with_negative:
output_null_log_odds_file = os.path.join(args.output_dir, "null_odds_{}.json".format(prefix))
else:
output_null_log_odds_file = None
# XLNet and XLM use a more complex post-processing procedure
if args.model_type in ["xlnet", "xlm"]:
start_n_top = model.config.start_n_top if hasattr(model, "config") else model.module.config.start_n_top
end_n_top = model.config.end_n_top if hasattr(model, "config") else model.module.config.end_n_top
predictions = compute_predictions_log_probs(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
start_n_top,
end_n_top,
args.version_2_with_negative,
tokenizer,
args.verbose_logging,
)
else:
predictions = compute_predictions_logits(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
args.do_lower_case,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
args.verbose_logging,
args.version_2_with_negative,
args.null_score_diff_threshold,
tokenizer,
)
# Compute the F1 and exact scores.
results = squad_evaluate(examples, predictions)
return results
def load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False):
if args.local_rank not in [-1, 0] and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
# Load data features from cache or dataset file
input_dir = args.data_dir if args.data_dir else "."
cached_features_file = os.path.join(
input_dir,
"cached_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
),
)
# Init features and dataset from cache if it exists
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features_and_dataset = torch.load(cached_features_file)
features, dataset, examples = (
features_and_dataset["features"],
features_and_dataset["dataset"],
features_and_dataset["examples"],
)
else:
logger.info("Creating features from dataset file at %s", input_dir)
if not args.data_dir and ((evaluate and not args.predict_file) or (not evaluate and not args.train_file)):
try:
import tensorflow_datasets as tfds
except ImportError:
raise ImportError("If not data_dir is specified, tensorflow_datasets needs to be installed.")
if args.version_2_with_negative:
logger.warning("tensorflow_datasets does not handle version 2 of SQuAD.")
tfds_examples = tfds.load("squad")
examples = SquadV1Processor().get_examples_from_dataset(tfds_examples, evaluate=evaluate)
else:
processor = SquadV2Processor() if args.version_2_with_negative else SquadV1Processor()
if evaluate:
examples = processor.get_dev_examples(args.data_dir, filename=args.predict_file)
else:
examples = processor.get_train_examples(args.data_dir, filename=args.train_file)
features, dataset = squad_convert_examples_to_features(
examples=examples,
tokenizer=tokenizer,
max_seq_length=args.max_seq_length,
doc_stride=args.doc_stride,
max_query_length=args.max_query_length,
is_training=not evaluate,
return_dataset="pt",
threads=args.threads,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save({"features": features, "dataset": dataset, "examples": examples}, cached_features_file)
if args.local_rank == 0 and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
if output_examples:
return dataset, examples, features
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_TYPES),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model checkpoints and predictions will be written.",
)
# Other parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
help="The input data dir. Should contain the .json files for the task."
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--train_file",
default=None,
type=str,
help="The input training file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--predict_file",
default=None,
type=str,
help="The input evaluation file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--version_2_with_negative",
action="store_true",
help="If true, the SQuAD examples contain some that do not have an answer.",
)
parser.add_argument(
"--null_score_diff_threshold",
type=float,
default=0.0,
help="If null_score - best_non_null is greater than the threshold predict null.",
)
parser.add_argument(
"--max_seq_length",
default=384,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. Sequences "
"longer than this will be truncated, and sequences shorter than this will be padded."
),
)
parser.add_argument(
"--doc_stride",
default=128,
type=int,
help="When splitting up a long document into chunks, how much stride to take between chunks.",
)
parser.add_argument(
"--max_query_length",
default=64,
type=int,
help=(
"The maximum number of tokens for the question. Questions longer than this will "
"be truncated to this length."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Run evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument(
"--n_best_size",
default=20,
type=int,
help="The total number of n-best predictions to generate in the nbest_predictions.json output file.",
)
parser.add_argument(
"--max_answer_length",
default=30,
type=int,
help=(
"The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another."
),
)
parser.add_argument(
"--verbose_logging",
action="store_true",
help=(
"If true, all of the warnings related to data processing will be printed. "
"A number of warnings are expected for a normal SQuAD evaluation."
),
)
parser.add_argument(
"--lang_id",
default=0,
type=int,
help=(
"language id of input for language-specific xlm models (see"
" tokenization_xlm.PRETRAINED_INIT_CONFIGURATION)"
),
)
parser.add_argument("--logging_steps", type=int, default=500, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=500, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--threads", type=int, default=1, help="multiple threads for converting example to features")
args = parser.parse_args()
if args.doc_stride >= args.max_seq_length - args.max_query_length:
logger.warning(
"WARNING - You've set a doc stride which may be superior to the document length in some "
"examples. This could result in errors when building features from the examples. Please reduce the doc "
"stride or increase the maximum length to ensure the features are correctly built."
)
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
args.model_type = args.model_type.lower()
config = AutoConfig.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = AutoTokenizer.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
use_fast=False, # SquadDataset is not compatible with Fast tokenizers which have a smarter overflow handeling
)
model = AutoModelForQuestionAnswering.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.local_rank == 0:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Before we do anything with models, we want to ensure that we get fp16 execution of torch.einsum if args.fp16 is set.
# Otherwise it'll default to "promote" mode, and we'll get fp32 operations. Note that running `--fp16_opt_level="O2"` will
# remove the need for this code, but it is still valid.
if args.fp16:
try:
import apex
apex.amp.register_half_function(torch, "einsum")
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Save the trained model and the tokenizer
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
# Take care of distributed/parallel training
model_to_save = model.module if hasattr(model, "module") else model
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = AutoModelForQuestionAnswering.from_pretrained(args.output_dir) # , force_download=True)
# SquadDataset is not compatible with Fast tokenizers which have a smarter overflow handeling
# So we use use_fast=False here for now until Fast-tokenizer-compatible-examples are out
tokenizer = AutoTokenizer.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case, use_fast=False)
model.to(args.device)
# Evaluation - we can ask to evaluate all the checkpoints (sub-directories) in a directory
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
if args.do_train:
logger.info("Loading checkpoints saved during training for evaluation")
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c)
for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
else:
logger.info("Loading checkpoint %s for evaluation", args.model_name_or_path)
checkpoints = [args.model_name_or_path]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
# Reload the model
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
model = AutoModelForQuestionAnswering.from_pretrained(checkpoint) # , force_download=True)
model.to(args.device)
# Evaluate
result = evaluate(args, model, tokenizer, prefix=global_step)
result = {k + ("_{}".format(global_step) if global_step else ""): v for k, v in result.items()}
results.update(result)
logger.info("Results: {}".format(results))
return results
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/question-answering/run_squad.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-tuning the library models for question-answering."""
import logging
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
import transformers
from transformers import (
AutoConfig,
AutoModelForQuestionAnswering,
AutoTokenizer,
DataCollatorWithPadding,
HfArgumentParser,
SquadDataset,
Trainer,
TrainingArguments,
)
from transformers import SquadDataTrainingArguments as DataTrainingArguments
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_fast: bool = field(default=False, metadata={"help": "Set this flag to use fast tokenization."})
# If you want to tweak more attributes on your tokenizer, you should do it in a distinct script,
# or just modify its tokenizer_config.json.
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use"
" --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
training_args.local_rank,
training_args.device,
training_args.n_gpu,
bool(training_args.local_rank != -1),
training_args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Prepare Question-Answering task
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=False, # SquadDataset is not compatible with Fast tokenizers which have a smarter overflow handeling
)
model = AutoModelForQuestionAnswering.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
# Get datasets
is_language_sensitive = hasattr(model.config, "lang2id")
train_dataset = (
SquadDataset(
data_args, tokenizer=tokenizer, is_language_sensitive=is_language_sensitive, cache_dir=model_args.cache_dir
)
if training_args.do_train
else None
)
eval_dataset = (
SquadDataset(
data_args,
tokenizer=tokenizer,
mode="dev",
is_language_sensitive=is_language_sensitive,
cache_dir=model_args.cache_dir,
)
if training_args.do_eval
else None
)
# Data collator
data_collator = DataCollatorWithPadding(tokenizer, pad_to_multiple_of=8) if training_args.fp16 else None
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
data_collator=data_collator,
)
# Training
if training_args.do_train:
trainer.train(
model_path=model_args.model_name_or_path if os.path.isdir(model_args.model_name_or_path) else None
)
trainer.save_model()
# For convenience, we also re-save the tokenizer to the same directory,
# so that you can share your model easily on huggingface.co/models =)
if trainer.is_world_master():
tokenizer.save_pretrained(training_args.output_dir)
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/question-answering/run_squad_trainer.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning the library models for multiple choice (Bert, Roberta, XLNet)."""
import logging
import os
from dataclasses import dataclass, field
from typing import Dict, Optional
import numpy as np
from utils_multiple_choice import MultipleChoiceDataset, Split, processors
import transformers
from transformers import (
AutoConfig,
AutoModelForMultipleChoice,
AutoTokenizer,
DataCollatorWithPadding,
EvalPrediction,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
def simple_accuracy(preds, labels):
return (preds == labels).mean()
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
task_name: str = field(metadata={"help": "The name of the task to train on: " + ", ".join(processors.keys())})
data_dir: str = field(metadata={"help": "Should contain the data files for the task."})
max_seq_length: int = field(
default=128,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use"
" --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
training_args.local_rank,
training_args.device,
training_args.n_gpu,
bool(training_args.local_rank != -1),
training_args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed
set_seed(training_args.seed)
try:
processor = processors[data_args.task_name]()
label_list = processor.get_labels()
num_labels = len(label_list)
except KeyError:
raise ValueError("Task not found: %s" % (data_args.task_name))
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
finetuning_task=data_args.task_name,
cache_dir=model_args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
model = AutoModelForMultipleChoice.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
# Get datasets
train_dataset = (
MultipleChoiceDataset(
data_dir=data_args.data_dir,
tokenizer=tokenizer,
task=data_args.task_name,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.train,
)
if training_args.do_train
else None
)
eval_dataset = (
MultipleChoiceDataset(
data_dir=data_args.data_dir,
tokenizer=tokenizer,
task=data_args.task_name,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.dev,
)
if training_args.do_eval
else None
)
def compute_metrics(p: EvalPrediction) -> Dict:
preds = np.argmax(p.predictions, axis=1)
return {"acc": simple_accuracy(preds, p.label_ids)}
# Data collator
data_collator = DataCollatorWithPadding(tokenizer, pad_to_multiple_of=8) if training_args.fp16 else None
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
compute_metrics=compute_metrics,
data_collator=data_collator,
)
# Training
if training_args.do_train:
trainer.train(
model_path=model_args.model_name_or_path if os.path.isdir(model_args.model_name_or_path) else None
)
trainer.save_model()
# For convenience, we also re-save the tokenizer to the same directory,
# so that you can share your model easily on huggingface.co/models =)
if trainer.is_world_master():
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
result = trainer.evaluate()
output_eval_file = os.path.join(training_args.output_dir, "eval_results.txt")
if trainer.is_world_master():
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key, value in result.items():
logger.info(" %s = %s", key, value)
writer.write("%s = %s\n" % (key, value))
results.update(result)
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/multiple_choice/run_multiple_choice.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Multiple choice fine-tuning: utilities to work with multiple choice tasks of reading comprehension """
import csv
import glob
import json
import logging
import os
from dataclasses import dataclass
from enum import Enum
from typing import List, Optional
import tqdm
from filelock import FileLock
from transformers import PreTrainedTokenizer, is_tf_available, is_torch_available
logger = logging.getLogger(__name__)
@dataclass(frozen=True)
class InputExample:
"""
A single training/test example for multiple choice
Args:
example_id: Unique id for the example.
question: string. The untokenized text of the second sequence (question).
contexts: list of str. The untokenized text of the first sequence (context of corresponding question).
endings: list of str. multiple choice's options. Its length must be equal to contexts' length.
label: (Optional) string. The label of the example. This should be
specified for train and dev examples, but not for test examples.
"""
example_id: str
question: str
contexts: List[str]
endings: List[str]
label: Optional[str]
@dataclass(frozen=True)
class InputFeatures:
"""
A single set of features of data.
Property names are the same names as the corresponding inputs to a model.
"""
example_id: str
input_ids: List[List[int]]
attention_mask: Optional[List[List[int]]]
token_type_ids: Optional[List[List[int]]]
label: Optional[int]
class Split(Enum):
train = "train"
dev = "dev"
test = "test"
if is_torch_available():
import torch
from torch.utils.data import Dataset
class MultipleChoiceDataset(Dataset):
"""
This will be superseded by a framework-agnostic approach
soon.
"""
features: List[InputFeatures]
def __init__(
self,
data_dir: str,
tokenizer: PreTrainedTokenizer,
task: str,
max_seq_length: Optional[int] = None,
overwrite_cache=False,
mode: Split = Split.train,
):
processor = processors[task]()
cached_features_file = os.path.join(
data_dir,
"cached_{}_{}_{}_{}".format(
mode.value,
tokenizer.__class__.__name__,
str(max_seq_length),
task,
),
)
# Make sure only the first process in distributed training processes the dataset,
# and the others will use the cache.
lock_path = cached_features_file + ".lock"
with FileLock(lock_path):
if os.path.exists(cached_features_file) and not overwrite_cache:
logger.info(f"Loading features from cached file {cached_features_file}")
self.features = torch.load(cached_features_file)
else:
logger.info(f"Creating features from dataset file at {data_dir}")
label_list = processor.get_labels()
if mode == Split.dev:
examples = processor.get_dev_examples(data_dir)
elif mode == Split.test:
examples = processor.get_test_examples(data_dir)
else:
examples = processor.get_train_examples(data_dir)
logger.info("Training examples: %s", len(examples))
self.features = convert_examples_to_features(
examples,
label_list,
max_seq_length,
tokenizer,
)
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(self.features, cached_features_file)
def __len__(self):
return len(self.features)
def __getitem__(self, i) -> InputFeatures:
return self.features[i]
if is_tf_available():
import tensorflow as tf
class TFMultipleChoiceDataset:
"""
This will be superseded by a framework-agnostic approach
soon.
"""
features: List[InputFeatures]
def __init__(
self,
data_dir: str,
tokenizer: PreTrainedTokenizer,
task: str,
max_seq_length: Optional[int] = 128,
overwrite_cache=False,
mode: Split = Split.train,
):
processor = processors[task]()
logger.info(f"Creating features from dataset file at {data_dir}")
label_list = processor.get_labels()
if mode == Split.dev:
examples = processor.get_dev_examples(data_dir)
elif mode == Split.test:
examples = processor.get_test_examples(data_dir)
else:
examples = processor.get_train_examples(data_dir)
logger.info("Training examples: %s", len(examples))
self.features = convert_examples_to_features(
examples,
label_list,
max_seq_length,
tokenizer,
)
def gen():
for ex_index, ex in tqdm.tqdm(enumerate(self.features), desc="convert examples to features"):
if ex_index % 10000 == 0:
logger.info("Writing example %d of %d" % (ex_index, len(examples)))
yield (
{
"example_id": 0,
"input_ids": ex.input_ids,
"attention_mask": ex.attention_mask,
"token_type_ids": ex.token_type_ids,
},
ex.label,
)
self.dataset = tf.data.Dataset.from_generator(
gen,
(
{
"example_id": tf.int32,
"input_ids": tf.int32,
"attention_mask": tf.int32,
"token_type_ids": tf.int32,
},
tf.int64,
),
(
{
"example_id": tf.TensorShape([]),
"input_ids": tf.TensorShape([None, None]),
"attention_mask": tf.TensorShape([None, None]),
"token_type_ids": tf.TensorShape([None, None]),
},
tf.TensorShape([]),
),
)
def get_dataset(self):
self.dataset = self.dataset.apply(tf.data.experimental.assert_cardinality(len(self.features)))
return self.dataset
def __len__(self):
return len(self.features)
def __getitem__(self, i) -> InputFeatures:
return self.features[i]
class DataProcessor:
"""Base class for data converters for multiple choice data sets."""
def get_train_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the train set."""
raise NotImplementedError()
def get_dev_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the dev set."""
raise NotImplementedError()
def get_test_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the test set."""
raise NotImplementedError()
def get_labels(self):
"""Gets the list of labels for this data set."""
raise NotImplementedError()
class RaceProcessor(DataProcessor):
"""Processor for the RACE data set."""
def get_train_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} train".format(data_dir))
high = os.path.join(data_dir, "train/high")
middle = os.path.join(data_dir, "train/middle")
high = self._read_txt(high)
middle = self._read_txt(middle)
return self._create_examples(high + middle, "train")
def get_dev_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} dev".format(data_dir))
high = os.path.join(data_dir, "dev/high")
middle = os.path.join(data_dir, "dev/middle")
high = self._read_txt(high)
middle = self._read_txt(middle)
return self._create_examples(high + middle, "dev")
def get_test_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} test".format(data_dir))
high = os.path.join(data_dir, "test/high")
middle = os.path.join(data_dir, "test/middle")
high = self._read_txt(high)
middle = self._read_txt(middle)
return self._create_examples(high + middle, "test")
def get_labels(self):
"""See base class."""
return ["0", "1", "2", "3"]
def _read_txt(self, input_dir):
lines = []
files = glob.glob(input_dir + "/*txt")
for file in tqdm.tqdm(files, desc="read files"):
with open(file, "r", encoding="utf-8") as fin:
data_raw = json.load(fin)
data_raw["race_id"] = file
lines.append(data_raw)
return lines
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for _, data_raw in enumerate(lines):
race_id = "%s-%s" % (set_type, data_raw["race_id"])
article = data_raw["article"]
for i in range(len(data_raw["answers"])):
truth = str(ord(data_raw["answers"][i]) - ord("A"))
question = data_raw["questions"][i]
options = data_raw["options"][i]
examples.append(
InputExample(
example_id=race_id,
question=question,
contexts=[article, article, article, article], # this is not efficient but convenient
endings=[options[0], options[1], options[2], options[3]],
label=truth,
)
)
return examples
class SynonymProcessor(DataProcessor):
"""Processor for the Synonym data set."""
def get_train_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} train".format(data_dir))
return self._create_examples(self._read_csv(os.path.join(data_dir, "mctrain.csv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} dev".format(data_dir))
return self._create_examples(self._read_csv(os.path.join(data_dir, "mchp.csv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} dev".format(data_dir))
return self._create_examples(self._read_csv(os.path.join(data_dir, "mctest.csv")), "test")
def get_labels(self):
"""See base class."""
return ["0", "1", "2", "3", "4"]
def _read_csv(self, input_file):
with open(input_file, "r", encoding="utf-8") as f:
return list(csv.reader(f))
def _create_examples(self, lines: List[List[str]], type: str):
"""Creates examples for the training and dev sets."""
examples = [
InputExample(
example_id=line[0],
question="", # in the swag dataset, the
# common beginning of each
# choice is stored in "sent2".
contexts=[line[1], line[1], line[1], line[1], line[1]],
endings=[line[2], line[3], line[4], line[5], line[6]],
label=line[7],
)
for line in lines # we skip the line with the column names
]
return examples
class SwagProcessor(DataProcessor):
"""Processor for the SWAG data set."""
def get_train_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} train".format(data_dir))
return self._create_examples(self._read_csv(os.path.join(data_dir, "train.csv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} dev".format(data_dir))
return self._create_examples(self._read_csv(os.path.join(data_dir, "val.csv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} dev".format(data_dir))
raise ValueError(
"For swag testing, the input file does not contain a label column. It can not be tested in current code"
"setting!"
)
return self._create_examples(self._read_csv(os.path.join(data_dir, "test.csv")), "test")
def get_labels(self):
"""See base class."""
return ["0", "1", "2", "3"]
def _read_csv(self, input_file):
with open(input_file, "r", encoding="utf-8") as f:
return list(csv.reader(f))
def _create_examples(self, lines: List[List[str]], type: str):
"""Creates examples for the training and dev sets."""
if type == "train" and lines[0][-1] != "label":
raise ValueError("For training, the input file must contain a label column.")
examples = [
InputExample(
example_id=line[2],
question=line[5], # in the swag dataset, the
# common beginning of each
# choice is stored in "sent2".
contexts=[line[4], line[4], line[4], line[4]],
endings=[line[7], line[8], line[9], line[10]],
label=line[11],
)
for line in lines[1:] # we skip the line with the column names
]
return examples
class ArcProcessor(DataProcessor):
"""Processor for the ARC data set (request from allennlp)."""
def get_train_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} train".format(data_dir))
return self._create_examples(self._read_json(os.path.join(data_dir, "train.jsonl")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
logger.info("LOOKING AT {} dev".format(data_dir))
return self._create_examples(self._read_json(os.path.join(data_dir, "dev.jsonl")), "dev")
def get_test_examples(self, data_dir):
logger.info("LOOKING AT {} test".format(data_dir))
return self._create_examples(self._read_json(os.path.join(data_dir, "test.jsonl")), "test")
def get_labels(self):
"""See base class."""
return ["0", "1", "2", "3"]
def _read_json(self, input_file):
with open(input_file, "r", encoding="utf-8") as fin:
lines = fin.readlines()
return lines
def _create_examples(self, lines, type):
"""Creates examples for the training and dev sets."""
# There are two types of labels. They should be normalized
def normalize(truth):
if truth in "ABCD":
return ord(truth) - ord("A")
elif truth in "1234":
return int(truth) - 1
else:
logger.info("truth ERROR! %s", str(truth))
return None
examples = []
three_choice = 0
four_choice = 0
five_choice = 0
other_choices = 0
# we deleted example which has more than or less than four choices
for line in tqdm.tqdm(lines, desc="read arc data"):
data_raw = json.loads(line.strip("\n"))
if len(data_raw["question"]["choices"]) == 3:
three_choice += 1
continue
elif len(data_raw["question"]["choices"]) == 5:
five_choice += 1
continue
elif len(data_raw["question"]["choices"]) != 4:
other_choices += 1
continue
four_choice += 1
truth = str(normalize(data_raw["answerKey"]))
assert truth != "None"
question_choices = data_raw["question"]
question = question_choices["stem"]
id = data_raw["id"]
options = question_choices["choices"]
if len(options) == 4:
examples.append(
InputExample(
example_id=id,
question=question,
contexts=[
options[0]["para"].replace("_", ""),
options[1]["para"].replace("_", ""),
options[2]["para"].replace("_", ""),
options[3]["para"].replace("_", ""),
],
endings=[options[0]["text"], options[1]["text"], options[2]["text"], options[3]["text"]],
label=truth,
)
)
if type == "train":
assert len(examples) > 1
assert examples[0].label is not None
logger.info("len examples: %s}", str(len(examples)))
logger.info("Three choices: %s", str(three_choice))
logger.info("Five choices: %s", str(five_choice))
logger.info("Other choices: %s", str(other_choices))
logger.info("four choices: %s", str(four_choice))
return examples
def convert_examples_to_features(
examples: List[InputExample],
label_list: List[str],
max_length: int,
tokenizer: PreTrainedTokenizer,
) -> List[InputFeatures]:
"""
Loads a data file into a list of `InputFeatures`
"""
label_map = {label: i for i, label in enumerate(label_list)}
features = []
for ex_index, example in tqdm.tqdm(enumerate(examples), desc="convert examples to features"):
if ex_index % 10000 == 0:
logger.info("Writing example %d of %d" % (ex_index, len(examples)))
choices_inputs = []
for ending_idx, (context, ending) in enumerate(zip(example.contexts, example.endings)):
text_a = context
if example.question.find("_") != -1:
# this is for cloze question
text_b = example.question.replace("_", ending)
else:
text_b = example.question + " " + ending
inputs = tokenizer(
text_a,
text_b,
add_special_tokens=True,
max_length=max_length,
padding="max_length",
truncation=True,
return_overflowing_tokens=True,
)
if "num_truncated_tokens" in inputs and inputs["num_truncated_tokens"] > 0:
logger.info(
"Attention! you are cropping tokens (swag task is ok). "
"If you are training ARC and RACE and you are poping question + options,"
"you need to try to use a bigger max seq length!"
)
choices_inputs.append(inputs)
label = label_map[example.label]
input_ids = [x["input_ids"] for x in choices_inputs]
attention_mask = (
[x["attention_mask"] for x in choices_inputs] if "attention_mask" in choices_inputs[0] else None
)
token_type_ids = (
[x["token_type_ids"] for x in choices_inputs] if "token_type_ids" in choices_inputs[0] else None
)
features.append(
InputFeatures(
example_id=example.example_id,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
label=label,
)
)
for f in features[:2]:
logger.info("*** Example ***")
logger.info("feature: %s" % f)
return features
processors = {"race": RaceProcessor, "swag": SwagProcessor, "arc": ArcProcessor, "syn": SynonymProcessor}
MULTIPLE_CHOICE_TASKS_NUM_LABELS = {"race", 4, "swag", 4, "arc", 4, "syn", 5}
| transformers-main | examples/legacy/multiple_choice/utils_multiple_choice.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-tuning the library models for sequence classification."""
import logging
import os
from dataclasses import dataclass, field
from typing import Dict, Optional
import datasets
import numpy as np
import tensorflow as tf
from transformers import (
AutoConfig,
AutoTokenizer,
EvalPrediction,
HfArgumentParser,
PreTrainedTokenizer,
TFAutoModelForSequenceClassification,
TFTrainer,
TFTrainingArguments,
)
from transformers.utils import logging as hf_logging
hf_logging.set_verbosity_info()
hf_logging.enable_default_handler()
hf_logging.enable_explicit_format()
def get_tfds(
train_file: str,
eval_file: str,
test_file: str,
tokenizer: PreTrainedTokenizer,
label_column_id: int,
max_seq_length: Optional[int] = None,
):
files = {}
if train_file is not None:
files[datasets.Split.TRAIN] = [train_file]
if eval_file is not None:
files[datasets.Split.VALIDATION] = [eval_file]
if test_file is not None:
files[datasets.Split.TEST] = [test_file]
ds = datasets.load_dataset("csv", data_files=files)
features_name = list(ds[list(files.keys())[0]].features.keys())
label_name = features_name.pop(label_column_id)
label_list = list(set(ds[list(files.keys())[0]][label_name]))
label2id = {label: i for i, label in enumerate(label_list)}
input_names = tokenizer.model_input_names
transformed_ds = {}
if len(features_name) == 1:
for k in files.keys():
transformed_ds[k] = ds[k].map(
lambda example: tokenizer.batch_encode_plus(
example[features_name[0]], truncation=True, max_length=max_seq_length, padding="max_length"
),
batched=True,
)
elif len(features_name) == 2:
for k in files.keys():
transformed_ds[k] = ds[k].map(
lambda example: tokenizer.batch_encode_plus(
(example[features_name[0]], example[features_name[1]]),
truncation=True,
max_length=max_seq_length,
padding="max_length",
),
batched=True,
)
def gen_train():
for ex in transformed_ds[datasets.Split.TRAIN]:
d = {k: v for k, v in ex.items() if k in input_names}
label = label2id[ex[label_name]]
yield (d, label)
def gen_val():
for ex in transformed_ds[datasets.Split.VALIDATION]:
d = {k: v for k, v in ex.items() if k in input_names}
label = label2id[ex[label_name]]
yield (d, label)
def gen_test():
for ex in transformed_ds[datasets.Split.TEST]:
d = {k: v for k, v in ex.items() if k in input_names}
label = label2id[ex[label_name]]
yield (d, label)
train_ds = (
tf.data.Dataset.from_generator(
gen_train,
({k: tf.int32 for k in input_names}, tf.int64),
({k: tf.TensorShape([None]) for k in input_names}, tf.TensorShape([])),
)
if datasets.Split.TRAIN in transformed_ds
else None
)
if train_ds is not None:
train_ds = train_ds.apply(tf.data.experimental.assert_cardinality(len(ds[datasets.Split.TRAIN])))
val_ds = (
tf.data.Dataset.from_generator(
gen_val,
({k: tf.int32 for k in input_names}, tf.int64),
({k: tf.TensorShape([None]) for k in input_names}, tf.TensorShape([])),
)
if datasets.Split.VALIDATION in transformed_ds
else None
)
if val_ds is not None:
val_ds = val_ds.apply(tf.data.experimental.assert_cardinality(len(ds[datasets.Split.VALIDATION])))
test_ds = (
tf.data.Dataset.from_generator(
gen_test,
({k: tf.int32 for k in input_names}, tf.int64),
({k: tf.TensorShape([None]) for k in input_names}, tf.TensorShape([])),
)
if datasets.Split.TEST in transformed_ds
else None
)
if test_ds is not None:
test_ds = test_ds.apply(tf.data.experimental.assert_cardinality(len(ds[datasets.Split.TEST])))
return train_ds, val_ds, test_ds, label2id
logger = logging.getLogger(__name__)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
label_column_id: int = field(metadata={"help": "Which column contains the label"})
train_file: str = field(default=None, metadata={"help": "The path of the training file"})
dev_file: Optional[str] = field(default=None, metadata={"help": "The path of the development file"})
test_file: Optional[str] = field(default=None, metadata={"help": "The path of the test file"})
max_seq_length: int = field(
default=128,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_fast: bool = field(default=False, metadata={"help": "Set this flag to use fast tokenization."})
# If you want to tweak more attributes on your tokenizer, you should do it in a distinct script,
# or just modify its tokenizer_config.json.
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TFTrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use"
" --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
logger.info(
f"n_replicas: {training_args.n_replicas}, distributed training: {bool(training_args.n_replicas > 1)}, "
f"16-bits training: {training_args.fp16}"
)
logger.info(f"Training/evaluation parameters {training_args}")
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
train_dataset, eval_dataset, test_ds, label2id = get_tfds(
train_file=data_args.train_file,
eval_file=data_args.dev_file,
test_file=data_args.test_file,
tokenizer=tokenizer,
label_column_id=data_args.label_column_id,
max_seq_length=data_args.max_seq_length,
)
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=len(label2id),
label2id=label2id,
id2label={id: label for label, id in label2id.items()},
finetuning_task="text-classification",
cache_dir=model_args.cache_dir,
)
with training_args.strategy.scope():
model = TFAutoModelForSequenceClassification.from_pretrained(
model_args.model_name_or_path,
from_pt=bool(".bin" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
def compute_metrics(p: EvalPrediction) -> Dict:
preds = np.argmax(p.predictions, axis=1)
return {"acc": (preds == p.label_ids).mean()}
# Initialize our Trainer
trainer = TFTrainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
compute_metrics=compute_metrics,
)
# Training
if training_args.do_train:
trainer.train()
trainer.save_model()
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
result = trainer.evaluate()
output_eval_file = os.path.join(training_args.output_dir, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key, value in result.items():
logger.info(f" {key} = {value}")
writer.write(f"{key} = {value}\n")
results.update(result)
return results
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/text-classification/run_tf_text_classification.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-tuning the library models for named entity recognition on CoNLL-2003. """
import logging
import os
import sys
from dataclasses import dataclass, field
from importlib import import_module
from typing import Dict, List, Optional, Tuple
import numpy as np
from seqeval.metrics import accuracy_score, f1_score, precision_score, recall_score
from torch import nn
from utils_ner import Split, TokenClassificationDataset, TokenClassificationTask
import transformers
from transformers import (
AutoConfig,
AutoModelForTokenClassification,
AutoTokenizer,
DataCollatorWithPadding,
EvalPrediction,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.trainer_utils import is_main_process
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
task_type: Optional[str] = field(
default="NER", metadata={"help": "Task type to fine tune in training (e.g. NER, POS, etc)"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_fast: bool = field(default=False, metadata={"help": "Set this flag to use fast tokenization."})
# If you want to tweak more attributes on your tokenizer, you should do it in a distinct script,
# or just modify its tokenizer_config.json.
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
data_dir: str = field(
metadata={"help": "The input data dir. Should contain the .txt files for a CoNLL-2003-formatted task."}
)
labels: Optional[str] = field(
default=None,
metadata={"help": "Path to a file containing all labels. If not specified, CoNLL-2003 labels are used."},
)
max_seq_length: int = field(
default=128,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use"
" --overwrite_output_dir to overcome."
)
module = import_module("tasks")
try:
token_classification_task_clazz = getattr(module, model_args.task_type)
token_classification_task: TokenClassificationTask = token_classification_task_clazz()
except AttributeError:
raise ValueError(
f"Task {model_args.task_type} needs to be defined as a TokenClassificationTask subclass in {module}. "
f"Available tasks classes are: {TokenClassificationTask.__subclasses__()}"
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
training_args.local_rank,
training_args.device,
training_args.n_gpu,
bool(training_args.local_rank != -1),
training_args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed
set_seed(training_args.seed)
# Prepare CONLL-2003 task
labels = token_classification_task.get_labels(data_args.labels)
label_map: Dict[int, str] = dict(enumerate(labels))
num_labels = len(labels)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
id2label=label_map,
label2id={label: i for i, label in enumerate(labels)},
cache_dir=model_args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast,
)
model = AutoModelForTokenClassification.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
# Get datasets
train_dataset = (
TokenClassificationDataset(
token_classification_task=token_classification_task,
data_dir=data_args.data_dir,
tokenizer=tokenizer,
labels=labels,
model_type=config.model_type,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.train,
)
if training_args.do_train
else None
)
eval_dataset = (
TokenClassificationDataset(
token_classification_task=token_classification_task,
data_dir=data_args.data_dir,
tokenizer=tokenizer,
labels=labels,
model_type=config.model_type,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.dev,
)
if training_args.do_eval
else None
)
def align_predictions(predictions: np.ndarray, label_ids: np.ndarray) -> Tuple[List[int], List[int]]:
preds = np.argmax(predictions, axis=2)
batch_size, seq_len = preds.shape
out_label_list = [[] for _ in range(batch_size)]
preds_list = [[] for _ in range(batch_size)]
for i in range(batch_size):
for j in range(seq_len):
if label_ids[i, j] != nn.CrossEntropyLoss().ignore_index:
out_label_list[i].append(label_map[label_ids[i][j]])
preds_list[i].append(label_map[preds[i][j]])
return preds_list, out_label_list
def compute_metrics(p: EvalPrediction) -> Dict:
preds_list, out_label_list = align_predictions(p.predictions, p.label_ids)
return {
"accuracy_score": accuracy_score(out_label_list, preds_list),
"precision": precision_score(out_label_list, preds_list),
"recall": recall_score(out_label_list, preds_list),
"f1": f1_score(out_label_list, preds_list),
}
# Data collator
data_collator = DataCollatorWithPadding(tokenizer, pad_to_multiple_of=8) if training_args.fp16 else None
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
compute_metrics=compute_metrics,
data_collator=data_collator,
)
# Training
if training_args.do_train:
trainer.train(
model_path=model_args.model_name_or_path if os.path.isdir(model_args.model_name_or_path) else None
)
trainer.save_model()
# For convenience, we also re-save the tokenizer to the same directory,
# so that you can share your model easily on huggingface.co/models =)
if trainer.is_world_process_zero():
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
result = trainer.evaluate()
output_eval_file = os.path.join(training_args.output_dir, "eval_results.txt")
if trainer.is_world_process_zero():
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key, value in result.items():
logger.info(" %s = %s", key, value)
writer.write("%s = %s\n" % (key, value))
results.update(result)
# Predict
if training_args.do_predict:
test_dataset = TokenClassificationDataset(
token_classification_task=token_classification_task,
data_dir=data_args.data_dir,
tokenizer=tokenizer,
labels=labels,
model_type=config.model_type,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.test,
)
predictions, label_ids, metrics = trainer.predict(test_dataset)
preds_list, _ = align_predictions(predictions, label_ids)
output_test_results_file = os.path.join(training_args.output_dir, "test_results.txt")
if trainer.is_world_process_zero():
with open(output_test_results_file, "w") as writer:
for key, value in metrics.items():
logger.info(" %s = %s", key, value)
writer.write("%s = %s\n" % (key, value))
# Save predictions
output_test_predictions_file = os.path.join(training_args.output_dir, "test_predictions.txt")
if trainer.is_world_process_zero():
with open(output_test_predictions_file, "w") as writer:
with open(os.path.join(data_args.data_dir, "test.txt"), "r") as f:
token_classification_task.write_predictions_to_file(writer, f, preds_list)
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/token-classification/run_ner.py |
import logging
import os
from typing import List, TextIO, Union
from conllu import parse_incr
from utils_ner import InputExample, Split, TokenClassificationTask
logger = logging.getLogger(__name__)
class NER(TokenClassificationTask):
def __init__(self, label_idx=-1):
# in NER datasets, the last column is usually reserved for NER label
self.label_idx = label_idx
def read_examples_from_file(self, data_dir, mode: Union[Split, str]) -> List[InputExample]:
if isinstance(mode, Split):
mode = mode.value
file_path = os.path.join(data_dir, f"{mode}.txt")
guid_index = 1
examples = []
with open(file_path, encoding="utf-8") as f:
words = []
labels = []
for line in f:
if line.startswith("-DOCSTART-") or line == "" or line == "\n":
if words:
examples.append(InputExample(guid=f"{mode}-{guid_index}", words=words, labels=labels))
guid_index += 1
words = []
labels = []
else:
splits = line.split(" ")
words.append(splits[0])
if len(splits) > 1:
labels.append(splits[self.label_idx].replace("\n", ""))
else:
# Examples could have no label for mode = "test"
labels.append("O")
if words:
examples.append(InputExample(guid=f"{mode}-{guid_index}", words=words, labels=labels))
return examples
def write_predictions_to_file(self, writer: TextIO, test_input_reader: TextIO, preds_list: List):
example_id = 0
for line in test_input_reader:
if line.startswith("-DOCSTART-") or line == "" or line == "\n":
writer.write(line)
if not preds_list[example_id]:
example_id += 1
elif preds_list[example_id]:
output_line = line.split()[0] + " " + preds_list[example_id].pop(0) + "\n"
writer.write(output_line)
else:
logger.warning("Maximum sequence length exceeded: No prediction for '%s'.", line.split()[0])
def get_labels(self, path: str) -> List[str]:
if path:
with open(path, "r") as f:
labels = f.read().splitlines()
if "O" not in labels:
labels = ["O"] + labels
return labels
else:
return ["O", "B-MISC", "I-MISC", "B-PER", "I-PER", "B-ORG", "I-ORG", "B-LOC", "I-LOC"]
class Chunk(NER):
def __init__(self):
# in CONLL2003 dataset chunk column is second-to-last
super().__init__(label_idx=-2)
def get_labels(self, path: str) -> List[str]:
if path:
with open(path, "r") as f:
labels = f.read().splitlines()
if "O" not in labels:
labels = ["O"] + labels
return labels
else:
return [
"O",
"B-ADVP",
"B-INTJ",
"B-LST",
"B-PRT",
"B-NP",
"B-SBAR",
"B-VP",
"B-ADJP",
"B-CONJP",
"B-PP",
"I-ADVP",
"I-INTJ",
"I-LST",
"I-PRT",
"I-NP",
"I-SBAR",
"I-VP",
"I-ADJP",
"I-CONJP",
"I-PP",
]
class POS(TokenClassificationTask):
def read_examples_from_file(self, data_dir, mode: Union[Split, str]) -> List[InputExample]:
if isinstance(mode, Split):
mode = mode.value
file_path = os.path.join(data_dir, f"{mode}.txt")
guid_index = 1
examples = []
with open(file_path, encoding="utf-8") as f:
for sentence in parse_incr(f):
words = []
labels = []
for token in sentence:
words.append(token["form"])
labels.append(token["upos"])
assert len(words) == len(labels)
if words:
examples.append(InputExample(guid=f"{mode}-{guid_index}", words=words, labels=labels))
guid_index += 1
return examples
def write_predictions_to_file(self, writer: TextIO, test_input_reader: TextIO, preds_list: List):
example_id = 0
for sentence in parse_incr(test_input_reader):
s_p = preds_list[example_id]
out = ""
for token in sentence:
out += f'{token["form"]} ({token["upos"]}|{s_p.pop(0)}) '
out += "\n"
writer.write(out)
example_id += 1
def get_labels(self, path: str) -> List[str]:
if path:
with open(path, "r") as f:
return f.read().splitlines()
else:
return [
"ADJ",
"ADP",
"ADV",
"AUX",
"CCONJ",
"DET",
"INTJ",
"NOUN",
"NUM",
"PART",
"PRON",
"PROPN",
"PUNCT",
"SCONJ",
"SYM",
"VERB",
"X",
]
| transformers-main | examples/legacy/token-classification/tasks.py |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Named entity recognition fine-tuning: utilities to work with CoNLL-2003 task. """
import logging
import os
from dataclasses import dataclass
from enum import Enum
from typing import List, Optional, Union
from filelock import FileLock
from transformers import PreTrainedTokenizer, is_tf_available, is_torch_available
logger = logging.getLogger(__name__)
@dataclass
class InputExample:
"""
A single training/test example for token classification.
Args:
guid: Unique id for the example.
words: list. The words of the sequence.
labels: (Optional) list. The labels for each word of the sequence. This should be
specified for train and dev examples, but not for test examples.
"""
guid: str
words: List[str]
labels: Optional[List[str]]
@dataclass
class InputFeatures:
"""
A single set of features of data.
Property names are the same names as the corresponding inputs to a model.
"""
input_ids: List[int]
attention_mask: List[int]
token_type_ids: Optional[List[int]] = None
label_ids: Optional[List[int]] = None
class Split(Enum):
train = "train"
dev = "dev"
test = "test"
class TokenClassificationTask:
@staticmethod
def read_examples_from_file(data_dir, mode: Union[Split, str]) -> List[InputExample]:
raise NotImplementedError
@staticmethod
def get_labels(path: str) -> List[str]:
raise NotImplementedError
@staticmethod
def convert_examples_to_features(
examples: List[InputExample],
label_list: List[str],
max_seq_length: int,
tokenizer: PreTrainedTokenizer,
cls_token_at_end=False,
cls_token="[CLS]",
cls_token_segment_id=1,
sep_token="[SEP]",
sep_token_extra=False,
pad_on_left=False,
pad_token=0,
pad_token_segment_id=0,
pad_token_label_id=-100,
sequence_a_segment_id=0,
mask_padding_with_zero=True,
) -> List[InputFeatures]:
"""Loads a data file into a list of `InputFeatures`
`cls_token_at_end` define the location of the CLS token:
- False (Default, BERT/XLM pattern): [CLS] + A + [SEP] + B + [SEP]
- True (XLNet/GPT pattern): A + [SEP] + B + [SEP] + [CLS]
`cls_token_segment_id` define the segment id associated to the CLS token (0 for BERT, 2 for XLNet)
"""
# TODO clean up all this to leverage built-in features of tokenizers
label_map = {label: i for i, label in enumerate(label_list)}
features = []
for ex_index, example in enumerate(examples):
if ex_index % 10_000 == 0:
logger.info("Writing example %d of %d", ex_index, len(examples))
tokens = []
label_ids = []
for word, label in zip(example.words, example.labels):
word_tokens = tokenizer.tokenize(word)
# bert-base-multilingual-cased sometimes output "nothing ([]) when calling tokenize with just a space.
if len(word_tokens) > 0:
tokens.extend(word_tokens)
# Use the real label id for the first token of the word, and padding ids for the remaining tokens
label_ids.extend([label_map[label]] + [pad_token_label_id] * (len(word_tokens) - 1))
# Account for [CLS] and [SEP] with "- 2" and with "- 3" for RoBERTa.
special_tokens_count = tokenizer.num_special_tokens_to_add()
if len(tokens) > max_seq_length - special_tokens_count:
tokens = tokens[: (max_seq_length - special_tokens_count)]
label_ids = label_ids[: (max_seq_length - special_tokens_count)]
# The convention in BERT is:
# (a) For sequence pairs:
# tokens: [CLS] is this jack ##son ##ville ? [SEP] no it is not . [SEP]
# type_ids: 0 0 0 0 0 0 0 0 1 1 1 1 1 1
# (b) For single sequences:
# tokens: [CLS] the dog is hairy . [SEP]
# type_ids: 0 0 0 0 0 0 0
#
# Where "type_ids" are used to indicate whether this is the first
# sequence or the second sequence. The embedding vectors for `type=0` and
# `type=1` were learned during pre-training and are added to the wordpiece
# embedding vector (and position vector). This is not *strictly* necessary
# since the [SEP] token unambiguously separates the sequences, but it makes
# it easier for the model to learn the concept of sequences.
#
# For classification tasks, the first vector (corresponding to [CLS]) is
# used as the "sentence vector". Note that this only makes sense because
# the entire model is fine-tuned.
tokens += [sep_token]
label_ids += [pad_token_label_id]
if sep_token_extra:
# roberta uses an extra separator b/w pairs of sentences
tokens += [sep_token]
label_ids += [pad_token_label_id]
segment_ids = [sequence_a_segment_id] * len(tokens)
if cls_token_at_end:
tokens += [cls_token]
label_ids += [pad_token_label_id]
segment_ids += [cls_token_segment_id]
else:
tokens = [cls_token] + tokens
label_ids = [pad_token_label_id] + label_ids
segment_ids = [cls_token_segment_id] + segment_ids
input_ids = tokenizer.convert_tokens_to_ids(tokens)
# The mask has 1 for real tokens and 0 for padding tokens. Only real
# tokens are attended to.
input_mask = [1 if mask_padding_with_zero else 0] * len(input_ids)
# Zero-pad up to the sequence length.
padding_length = max_seq_length - len(input_ids)
if pad_on_left:
input_ids = ([pad_token] * padding_length) + input_ids
input_mask = ([0 if mask_padding_with_zero else 1] * padding_length) + input_mask
segment_ids = ([pad_token_segment_id] * padding_length) + segment_ids
label_ids = ([pad_token_label_id] * padding_length) + label_ids
else:
input_ids += [pad_token] * padding_length
input_mask += [0 if mask_padding_with_zero else 1] * padding_length
segment_ids += [pad_token_segment_id] * padding_length
label_ids += [pad_token_label_id] * padding_length
assert len(input_ids) == max_seq_length
assert len(input_mask) == max_seq_length
assert len(segment_ids) == max_seq_length
assert len(label_ids) == max_seq_length
if ex_index < 5:
logger.info("*** Example ***")
logger.info("guid: %s", example.guid)
logger.info("tokens: %s", " ".join([str(x) for x in tokens]))
logger.info("input_ids: %s", " ".join([str(x) for x in input_ids]))
logger.info("input_mask: %s", " ".join([str(x) for x in input_mask]))
logger.info("segment_ids: %s", " ".join([str(x) for x in segment_ids]))
logger.info("label_ids: %s", " ".join([str(x) for x in label_ids]))
if "token_type_ids" not in tokenizer.model_input_names:
segment_ids = None
features.append(
InputFeatures(
input_ids=input_ids, attention_mask=input_mask, token_type_ids=segment_ids, label_ids=label_ids
)
)
return features
if is_torch_available():
import torch
from torch import nn
from torch.utils.data import Dataset
class TokenClassificationDataset(Dataset):
"""
This will be superseded by a framework-agnostic approach
soon.
"""
features: List[InputFeatures]
pad_token_label_id: int = nn.CrossEntropyLoss().ignore_index
# Use cross entropy ignore_index as padding label id so that only
# real label ids contribute to the loss later.
def __init__(
self,
token_classification_task: TokenClassificationTask,
data_dir: str,
tokenizer: PreTrainedTokenizer,
labels: List[str],
model_type: str,
max_seq_length: Optional[int] = None,
overwrite_cache=False,
mode: Split = Split.train,
):
# Load data features from cache or dataset file
cached_features_file = os.path.join(
data_dir,
"cached_{}_{}_{}".format(mode.value, tokenizer.__class__.__name__, str(max_seq_length)),
)
# Make sure only the first process in distributed training processes the dataset,
# and the others will use the cache.
lock_path = cached_features_file + ".lock"
with FileLock(lock_path):
if os.path.exists(cached_features_file) and not overwrite_cache:
logger.info(f"Loading features from cached file {cached_features_file}")
self.features = torch.load(cached_features_file)
else:
logger.info(f"Creating features from dataset file at {data_dir}")
examples = token_classification_task.read_examples_from_file(data_dir, mode)
# TODO clean up all this to leverage built-in features of tokenizers
self.features = token_classification_task.convert_examples_to_features(
examples,
labels,
max_seq_length,
tokenizer,
cls_token_at_end=bool(model_type in ["xlnet"]),
# xlnet has a cls token at the end
cls_token=tokenizer.cls_token,
cls_token_segment_id=2 if model_type in ["xlnet"] else 0,
sep_token=tokenizer.sep_token,
sep_token_extra=False,
# roberta uses an extra separator b/w pairs of sentences, cf. github.com/pytorch/fairseq/commit/1684e166e3da03f5b600dbb7855cb98ddfcd0805
pad_on_left=bool(tokenizer.padding_side == "left"),
pad_token=tokenizer.pad_token_id,
pad_token_segment_id=tokenizer.pad_token_type_id,
pad_token_label_id=self.pad_token_label_id,
)
logger.info(f"Saving features into cached file {cached_features_file}")
torch.save(self.features, cached_features_file)
def __len__(self):
return len(self.features)
def __getitem__(self, i) -> InputFeatures:
return self.features[i]
if is_tf_available():
import tensorflow as tf
class TFTokenClassificationDataset:
"""
This will be superseded by a framework-agnostic approach
soon.
"""
features: List[InputFeatures]
pad_token_label_id: int = -100
# Use cross entropy ignore_index as padding label id so that only
# real label ids contribute to the loss later.
def __init__(
self,
token_classification_task: TokenClassificationTask,
data_dir: str,
tokenizer: PreTrainedTokenizer,
labels: List[str],
model_type: str,
max_seq_length: Optional[int] = None,
overwrite_cache=False,
mode: Split = Split.train,
):
examples = token_classification_task.read_examples_from_file(data_dir, mode)
# TODO clean up all this to leverage built-in features of tokenizers
self.features = token_classification_task.convert_examples_to_features(
examples,
labels,
max_seq_length,
tokenizer,
cls_token_at_end=bool(model_type in ["xlnet"]),
# xlnet has a cls token at the end
cls_token=tokenizer.cls_token,
cls_token_segment_id=2 if model_type in ["xlnet"] else 0,
sep_token=tokenizer.sep_token,
sep_token_extra=False,
# roberta uses an extra separator b/w pairs of sentences, cf. github.com/pytorch/fairseq/commit/1684e166e3da03f5b600dbb7855cb98ddfcd0805
pad_on_left=bool(tokenizer.padding_side == "left"),
pad_token=tokenizer.pad_token_id,
pad_token_segment_id=tokenizer.pad_token_type_id,
pad_token_label_id=self.pad_token_label_id,
)
def gen():
for ex in self.features:
if ex.token_type_ids is None:
yield (
{"input_ids": ex.input_ids, "attention_mask": ex.attention_mask},
ex.label_ids,
)
else:
yield (
{
"input_ids": ex.input_ids,
"attention_mask": ex.attention_mask,
"token_type_ids": ex.token_type_ids,
},
ex.label_ids,
)
if "token_type_ids" not in tokenizer.model_input_names:
self.dataset = tf.data.Dataset.from_generator(
gen,
({"input_ids": tf.int32, "attention_mask": tf.int32}, tf.int64),
(
{"input_ids": tf.TensorShape([None]), "attention_mask": tf.TensorShape([None])},
tf.TensorShape([None]),
),
)
else:
self.dataset = tf.data.Dataset.from_generator(
gen,
({"input_ids": tf.int32, "attention_mask": tf.int32, "token_type_ids": tf.int32}, tf.int64),
(
{
"input_ids": tf.TensorShape([None]),
"attention_mask": tf.TensorShape([None]),
"token_type_ids": tf.TensorShape([None]),
},
tf.TensorShape([None]),
),
)
def get_dataset(self):
self.dataset = self.dataset.apply(tf.data.experimental.assert_cardinality(len(self.features)))
return self.dataset
def __len__(self):
return len(self.features)
def __getitem__(self, i) -> InputFeatures:
return self.features[i]
| transformers-main | examples/legacy/token-classification/utils_ner.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-tuning the library models for named entity recognition."""
import logging
import os
from dataclasses import dataclass, field
from importlib import import_module
from typing import Dict, List, Optional, Tuple
import numpy as np
from seqeval.metrics import classification_report, f1_score, precision_score, recall_score
from utils_ner import Split, TFTokenClassificationDataset, TokenClassificationTask
from transformers import (
AutoConfig,
AutoTokenizer,
EvalPrediction,
HfArgumentParser,
TFAutoModelForTokenClassification,
TFTrainer,
TFTrainingArguments,
)
from transformers.utils import logging as hf_logging
hf_logging.set_verbosity_info()
hf_logging.enable_default_handler()
hf_logging.enable_explicit_format()
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
task_type: Optional[str] = field(
default="NER", metadata={"help": "Task type to fine tune in training (e.g. NER, POS, etc)"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_fast: bool = field(default=False, metadata={"help": "Set this flag to use fast tokenization."})
# If you want to tweak more attributes on your tokenizer, you should do it in a distinct script,
# or just modify its tokenizer_config.json.
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
data_dir: str = field(
metadata={"help": "The input data dir. Should contain the .txt files for a CoNLL-2003-formatted task."}
)
labels: Optional[str] = field(
metadata={"help": "Path to a file containing all labels. If not specified, CoNLL-2003 labels are used."}
)
max_seq_length: int = field(
default=128,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TFTrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. Use"
" --overwrite_output_dir to overcome."
)
module = import_module("tasks")
try:
token_classification_task_clazz = getattr(module, model_args.task_type)
token_classification_task: TokenClassificationTask = token_classification_task_clazz()
except AttributeError:
raise ValueError(
f"Task {model_args.task_type} needs to be defined as a TokenClassificationTask subclass in {module}. "
f"Available tasks classes are: {TokenClassificationTask.__subclasses__()}"
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
logger.info(
"n_replicas: %s, distributed training: %s, 16-bits training: %s",
training_args.n_replicas,
bool(training_args.n_replicas > 1),
training_args.fp16,
)
logger.info("Training/evaluation parameters %s", training_args)
# Prepare Token Classification task
labels = token_classification_task.get_labels(data_args.labels)
label_map: Dict[int, str] = dict(enumerate(labels))
num_labels = len(labels)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
id2label=label_map,
label2id={label: i for i, label in enumerate(labels)},
cache_dir=model_args.cache_dir,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast,
)
with training_args.strategy.scope():
model = TFAutoModelForTokenClassification.from_pretrained(
model_args.model_name_or_path,
from_pt=bool(".bin" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
)
# Get datasets
train_dataset = (
TFTokenClassificationDataset(
token_classification_task=token_classification_task,
data_dir=data_args.data_dir,
tokenizer=tokenizer,
labels=labels,
model_type=config.model_type,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.train,
)
if training_args.do_train
else None
)
eval_dataset = (
TFTokenClassificationDataset(
token_classification_task=token_classification_task,
data_dir=data_args.data_dir,
tokenizer=tokenizer,
labels=labels,
model_type=config.model_type,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.dev,
)
if training_args.do_eval
else None
)
def align_predictions(predictions: np.ndarray, label_ids: np.ndarray) -> Tuple[List[int], List[int]]:
preds = np.argmax(predictions, axis=2)
batch_size, seq_len = preds.shape
out_label_list = [[] for _ in range(batch_size)]
preds_list = [[] for _ in range(batch_size)]
for i in range(batch_size):
for j in range(seq_len):
if label_ids[i, j] != -100:
out_label_list[i].append(label_map[label_ids[i][j]])
preds_list[i].append(label_map[preds[i][j]])
return preds_list, out_label_list
def compute_metrics(p: EvalPrediction) -> Dict:
preds_list, out_label_list = align_predictions(p.predictions, p.label_ids)
return {
"precision": precision_score(out_label_list, preds_list),
"recall": recall_score(out_label_list, preds_list),
"f1": f1_score(out_label_list, preds_list),
}
# Initialize our Trainer
trainer = TFTrainer(
model=model,
args=training_args,
train_dataset=train_dataset.get_dataset() if train_dataset else None,
eval_dataset=eval_dataset.get_dataset() if eval_dataset else None,
compute_metrics=compute_metrics,
)
# Training
if training_args.do_train:
trainer.train()
trainer.save_model()
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
result = trainer.evaluate()
output_eval_file = os.path.join(training_args.output_dir, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key, value in result.items():
logger.info(" %s = %s", key, value)
writer.write("%s = %s\n" % (key, value))
results.update(result)
# Predict
if training_args.do_predict:
test_dataset = TFTokenClassificationDataset(
token_classification_task=token_classification_task,
data_dir=data_args.data_dir,
tokenizer=tokenizer,
labels=labels,
model_type=config.model_type,
max_seq_length=data_args.max_seq_length,
overwrite_cache=data_args.overwrite_cache,
mode=Split.test,
)
predictions, label_ids, metrics = trainer.predict(test_dataset.get_dataset())
preds_list, labels_list = align_predictions(predictions, label_ids)
report = classification_report(labels_list, preds_list)
logger.info("\n%s", report)
output_test_results_file = os.path.join(training_args.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
writer.write("%s\n" % report)
# Save predictions
output_test_predictions_file = os.path.join(training_args.output_dir, "test_predictions.txt")
with open(output_test_predictions_file, "w") as writer:
with open(os.path.join(data_args.data_dir, "test.txt"), "r") as f:
example_id = 0
for line in f:
if line.startswith("-DOCSTART-") or line == "" or line == "\n":
writer.write(line)
if not preds_list[example_id]:
example_id += 1
elif preds_list[example_id]:
output_line = line.split()[0] + " " + preds_list[example_id].pop(0) + "\n"
writer.write(output_line)
else:
logger.warning("Maximum sequence length exceeded: No prediction for '%s'.", line.split()[0])
return results
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/token-classification/run_tf_ner.py |
import sys
from transformers import AutoTokenizer
dataset = sys.argv[1]
model_name_or_path = sys.argv[2]
max_len = int(sys.argv[3])
subword_len_counter = 0
tokenizer = AutoTokenizer.from_pretrained(model_name_or_path)
max_len -= tokenizer.num_special_tokens_to_add()
with open(dataset, "rt") as f_p:
for line in f_p:
line = line.rstrip()
if not line:
print(line)
subword_len_counter = 0
continue
token = line.split()[0]
current_subwords_len = len(tokenizer.tokenize(token))
# Token contains strange control characters like \x96 or \x95
# Just filter out the complete line
if current_subwords_len == 0:
continue
if (subword_len_counter + current_subwords_len) > max_len:
print("")
print(line)
subword_len_counter = current_subwords_len
continue
subword_len_counter += current_subwords_len
print(line)
| transformers-main | examples/legacy/token-classification/scripts/preprocess.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
from seq2seq_trainer import Seq2SeqTrainer
from seq2seq_training_args import Seq2SeqTrainingArguments
import transformers
from transformers import (
AutoConfig,
AutoModelForSeq2SeqLM,
AutoTokenizer,
HfArgumentParser,
MBartTokenizer,
MBartTokenizerFast,
set_seed,
)
from transformers.trainer_utils import EvaluationStrategy, is_main_process
from transformers.training_args import ParallelMode
from utils import (
Seq2SeqDataCollator,
Seq2SeqDataset,
assert_all_frozen,
build_compute_metrics_fn,
check_output_dir,
freeze_embeds,
freeze_params,
lmap,
save_json,
use_task_specific_params,
write_txt_file,
)
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_encoder: bool = field(default=False, metadata={"help": "Whether tp freeze the encoder."})
freeze_embeds: bool = field(default=False, metadata={"help": "Whether to freeze the embeddings."})
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
data_dir: str = field(
metadata={"help": "The input data dir. Should contain the .tsv files (or other data files) for the task."}
)
task: Optional[str] = field(
default="summarization",
metadata={"help": "Task name, summarization (or summarization_{dataset} for pegasus) or translation"},
)
max_source_length: Optional[int] = field(
default=1024,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_target_length: Optional[int] = field(
default=128,
metadata={
"help": (
"The maximum total sequence length for target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
val_max_target_length: Optional[int] = field(
default=142,
metadata={
"help": (
"The maximum total sequence length for validation target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded. "
"This argument is also used to override the ``max_length`` param of ``model.generate``, which is used "
"during ``evaluate`` and ``predict``."
)
},
)
test_max_target_length: Optional[int] = field(
default=142,
metadata={
"help": (
"The maximum total sequence length for test target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
n_train: Optional[int] = field(default=-1, metadata={"help": "# training examples. -1 means use all."})
n_val: Optional[int] = field(default=-1, metadata={"help": "# validation examples. -1 means use all."})
n_test: Optional[int] = field(default=-1, metadata={"help": "# test examples. -1 means use all."})
src_lang: Optional[str] = field(default=None, metadata={"help": "Source language id for translation."})
tgt_lang: Optional[str] = field(default=None, metadata={"help": "Target language id for translation."})
eval_beams: Optional[int] = field(default=None, metadata={"help": "# num_beams to use for evaluation."})
ignore_pad_token_for_loss: bool = field(
default=True,
metadata={"help": "If only pad tokens should be ignored. This assumes that `config.pad_token_id` is defined."},
)
def handle_metrics(split, metrics, output_dir):
"""
Log and save metrics
Args:
- split: one of train, val, test
- metrics: metrics dict
- output_dir: where to save the metrics
"""
logger.info(f"***** {split} metrics *****")
for key in sorted(metrics.keys()):
logger.info(f" {key} = {metrics[key]}")
save_json(metrics, os.path.join(output_dir, f"{split}_results.json"))
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, Seq2SeqTrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
check_output_dir(training_args)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
training_args.local_rank,
training_args.device,
training_args.n_gpu,
bool(training_args.parallel_mode == ParallelMode.DISTRIBUTED),
training_args.fp16,
)
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed
set_seed(training_args.seed)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(training_args, p, None):
assert hasattr(config, p), f"({config.__class__.__name__}) doesn't have a `{p}` attribute"
setattr(config, p, getattr(training_args, p))
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
)
model = AutoModelForSeq2SeqLM.from_pretrained(
model_args.model_name_or_path,
from_tf=".ckpt" in model_args.model_name_or_path,
config=config,
cache_dir=model_args.cache_dir,
)
# use task specific params
use_task_specific_params(model, data_args.task)
# set num_beams for evaluation
if data_args.eval_beams is None:
data_args.eval_beams = model.config.num_beams
# set decoder_start_token_id for MBart
if model.config.decoder_start_token_id is None and isinstance(tokenizer, (MBartTokenizer, MBartTokenizerFast)):
assert (
data_args.tgt_lang is not None and data_args.src_lang is not None
), "mBart requires --tgt_lang and --src_lang"
if isinstance(tokenizer, MBartTokenizer):
model.config.decoder_start_token_id = tokenizer.lang_code_to_id[data_args.tgt_lang]
else:
model.config.decoder_start_token_id = tokenizer.convert_tokens_to_ids(data_args.tgt_lang)
if model_args.freeze_embeds:
freeze_embeds(model)
if model_args.freeze_encoder:
freeze_params(model.get_encoder())
assert_all_frozen(model.get_encoder())
dataset_class = Seq2SeqDataset
# Get datasets
train_dataset = (
dataset_class(
tokenizer,
type_path="train",
data_dir=data_args.data_dir,
n_obs=data_args.n_train,
max_target_length=data_args.max_target_length,
max_source_length=data_args.max_source_length,
prefix=model.config.prefix or "",
)
if training_args.do_train
else None
)
eval_dataset = (
dataset_class(
tokenizer,
type_path="val",
data_dir=data_args.data_dir,
n_obs=data_args.n_val,
max_target_length=data_args.val_max_target_length,
max_source_length=data_args.max_source_length,
prefix=model.config.prefix or "",
)
if training_args.do_eval or training_args.evaluation_strategy != EvaluationStrategy.NO
else None
)
test_dataset = (
dataset_class(
tokenizer,
type_path="test",
data_dir=data_args.data_dir,
n_obs=data_args.n_test,
max_target_length=data_args.test_max_target_length,
max_source_length=data_args.max_source_length,
prefix=model.config.prefix or "",
)
if training_args.do_predict
else None
)
# Initialize our Trainer
compute_metrics_fn = (
build_compute_metrics_fn(data_args.task, tokenizer) if training_args.predict_with_generate else None
)
trainer = Seq2SeqTrainer(
model=model,
args=training_args,
data_args=data_args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
data_collator=Seq2SeqDataCollator(
tokenizer, data_args, model.config.decoder_start_token_id, training_args.tpu_num_cores
),
compute_metrics=compute_metrics_fn,
tokenizer=tokenizer,
)
all_metrics = {}
# Training
if training_args.do_train:
logger.info("*** Train ***")
train_result = trainer.train(
model_path=model_args.model_name_or_path if os.path.isdir(model_args.model_name_or_path) else None
)
metrics = train_result.metrics
metrics["train_n_objs"] = data_args.n_train
trainer.save_model() # this also saves the tokenizer
if trainer.is_world_process_zero():
handle_metrics("train", metrics, training_args.output_dir)
all_metrics.update(metrics)
# Need to save the state, since Trainer.save_model saves only the tokenizer with the model
trainer.state.save_to_json(os.path.join(training_args.output_dir, "trainer_state.json"))
# For convenience, we also re-save the tokenizer to the same directory,
# so that you can share your model easily on huggingface.co/models =)
tokenizer.save_pretrained(training_args.output_dir)
# Evaluation
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate(metric_key_prefix="val")
metrics["val_n_objs"] = data_args.n_val
metrics["val_loss"] = round(metrics["val_loss"], 4)
if trainer.is_world_process_zero():
handle_metrics("val", metrics, training_args.output_dir)
all_metrics.update(metrics)
if training_args.do_predict:
logger.info("*** Predict ***")
test_output = trainer.predict(test_dataset=test_dataset, metric_key_prefix="test")
metrics = test_output.metrics
metrics["test_n_objs"] = data_args.n_test
if trainer.is_world_process_zero():
metrics["test_loss"] = round(metrics["test_loss"], 4)
handle_metrics("test", metrics, training_args.output_dir)
all_metrics.update(metrics)
if training_args.predict_with_generate:
test_preds = tokenizer.batch_decode(
test_output.predictions, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
test_preds = lmap(str.strip, test_preds)
write_txt_file(test_preds, os.path.join(training_args.output_dir, "test_generations.txt"))
if trainer.is_world_process_zero():
save_json(all_metrics, os.path.join(training_args.output_dir, "all_results.json"))
return all_metrics
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/seq2seq/finetune_trainer.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import datetime
import json
import time
import warnings
from logging import getLogger
from pathlib import Path
from typing import Dict, List
import torch
from tqdm import tqdm
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
from utils import calculate_bleu, calculate_rouge, chunks, parse_numeric_n_bool_cl_kwargs, use_task_specific_params
logger = getLogger(__name__)
DEFAULT_DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
def generate_summaries_or_translations(
examples: List[str],
out_file: str,
model_name: str,
batch_size: int = 8,
device: str = DEFAULT_DEVICE,
fp16=False,
task="summarization",
prefix=None,
**generate_kwargs,
) -> Dict:
"""Save model.generate results to <out_file>, and return how long it took."""
fout = Path(out_file).open("w", encoding="utf-8")
model_name = str(model_name)
model = AutoModelForSeq2SeqLM.from_pretrained(model_name).to(device)
if fp16:
model = model.half()
tokenizer = AutoTokenizer.from_pretrained(model_name)
logger.info(f"Inferred tokenizer type: {tokenizer.__class__}") # if this is wrong, check config.model_type.
start_time = time.time()
# update config with task specific params
use_task_specific_params(model, task)
if prefix is None:
prefix = prefix or getattr(model.config, "prefix", "") or ""
for examples_chunk in tqdm(list(chunks(examples, batch_size))):
examples_chunk = [prefix + text for text in examples_chunk]
batch = tokenizer(examples_chunk, return_tensors="pt", truncation=True, padding="longest").to(device)
summaries = model.generate(
input_ids=batch.input_ids,
attention_mask=batch.attention_mask,
**generate_kwargs,
)
dec = tokenizer.batch_decode(summaries, skip_special_tokens=True, clean_up_tokenization_spaces=False)
for hypothesis in dec:
fout.write(hypothesis + "\n")
fout.flush()
fout.close()
runtime = int(time.time() - start_time) # seconds
n_obs = len(examples)
return {"n_obs": n_obs, "runtime": runtime, "seconds_per_sample": round(runtime / n_obs, 4)}
def datetime_now():
return datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
def run_generate(verbose=True):
"""
Takes input text, generates output, and then using reference calculates the BLEU scores.
The results are saved to a file and returned to the caller, and printed out unless ``verbose=False`` is passed.
Args:
verbose (:obj:`bool`, `optional`, defaults to :obj:`True`): print results to stdout
Returns:
a tuple: ``(scores, params}``
- ``scores``: a dict of scores data ``{'bleu': 39.6501, 'n_obs': 2000, 'runtime': 186, 'seconds_per_sample': 0.093}``
- ``params``: a dict of custom params, e.g. ``{'num_beams': 5, 'length_penalty': 0.8}``
"""
parser = argparse.ArgumentParser()
parser.add_argument("model_name", type=str, help="like facebook/bart-large-cnn,t5-base, etc.")
parser.add_argument("input_path", type=str, help="like cnn_dm/test.source")
parser.add_argument("save_path", type=str, help="where to save summaries")
parser.add_argument("--reference_path", type=str, required=False, help="like cnn_dm/test.target")
parser.add_argument("--score_path", type=str, required=False, default="metrics.json", help="where to save metrics")
parser.add_argument("--device", type=str, required=False, default=DEFAULT_DEVICE, help="cuda, cuda:1, cpu etc.")
parser.add_argument(
"--prefix", type=str, required=False, default=None, help="will be added to the begininng of src examples"
)
parser.add_argument("--task", type=str, default="summarization", help="used for task_specific_params + metrics")
parser.add_argument("--bs", type=int, default=8, required=False, help="batch size")
parser.add_argument(
"--n_obs", type=int, default=-1, required=False, help="How many observations. Defaults to all."
)
parser.add_argument("--fp16", action="store_true")
parser.add_argument("--dump-args", action="store_true", help="print the custom hparams with the results")
parser.add_argument(
"--info",
nargs="?",
type=str,
const=datetime_now(),
help=(
"use in conjunction w/ --dump-args to print with the results whatever other info you'd like, e.g."
" lang=en-ru. If no value is passed, the current datetime string will be used."
),
)
# Unspecified args like --num_beams=2 --decoder_start_token_id=4 are passed to model.generate
args, rest = parser.parse_known_args()
parsed_args = parse_numeric_n_bool_cl_kwargs(rest)
if parsed_args and verbose:
print(f"parsed the following generate kwargs: {parsed_args}")
examples = [" " + x.rstrip() if "t5" in args.model_name else x.rstrip() for x in open(args.input_path).readlines()]
if args.n_obs > 0:
examples = examples[: args.n_obs]
Path(args.save_path).parent.mkdir(exist_ok=True)
if args.reference_path is None and Path(args.score_path).exists():
warnings.warn(f"score_path {args.score_path} will be overwritten unless you type ctrl-c.")
if args.device == "cpu" and args.fp16:
# this mix leads to RuntimeError: "threshold_cpu" not implemented for 'Half'
raise ValueError("Can't mix --fp16 and --device cpu")
runtime_metrics = generate_summaries_or_translations(
examples,
args.save_path,
args.model_name,
batch_size=args.bs,
device=args.device,
fp16=args.fp16,
task=args.task,
prefix=args.prefix,
**parsed_args,
)
if args.reference_path is None:
return {}
# Compute scores
score_fn = calculate_bleu if "translation" in args.task else calculate_rouge
output_lns = [x.rstrip() for x in open(args.save_path).readlines()]
reference_lns = [x.rstrip() for x in open(args.reference_path).readlines()][: len(output_lns)]
scores: dict = score_fn(output_lns, reference_lns)
scores.update(runtime_metrics)
if args.dump_args:
scores.update(parsed_args)
if args.info:
scores["info"] = args.info
if verbose:
print(scores)
if args.score_path is not None:
json.dump(scores, open(args.score_path, "w"))
return scores
if __name__ == "__main__":
# Usage for MT:
# python run_eval.py MODEL_NAME $DATA_DIR/test.source $save_dir/test_translations.txt --reference_path $DATA_DIR/test.target --score_path $save_dir/test_bleu.json --task translation $@
run_generate(verbose=True)
| transformers-main | examples/legacy/seq2seq/run_eval.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from collections import defaultdict
from pathlib import Path
import pandas as pd
from rouge_cli import calculate_rouge_path
from utils import calculate_rouge
PRED = [
'Prosecutor: "No videos were used in the crash investigation" German papers say they saw a cell phone video of the'
' final seconds on board Flight 9525. The Germanwings co-pilot says he had a "previous episode of severe'
" depression\" German airline confirms it knew of Andreas Lubitz's depression years before he took control.",
"The Palestinian Authority officially becomes the 123rd member of the International Criminal Court. The formal"
" accession was marked with a ceremony at The Hague, in the Netherlands. The Palestinians signed the ICC's"
" founding Rome Statute in January. Israel and the United States opposed the Palestinians' efforts to join the"
" body.",
"Amnesty International releases its annual report on the death penalty. The report catalogs the use of"
" state-sanctioned killing as a punitive measure across the globe. At least 607 people were executed around the"
" world in 2014, compared to 778 in 2013. The U.S. remains one of the worst offenders for imposing capital"
" punishment.",
]
TGT = [
'Marseille prosecutor says "so far no videos were used in the crash investigation" despite media reports .'
' Journalists at Bild and Paris Match are "very confident" the video clip is real, an editor says . Andreas Lubitz'
" had informed his Lufthansa training school of an episode of severe depression, airline says .",
"Membership gives the ICC jurisdiction over alleged crimes committed in Palestinian territories since last June ."
" Israel and the United States opposed the move, which could open the door to war crimes investigations against"
" Israelis .",
"Amnesty's annual death penalty report catalogs encouraging signs, but setbacks in numbers of those sentenced to"
" death . Organization claims that governments around the world are using the threat of terrorism to advance"
" executions . The number of executions worldwide has gone down by almost 22% compared with 2013, but death"
" sentences up by 28% .",
]
def test_disaggregated_scores_are_determinstic():
no_aggregation = calculate_rouge(PRED, TGT, bootstrap_aggregation=False, rouge_keys=["rouge2", "rougeL"])
assert isinstance(no_aggregation, defaultdict)
no_aggregation_just_r2 = calculate_rouge(PRED, TGT, bootstrap_aggregation=False, rouge_keys=["rouge2"])
assert (
pd.DataFrame(no_aggregation["rouge2"]).fmeasure.mean()
== pd.DataFrame(no_aggregation_just_r2["rouge2"]).fmeasure.mean()
)
def test_newline_cnn_improvement():
k = "rougeLsum"
score = calculate_rouge(PRED, TGT, newline_sep=True, rouge_keys=[k])[k]
score_no_sep = calculate_rouge(PRED, TGT, newline_sep=False, rouge_keys=[k])[k]
assert score > score_no_sep
def test_newline_irrelevant_for_other_metrics():
k = ["rouge1", "rouge2", "rougeL"]
score_sep = calculate_rouge(PRED, TGT, newline_sep=True, rouge_keys=k)
score_no_sep = calculate_rouge(PRED, TGT, newline_sep=False, rouge_keys=k)
assert score_sep == score_no_sep
def test_single_sent_scores_dont_depend_on_newline_sep():
pred = [
"Her older sister, Margot Frank, died in 1945, a month earlier than previously thought.",
'Marseille prosecutor says "so far no videos were used in the crash investigation" despite media reports .',
]
tgt = [
"Margot Frank, died in 1945, a month earlier than previously thought.",
'Prosecutor: "No videos were used in the crash investigation" German papers say they saw a cell phone video of'
" the final seconds on board Flight 9525.",
]
assert calculate_rouge(pred, tgt, newline_sep=True) == calculate_rouge(pred, tgt, newline_sep=False)
def test_pegasus_newline():
pred = [
"""" "a person who has such a video needs to immediately give it to the investigators," prosecutor says .<n> "it is a very disturbing scene," editor-in-chief of bild online tells "erin burnett: outfront" """
]
tgt = [
""" Marseille prosecutor says "so far no videos were used in the crash investigation" despite media reports . Journalists at Bild and Paris Match are "very confident" the video clip is real, an editor says . Andreas Lubitz had informed his Lufthansa training school of an episode of severe depression, airline says ."""
]
prev_score = calculate_rouge(pred, tgt, rouge_keys=["rougeLsum"], newline_sep=False)["rougeLsum"]
new_score = calculate_rouge(pred, tgt, rouge_keys=["rougeLsum"])["rougeLsum"]
assert new_score > prev_score
def test_rouge_cli():
data_dir = Path("examples/seq2seq/test_data/wmt_en_ro")
metrics = calculate_rouge_path(data_dir.joinpath("test.source"), data_dir.joinpath("test.target"))
assert isinstance(metrics, dict)
metrics_default_dict = calculate_rouge_path(
data_dir.joinpath("test.source"), data_dir.joinpath("test.target"), bootstrap_aggregation=False
)
assert isinstance(metrics_default_dict, defaultdict)
| transformers-main | examples/legacy/seq2seq/old_test_calculate_rouge.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import re
from filelock import FileLock
try:
import nltk
NLTK_AVAILABLE = True
except (ImportError, ModuleNotFoundError):
NLTK_AVAILABLE = False
if NLTK_AVAILABLE:
with FileLock(".lock") as lock:
nltk.download("punkt", quiet=True)
def add_newline_to_end_of_each_sentence(x: str) -> str:
"""This was added to get rougeLsum scores matching published rougeL scores for BART and PEGASUS."""
re.sub("<n>", "", x) # remove pegasus newline char
assert NLTK_AVAILABLE, "nltk must be installed to separate newlines between sentences. (pip install nltk)"
return "\n".join(nltk.sent_tokenize(x))
| transformers-main | examples/legacy/seq2seq/sentence_splitter.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
from dataclasses import dataclass, field
from typing import Optional
from seq2seq_trainer import arg_to_scheduler
from transformers import TrainingArguments
logger = logging.getLogger(__name__)
@dataclass
class Seq2SeqTrainingArguments(TrainingArguments):
"""
Parameters:
label_smoothing (:obj:`float`, `optional`, defaults to 0):
The label smoothing epsilon to apply (if not zero).
sortish_sampler (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether to SortishSamler or not. It sorts the inputs according to lenghts in-order to minimizing the padding size.
predict_with_generate (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether to use generate to calculate generative metrics (ROUGE, BLEU).
"""
label_smoothing: Optional[float] = field(
default=0.0, metadata={"help": "The label smoothing epsilon to apply (if not zero)."}
)
sortish_sampler: bool = field(default=False, metadata={"help": "Whether to SortishSamler or not."})
predict_with_generate: bool = field(
default=False, metadata={"help": "Whether to use generate to calculate generative metrics (ROUGE, BLEU)."}
)
adafactor: bool = field(default=False, metadata={"help": "whether to use adafactor"})
encoder_layerdrop: Optional[float] = field(
default=None, metadata={"help": "Encoder layer dropout probability. Goes into model.config."}
)
decoder_layerdrop: Optional[float] = field(
default=None, metadata={"help": "Decoder layer dropout probability. Goes into model.config."}
)
dropout: Optional[float] = field(default=None, metadata={"help": "Dropout probability. Goes into model.config."})
attention_dropout: Optional[float] = field(
default=None, metadata={"help": "Attention dropout probability. Goes into model.config."}
)
lr_scheduler: Optional[str] = field(
default="linear",
metadata={"help": f"Which lr scheduler to use. Selected in {sorted(arg_to_scheduler.keys())}"},
)
| transformers-main | examples/legacy/seq2seq/seq2seq_training_args.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import tempfile
import unittest
from transformers.models.marian.convert_marian_tatoeba_to_pytorch import DEFAULT_REPO, TatoebaConverter
from transformers.testing_utils import slow
from transformers.utils import cached_property
@unittest.skipUnless(os.path.exists(DEFAULT_REPO), "Tatoeba directory does not exist.")
class TatoebaConversionTester(unittest.TestCase):
@cached_property
def resolver(self):
tmp_dir = tempfile.mkdtemp()
return TatoebaConverter(save_dir=tmp_dir)
@slow
def test_resolver(self):
self.resolver.convert_models(["heb-eng"])
@slow
def test_model_card(self):
content, mmeta = self.resolver.write_model_card("opus-mt-he-en", dry_run=True)
assert mmeta["long_pair"] == "heb-eng"
| transformers-main | examples/legacy/seq2seq/old_test_tatoeba_conversion.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
from pathlib import Path
import numpy as np
import pytest
from pack_dataset import pack_data_dir
from parameterized import parameterized
from save_len_file import save_len_file
from torch.utils.data import DataLoader
from transformers import AutoTokenizer
from transformers.models.mbart.modeling_mbart import shift_tokens_right
from transformers.testing_utils import TestCasePlus, slow
from utils import FAIRSEQ_AVAILABLE, DistributedSortishSampler, LegacySeq2SeqDataset, Seq2SeqDataset
BERT_BASE_CASED = "bert-base-cased"
PEGASUS_XSUM = "google/pegasus-xsum"
ARTICLES = [" Sam ate lunch today.", "Sams lunch ingredients."]
SUMMARIES = ["A very interesting story about what I ate for lunch.", "Avocado, celery, turkey, coffee"]
T5_TINY = "patrickvonplaten/t5-tiny-random"
BART_TINY = "sshleifer/bart-tiny-random"
MBART_TINY = "sshleifer/tiny-mbart"
MARIAN_TINY = "sshleifer/tiny-marian-en-de"
def _dump_articles(path: Path, articles: list):
content = "\n".join(articles)
Path(path).open("w").writelines(content)
def make_test_data_dir(tmp_dir):
for split in ["train", "val", "test"]:
_dump_articles(os.path.join(tmp_dir, f"{split}.source"), ARTICLES)
_dump_articles(os.path.join(tmp_dir, f"{split}.target"), SUMMARIES)
return tmp_dir
class TestAll(TestCasePlus):
@parameterized.expand(
[
MBART_TINY,
MARIAN_TINY,
T5_TINY,
BART_TINY,
PEGASUS_XSUM,
],
)
@slow
def test_seq2seq_dataset_truncation(self, tok_name):
tokenizer = AutoTokenizer.from_pretrained(tok_name)
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
max_len_source = max(len(tokenizer.encode(a)) for a in ARTICLES)
max_len_target = max(len(tokenizer.encode(a)) for a in SUMMARIES)
max_src_len = 4
max_tgt_len = 8
assert max_len_target > max_src_len # Will be truncated
assert max_len_source > max_src_len # Will be truncated
src_lang, tgt_lang = "ro_RO", "de_DE" # ignored for all but mbart, but never causes error.
train_dataset = Seq2SeqDataset(
tokenizer,
data_dir=tmp_dir,
type_path="train",
max_source_length=max_src_len,
max_target_length=max_tgt_len, # ignored
src_lang=src_lang,
tgt_lang=tgt_lang,
)
dataloader = DataLoader(train_dataset, batch_size=2, collate_fn=train_dataset.collate_fn)
for batch in dataloader:
assert isinstance(batch, dict)
assert batch["attention_mask"].shape == batch["input_ids"].shape
# show that articles were trimmed.
assert batch["input_ids"].shape[1] == max_src_len
# show that targets are the same len
assert batch["labels"].shape[1] == max_tgt_len
if tok_name != MBART_TINY:
continue
# check language codes in correct place
batch["decoder_input_ids"] = shift_tokens_right(batch["labels"], tokenizer.pad_token_id)
assert batch["decoder_input_ids"][0, 0].item() == tokenizer.lang_code_to_id[tgt_lang]
assert batch["decoder_input_ids"][0, -1].item() == tokenizer.eos_token_id
assert batch["input_ids"][0, -2].item() == tokenizer.eos_token_id
assert batch["input_ids"][0, -1].item() == tokenizer.lang_code_to_id[src_lang]
break # No need to test every batch
@parameterized.expand([BART_TINY, BERT_BASE_CASED])
def test_legacy_dataset_truncation(self, tok):
tokenizer = AutoTokenizer.from_pretrained(tok)
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
max_len_source = max(len(tokenizer.encode(a)) for a in ARTICLES)
max_len_target = max(len(tokenizer.encode(a)) for a in SUMMARIES)
trunc_target = 4
train_dataset = LegacySeq2SeqDataset(
tokenizer,
data_dir=tmp_dir,
type_path="train",
max_source_length=20,
max_target_length=trunc_target,
)
dataloader = DataLoader(train_dataset, batch_size=2, collate_fn=train_dataset.collate_fn)
for batch in dataloader:
assert batch["attention_mask"].shape == batch["input_ids"].shape
# show that articles were trimmed.
assert batch["input_ids"].shape[1] == max_len_source
assert 20 >= batch["input_ids"].shape[1] # trimmed significantly
# show that targets were truncated
assert batch["labels"].shape[1] == trunc_target # Truncated
assert max_len_target > trunc_target # Truncated
break # No need to test every batch
def test_pack_dataset(self):
tokenizer = AutoTokenizer.from_pretrained("facebook/mbart-large-cc25")
tmp_dir = Path(make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir()))
orig_examples = tmp_dir.joinpath("train.source").open().readlines()
save_dir = Path(make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir()))
pack_data_dir(tokenizer, tmp_dir, 128, save_dir)
orig_paths = {x.name for x in tmp_dir.iterdir()}
new_paths = {x.name for x in save_dir.iterdir()}
packed_examples = save_dir.joinpath("train.source").open().readlines()
# orig: [' Sam ate lunch today.\n', 'Sams lunch ingredients.']
# desired_packed: [' Sam ate lunch today.\n Sams lunch ingredients.']
assert len(packed_examples) < len(orig_examples)
assert len(packed_examples) == 1
assert len(packed_examples[0]) == sum(len(x) for x in orig_examples)
assert orig_paths == new_paths
@pytest.mark.skipif(not FAIRSEQ_AVAILABLE, reason="This test requires fairseq")
def test_dynamic_batch_size(self):
if not FAIRSEQ_AVAILABLE:
return
ds, max_tokens, tokenizer = self._get_dataset(max_len=64)
required_batch_size_multiple = 64
batch_sampler = ds.make_dynamic_sampler(max_tokens, required_batch_size_multiple=required_batch_size_multiple)
batch_sizes = [len(x) for x in batch_sampler]
assert len(set(batch_sizes)) > 1 # it's not dynamic batch size if every batch is the same length
assert sum(batch_sizes) == len(ds) # no dropped or added examples
data_loader = DataLoader(ds, batch_sampler=batch_sampler, collate_fn=ds.collate_fn, num_workers=2)
failures = []
num_src_per_batch = []
for batch in data_loader:
src_shape = batch["input_ids"].shape
bs = src_shape[0]
assert bs % required_batch_size_multiple == 0 or bs < required_batch_size_multiple
num_src_tokens = np.product(batch["input_ids"].shape)
num_src_per_batch.append(num_src_tokens)
if num_src_tokens > (max_tokens * 1.1):
failures.append(num_src_tokens)
assert num_src_per_batch[0] == max(num_src_per_batch)
if failures:
raise AssertionError(f"too many tokens in {len(failures)} batches")
def test_sortish_sampler_reduces_padding(self):
ds, _, tokenizer = self._get_dataset(max_len=512)
bs = 2
sortish_sampler = ds.make_sortish_sampler(bs, shuffle=False)
naive_dl = DataLoader(ds, batch_size=bs, collate_fn=ds.collate_fn, num_workers=2)
sortish_dl = DataLoader(ds, batch_size=bs, collate_fn=ds.collate_fn, num_workers=2, sampler=sortish_sampler)
pad = tokenizer.pad_token_id
def count_pad_tokens(data_loader, k="input_ids"):
return [batch[k].eq(pad).sum().item() for batch in data_loader]
assert sum(count_pad_tokens(sortish_dl, k="labels")) < sum(count_pad_tokens(naive_dl, k="labels"))
assert sum(count_pad_tokens(sortish_dl)) < sum(count_pad_tokens(naive_dl))
assert len(sortish_dl) == len(naive_dl)
def _get_dataset(self, n_obs=1000, max_len=128):
if os.getenv("USE_REAL_DATA", False):
data_dir = "examples/seq2seq/wmt_en_ro"
max_tokens = max_len * 2 * 64
if not Path(data_dir).joinpath("train.len").exists():
save_len_file(MARIAN_TINY, data_dir)
else:
data_dir = "examples/seq2seq/test_data/wmt_en_ro"
max_tokens = max_len * 4
save_len_file(MARIAN_TINY, data_dir)
tokenizer = AutoTokenizer.from_pretrained(MARIAN_TINY)
ds = Seq2SeqDataset(
tokenizer,
data_dir=data_dir,
type_path="train",
max_source_length=max_len,
max_target_length=max_len,
n_obs=n_obs,
)
return ds, max_tokens, tokenizer
def test_distributed_sortish_sampler_splits_indices_between_procs(self):
ds, max_tokens, tokenizer = self._get_dataset()
ids1 = set(DistributedSortishSampler(ds, 256, num_replicas=2, rank=0, add_extra_examples=False))
ids2 = set(DistributedSortishSampler(ds, 256, num_replicas=2, rank=1, add_extra_examples=False))
assert ids1.intersection(ids2) == set()
@parameterized.expand(
[
MBART_TINY,
MARIAN_TINY,
T5_TINY,
BART_TINY,
PEGASUS_XSUM,
],
)
def test_dataset_kwargs(self, tok_name):
tokenizer = AutoTokenizer.from_pretrained(tok_name, use_fast=False)
if tok_name == MBART_TINY:
train_dataset = Seq2SeqDataset(
tokenizer,
data_dir=make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir()),
type_path="train",
max_source_length=4,
max_target_length=8,
src_lang="EN",
tgt_lang="FR",
)
kwargs = train_dataset.dataset_kwargs
assert "src_lang" in kwargs and "tgt_lang" in kwargs
else:
train_dataset = Seq2SeqDataset(
tokenizer,
data_dir=make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir()),
type_path="train",
max_source_length=4,
max_target_length=8,
)
kwargs = train_dataset.dataset_kwargs
assert "add_prefix_space" not in kwargs if tok_name != BART_TINY else "add_prefix_space" in kwargs
assert len(kwargs) == 1 if tok_name == BART_TINY else len(kwargs) == 0
| transformers-main | examples/legacy/seq2seq/old_test_datasets.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import shutil
import time
from json import JSONDecodeError
from logging import getLogger
from pathlib import Path
from typing import Dict, List
import torch
from torch.utils.data import DataLoader
from tqdm import tqdm
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
from utils import (
Seq2SeqDataset,
calculate_bleu,
calculate_rouge,
chunks,
lmap,
load_json,
parse_numeric_n_bool_cl_kwargs,
save_json,
use_task_specific_params,
write_txt_file,
)
logger = getLogger(__name__)
def eval_data_dir(
data_dir,
save_dir: str,
model_name: str,
bs: int = 8,
max_source_length: int = 1024,
type_path="val",
n_obs=None,
fp16=False,
task="summarization",
local_rank=None,
num_return_sequences=1,
dataset_kwargs: Dict = None,
prefix="",
**generate_kwargs,
) -> Dict:
"""Run evaluation on part of the data for one gpu and save to {save_dir}/rank_{rank}_output.json"""
model_name = str(model_name)
assert local_rank is not None
torch.distributed.init_process_group(backend="nccl", rank=local_rank)
save_dir = Path(save_dir)
save_path = save_dir.joinpath(f"rank_{local_rank}_output.json")
torch.cuda.set_device(local_rank)
model = AutoModelForSeq2SeqLM.from_pretrained(model_name).cuda()
if fp16:
model = model.half()
# determine if we need to increase num_beams
use_task_specific_params(model, task) # update config with task specific params
num_beams = generate_kwargs.pop("num_beams", model.config.num_beams) # AttributeError risk?
if num_return_sequences > num_beams:
num_beams = num_return_sequences
tokenizer = AutoTokenizer.from_pretrained(model_name)
logger.info(f"Inferred tokenizer type: {tokenizer.__class__}") # if this is wrong, check config.model_type.
if max_source_length is None:
max_source_length = tokenizer.model_max_length
if prefix is None:
prefix = prefix or getattr(model.config, "prefix", "") or ""
ds = Seq2SeqDataset(
tokenizer,
data_dir,
max_source_length,
max_target_length=1024,
type_path=type_path,
n_obs=n_obs,
prefix=prefix,
**dataset_kwargs,
)
# I set shuffle=True for a more accurate progress bar.
# If all the longest samples are first, the prog bar estimate is too high at the beginning.
sampler = ds.make_sortish_sampler(bs, distributed=True, add_extra_examples=False, shuffle=True)
data_loader = DataLoader(ds, sampler=sampler, batch_size=bs, collate_fn=ds.collate_fn)
results = []
for batch in tqdm(data_loader):
summaries = model.generate(
input_ids=batch["input_ids"].to(model.device),
attention_mask=batch["attention_mask"].to(model.device),
num_return_sequences=num_return_sequences,
num_beams=num_beams,
**generate_kwargs,
)
preds = tokenizer.batch_decode(summaries, skip_special_tokens=True, clean_up_tokenization_spaces=False)
ids = batch["ids"]
if num_return_sequences > 1:
preds = chunks(preds, num_return_sequences) # batch size chunks, each of size num_return_seq
for i, pred in enumerate(preds):
results.append({"pred": pred, "id": ids[i].item()})
save_json(results, save_path)
return results, sampler.num_replicas
def run_generate():
parser = argparse.ArgumentParser(
epilog="Unspecified args like --num_beams=2 --decoder_start_token_id=4 are passed to model.generate"
)
parser.add_argument("--data_dir", type=str, help="like cnn_dm/test.source")
parser.add_argument(
"--model_name",
type=str,
help="like facebook/bart-large-cnn,t5-base, etc.",
default="sshleifer/distilbart-xsum-12-3",
)
parser.add_argument("--save_dir", type=str, help="where to save", default="tmp_gen")
parser.add_argument("--max_source_length", type=int, default=None)
parser.add_argument(
"--type_path", type=str, default="test", help="which subset to evaluate typically train/val/test"
)
parser.add_argument("--task", type=str, default="summarization", help="used for task_specific_params + metrics")
parser.add_argument("--bs", type=int, default=8, required=False, help="batch size")
parser.add_argument(
"--local_rank", type=int, default=-1, required=False, help="should be passed by distributed.launch"
)
parser.add_argument(
"--n_obs", type=int, default=None, required=False, help="How many observations. Defaults to all."
)
parser.add_argument(
"--num_return_sequences", type=int, default=1, required=False, help="How many sequences to return"
)
parser.add_argument(
"--sync_timeout",
type=int,
default=600,
required=False,
help="How long should master process wait for other processes to finish.",
)
parser.add_argument("--src_lang", type=str, default=None, required=False)
parser.add_argument("--tgt_lang", type=str, default=None, required=False)
parser.add_argument(
"--prefix", type=str, required=False, default=None, help="will be added to the begininng of src examples"
)
parser.add_argument("--fp16", action="store_true")
parser.add_argument("--debug", action="store_true")
start_time = time.time()
args, rest = parser.parse_known_args()
generate_kwargs = parse_numeric_n_bool_cl_kwargs(rest)
if generate_kwargs and args.local_rank <= 0:
print(f"parsed the following generate kwargs: {generate_kwargs}")
json_save_dir = Path(args.save_dir + "_tmp")
Path(json_save_dir).mkdir(exist_ok=True) # this handles locking.
intermediate_files = list(json_save_dir.glob("rank_*.json"))
if intermediate_files:
raise ValueError(f"Found files at {json_save_dir} please move or remove them.")
# In theory, a node could finish and save before another node hits this. If this happens, we can address later.
dataset_kwargs = {}
if args.src_lang is not None:
dataset_kwargs["src_lang"] = args.src_lang
if args.tgt_lang is not None:
dataset_kwargs["tgt_lang"] = args.tgt_lang
Path(args.save_dir).mkdir(exist_ok=True)
results, num_replicas = eval_data_dir(
args.data_dir,
json_save_dir,
args.model_name,
type_path=args.type_path,
bs=args.bs,
fp16=args.fp16,
task=args.task,
local_rank=args.local_rank,
n_obs=args.n_obs,
max_source_length=args.max_source_length,
num_return_sequences=args.num_return_sequences,
prefix=args.prefix,
dataset_kwargs=dataset_kwargs,
**generate_kwargs,
)
if args.local_rank <= 0:
save_dir = Path(args.save_dir)
save_dir.mkdir(exist_ok=True)
partial_results = gather_results_from_each_node(num_replicas, json_save_dir, args.sync_timeout)
preds = combine_partial_results(partial_results)
if args.num_return_sequences > 1:
save_path = save_dir.joinpath("pseudolabel_results.json")
print(f"Saving aggregated results at {save_path}, intermediate in {json_save_dir}/")
save_json(preds, save_path)
return
tgt_file = Path(args.data_dir).joinpath(args.type_path + ".target")
with open(tgt_file) as f:
labels = [x.rstrip() for x in f.readlines()][: len(preds)]
# Calculate metrics, save metrics, and save _generations.txt
calc_bleu = "translation" in args.task
score_fn = calculate_bleu if calc_bleu else calculate_rouge
metric_name = "bleu" if calc_bleu else "rouge"
metrics: Dict = score_fn(preds, labels)
metrics["n_obs"] = len(preds)
runtime = time.time() - start_time
metrics["seconds_per_sample"] = round(runtime / metrics["n_obs"], 4)
metrics["n_gpus"] = num_replicas
# TODO(@stas00): add whatever metadata to metrics
metrics_save_path = save_dir.joinpath(f"{args.type_path}_{metric_name}.json")
save_json(metrics, metrics_save_path, indent=None)
print(metrics)
write_txt_file(preds, save_dir.joinpath(f"{args.type_path}_generations.txt"))
if args.debug:
write_txt_file(labels, save_dir.joinpath(f"{args.type_path}.target"))
else:
shutil.rmtree(json_save_dir)
def combine_partial_results(partial_results) -> List:
"""Concatenate partial results into one file, then sort it by id."""
records = []
for partial_result in partial_results:
records.extend(partial_result)
records = sorted(records, key=lambda x: x["id"])
preds = [x["pred"] for x in records]
return preds
def gather_results_from_each_node(num_replicas, save_dir, timeout) -> List[Dict[str, List]]:
# WAIT FOR lots of .json files
start_wait = time.time()
logger.info("waiting for all nodes to finish")
json_data = None
while (time.time() - start_wait) < timeout:
json_files = list(save_dir.glob("rank_*.json"))
if len(json_files) < num_replicas:
continue
try:
# make sure all json files are fully saved
json_data = lmap(load_json, json_files)
return json_data
except JSONDecodeError:
continue
else:
raise TimeoutError("Rank 0 gave up on waiting for other processes")
# Unreachable
if __name__ == "__main__":
# Usage for MT:
run_generate()
| transformers-main | examples/legacy/seq2seq/run_distributed_eval.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import fire
from utils import calculate_rouge, save_json
def calculate_rouge_path(pred_path, tgt_path, save_path=None, **kwargs):
"""Kwargs will be passed to calculate_rouge"""
pred_lns = [x.strip() for x in open(pred_path).readlines()]
tgt_lns = [x.strip() for x in open(tgt_path).readlines()][: len(pred_lns)]
metrics = calculate_rouge(pred_lns, tgt_lns, **kwargs)
if save_path is not None:
save_json(metrics, save_path, indent=None)
return metrics # these print nicely
if __name__ == "__main__":
fire.Fire(calculate_rouge_path)
| transformers-main | examples/legacy/seq2seq/rouge_cli.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import itertools
import operator
import sys
from collections import OrderedDict
from run_eval import datetime_now, run_generate
from utils import ROUGE_KEYS
# A table of supported tasks and the list of scores in the order of importance to be sorted by.
# To add a new task, simply list the score names that `run_eval.run_generate()` returns
task_score_names = {
"translation": ["bleu"],
"summarization": ROUGE_KEYS,
}
def parse_search_arg(search):
groups = search.split()
entries = dict((g.split("=") for g in groups))
entry_names = list(entries.keys())
sets = [[f"--{k} {v}" for v in vs.split(":")] for k, vs in entries.items()]
matrix = [list(x) for x in itertools.product(*sets)]
return matrix, entry_names
def run_search():
"""
Run parametric search over the desired hparam space with help of ``run_eval.py``.
All the arguments except ``--search`` are passed to ``run_eval.py`` as is. The values inside of "--search" are parsed, reformatted and fed to ``run_eval.py`` as additional args.
The format for the ``--search`` value is a simple string with hparams and colon separated values to try, e.g.:
```
--search "num_beams=5:10 length_penalty=0.8:1.0:1.2 early_stopping=true:false"
```
which will generate ``12`` ``(2*3*2)`` searches for a product of each hparam. For example the example that was just used will invoke ``run_eval.py`` repeatedly with:
```
--num_beams 5 --length_penalty 0.8 --early_stopping true
--num_beams 5 --length_penalty 0.8 --early_stopping false
[...]
--num_beams 10 --length_penalty 1.2 --early_stopping false
```
On completion, this function prints a markdown table of the results sorted by the best BLEU score and the winning arguments.
"""
prog = sys.argv[0]
parser = argparse.ArgumentParser(
usage=(
"\n\nImportant: this script accepts all arguments `run_eval.py` accepts and then a few extra, therefore"
" refer to `run_eval.py -h` for the complete list."
)
)
parser.add_argument(
"--search",
type=str,
required=False,
help='param space to search, e.g. "num_beams=5:10 length_penalty=0.8:1.0:1.2"',
)
parser.add_argument(
"--bs", type=int, default=8, required=False, help="initial batch size (may get reduced if it's too big)"
)
parser.add_argument("--task", type=str, help="used for task_specific_params + metrics")
parser.add_argument(
"--info",
nargs="?",
type=str,
const=datetime_now(),
help=(
"add custom notes to be printed before the results table. If no value is passed, the current datetime"
" string will be used."
),
)
args, args_main = parser.parse_known_args()
# we share some of the args
args_main.extend(["--task", args.task])
args_normal = [prog] + args_main
# to support variations like translation_en_to_de"
task = "translation" if "translation" in args.task else "summarization"
matrix, col_names = parse_search_arg(args.search)
col_names[0:0] = task_score_names[task] # score cols first
col_widths = {col: len(str(col)) for col in col_names}
results = []
for r in matrix:
hparams = dict((x.replace("--", "").split() for x in r))
args_exp = " ".join(r).split()
args_exp.extend(["--bs", str(args.bs)]) # in case we need to reduce its size due to CUDA OOM
sys.argv = args_normal + args_exp
# XXX: need to trap CUDA OOM and lower args.bs if that happens and retry
scores = run_generate(verbose=False)
# make sure scores are first in the table
result = OrderedDict()
for score in task_score_names[task]:
result[score] = scores[score]
result.update(hparams)
results.append(result)
# find widest entries
for k, v in result.items():
l = len(str(v))
if l > col_widths[k]:
col_widths[k] = l
results_sorted = sorted(results, key=operator.itemgetter(*task_score_names[task]), reverse=True)
print(" | ".join([f"{col:{col_widths[col]}}" for col in col_names]))
print(" | ".join([f"{'-'*col_widths[col]}" for col in col_names]))
for row in results_sorted:
print(" | ".join([f"{row[col]:{col_widths[col]}}" for col in col_names]))
best = results_sorted[0]
for score in task_score_names[task]:
del best[score]
best_args = [f"--{k} {v}" for k, v in best.items()]
dyn_args = ["--bs", str(args.bs)]
if args.info:
print(f"\nInfo: {args.info}")
print("\nBest score args:")
print(" ".join(args_main + best_args + dyn_args))
return results_sorted
if __name__ == "__main__":
# Usage:
# [normal-run_eval_search.py cmd plus] \
# --search="num_beams=1:5:10 length_penalty=0.8:1:1.2 early_stopping=true:false"
#
# Example:
# PYTHONPATH="src:examples/seq2seq" python examples/seq2seq/run_eval_search.py $MODEL_NAME \
# $DATA_DIR/val.source $SAVE_DIR/test_translations.txt --reference_path $DATA_DIR/val.target \
# --score_path $SAVE_DIR/test_bleu.json --bs $BS --task translation \
# --search="num_beams=1:5:10 length_penalty=0.8:1:1.2 early_stopping=true:false"
run_search()
| transformers-main | examples/legacy/seq2seq/run_eval_search.py |
# coding=utf-8
# Copyright 2020 Huggingface
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import io
import json
import unittest
from parameterized import parameterized
from transformers import FSMTForConditionalGeneration, FSMTTokenizer
from transformers.testing_utils import get_tests_dir, require_torch, slow, torch_device
from utils import calculate_bleu
filename = get_tests_dir() + "/test_data/fsmt/fsmt_val_data.json"
with io.open(filename, "r", encoding="utf-8") as f:
bleu_data = json.load(f)
@require_torch
class ModelEvalTester(unittest.TestCase):
def get_tokenizer(self, mname):
return FSMTTokenizer.from_pretrained(mname)
def get_model(self, mname):
model = FSMTForConditionalGeneration.from_pretrained(mname).to(torch_device)
if torch_device == "cuda":
model.half()
return model
@parameterized.expand(
[
["en-ru", 26.0],
["ru-en", 22.0],
["en-de", 22.0],
["de-en", 29.0],
]
)
@slow
def test_bleu_scores(self, pair, min_bleu_score):
# note: this test is not testing the best performance since it only evals a small batch
# but it should be enough to detect a regression in the output quality
mname = f"facebook/wmt19-{pair}"
tokenizer = self.get_tokenizer(mname)
model = self.get_model(mname)
src_sentences = bleu_data[pair]["src"]
tgt_sentences = bleu_data[pair]["tgt"]
batch = tokenizer(src_sentences, return_tensors="pt", truncation=True, padding="longest").to(torch_device)
outputs = model.generate(
input_ids=batch.input_ids,
num_beams=8,
)
decoded_sentences = tokenizer.batch_decode(
outputs, skip_special_tokens=True, clean_up_tokenization_spaces=False
)
scores = calculate_bleu(decoded_sentences, tgt_sentences)
print(scores)
self.assertGreaterEqual(scores["bleu"], min_bleu_score)
| transformers-main | examples/legacy/seq2seq/old_test_fsmt_bleu_score.py |
import os
import sys
sys.path.insert(1, os.path.dirname(os.path.realpath(__file__)))
| transformers-main | examples/legacy/seq2seq/__init__.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# as due to their complexity multi-gpu tests could impact other tests, and to aid debug we have those in a separate module.
import os
import sys
from transformers.testing_utils import TestCasePlus, execute_subprocess_async, get_gpu_count, require_torch_gpu, slow
from .utils import load_json
class TestSummarizationDistillerMultiGPU(TestCasePlus):
@classmethod
def setUpClass(cls):
return cls
@slow
@require_torch_gpu
def test_distributed_eval(self):
output_dir = self.get_auto_remove_tmp_dir()
args = f"""
--model_name Helsinki-NLP/opus-mt-en-ro
--save_dir {output_dir}
--data_dir {self.test_file_dir_str}/test_data/wmt_en_ro
--num_beams 2
--task translation
""".split()
# we want this test to run even if there is only one GPU, but if there are more we use them all
n_gpu = get_gpu_count()
distributed_args = f"""
-m torch.distributed.launch
--nproc_per_node={n_gpu}
{self.test_file_dir}/run_distributed_eval.py
""".split()
cmd = [sys.executable] + distributed_args + args
execute_subprocess_async(cmd, env=self.get_env())
metrics_save_path = os.path.join(output_dir, "test_bleu.json")
metrics = load_json(metrics_save_path)
# print(metrics)
self.assertGreaterEqual(metrics["bleu"], 25)
| transformers-main | examples/legacy/seq2seq/old_test_seq2seq_examples_multi_gpu.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from pathlib import Path
import fire
from tqdm import tqdm
def download_wmt_dataset(src_lang="ro", tgt_lang="en", dataset="wmt16", save_dir=None) -> None:
"""Download a dataset using the datasets package and save it to the format expected by finetune.py
Format of save_dir: train.source, train.target, val.source, val.target, test.source, test.target.
Args:
src_lang: <str> source language
tgt_lang: <str> target language
dataset: <str> wmt16, wmt17, etc. wmt16 is a good start as it's small. To get the full list run `import datasets; print([d.id for d in datasets.list_datasets() if "wmt" in d.id])`
save_dir: <str>, where to save the datasets, defaults to f'{dataset}-{src_lang}-{tgt_lang}'
Usage:
>>> download_wmt_dataset('ro', 'en', dataset='wmt16') # saves to wmt16-ro-en
"""
try:
import datasets
except (ModuleNotFoundError, ImportError):
raise ImportError("run pip install datasets")
pair = f"{src_lang}-{tgt_lang}"
print(f"Converting {dataset}-{pair}")
ds = datasets.load_dataset(dataset, pair)
if save_dir is None:
save_dir = f"{dataset}-{pair}"
save_dir = Path(save_dir)
save_dir.mkdir(exist_ok=True)
for split in ds.keys():
print(f"Splitting {split} with {ds[split].num_rows} records")
# to save to val.source, val.target like summary datasets
fn = "val" if split == "validation" else split
src_path = save_dir.joinpath(f"{fn}.source")
tgt_path = save_dir.joinpath(f"{fn}.target")
src_fp = src_path.open("w+")
tgt_fp = tgt_path.open("w+")
# reader is the bottleneck so writing one record at a time doesn't slow things down
for x in tqdm(ds[split]):
ex = x["translation"]
src_fp.write(ex[src_lang] + "\n")
tgt_fp.write(ex[tgt_lang] + "\n")
print(f"Saved {dataset} dataset to {save_dir}")
if __name__ == "__main__":
fire.Fire(download_wmt_dataset)
| transformers-main | examples/legacy/seq2seq/download_wmt.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import itertools
import json
import linecache
import math
import os
import pickle
import socket
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List, Tuple, Union
import git
import numpy as np
import torch
import torch.distributed as dist
from rouge_score import rouge_scorer, scoring
from sacrebleu import corpus_bleu
from sentence_splitter import add_newline_to_end_of_each_sentence
from torch import nn
from torch.utils.data import Dataset, Sampler
from transformers import BartTokenizer, EvalPrediction, PreTrainedTokenizer, T5Tokenizer
from transformers.models.bart.modeling_bart import shift_tokens_right
from transformers.utils import cached_property
try:
from fairseq.data.data_utils import batch_by_size
FAIRSEQ_AVAILABLE = True
except (ImportError, ModuleNotFoundError):
FAIRSEQ_AVAILABLE = False
def label_smoothed_nll_loss(lprobs, target, epsilon, ignore_index=-100):
"""From fairseq"""
if target.dim() == lprobs.dim() - 1:
target = target.unsqueeze(-1)
nll_loss = -lprobs.gather(dim=-1, index=target)
smooth_loss = -lprobs.sum(dim=-1, keepdim=True)
if ignore_index is not None:
pad_mask = target.eq(ignore_index)
nll_loss.masked_fill_(pad_mask, 0.0)
smooth_loss.masked_fill_(pad_mask, 0.0)
else:
nll_loss = nll_loss.squeeze(-1)
smooth_loss = smooth_loss.squeeze(-1)
nll_loss = nll_loss.sum() # mean()? Scared to break other math.
smooth_loss = smooth_loss.sum()
eps_i = epsilon / lprobs.size(-1)
loss = (1.0 - epsilon) * nll_loss + eps_i * smooth_loss
return loss, nll_loss
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def calculate_bleu(output_lns, refs_lns, **kwargs) -> dict:
"""Uses sacrebleu's corpus_bleu implementation."""
return {"bleu": round(corpus_bleu(output_lns, [refs_lns], **kwargs).score, 4)}
def build_compute_metrics_fn(task_name: str, tokenizer: PreTrainedTokenizer) -> Callable[[EvalPrediction], Dict]:
def non_pad_len(tokens: np.ndarray) -> int:
return np.count_nonzero(tokens != tokenizer.pad_token_id)
def decode_pred(pred: EvalPrediction) -> Tuple[List[str], List[str]]:
pred_ids = pred.predictions
label_ids = pred.label_ids
pred_str = tokenizer.batch_decode(pred_ids, skip_special_tokens=True)
label_ids[label_ids == -100] = tokenizer.pad_token_id
label_str = tokenizer.batch_decode(label_ids, skip_special_tokens=True)
pred_str = lmap(str.strip, pred_str)
label_str = lmap(str.strip, label_str)
return pred_str, label_str
def summarization_metrics(pred: EvalPrediction) -> Dict:
pred_str, label_str = decode_pred(pred)
rouge: Dict = calculate_rouge(pred_str, label_str)
summ_len = np.round(np.mean(lmap(non_pad_len, pred.predictions)), 1)
rouge.update({"gen_len": summ_len})
return rouge
def translation_metrics(pred: EvalPrediction) -> Dict:
pred_str, label_str = decode_pred(pred)
bleu: Dict = calculate_bleu(pred_str, label_str)
gen_len = np.round(np.mean(lmap(non_pad_len, pred.predictions)), 1)
bleu.update({"gen_len": gen_len})
return bleu
compute_metrics_fn = summarization_metrics if "summarization" in task_name else translation_metrics
return compute_metrics_fn
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class AbstractSeq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
prefix="",
**dataset_kwargs,
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.len_file = Path(data_dir).joinpath(type_path + ".len")
if os.path.exists(self.len_file):
self.src_lens = pickle_load(self.len_file)
self.used_char_len = False
else:
self.src_lens = self.get_char_lens(self.src_file)
self.used_char_len = True
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix if prefix is not None else ""
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.pad_token_id = self.tokenizer.pad_token_id
self.dataset_kwargs = dataset_kwargs
dataset_kwargs.update({"add_prefix_space": True} if isinstance(self.tokenizer, BartTokenizer) else {})
def __len__(self):
return len(self.src_lens)
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
@cached_property
def tgt_lens(self):
"""Length in characters of target documents"""
return self.get_char_lens(self.tgt_file)
def make_sortish_sampler(self, batch_size, distributed=False, shuffle=True, **kwargs):
if distributed:
return DistributedSortishSampler(self, batch_size, shuffle=shuffle, **kwargs)
else:
return SortishSampler(self.src_lens, batch_size, shuffle=shuffle)
def make_dynamic_sampler(self, max_tokens_per_batch=1024, **kwargs):
assert FAIRSEQ_AVAILABLE, "Dynamic batch size requires `pip install fairseq`"
assert not self.used_char_len, "You must call python make_len_file.py before calling make_dynamic_sampler"
sorted_indices = list(self.make_sortish_sampler(1024, shuffle=False))
def num_tokens_in_example(i):
return min(self.src_lens[i], self.max_target_length)
# call fairseq cython function
batch_sampler: List[List[int]] = batch_by_size(
sorted_indices,
num_tokens_fn=num_tokens_in_example,
max_tokens=max_tokens_per_batch,
required_batch_size_multiple=64,
)
shuffled_batches = [batch_sampler[i] for i in np.random.permutation(range(len(batch_sampler)))]
# move the largest batch to the front to OOM quickly (uses an approximation for padding)
approximate_toks_per_batch = [max(self.src_lens[i] for i in batch) * len(batch) for batch in shuffled_batches]
largest_batch_idx = np.argmax(approximate_toks_per_batch)
shuffled_batches[0], shuffled_batches[largest_batch_idx] = (
shuffled_batches[largest_batch_idx],
shuffled_batches[0],
)
return shuffled_batches
def __getitem__(self, item):
raise NotImplementedError("You must implement this")
def collate_fn(self, batch):
raise NotImplementedError("You must implement this")
class LegacySeq2SeqDataset(AbstractSeq2SeqDataset):
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
"""Call tokenizer on src and tgt_lines"""
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
source_inputs = self.encode_line(self.tokenizer, source_line, self.max_source_length)
target_inputs = self.encode_line(self.tokenizer, tgt_line, self.max_target_length)
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"labels": target_ids,
}
def encode_line(self, tokenizer, line, max_length, pad_to_max_length=True, return_tensors="pt"):
"""Only used by LegacyDataset"""
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
**self.dataset_kwargs,
)
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["labels"] for x in batch])
pad_token_id = self.pad_token_id
y = trim_batch(target_ids, pad_token_id)
source_ids, source_mask = trim_batch(input_ids, pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"labels": y,
}
return batch
class Seq2SeqDataset(AbstractSeq2SeqDataset):
"""A dataset that calls prepare_seq2seq_batch."""
def __getitem__(self, index) -> Dict[str, str]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
return {"tgt_texts": tgt_line, "src_texts": source_line, "id": index - 1}
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
"""Call prepare_seq2seq_batch."""
batch_encoding: Dict[str, torch.Tensor] = self.tokenizer.prepare_seq2seq_batch(
[x["src_texts"] for x in batch],
tgt_texts=[x["tgt_texts"] for x in batch],
max_length=self.max_source_length,
max_target_length=self.max_target_length,
return_tensors="pt",
**self.dataset_kwargs,
).data
batch_encoding["ids"] = torch.tensor([x["id"] for x in batch])
return batch_encoding
class Seq2SeqDataCollator:
def __init__(self, tokenizer, data_args, decoder_start_token_id, tpu_num_cores=None):
self.tokenizer = tokenizer
self.pad_token_id = tokenizer.pad_token_id
self.decoder_start_token_id = decoder_start_token_id
assert (
self.pad_token_id is not None
), f"pad_token_id is not defined for ({self.tokenizer.__class__.__name__}), it must be defined."
self.data_args = data_args
self.tpu_num_cores = tpu_num_cores
self.dataset_kwargs = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) else {}
if data_args.src_lang is not None:
self.dataset_kwargs["src_lang"] = data_args.src_lang
if data_args.tgt_lang is not None:
self.dataset_kwargs["tgt_lang"] = data_args.tgt_lang
def __call__(self, batch) -> Dict[str, torch.Tensor]:
if hasattr(self.tokenizer, "prepare_seq2seq_batch"):
batch = self._encode(batch)
input_ids, attention_mask, labels = (
batch["input_ids"],
batch["attention_mask"],
batch["labels"],
)
else:
input_ids = torch.stack([x["input_ids"] for x in batch])
attention_mask = torch.stack([x["attention_mask"] for x in batch])
labels = torch.stack([x["labels"] for x in batch])
labels = trim_batch(labels, self.pad_token_id)
input_ids, attention_mask = trim_batch(input_ids, self.pad_token_id, attention_mask=attention_mask)
if isinstance(self.tokenizer, T5Tokenizer):
decoder_input_ids = self._shift_right_t5(labels)
else:
decoder_input_ids = shift_tokens_right(labels, self.pad_token_id, self.decoder_start_token_id)
batch = {
"input_ids": input_ids,
"attention_mask": attention_mask,
"decoder_input_ids": decoder_input_ids,
"labels": labels,
}
return batch
def _shift_right_t5(self, input_ids):
# shift inputs to the right
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[..., 1:] = input_ids[..., :-1].clone()
shifted_input_ids[..., 0] = self.pad_token_id
return shifted_input_ids
def _encode(self, batch) -> Dict[str, torch.Tensor]:
batch_encoding = self.tokenizer.prepare_seq2seq_batch(
[x["src_texts"] for x in batch],
tgt_texts=[x["tgt_texts"] for x in batch],
max_length=self.data_args.max_source_length,
max_target_length=self.data_args.max_target_length,
padding="max_length" if self.tpu_num_cores is not None else "longest", # TPU hack
return_tensors="pt",
**self.dataset_kwargs,
)
return batch_encoding.data
class SortishSampler(Sampler):
"Go through the text data by order of src length with a bit of randomness. From fastai repo."
def __init__(self, data, batch_size, shuffle=True):
self.data, self.bs, self.shuffle = data, batch_size, shuffle
def __len__(self) -> int:
return len(self.data)
def __iter__(self):
return iter(sortish_sampler_indices(self.data, self.bs, shuffle=self.shuffle))
def sortish_sampler_indices(data: List, bs: int, shuffle=True) -> np.array:
"Go through the text data by order of src length with a bit of randomness. From fastai repo."
if not shuffle:
return np.argsort(np.array(data) * -1)
def key_fn(i):
return data[i]
idxs = np.random.permutation(len(data))
sz = bs * 50
ck_idx = [idxs[i : i + sz] for i in range(0, len(idxs), sz)]
sort_idx = np.concatenate([sorted(s, key=key_fn, reverse=True) for s in ck_idx])
sz = bs
ck_idx = [sort_idx[i : i + sz] for i in range(0, len(sort_idx), sz)]
max_ck = np.argmax([key_fn(ck[0]) for ck in ck_idx]) # find the chunk with the largest key,
ck_idx[0], ck_idx[max_ck] = ck_idx[max_ck], ck_idx[0] # then make sure it goes first.
sort_idx = np.concatenate(np.random.permutation(ck_idx[1:])) if len(ck_idx) > 1 else np.array([], dtype=int)
sort_idx = np.concatenate((ck_idx[0], sort_idx))
return sort_idx
class DistributedSortishSampler(Sampler):
"""Copied from torch DistributedSampler"""
def __init__(self, dataset, batch_size, num_replicas=None, rank=None, add_extra_examples=True, shuffle=True):
if num_replicas is None:
if not dist.is_available():
raise RuntimeError("Requires distributed package to be available")
num_replicas = dist.get_world_size()
if rank is None:
if not dist.is_available():
raise RuntimeError("Requires distributed package to be available")
rank = dist.get_rank()
self.dataset = dataset
self.num_replicas = num_replicas
self.rank = rank
self.epoch = 0
if add_extra_examples:
self.num_samples = int(math.ceil(len(self.dataset) * 1.0 / self.num_replicas))
self.total_size = self.num_samples * self.num_replicas
else:
self.total_size = len(dataset)
self.num_samples = len(self.available_indices)
self.batch_size = batch_size
self.add_extra_examples = add_extra_examples
self.shuffle = shuffle
def __iter__(self) -> Iterable:
g = torch.Generator()
g.manual_seed(self.epoch)
sortish_data = [self.dataset.src_lens[i] for i in self.available_indices]
sortish_indices = sortish_sampler_indices(sortish_data, self.batch_size, shuffle=self.shuffle)
indices = [self.available_indices[i] for i in sortish_indices]
assert len(indices) == self.num_samples
return iter(indices)
@cached_property
def available_indices(self) -> np.array:
indices = list(range(len(self.dataset)))
# add extra samples to make it evenly divisible
indices += indices[: (self.total_size - len(indices))]
assert len(indices) == self.total_size
# subsample
available_indices = indices[self.rank : self.total_size : self.num_replicas]
return available_indices
def __len__(self):
return self.num_samples
def set_epoch(self, epoch):
self.epoch = epoch
logger = getLogger(__name__)
def use_task_specific_params(model, task):
"""Update config with summarization specific params."""
task_specific_params = model.config.task_specific_params
if task_specific_params is not None:
pars = task_specific_params.get(task, {})
logger.info(f"setting model.config to task specific params for {task}:\n {pars}")
logger.info("note: command line args may override some of these")
model.config.update(pars)
def pickle_load(path):
"""pickle.load(path)"""
with open(path, "rb") as f:
return pickle.load(f)
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def flatten_list(summary_ids: List[List]):
return list(itertools.chain.from_iterable(summary_ids))
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, sort_keys=True, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
try:
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
except TypeError:
return {
"repo_id": None,
"repo_sha": None,
"repo_branch": None,
"hostname": None,
}
ROUGE_KEYS = ["rouge1", "rouge2", "rougeL", "rougeLsum"]
def extract_rouge_mid_statistics(dct):
new_dict = {}
for k1, v1 in dct.items():
mid = v1.mid
new_dict[k1] = {stat: round(getattr(mid, stat), 4) for stat in ["precision", "recall", "fmeasure"]}
return new_dict
def calculate_rouge(
pred_lns: List[str],
tgt_lns: List[str],
use_stemmer=True,
rouge_keys=ROUGE_KEYS,
return_precision_and_recall=False,
bootstrap_aggregation=True,
newline_sep=True,
) -> Dict:
"""Calculate rouge using rouge_scorer package.
Args:
pred_lns: list of summaries generated by model
tgt_lns: list of groundtruth summaries (e.g. contents of val.target)
use_stemmer: Bool indicating whether Porter stemmer should be used to
strip word suffixes to improve matching.
rouge_keys: which metrics to compute, defaults to rouge1, rouge2, rougeL, rougeLsum
return_precision_and_recall: (False) whether to also return precision and recall.
bootstrap_aggregation: whether to do the typical bootstrap resampling of scores. Defaults to True, if False
this function returns a collections.defaultdict[metric: list of values for each observation for each subscore]``
newline_sep:(default=True) whether to add newline between sentences. This is essential for calculation rougeL
on multi sentence summaries (CNN/DM dataset).
Returns:
Dict[score: value] if aggregate else defaultdict(list) keyed by rouge_keys
"""
scorer = rouge_scorer.RougeScorer(rouge_keys, use_stemmer=use_stemmer)
aggregator = scoring.BootstrapAggregator()
for pred, tgt in zip(tgt_lns, pred_lns):
# rougeLsum expects "\n" separated sentences within a summary
if newline_sep:
pred = add_newline_to_end_of_each_sentence(pred)
tgt = add_newline_to_end_of_each_sentence(tgt)
scores = scorer.score(pred, tgt)
aggregator.add_scores(scores)
if bootstrap_aggregation:
result = aggregator.aggregate()
if return_precision_and_recall:
return extract_rouge_mid_statistics(result) # here we return dict
else:
return {k: round(v.mid.fmeasure * 100, 4) for k, v in result.items()}
else:
return aggregator._scores # here we return defaultdict(list)
# Utilities for freezing parameters and checking whether they are frozen
def freeze_params(model: nn.Module):
"""Set requires_grad=False for each of model.parameters()"""
for par in model.parameters():
par.requires_grad = False
def freeze_embeds(model):
"""Freeze token embeddings and positional embeddings for bart, just token embeddings for t5."""
model_type = model.config.model_type
if model_type in ["t5", "mt5"]:
freeze_params(model.shared)
for d in [model.encoder, model.decoder]:
freeze_params(d.embed_tokens)
elif model_type == "fsmt":
for d in [model.model.encoder, model.model.decoder]:
freeze_params(d.embed_positions)
freeze_params(d.embed_tokens)
else:
freeze_params(model.model.shared)
for d in [model.model.encoder, model.model.decoder]:
freeze_params(d.embed_positions)
freeze_params(d.embed_tokens)
def grad_status(model: nn.Module) -> Iterable:
return (par.requires_grad for par in model.parameters())
def any_requires_grad(model: nn.Module) -> bool:
return any(grad_status(model))
def assert_all_frozen(model):
model_grads: List[bool] = list(grad_status(model))
n_require_grad = sum(lmap(int, model_grads))
npars = len(model_grads)
assert not any(model_grads), f"{n_require_grad/npars:.1%} of {npars} weights require grad"
def assert_not_all_frozen(model):
model_grads: List[bool] = list(grad_status(model))
npars = len(model_grads)
assert any(model_grads), f"none of {npars} weights require grad"
def parse_numeric_n_bool_cl_kwargs(unparsed_args: List[str]) -> Dict[str, Union[int, float, bool]]:
"""
Parse an argv list of unspecified command line args to a dict.
Assumes all values are either numeric or boolean in the form of true/false.
"""
result = {}
assert len(unparsed_args) % 2 == 0, f"got odd number of unparsed args: {unparsed_args}"
num_pairs = len(unparsed_args) // 2
for pair_num in range(num_pairs):
i = 2 * pair_num
assert unparsed_args[i].startswith("--")
if unparsed_args[i + 1].lower() == "true":
value = True
elif unparsed_args[i + 1].lower() == "false":
value = False
else:
try:
value = int(unparsed_args[i + 1])
except ValueError:
value = float(unparsed_args[i + 1]) # this can raise another informative ValueError
result[unparsed_args[i][2:]] = value
return result
def write_txt_file(ordered_tgt, path):
f = Path(path).open("w")
for ln in ordered_tgt:
f.write(ln + "\n")
f.flush()
def chunks(lst, n):
"""Yield successive n-sized chunks from lst."""
for i in range(0, len(lst), n):
yield lst[i : i + n]
def check_output_dir(args, expected_items=0):
"""
Checks whether to bail out if output_dir already exists and has more than expected_items in it
`args`: needs to have the following attributes of `args`:
- output_dir
- do_train
- overwrite_output_dir
`expected_items`: normally 0 (default) - i.e. empty dir, but in some cases a few files are expected (e.g. recovery from OOM)
"""
if (
os.path.exists(args.output_dir)
and len(os.listdir(args.output_dir)) > expected_items
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({args.output_dir}) already exists and "
f"has {len(os.listdir(args.output_dir))} items in it (expected {expected_items} items). "
"Use --overwrite_output_dir to overcome."
)
| transformers-main | examples/legacy/seq2seq/utils.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Fill examples with bitext up to max_tokens without breaking up examples.
[['I went', 'yo fui'],
['to the store', 'a la tienda']
]
=> ['I went to the store', 'yo fui a la tienda']
"""
import argparse
import shutil
from pathlib import Path
from tqdm import tqdm
from transformers import AutoTokenizer
def pack_examples(tok, src_examples, tgt_examples, max_tokens=1024):
finished_src, finished_tgt = [], []
sorted_examples = list(zip(src_examples, tgt_examples))
new_src, new_tgt = sorted_examples[0]
def is_too_big(strang):
return tok(strang, return_tensors="pt").input_ids.shape[1] > max_tokens
for src, tgt in tqdm(sorted_examples[1:]):
cand_src = new_src + " " + src
cand_tgt = new_tgt + " " + tgt
if is_too_big(cand_src) or is_too_big(cand_tgt): # cant fit, finalize example
finished_src.append(new_src)
finished_tgt.append(new_tgt)
new_src, new_tgt = src, tgt
else: # can fit, keep adding
new_src, new_tgt = cand_src, cand_tgt
# cleanup
if new_src:
assert new_tgt
finished_src.append(new_src)
finished_tgt.append(new_tgt)
return finished_src, finished_tgt
def pack_data_dir(tok, data_dir: Path, max_tokens, save_path):
save_path = Path(save_path)
save_path.mkdir(exist_ok=True)
for split in ["train"]:
src_path, tgt_path = data_dir / f"{split}.source", data_dir / f"{split}.target"
src_docs = [x.rstrip() for x in Path(src_path).open().readlines()]
tgt_docs = [x.rstrip() for x in Path(tgt_path).open().readlines()]
packed_src, packed_tgt = pack_examples(tok, src_docs, tgt_docs, max_tokens)
print(f"packed {split} split from {len(src_docs)} examples -> {len(packed_src)}.")
Path(save_path / f"{split}.source").open("w").write("\n".join(packed_src))
Path(save_path / f"{split}.target").open("w").write("\n".join(packed_tgt))
for split in ["val", "test"]:
src_path, tgt_path = data_dir / f"{split}.source", data_dir / f"{split}.target"
shutil.copyfile(src_path, save_path / f"{split}.source")
shutil.copyfile(tgt_path, save_path / f"{split}.target")
def packer_cli():
parser = argparse.ArgumentParser()
parser.add_argument("--tok_name", type=str, help="like facebook/bart-large-cnn,t5-base, etc.")
parser.add_argument("--max_seq_len", type=int, default=128)
parser.add_argument("--data_dir", type=str)
parser.add_argument("--save_path", type=str)
args = parser.parse_args()
tokenizer = AutoTokenizer.from_pretrained(args.tok_name)
return pack_data_dir(tokenizer, Path(args.data_dir), args.max_seq_len, args.save_path)
if __name__ == "__main__":
packer_cli()
| transformers-main | examples/legacy/seq2seq/pack_dataset.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Any, Dict, List, Optional, Tuple, Union
import torch
from torch import nn
from torch.utils.data import DistributedSampler, RandomSampler
from transformers import PreTrainedModel, Trainer, logging
from transformers.integrations import is_fairscale_available
from transformers.models.fsmt.configuration_fsmt import FSMTConfig
from transformers.optimization import (
Adafactor,
AdamW,
get_constant_schedule,
get_constant_schedule_with_warmup,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.trainer_pt_utils import get_tpu_sampler
from transformers.training_args import ParallelMode
from transformers.utils import is_torch_tpu_available
if is_fairscale_available():
from fairscale.optim import OSS
logger = logging.get_logger(__name__)
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
"constant": get_constant_schedule,
"constant_w_warmup": get_constant_schedule_with_warmup,
}
class Seq2SeqTrainer(Trainer):
def __init__(self, config=None, data_args=None, *args, **kwargs):
super().__init__(*args, **kwargs)
if config is None:
assert isinstance(self.model, PreTrainedModel), (
"If no `config` is passed the model to be trained has to be of type `PreTrainedModel`, but is"
f" {self.model.__class__}"
)
self.config = self.model.config
else:
self.config = config
self.data_args = data_args
self.vocab_size = self.config.tgt_vocab_size if isinstance(self.config, FSMTConfig) else self.config.vocab_size
if self.args.label_smoothing != 0 or (self.data_args is not None and self.data_args.ignore_pad_token_for_loss):
assert self.config.pad_token_id is not None, (
"Make sure that `config.pad_token_id` is correcly defined when ignoring `pad_token` for loss"
" calculation or doing label smoothing."
)
if self.config.pad_token_id is None and self.config.eos_token_id is not None:
logger.warning(
f"The `config.pad_token_id` is `None`. Using `config.eos_token_id` = {self.config.eos_token_id} for"
" padding.."
)
if self.args.label_smoothing == 0:
self.loss_fn = torch.nn.CrossEntropyLoss(ignore_index=self.config.pad_token_id)
else:
# dynamically import label_smoothed_nll_loss
from utils import label_smoothed_nll_loss
self.loss_fn = label_smoothed_nll_loss
def create_optimizer_and_scheduler(self, num_training_steps: int):
"""
Setup the optimizer and the learning rate scheduler.
We provide a reasonable default that works well. If you want to use something else, you can pass a tuple in the
Trainer's init through :obj:`optimizers`, or subclass and override this method in a subclass.
"""
if self.optimizer is None:
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in self.model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": self.args.weight_decay,
},
{
"params": [p for n, p in self.model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
optimizer_cls = Adafactor if self.args.adafactor else AdamW
if self.args.adafactor:
optimizer_cls = Adafactor
optimizer_kwargs = {"scale_parameter": False, "relative_step": False}
else:
optimizer_cls = AdamW
optimizer_kwargs = {
"betas": (self.args.adam_beta1, self.args.adam_beta2),
"eps": self.args.adam_epsilon,
}
optimizer_kwargs["lr"] = self.args.learning_rate
if self.sharded_ddp:
self.optimizer = OSS(
params=optimizer_grouped_parameters,
optim=optimizer_cls,
**optimizer_kwargs,
)
else:
self.optimizer = optimizer_cls(optimizer_grouped_parameters, **optimizer_kwargs)
if self.lr_scheduler is None:
self.lr_scheduler = self._get_lr_scheduler(num_training_steps)
else: # ignoring --lr_scheduler
logger.warning("scheduler is passed to `Seq2SeqTrainer`, `--lr_scheduler` arg is ignored.")
def _get_lr_scheduler(self, num_training_steps):
schedule_func = arg_to_scheduler[self.args.lr_scheduler]
if self.args.lr_scheduler == "constant":
scheduler = schedule_func(self.optimizer)
elif self.args.lr_scheduler == "constant_w_warmup":
scheduler = schedule_func(self.optimizer, num_warmup_steps=self.args.warmup_steps)
else:
scheduler = schedule_func(
self.optimizer, num_warmup_steps=self.args.warmup_steps, num_training_steps=num_training_steps
)
return scheduler
def _get_train_sampler(self) -> Optional[torch.utils.data.Sampler]:
if isinstance(self.train_dataset, torch.utils.data.IterableDataset):
return None
elif is_torch_tpu_available():
return get_tpu_sampler(self.train_dataset)
else:
if self.args.sortish_sampler:
self.train_dataset.make_sortish_sampler(
self.args.per_device_train_batch_size,
distributed=(self.args.parallel_mode == ParallelMode.DISTRIBUTED),
)
return (
RandomSampler(self.train_dataset)
if self.args.local_rank == -1
else DistributedSampler(self.train_dataset)
)
def _compute_loss(self, model, inputs, labels):
if self.args.label_smoothing == 0:
if self.data_args is not None and self.data_args.ignore_pad_token_for_loss:
# force training to ignore pad token
logits = model(**inputs, use_cache=False)[0]
loss = self.loss_fn(logits.view(-1, logits.shape[-1]), labels.view(-1))
else:
# compute usual loss via models
loss, logits = model(**inputs, labels=labels, use_cache=False)[:2]
else:
# compute label smoothed loss
logits = model(**inputs, use_cache=False)[0]
lprobs = torch.nn.functional.log_softmax(logits, dim=-1)
loss, _ = self.loss_fn(lprobs, labels, self.args.label_smoothing, ignore_index=self.config.pad_token_id)
return loss, logits
def compute_loss(self, model, inputs):
labels = inputs.pop("labels")
loss, _ = self._compute_loss(model, inputs, labels)
return loss
def prediction_step(
self,
model: nn.Module,
inputs: Dict[str, Union[torch.Tensor, Any]],
prediction_loss_only: bool,
ignore_keys: Optional[List[str]] = None,
) -> Tuple[Optional[float], Optional[torch.Tensor], Optional[torch.Tensor]]:
"""
Perform an evaluation step on :obj:`model` using obj:`inputs`.
Subclass and override to inject custom behavior.
Args:
model (:obj:`nn.Module`):
The model to evaluate.
inputs (:obj:`Dict[str, Union[torch.Tensor, Any]]`):
The inputs and targets of the model.
The dictionary will be unpacked before being fed to the model. Most models expect the targets under the
argument :obj:`labels`. Check your model's documentation for all accepted arguments.
prediction_loss_only (:obj:`bool`):
Whether or not to return the loss only.
Return:
Tuple[Optional[float], Optional[torch.Tensor], Optional[torch.Tensor]]:
A tuple with the loss, logits and labels (each being optional).
"""
inputs = self._prepare_inputs(inputs)
gen_kwargs = {
"max_length": self.data_args.val_max_target_length
if self.data_args is not None
else self.config.max_length,
"num_beams": self.data_args.eval_beams if self.data_args is not None else self.config.num_beams,
}
if self.args.predict_with_generate and not self.args.prediction_loss_only:
generated_tokens = self.model.generate(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
**gen_kwargs,
)
# in case the batch is shorter than max length, the output should be padded
if generated_tokens.shape[-1] < gen_kwargs["max_length"]:
generated_tokens = self._pad_tensors_to_max_len(generated_tokens, gen_kwargs["max_length"])
labels = inputs.pop("labels")
with torch.no_grad():
# compute loss on predict data
loss, logits = self._compute_loss(model, inputs, labels)
loss = loss.mean().detach()
if self.args.prediction_loss_only:
return (loss, None, None)
logits = generated_tokens if self.args.predict_with_generate else logits
if labels.shape[-1] < gen_kwargs["max_length"]:
labels = self._pad_tensors_to_max_len(labels, gen_kwargs["max_length"])
return (loss, logits, labels)
def _pad_tensors_to_max_len(self, tensor, max_length):
# If PAD token is not defined at least EOS token has to be defined
pad_token_id = self.config.pad_token_id if self.config.pad_token_id is not None else self.config.eos_token_id
if pad_token_id is None:
raise ValueError(
"Make sure that either `config.pad_token_id` or `config.eos_token_id` is defined if tensor has to be"
f" padded to `max_length`={max_length}"
)
padded_tensor = pad_token_id * torch.ones(
(tensor.shape[0], max_length), dtype=tensor.dtype, device=tensor.device
)
padded_tensor[:, : tensor.shape[-1]] = tensor
return padded_tensor
| transformers-main | examples/legacy/seq2seq/seq2seq_trainer.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import logging
import os
import sys
from pathlib import Path
from unittest.mock import patch
from parameterized import parameterized
from run_eval import run_generate
from run_eval_search import run_search
from transformers.testing_utils import CaptureStdout, TestCasePlus, slow
from utils import ROUGE_KEYS
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def _dump_articles(path: Path, articles: list):
content = "\n".join(articles)
Path(path).open("w").writelines(content)
T5_TINY = "patrickvonplaten/t5-tiny-random"
BART_TINY = "sshleifer/bart-tiny-random"
MBART_TINY = "sshleifer/tiny-mbart"
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
logging.disable(logging.CRITICAL) # remove noisy download output from tracebacks
class TestTheRest(TestCasePlus):
def run_eval_tester(self, model):
input_file_name = Path(self.get_auto_remove_tmp_dir()) / "utest_input.source"
output_file_name = input_file_name.parent / "utest_output.txt"
assert not output_file_name.exists()
articles = [" New York (CNN)When Liana Barrientos was 23 years old, she got married in Westchester County."]
_dump_articles(input_file_name, articles)
score_path = str(Path(self.get_auto_remove_tmp_dir()) / "scores.json")
task = "translation_en_to_de" if model == T5_TINY else "summarization"
testargs = f"""
run_eval_search.py
{model}
{input_file_name}
{output_file_name}
--score_path {score_path}
--task {task}
--num_beams 2
--length_penalty 2.0
""".split()
with patch.object(sys, "argv", testargs):
run_generate()
assert Path(output_file_name).exists()
# os.remove(Path(output_file_name))
# test one model to quickly (no-@slow) catch simple problems and do an
# extensive testing of functionality with multiple models as @slow separately
def test_run_eval(self):
self.run_eval_tester(T5_TINY)
# any extra models should go into the list here - can be slow
@parameterized.expand([BART_TINY, MBART_TINY])
@slow
def test_run_eval_slow(self, model):
self.run_eval_tester(model)
# testing with 2 models to validate: 1. translation (t5) 2. summarization (mbart)
@parameterized.expand([T5_TINY, MBART_TINY])
@slow
def test_run_eval_search(self, model):
input_file_name = Path(self.get_auto_remove_tmp_dir()) / "utest_input.source"
output_file_name = input_file_name.parent / "utest_output.txt"
assert not output_file_name.exists()
text = {
"en": ["Machine learning is great, isn't it?", "I like to eat bananas", "Tomorrow is another great day!"],
"de": [
"Maschinelles Lernen ist großartig, oder?",
"Ich esse gerne Bananen",
"Morgen ist wieder ein toller Tag!",
],
}
tmp_dir = Path(self.get_auto_remove_tmp_dir())
score_path = str(tmp_dir / "scores.json")
reference_path = str(tmp_dir / "val.target")
_dump_articles(input_file_name, text["en"])
_dump_articles(reference_path, text["de"])
task = "translation_en_to_de" if model == T5_TINY else "summarization"
testargs = f"""
run_eval_search.py
{model}
{str(input_file_name)}
{str(output_file_name)}
--score_path {score_path}
--reference_path {reference_path}
--task {task}
""".split()
testargs.extend(["--search", "num_beams=1:2 length_penalty=0.9:1.0"])
with patch.object(sys, "argv", testargs):
with CaptureStdout() as cs:
run_search()
expected_strings = [" num_beams | length_penalty", model, "Best score args"]
un_expected_strings = ["Info"]
if "translation" in task:
expected_strings.append("bleu")
else:
expected_strings.extend(ROUGE_KEYS)
for w in expected_strings:
assert w in cs.out
for w in un_expected_strings:
assert w not in cs.out
assert Path(output_file_name).exists()
os.remove(Path(output_file_name))
| transformers-main | examples/legacy/seq2seq/old_test_seq2seq_examples.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import fire
from transformers import AutoConfig, AutoModelForSeq2SeqLM, AutoTokenizer
def save_randomly_initialized_version(config_name: str, save_dir: str, **config_kwargs):
"""Save a randomly initialized version of a model using a pretrained config.
Args:
config_name: which config to use
save_dir: where to save the resulting model and tokenizer
config_kwargs: Passed to AutoConfig
Usage::
save_randomly_initialized_version("facebook/bart-large-cnn", "distilbart_random_cnn_6_3", encoder_layers=6, decoder_layers=3, num_beams=3)
"""
cfg = AutoConfig.from_pretrained(config_name, **config_kwargs)
model = AutoModelForSeq2SeqLM.from_config(cfg)
model.save_pretrained(save_dir)
AutoTokenizer.from_pretrained(config_name).save_pretrained(save_dir)
return model
if __name__ == "__main__":
fire.Fire(save_randomly_initialized_version)
| transformers-main | examples/legacy/seq2seq/save_randomly_initialized_model.py |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
A simple launcher script for TPU training
Inspired by https://github.com/pytorch/pytorch/blob/master/torch/distributed/launch.py
::
>>> python xla_spawn.py --num_cores=NUM_CORES_YOU_HAVE
YOUR_TRAINING_SCRIPT.py (--arg1 --arg2 --arg3 and all other
arguments of your training script)
"""
import importlib
import sys
from argparse import REMAINDER, ArgumentParser
from pathlib import Path
import torch_xla.distributed.xla_multiprocessing as xmp
def parse_args():
"""
Helper function parsing the command line options
@retval ArgumentParser
"""
parser = ArgumentParser(
description=(
"PyTorch TPU distributed training launch helper utility that will spawn up multiple distributed processes"
)
)
# Optional arguments for the launch helper
parser.add_argument("--num_cores", type=int, default=1, help="Number of TPU cores to use (1 or 8).")
# positional
parser.add_argument(
"training_script",
type=str,
help=(
"The full path to the single TPU training "
"program/script to be launched in parallel, "
"followed by all the arguments for the "
"training script"
),
)
# rest from the training program
parser.add_argument("training_script_args", nargs=REMAINDER)
return parser.parse_args()
def main():
args = parse_args()
# Import training_script as a module.
script_fpath = Path(args.training_script)
sys.path.append(str(script_fpath.parent.resolve()))
mod_name = script_fpath.stem
mod = importlib.import_module(mod_name)
# Patch sys.argv
sys.argv = [args.training_script] + args.training_script_args + ["--tpu_num_cores", str(args.num_cores)]
xmp.spawn(mod._mp_fn, args=(), nprocs=args.num_cores)
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/seq2seq/xla_spawn.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import fire
from torch.utils.data import DataLoader
from tqdm import tqdm
from transformers import AutoTokenizer
from utils import Seq2SeqDataset, pickle_save
def save_len_file(
tokenizer_name, data_dir, max_source_length=1024, max_target_length=1024, consider_target=False, **kwargs
):
"""Save max(src_len, tgt_len) for each example to allow dynamic batching."""
tok = AutoTokenizer.from_pretrained(tokenizer_name)
train_ds = Seq2SeqDataset(tok, data_dir, max_source_length, max_target_length, type_path="train", **kwargs)
pad = tok.pad_token_id
def get_lens(ds):
dl = tqdm(
DataLoader(ds, batch_size=512, num_workers=8, shuffle=False, collate_fn=ds.collate_fn),
desc=str(ds.len_file),
)
max_lens = []
for batch in dl:
src_lens = batch["input_ids"].ne(pad).sum(1).tolist()
tgt_lens = batch["labels"].ne(pad).sum(1).tolist()
if consider_target:
for src, tgt in zip(src_lens, tgt_lens):
max_lens.append(max(src, tgt))
else:
max_lens.extend(src_lens)
return max_lens
train_lens = get_lens(train_ds)
val_ds = Seq2SeqDataset(tok, data_dir, max_source_length, max_target_length, type_path="val", **kwargs)
val_lens = get_lens(val_ds)
pickle_save(train_lens, train_ds.len_file)
pickle_save(val_lens, val_ds.len_file)
if __name__ == "__main__":
fire.Fire(save_len_file)
| transformers-main | examples/legacy/seq2seq/save_len_file.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Union
import fire
import torch
from tqdm import tqdm
def convert(src_path: str, map_location: str = "cpu", save_path: Union[str, None] = None) -> None:
"""Convert a pytorch_model.bin or model.pt file to torch.float16 for faster downloads, less disk space."""
state_dict = torch.load(src_path, map_location=map_location)
for k, v in tqdm(state_dict.items()):
if not isinstance(v, torch.Tensor):
raise TypeError("FP16 conversion only works on paths that are saved state dicts, like pytorch_model.bin")
state_dict[k] = v.half()
if save_path is None: # overwrite src_path
save_path = src_path
torch.save(state_dict, save_path)
if __name__ == "__main__":
fire.Fire(convert)
| transformers-main | examples/legacy/seq2seq/convert_model_to_fp16.py |
#!/usr/bin/env python
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from pathlib import Path
import fire
def minify(src_dir: str, dest_dir: str, n: int):
"""Write first n lines of each file f in src_dir to dest_dir/f"""
src_dir = Path(src_dir)
dest_dir = Path(dest_dir)
dest_dir.mkdir(exist_ok=True)
for path in src_dir.iterdir():
new = [x.rstrip() for x in list(path.open().readlines())][:n]
dest_path = dest_dir.joinpath(path.name)
print(dest_path)
dest_path.open("w").write("\n".join(new))
if __name__ == "__main__":
fire.Fire(minify)
| transformers-main | examples/legacy/seq2seq/minify_dataset.py |
#!/usr/bin/env python
import io
import json
import subprocess
pairs = [
["en", "ru"],
["ru", "en"],
["en", "de"],
["de", "en"],
]
n_objs = 8
def get_all_data(pairs, n_objs):
text = {}
for src, tgt in pairs:
pair = f"{src}-{tgt}"
cmd = f"sacrebleu -t wmt19 -l {pair} --echo src".split()
src_lines = subprocess.run(cmd, stdout=subprocess.PIPE).stdout.decode("utf-8").splitlines()
cmd = f"sacrebleu -t wmt19 -l {pair} --echo ref".split()
tgt_lines = subprocess.run(cmd, stdout=subprocess.PIPE).stdout.decode("utf-8").splitlines()
text[pair] = {"src": src_lines[:n_objs], "tgt": tgt_lines[:n_objs]}
return text
text = get_all_data(pairs, n_objs)
filename = "./fsmt_val_data.json"
with io.open(filename, "w", encoding="utf-8") as f:
bleu_data = json.dump(text, f, indent=2, ensure_ascii=False)
| transformers-main | examples/legacy/seq2seq/test_data/fsmt/build-eval-data.py |
import argparse
import glob
import logging
import os
from argparse import Namespace
from importlib import import_module
import numpy as np
import torch
from lightning_base import BaseTransformer, add_generic_args, generic_train
from seqeval.metrics import accuracy_score, f1_score, precision_score, recall_score
from torch.nn import CrossEntropyLoss
from torch.utils.data import DataLoader, TensorDataset
from utils_ner import TokenClassificationTask
logger = logging.getLogger(__name__)
class NERTransformer(BaseTransformer):
"""
A training module for NER. See BaseTransformer for the core options.
"""
mode = "token-classification"
def __init__(self, hparams):
if type(hparams) == dict:
hparams = Namespace(**hparams)
module = import_module("tasks")
try:
token_classification_task_clazz = getattr(module, hparams.task_type)
self.token_classification_task: TokenClassificationTask = token_classification_task_clazz()
except AttributeError:
raise ValueError(
f"Task {hparams.task_type} needs to be defined as a TokenClassificationTask subclass in {module}. "
f"Available tasks classes are: {TokenClassificationTask.__subclasses__()}"
)
self.labels = self.token_classification_task.get_labels(hparams.labels)
self.pad_token_label_id = CrossEntropyLoss().ignore_index
super().__init__(hparams, len(self.labels), self.mode)
def forward(self, **inputs):
return self.model(**inputs)
def training_step(self, batch, batch_num):
"Compute loss and log."
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if self.config.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if self.config.model_type in ["bert", "xlnet"] else None
) # XLM and RoBERTa don"t use token_type_ids
outputs = self(**inputs)
loss = outputs[0]
# tensorboard_logs = {"loss": loss, "rate": self.lr_scheduler.get_last_lr()[-1]}
return {"loss": loss}
def prepare_data(self):
"Called to initialize data. Use the call to construct features"
args = self.hparams
for mode in ["train", "dev", "test"]:
cached_features_file = self._feature_file(mode)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
examples = self.token_classification_task.read_examples_from_file(args.data_dir, mode)
features = self.token_classification_task.convert_examples_to_features(
examples,
self.labels,
args.max_seq_length,
self.tokenizer,
cls_token_at_end=bool(self.config.model_type in ["xlnet"]),
cls_token=self.tokenizer.cls_token,
cls_token_segment_id=2 if self.config.model_type in ["xlnet"] else 0,
sep_token=self.tokenizer.sep_token,
sep_token_extra=False,
pad_on_left=bool(self.config.model_type in ["xlnet"]),
pad_token=self.tokenizer.pad_token_id,
pad_token_segment_id=self.tokenizer.pad_token_type_id,
pad_token_label_id=self.pad_token_label_id,
)
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
def get_dataloader(self, mode: int, batch_size: int, shuffle: bool = False) -> DataLoader:
"Load datasets. Called after prepare data."
cached_features_file = self._feature_file(mode)
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
if features[0].token_type_ids is not None:
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
else:
all_token_type_ids = torch.tensor([0 for f in features], dtype=torch.long)
# HACK(we will not use this anymore soon)
all_label_ids = torch.tensor([f.label_ids for f in features], dtype=torch.long)
return DataLoader(
TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_label_ids), batch_size=batch_size
)
def validation_step(self, batch, batch_nb):
"""Compute validation""" ""
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if self.config.model_type != "distilbert":
inputs["token_type_ids"] = (
batch[2] if self.config.model_type in ["bert", "xlnet"] else None
) # XLM and RoBERTa don"t use token_type_ids
outputs = self(**inputs)
tmp_eval_loss, logits = outputs[:2]
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
return {"val_loss": tmp_eval_loss.detach().cpu(), "pred": preds, "target": out_label_ids}
def _eval_end(self, outputs):
"Evaluation called for both Val and Test"
val_loss_mean = torch.stack([x["val_loss"] for x in outputs]).mean()
preds = np.concatenate([x["pred"] for x in outputs], axis=0)
preds = np.argmax(preds, axis=2)
out_label_ids = np.concatenate([x["target"] for x in outputs], axis=0)
label_map = dict(enumerate(self.labels))
out_label_list = [[] for _ in range(out_label_ids.shape[0])]
preds_list = [[] for _ in range(out_label_ids.shape[0])]
for i in range(out_label_ids.shape[0]):
for j in range(out_label_ids.shape[1]):
if out_label_ids[i, j] != self.pad_token_label_id:
out_label_list[i].append(label_map[out_label_ids[i][j]])
preds_list[i].append(label_map[preds[i][j]])
results = {
"val_loss": val_loss_mean,
"accuracy_score": accuracy_score(out_label_list, preds_list),
"precision": precision_score(out_label_list, preds_list),
"recall": recall_score(out_label_list, preds_list),
"f1": f1_score(out_label_list, preds_list),
}
ret = dict(results.items())
ret["log"] = results
return ret, preds_list, out_label_list
def validation_epoch_end(self, outputs):
# when stable
ret, preds, targets = self._eval_end(outputs)
logs = ret["log"]
return {"val_loss": logs["val_loss"], "log": logs, "progress_bar": logs}
def test_epoch_end(self, outputs):
# updating to test_epoch_end instead of deprecated test_end
ret, predictions, targets = self._eval_end(outputs)
# Converting to the dict required by pl
# https://github.com/PyTorchLightning/pytorch-lightning/blob/master/\
# pytorch_lightning/trainer/logging.py#L139
logs = ret["log"]
# `val_loss` is the key returned by `self._eval_end()` but actually refers to `test_loss`
return {"avg_test_loss": logs["val_loss"], "log": logs, "progress_bar": logs}
@staticmethod
def add_model_specific_args(parser, root_dir):
# Add NER specific options
BaseTransformer.add_model_specific_args(parser, root_dir)
parser.add_argument(
"--task_type", default="NER", type=str, help="Task type to fine tune in training (e.g. NER, POS, etc)"
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--labels",
default="",
type=str,
help="Path to a file containing all labels. If not specified, CoNLL-2003 labels are used.",
)
parser.add_argument(
"--gpus",
default=0,
type=int,
help="The number of GPUs allocated for this, it is by default 0 meaning none",
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
return parser
if __name__ == "__main__":
parser = argparse.ArgumentParser()
add_generic_args(parser, os.getcwd())
parser = NERTransformer.add_model_specific_args(parser, os.getcwd())
args = parser.parse_args()
model = NERTransformer(args)
trainer = generic_train(model, args)
if args.do_predict:
# See https://github.com/huggingface/transformers/issues/3159
# pl use this default format to create a checkpoint:
# https://github.com/PyTorchLightning/pytorch-lightning/blob/master\
# /pytorch_lightning/callbacks/model_checkpoint.py#L322
checkpoints = sorted(glob.glob(os.path.join(args.output_dir, "checkpoint-epoch=*.ckpt"), recursive=True))
model = model.load_from_checkpoint(checkpoints[-1])
trainer.test(model)
| transformers-main | examples/legacy/pytorch-lightning/run_ner.py |
import argparse
import glob
import logging
import os
import time
from argparse import Namespace
import numpy as np
import torch
from lightning_base import BaseTransformer, add_generic_args, generic_train
from torch.utils.data import DataLoader, TensorDataset
from transformers import glue_compute_metrics as compute_metrics
from transformers import glue_convert_examples_to_features as convert_examples_to_features
from transformers import glue_output_modes, glue_tasks_num_labels
from transformers import glue_processors as processors
logger = logging.getLogger(__name__)
class GLUETransformer(BaseTransformer):
mode = "sequence-classification"
def __init__(self, hparams):
if type(hparams) == dict:
hparams = Namespace(**hparams)
hparams.glue_output_mode = glue_output_modes[hparams.task]
num_labels = glue_tasks_num_labels[hparams.task]
super().__init__(hparams, num_labels, self.mode)
def forward(self, **inputs):
return self.model(**inputs)
def training_step(self, batch, batch_idx):
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if self.config.model_type not in ["distilbert", "bart"]:
inputs["token_type_ids"] = batch[2] if self.config.model_type in ["bert", "xlnet", "albert"] else None
outputs = self(**inputs)
loss = outputs[0]
lr_scheduler = self.trainer.lr_schedulers[0]["scheduler"]
tensorboard_logs = {"loss": loss, "rate": lr_scheduler.get_last_lr()[-1]}
return {"loss": loss, "log": tensorboard_logs}
def prepare_data(self):
"Called to initialize data. Use the call to construct features"
args = self.hparams
processor = processors[args.task]()
self.labels = processor.get_labels()
for mode in ["train", "dev"]:
cached_features_file = self._feature_file(mode)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
else:
logger.info("Creating features from dataset file at %s", args.data_dir)
examples = (
processor.get_dev_examples(args.data_dir)
if mode == "dev"
else processor.get_train_examples(args.data_dir)
)
features = convert_examples_to_features(
examples,
self.tokenizer,
max_length=args.max_seq_length,
label_list=self.labels,
output_mode=args.glue_output_mode,
)
logger.info("Saving features into cached file %s", cached_features_file)
torch.save(features, cached_features_file)
def get_dataloader(self, mode: str, batch_size: int, shuffle: bool = False) -> DataLoader:
"Load datasets. Called after prepare data."
# We test on dev set to compare to benchmarks without having to submit to GLUE server
mode = "dev" if mode == "test" else mode
cached_features_file = self._feature_file(mode)
logger.info("Loading features from cached file %s", cached_features_file)
features = torch.load(cached_features_file)
all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long)
all_attention_mask = torch.tensor([f.attention_mask for f in features], dtype=torch.long)
all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long)
if self.hparams.glue_output_mode == "classification":
all_labels = torch.tensor([f.label for f in features], dtype=torch.long)
elif self.hparams.glue_output_mode == "regression":
all_labels = torch.tensor([f.label for f in features], dtype=torch.float)
return DataLoader(
TensorDataset(all_input_ids, all_attention_mask, all_token_type_ids, all_labels),
batch_size=batch_size,
shuffle=shuffle,
)
def validation_step(self, batch, batch_idx):
inputs = {"input_ids": batch[0], "attention_mask": batch[1], "labels": batch[3]}
if self.config.model_type not in ["distilbert", "bart"]:
inputs["token_type_ids"] = batch[2] if self.config.model_type in ["bert", "xlnet", "albert"] else None
outputs = self(**inputs)
tmp_eval_loss, logits = outputs[:2]
preds = logits.detach().cpu().numpy()
out_label_ids = inputs["labels"].detach().cpu().numpy()
return {"val_loss": tmp_eval_loss.detach().cpu(), "pred": preds, "target": out_label_ids}
def _eval_end(self, outputs) -> tuple:
val_loss_mean = torch.stack([x["val_loss"] for x in outputs]).mean().detach().cpu().item()
preds = np.concatenate([x["pred"] for x in outputs], axis=0)
if self.hparams.glue_output_mode == "classification":
preds = np.argmax(preds, axis=1)
elif self.hparams.glue_output_mode == "regression":
preds = np.squeeze(preds)
out_label_ids = np.concatenate([x["target"] for x in outputs], axis=0)
out_label_list = [[] for _ in range(out_label_ids.shape[0])]
preds_list = [[] for _ in range(out_label_ids.shape[0])]
results = {**{"val_loss": val_loss_mean}, **compute_metrics(self.hparams.task, preds, out_label_ids)}
ret = dict(results.items())
ret["log"] = results
return ret, preds_list, out_label_list
def validation_epoch_end(self, outputs: list) -> dict:
ret, preds, targets = self._eval_end(outputs)
logs = ret["log"]
return {"val_loss": logs["val_loss"], "log": logs, "progress_bar": logs}
def test_epoch_end(self, outputs) -> dict:
ret, predictions, targets = self._eval_end(outputs)
logs = ret["log"]
# `val_loss` is the key returned by `self._eval_end()` but actually refers to `test_loss`
return {"avg_test_loss": logs["val_loss"], "log": logs, "progress_bar": logs}
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--task",
default="",
type=str,
required=True,
help="The GLUE task to run",
)
parser.add_argument(
"--gpus",
default=0,
type=int,
help="The number of GPUs allocated for this, it is by default 0 meaning none",
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
return parser
def main():
parser = argparse.ArgumentParser()
add_generic_args(parser, os.getcwd())
parser = GLUETransformer.add_model_specific_args(parser, os.getcwd())
args = parser.parse_args()
# If output_dir not provided, a folder will be generated in pwd
if args.output_dir is None:
args.output_dir = os.path.join(
"./results",
f"{args.task}_{time.strftime('%Y%m%d_%H%M%S')}",
)
os.makedirs(args.output_dir)
model = GLUETransformer(args)
trainer = generic_train(model, args)
# Optionally, predict on dev set and write to output_dir
if args.do_predict:
checkpoints = sorted(glob.glob(os.path.join(args.output_dir, "checkpoint-epoch=*.ckpt"), recursive=True))
model = model.load_from_checkpoint(checkpoints[-1])
return trainer.test(model)
if __name__ == "__main__":
main()
| transformers-main | examples/legacy/pytorch-lightning/run_glue.py |
import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs,
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, mode):
if mode == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']."
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs,
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
# TODO: remove with PyTorch 1.6 since pl uses native amp
if args.fp16:
train_params["precision"] = 16
train_params["amp_level"] = args.fp16_opt_level
if args.gpus > 1:
train_params["distributed_backend"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
train_params["accelerator"] = extra_train_kwargs.get("accelerator", None)
train_params["profiler"] = extra_train_kwargs.get("profiler", None)
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks,
logger=logger,
checkpoint_callback=checkpoint_callback,
**train_params,
)
if args.do_train:
trainer.fit(model)
return trainer
| transformers-main | examples/legacy/pytorch-lightning/lightning_base.py |
# coding=utf-8
# Copyright 2021 HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import json
import logging
import os
import sys
from unittest.mock import patch
from transformers.testing_utils import TestCasePlus, get_gpu_count, slow
SRC_DIRS = [
os.path.join(os.path.dirname(__file__), dirname)
for dirname in [
"text-classification",
"language-modeling",
"summarization",
"token-classification",
"question-answering",
]
]
sys.path.extend(SRC_DIRS)
if SRC_DIRS is not None:
import run_clm_flax
import run_flax_glue
import run_flax_ner
import run_mlm_flax
import run_qa
import run_summarization_flax
import run_t5_mlm_flax
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
def get_setup_file():
parser = argparse.ArgumentParser()
parser.add_argument("-f")
args = parser.parse_args()
return args.f
def get_results(output_dir, split="eval"):
path = os.path.join(output_dir, f"{split}_results.json")
if os.path.exists(path):
with open(path, "r") as f:
return json.load(f)
raise ValueError(f"can't find {path}")
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
class ExamplesTests(TestCasePlus):
def test_run_glue(self):
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_glue.py
--model_name_or_path distilbert-base-uncased
--output_dir {tmp_dir}
--train_file ./tests/fixtures/tests_samples/MRPC/train.csv
--validation_file ./tests/fixtures/tests_samples/MRPC/dev.csv
--per_device_train_batch_size=2
--per_device_eval_batch_size=1
--learning_rate=1e-4
--eval_steps=2
--warmup_steps=2
--seed=42
--max_seq_length=128
""".split()
with patch.object(sys, "argv", testargs):
run_flax_glue.main()
result = get_results(tmp_dir)
self.assertGreaterEqual(result["eval_accuracy"], 0.75)
@slow
def test_run_clm(self):
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_clm_flax.py
--model_name_or_path distilgpt2
--train_file ./tests/fixtures/sample_text.txt
--validation_file ./tests/fixtures/sample_text.txt
--do_train
--do_eval
--block_size 128
--per_device_train_batch_size 4
--per_device_eval_batch_size 4
--num_train_epochs 2
--logging_steps 2 --eval_steps 2
--output_dir {tmp_dir}
--overwrite_output_dir
""".split()
with patch.object(sys, "argv", testargs):
run_clm_flax.main()
result = get_results(tmp_dir)
self.assertLess(result["eval_perplexity"], 100)
@slow
def test_run_summarization(self):
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_summarization.py
--model_name_or_path t5-small
--train_file tests/fixtures/tests_samples/xsum/sample.json
--validation_file tests/fixtures/tests_samples/xsum/sample.json
--test_file tests/fixtures/tests_samples/xsum/sample.json
--output_dir {tmp_dir}
--overwrite_output_dir
--num_train_epochs=3
--warmup_steps=8
--do_train
--do_eval
--do_predict
--learning_rate=2e-4
--per_device_train_batch_size=2
--per_device_eval_batch_size=1
--predict_with_generate
""".split()
with patch.object(sys, "argv", testargs):
run_summarization_flax.main()
result = get_results(tmp_dir, split="test")
self.assertGreaterEqual(result["test_rouge1"], 10)
self.assertGreaterEqual(result["test_rouge2"], 2)
self.assertGreaterEqual(result["test_rougeL"], 7)
self.assertGreaterEqual(result["test_rougeLsum"], 7)
@slow
def test_run_mlm(self):
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_mlm.py
--model_name_or_path distilroberta-base
--train_file ./tests/fixtures/sample_text.txt
--validation_file ./tests/fixtures/sample_text.txt
--output_dir {tmp_dir}
--overwrite_output_dir
--max_seq_length 128
--per_device_train_batch_size 4
--per_device_eval_batch_size 4
--logging_steps 2 --eval_steps 2
--do_train
--do_eval
--num_train_epochs=1
""".split()
with patch.object(sys, "argv", testargs):
run_mlm_flax.main()
result = get_results(tmp_dir)
self.assertLess(result["eval_perplexity"], 42)
@slow
def test_run_t5_mlm(self):
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_t5_mlm_flax.py
--model_name_or_path t5-small
--train_file ./tests/fixtures/sample_text.txt
--validation_file ./tests/fixtures/sample_text.txt
--do_train
--do_eval
--max_seq_length 128
--per_device_train_batch_size 4
--per_device_eval_batch_size 4
--num_train_epochs 2
--logging_steps 2 --eval_steps 2
--output_dir {tmp_dir}
--overwrite_output_dir
""".split()
with patch.object(sys, "argv", testargs):
run_t5_mlm_flax.main()
result = get_results(tmp_dir)
self.assertGreaterEqual(result["eval_accuracy"], 0.42)
@slow
def test_run_ner(self):
# with so little data distributed training needs more epochs to get the score on par with 0/1 gpu
epochs = 7 if get_gpu_count() > 1 else 2
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_flax_ner.py
--model_name_or_path bert-base-uncased
--train_file tests/fixtures/tests_samples/conll/sample.json
--validation_file tests/fixtures/tests_samples/conll/sample.json
--output_dir {tmp_dir}
--overwrite_output_dir
--do_train
--do_eval
--warmup_steps=2
--learning_rate=2e-4
--logging_steps 2 --eval_steps 2
--per_device_train_batch_size=2
--per_device_eval_batch_size=2
--num_train_epochs={epochs}
--seed 7
""".split()
with patch.object(sys, "argv", testargs):
run_flax_ner.main()
result = get_results(tmp_dir)
self.assertGreaterEqual(result["eval_accuracy"], 0.75)
self.assertGreaterEqual(result["eval_f1"], 0.3)
@slow
def test_run_qa(self):
tmp_dir = self.get_auto_remove_tmp_dir()
testargs = f"""
run_qa.py
--model_name_or_path bert-base-uncased
--version_2_with_negative
--train_file tests/fixtures/tests_samples/SQUAD/sample.json
--validation_file tests/fixtures/tests_samples/SQUAD/sample.json
--output_dir {tmp_dir}
--overwrite_output_dir
--num_train_epochs=3
--warmup_steps=2
--do_train
--do_eval
--logging_steps 2 --eval_steps 2
--learning_rate=2e-4
--per_device_train_batch_size=2
--per_device_eval_batch_size=1
""".split()
with patch.object(sys, "argv", testargs):
run_qa.main()
result = get_results(tmp_dir)
self.assertGreaterEqual(result["eval_f1"], 30)
self.assertGreaterEqual(result["eval_exact"], 30)
| transformers-main | examples/flax/test_flax_examples.py |
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# tests directory-specific settings - this file is run automatically
# by pytest before any tests are run
import sys
import warnings
from os.path import abspath, dirname, join
# allow having multiple repository checkouts and not needing to remember to rerun
# 'pip install -e .[dev]' when switching between checkouts and running tests.
git_repo_path = abspath(join(dirname(dirname(dirname(__file__))), "src"))
sys.path.insert(1, git_repo_path)
# silence FutureWarning warnings in tests since often we can't act on them until
# they become normal warnings - i.e. the tests still need to test the current functionality
warnings.simplefilter(action="ignore", category=FutureWarning)
def pytest_addoption(parser):
from transformers.testing_utils import pytest_addoption_shared
pytest_addoption_shared(parser)
def pytest_terminal_summary(terminalreporter):
from transformers.testing_utils import pytest_terminal_summary_main
make_reports = terminalreporter.config.getoption("--make-reports")
if make_reports:
pytest_terminal_summary_main(terminalreporter, id=make_reports)
| transformers-main | examples/flax/conftest.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for question answering.
"""
# You can also adapt this script on your own question answering task. Pointers for this are left as comments.
import json
import logging
import math
import os
import random
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from pathlib import Path
from typing import Any, Callable, Dict, Optional, Tuple
import datasets
import evaluate
import jax
import jax.numpy as jnp
import numpy as np
import optax
from datasets import load_dataset
from flax import struct, traverse_util
from flax.jax_utils import pad_shard_unpad, replicate, unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
from utils_qa import postprocess_qa_predictions
import transformers
from transformers import (
AutoConfig,
AutoTokenizer,
EvalPrediction,
FlaxAutoModelForQuestionAnswering,
HfArgumentParser,
PreTrainedTokenizerFast,
is_tensorboard_available,
)
from transformers.utils import check_min_version, send_example_telemetry
logger = logging.getLogger(__name__)
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.32.0.dev0")
Array = Any
Dataset = datasets.arrow_dataset.Dataset
PRNGKey = Any
# region Arguments
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
do_predict: bool = field(default=False, metadata={"help": "Whether to run predictions on the test set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Path to directory to store the pretrained models downloaded from huggingface.co"},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input test data file to evaluate the perplexity on (a text file)."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_seq_length: int = field(
default=384,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. If False, will pad the samples dynamically when"
" batching to the maximum length in the batch (which can be faster on GPU but will be slower on TPU)."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
version_2_with_negative: bool = field(
default=False, metadata={"help": "If true, some of the examples do not have an answer."}
)
null_score_diff_threshold: float = field(
default=0.0,
metadata={
"help": (
"The threshold used to select the null answer: if the best answer has a score that is less than "
"the score of the null answer minus this threshold, the null answer is selected for this example. "
"Only useful when `version_2_with_negative=True`."
)
},
)
doc_stride: int = field(
default=128,
metadata={"help": "When splitting up a long document into chunks, how much stride to take between chunks."},
)
n_best_size: int = field(
default=20,
metadata={"help": "The total number of n-best predictions to generate when looking for an answer."},
)
max_answer_length: int = field(
default=30,
metadata={
"help": (
"The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another."
)
},
)
def __post_init__(self):
if (
self.dataset_name is None
and self.train_file is None
and self.validation_file is None
and self.test_file is None
):
raise ValueError("Need either a dataset name or a training/validation file/test_file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if self.test_file is not None:
extension = self.test_file.split(".")[-1]
assert extension in ["csv", "json"], "`test_file` should be a csv or a json file."
# endregion
# region Create a train state
def create_train_state(
model: FlaxAutoModelForQuestionAnswering,
learning_rate_fn: Callable[[int], float],
num_labels: int,
training_args: TrainingArguments,
) -> train_state.TrainState:
"""Create initial training state."""
class TrainState(train_state.TrainState):
"""Train state with an Optax optimizer.
The two functions below differ depending on whether the task is classification
or regression.
Args:
logits_fn: Applied to last layer to obtain the logits.
loss_fn: Function to compute the loss.
"""
logits_fn: Callable = struct.field(pytree_node=False)
loss_fn: Callable = struct.field(pytree_node=False)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
tx = optax.adamw(
learning_rate=learning_rate_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
def cross_entropy_loss(logits, labels):
start_loss = optax.softmax_cross_entropy(logits[0], onehot(labels[0], num_classes=num_labels))
end_loss = optax.softmax_cross_entropy(logits[1], onehot(labels[1], num_classes=num_labels))
xentropy = (start_loss + end_loss) / 2.0
return jnp.mean(xentropy)
return TrainState.create(
apply_fn=model.__call__,
params=model.params,
tx=tx,
logits_fn=lambda logits: logits,
loss_fn=cross_entropy_loss,
)
# endregion
# region Create learning rate function
def create_learning_rate_fn(
train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
"""Returns a linear warmup, linear_decay learning rate function."""
steps_per_epoch = train_ds_size // train_batch_size
num_train_steps = steps_per_epoch * num_train_epochs
warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
decay_fn = optax.linear_schedule(
init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
)
schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
return schedule_fn
# endregion
# region train data iterator
def train_data_collator(rng: PRNGKey, dataset: Dataset, batch_size: int):
"""Returns shuffled batches of size `batch_size` from truncated `train dataset`, sharded over all local devices."""
steps_per_epoch = len(dataset) // batch_size
perms = jax.random.permutation(rng, len(dataset))
perms = perms[: steps_per_epoch * batch_size] # Skip incomplete batch.
perms = perms.reshape((steps_per_epoch, batch_size))
for perm in perms:
batch = dataset[perm]
batch = {k: np.array(v) for k, v in batch.items()}
batch = shard(batch)
yield batch
# endregion
# region eval data iterator
def eval_data_collator(dataset: Dataset, batch_size: int):
"""Returns batches of size `batch_size` from `eval dataset`. Sharding handled by `pad_shard_unpad` in the eval loop."""
batch_idx = np.arange(len(dataset))
steps_per_epoch = math.ceil(len(dataset) / batch_size)
batch_idx = np.array_split(batch_idx, steps_per_epoch)
for idx in batch_idx:
batch = dataset[idx]
batch = {k: np.array(v) for k, v in batch.items()}
yield batch
# endregion
def main():
# region Argument parsing
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_qa", model_args, data_args, framework="flax")
# endregion
# region Logging
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
if jax.process_index() == 0:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# endregion
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# region Load Data
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
# Loading the dataset from local csv or json file.
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
extension = data_args.train_file.split(".")[-1]
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.validation_file.split(".")[-1]
if data_args.test_file is not None:
data_files["test"] = data_args.test_file
extension = data_args.test_file.split(".")[-1]
raw_datasets = load_dataset(
extension,
data_files=data_files,
field="data",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# endregion
# region Load pretrained model and tokenizer
#
# Load pretrained model and tokenizer
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=True,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
# endregion
# region Tokenizer check: this script requires a fast tokenizer.
if not isinstance(tokenizer, PreTrainedTokenizerFast):
raise ValueError(
"This example script only works for models that have a fast tokenizer. Checkout the big table of models at"
" https://huggingface.co/transformers/index.html#supported-frameworks to find the model types that meet"
" this requirement"
)
# endregion
# region Preprocessing the datasets
# Preprocessing is slightly different for training and evaluation.
if training_args.do_train:
column_names = raw_datasets["train"].column_names
elif training_args.do_eval:
column_names = raw_datasets["validation"].column_names
else:
column_names = raw_datasets["test"].column_names
question_column_name = "question" if "question" in column_names else column_names[0]
context_column_name = "context" if "context" in column_names else column_names[1]
answer_column_name = "answers" if "answers" in column_names else column_names[2]
# Padding side determines if we do (question|context) or (context|question).
pad_on_right = tokenizer.padding_side == "right"
if data_args.max_seq_length > tokenizer.model_max_length:
logger.warning(
f"The max_seq_length passed ({data_args.max_seq_length}) is larger than the maximum length for the"
f"model ({tokenizer.model_max_length}). Using max_seq_length={tokenizer.model_max_length}."
)
max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
# Training preprocessing
def prepare_train_features(examples):
# Some of the questions have lots of whitespace on the left, which is not useful and will make the
# truncation of the context fail (the tokenized question will take a lots of space). So we remove that
# left whitespace
examples[question_column_name] = [q.lstrip() for q in examples[question_column_name]]
# Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results
# in one example possible giving several features when a context is long, each of those features having a
# context that overlaps a bit the context of the previous feature.
tokenized_examples = tokenizer(
examples[question_column_name if pad_on_right else context_column_name],
examples[context_column_name if pad_on_right else question_column_name],
truncation="only_second" if pad_on_right else "only_first",
max_length=max_seq_length,
stride=data_args.doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length",
)
# Since one example might give us several features if it has a long context, we need a map from a feature to
# its corresponding example. This key gives us just that.
sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping")
# The offset mappings will give us a map from token to character position in the original context. This will
# help us compute the start_positions and end_positions.
offset_mapping = tokenized_examples.pop("offset_mapping")
# Let's label those examples!
tokenized_examples["start_positions"] = []
tokenized_examples["end_positions"] = []
for i, offsets in enumerate(offset_mapping):
# We will label impossible answers with the index of the CLS token.
input_ids = tokenized_examples["input_ids"][i]
cls_index = input_ids.index(tokenizer.cls_token_id)
# Grab the sequence corresponding to that example (to know what is the context and what is the question).
sequence_ids = tokenized_examples.sequence_ids(i)
# One example can give several spans, this is the index of the example containing this span of text.
sample_index = sample_mapping[i]
answers = examples[answer_column_name][sample_index]
# If no answers are given, set the cls_index as answer.
if len(answers["answer_start"]) == 0:
tokenized_examples["start_positions"].append(cls_index)
tokenized_examples["end_positions"].append(cls_index)
else:
# Start/end character index of the answer in the text.
start_char = answers["answer_start"][0]
end_char = start_char + len(answers["text"][0])
# Start token index of the current span in the text.
token_start_index = 0
while sequence_ids[token_start_index] != (1 if pad_on_right else 0):
token_start_index += 1
# End token index of the current span in the text.
token_end_index = len(input_ids) - 1
while sequence_ids[token_end_index] != (1 if pad_on_right else 0):
token_end_index -= 1
# Detect if the answer is out of the span (in which case this feature is labeled with the CLS index).
if not (offsets[token_start_index][0] <= start_char and offsets[token_end_index][1] >= end_char):
tokenized_examples["start_positions"].append(cls_index)
tokenized_examples["end_positions"].append(cls_index)
else:
# Otherwise move the token_start_index and token_end_index to the two ends of the answer.
# Note: we could go after the last offset if the answer is the last word (edge case).
while token_start_index < len(offsets) and offsets[token_start_index][0] <= start_char:
token_start_index += 1
tokenized_examples["start_positions"].append(token_start_index - 1)
while offsets[token_end_index][1] >= end_char:
token_end_index -= 1
tokenized_examples["end_positions"].append(token_end_index + 1)
return tokenized_examples
processed_raw_datasets = {}
if training_args.do_train:
if "train" not in raw_datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = raw_datasets["train"]
if data_args.max_train_samples is not None:
# We will select sample from whole data if agument is specified
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
# Create train feature from dataset
train_dataset = train_dataset.map(
prepare_train_features,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if data_args.max_train_samples is not None:
# Number of samples might increase during Feature Creation, We select only specified max samples
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
processed_raw_datasets["train"] = train_dataset
# Validation preprocessing
def prepare_validation_features(examples):
# Some of the questions have lots of whitespace on the left, which is not useful and will make the
# truncation of the context fail (the tokenized question will take a lots of space). So we remove that
# left whitespace
examples[question_column_name] = [q.lstrip() for q in examples[question_column_name]]
# Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results
# in one example possible giving several features when a context is long, each of those features having a
# context that overlaps a bit the context of the previous feature.
tokenized_examples = tokenizer(
examples[question_column_name if pad_on_right else context_column_name],
examples[context_column_name if pad_on_right else question_column_name],
truncation="only_second" if pad_on_right else "only_first",
max_length=max_seq_length,
stride=data_args.doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length",
)
# Since one example might give us several features if it has a long context, we need a map from a feature to
# its corresponding example. This key gives us just that.
sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping")
# For evaluation, we will need to convert our predictions to substrings of the context, so we keep the
# corresponding example_id and we will store the offset mappings.
tokenized_examples["example_id"] = []
for i in range(len(tokenized_examples["input_ids"])):
# Grab the sequence corresponding to that example (to know what is the context and what is the question).
sequence_ids = tokenized_examples.sequence_ids(i)
context_index = 1 if pad_on_right else 0
# One example can give several spans, this is the index of the example containing this span of text.
sample_index = sample_mapping[i]
tokenized_examples["example_id"].append(examples["id"][sample_index])
# Set to None the offset_mapping that are not part of the context so it's easy to determine if a token
# position is part of the context or not.
tokenized_examples["offset_mapping"][i] = [
(o if sequence_ids[k] == context_index else None)
for k, o in enumerate(tokenized_examples["offset_mapping"][i])
]
return tokenized_examples
if training_args.do_eval:
if "validation" not in raw_datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_examples = raw_datasets["validation"]
if data_args.max_eval_samples is not None:
# We will select sample from whole data
max_eval_samples = min(len(eval_examples), data_args.max_eval_samples)
eval_examples = eval_examples.select(range(max_eval_samples))
# Validation Feature Creation
eval_dataset = eval_examples.map(
prepare_validation_features,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if data_args.max_eval_samples is not None:
# During Feature creation dataset samples might increase, we will select required samples again
max_eval_samples = min(len(eval_dataset), data_args.max_eval_samples)
eval_dataset = eval_dataset.select(range(max_eval_samples))
processed_raw_datasets["validation"] = eval_dataset
if training_args.do_predict:
if "test" not in raw_datasets:
raise ValueError("--do_predict requires a test dataset")
predict_examples = raw_datasets["test"]
if data_args.max_predict_samples is not None:
# We will select sample from whole data
predict_examples = predict_examples.select(range(data_args.max_predict_samples))
# Predict Feature Creation
predict_dataset = predict_examples.map(
prepare_validation_features,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if data_args.max_predict_samples is not None:
# During Feature creation dataset samples might increase, we will select required samples again
max_predict_samples = min(len(predict_dataset), data_args.max_predict_samples)
predict_dataset = predict_dataset.select(range(max_predict_samples))
processed_raw_datasets["test"] = predict_dataset
# endregion
# region Metrics and Post-processing:
def post_processing_function(examples, features, predictions, stage="eval"):
# Post-processing: we match the start logits and end logits to answers in the original context.
predictions = postprocess_qa_predictions(
examples=examples,
features=features,
predictions=predictions,
version_2_with_negative=data_args.version_2_with_negative,
n_best_size=data_args.n_best_size,
max_answer_length=data_args.max_answer_length,
null_score_diff_threshold=data_args.null_score_diff_threshold,
output_dir=training_args.output_dir,
prefix=stage,
)
# Format the result to the format the metric expects.
if data_args.version_2_with_negative:
formatted_predictions = [
{"id": k, "prediction_text": v, "no_answer_probability": 0.0} for k, v in predictions.items()
]
else:
formatted_predictions = [{"id": k, "prediction_text": v} for k, v in predictions.items()]
references = [{"id": ex["id"], "answers": ex[answer_column_name]} for ex in examples]
return EvalPrediction(predictions=formatted_predictions, label_ids=references)
metric = evaluate.load("squad_v2" if data_args.version_2_with_negative else "squad")
def compute_metrics(p: EvalPrediction):
return metric.compute(predictions=p.predictions, references=p.label_ids)
# Create and fill numpy array of size len_of_validation_data * max_length_of_output_tensor
def create_and_fill_np_array(start_or_end_logits, dataset, max_len):
"""
Create and fill numpy array of size len_of_validation_data * max_length_of_output_tensor
Args:
start_or_end_logits(:obj:`tensor`):
This is the output predictions of the model. We can only enter either start or end logits.
eval_dataset: Evaluation dataset
max_len(:obj:`int`):
The maximum length of the output tensor. ( See the model.eval() part for more details )
"""
step = 0
# create a numpy array and fill it with -100.
logits_concat = np.full((len(dataset), max_len), -100, dtype=np.float64)
# Now since we have create an array now we will populate it with the outputs of the model.
for i, output_logit in enumerate(start_or_end_logits): # populate columns
# We have to fill it such that we have to take the whole tensor and replace it on the newly created array
# And after every iteration we have to change the step
batch_size = output_logit.shape[0]
cols = output_logit.shape[1]
if step + batch_size < len(dataset):
logits_concat[step : step + batch_size, :cols] = output_logit
else:
logits_concat[step:, :cols] = output_logit[: len(dataset) - step]
step += batch_size
return logits_concat
# endregion
# region Training steps and logging init
train_dataset = processed_raw_datasets["train"]
eval_dataset = processed_raw_datasets["validation"]
# Log a few random samples from the training set:
for index in random.sample(range(len(train_dataset)), 3):
logger.info(f"Sample {index} of the training set: {train_dataset[index]}.")
# Define a summary writer
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(training_args.output_dir)
summary_writer.hparams({**training_args.to_dict(), **vars(model_args), **vars(data_args)})
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
num_epochs = int(training_args.num_train_epochs)
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
train_batch_size = int(training_args.per_device_train_batch_size) * jax.local_device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.local_device_count()
# endregion
# region Load model
model = FlaxAutoModelForQuestionAnswering.from_pretrained(
model_args.model_name_or_path,
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
)
learning_rate_fn = create_learning_rate_fn(
len(train_dataset),
train_batch_size,
training_args.num_train_epochs,
training_args.warmup_steps,
training_args.learning_rate,
)
state = create_train_state(model, learning_rate_fn, num_labels=max_seq_length, training_args=training_args)
# endregion
# region Define train step functions
def train_step(
state: train_state.TrainState, batch: Dict[str, Array], dropout_rng: PRNGKey
) -> Tuple[train_state.TrainState, float]:
"""Trains model with an optimizer (both in `state`) on `batch`, returning a pair `(new_state, loss)`."""
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
start_positions = batch.pop("start_positions")
end_positions = batch.pop("end_positions")
targets = (start_positions, end_positions)
def loss_fn(params):
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)
loss = state.loss_fn(logits, targets)
return loss
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad)
metrics = jax.lax.pmean({"loss": loss, "learning_rate": learning_rate_fn(state.step)}, axis_name="batch")
return new_state, metrics, new_dropout_rng
p_train_step = jax.pmap(train_step, axis_name="batch", donate_argnums=(0,))
# endregion
# region Define eval step functions
def eval_step(state, batch):
logits = state.apply_fn(**batch, params=state.params, train=False)
return state.logits_fn(logits)
p_eval_step = jax.pmap(eval_step, axis_name="batch")
# endregion
# region Define train and eval loop
logger.info(f"===== Starting training ({num_epochs} epochs) =====")
train_time = 0
# make sure weights are replicated on each device
state = replicate(state)
train_time = 0
step_per_epoch = len(train_dataset) // train_batch_size
total_steps = step_per_epoch * num_epochs
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
for epoch in epochs:
train_start = time.time()
train_metrics = []
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# train
for step, batch in enumerate(
tqdm(
train_data_collator(input_rng, train_dataset, train_batch_size),
total=step_per_epoch,
desc="Training...",
position=1,
),
1,
):
state, train_metric, dropout_rngs = p_train_step(state, batch, dropout_rngs)
train_metrics.append(train_metric)
cur_step = epoch * step_per_epoch + step
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step}/{total_steps} | Training Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
train_metrics = []
if (
training_args.do_eval
and (cur_step % training_args.eval_steps == 0 or cur_step % step_per_epoch == 0)
and cur_step > 0
):
eval_metrics = {}
all_start_logits = []
all_end_logits = []
# evaluate
for batch in tqdm(
eval_data_collator(eval_dataset, eval_batch_size),
total=math.ceil(len(eval_dataset) / eval_batch_size),
desc="Evaluating ...",
position=2,
):
_ = batch.pop("example_id")
_ = batch.pop("offset_mapping")
predictions = pad_shard_unpad(p_eval_step)(
state, batch, min_device_batch=per_device_eval_batch_size
)
start_logits = np.array(predictions[0])
end_logits = np.array(predictions[1])
all_start_logits.append(start_logits)
all_end_logits.append(end_logits)
max_len = max([x.shape[1] for x in all_start_logits]) # Get the max_length of the tensor
# concatenate the numpy array
start_logits_concat = create_and_fill_np_array(all_start_logits, eval_dataset, max_len)
end_logits_concat = create_and_fill_np_array(all_end_logits, eval_dataset, max_len)
# delete the list of numpy arrays
del all_start_logits
del all_end_logits
outputs_numpy = (start_logits_concat, end_logits_concat)
prediction = post_processing_function(eval_examples, eval_dataset, outputs_numpy)
eval_metrics = compute_metrics(prediction)
logger.info(f"Step... ({cur_step}/{total_steps} | Evaluation metrics: {eval_metrics})")
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metrics, cur_step)
if (cur_step % training_args.save_steps == 0 and cur_step > 0) or (cur_step == total_steps):
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(unreplicate(state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
epochs.desc = f"Epoch ... {epoch + 1}/{num_epochs}"
# endregion
# Eval after training
if training_args.do_eval:
eval_metrics = {}
all_start_logits = []
all_end_logits = []
eval_loader = eval_data_collator(eval_dataset, eval_batch_size)
for batch in tqdm(
eval_loader, total=math.ceil(len(eval_dataset) / eval_batch_size), desc="Evaluating ...", position=2
):
_ = batch.pop("example_id")
_ = batch.pop("offset_mapping")
predictions = pad_shard_unpad(p_eval_step)(state, batch, min_device_batch=per_device_eval_batch_size)
start_logits = np.array(predictions[0])
end_logits = np.array(predictions[1])
all_start_logits.append(start_logits)
all_end_logits.append(end_logits)
max_len = max([x.shape[1] for x in all_start_logits]) # Get the max_length of the tensor
# concatenate the numpy array
start_logits_concat = create_and_fill_np_array(all_start_logits, eval_dataset, max_len)
end_logits_concat = create_and_fill_np_array(all_end_logits, eval_dataset, max_len)
# delete the list of numpy arrays
del all_start_logits
del all_end_logits
outputs_numpy = (start_logits_concat, end_logits_concat)
prediction = post_processing_function(eval_examples, eval_dataset, outputs_numpy)
eval_metrics = compute_metrics(prediction)
if jax.process_index() == 0:
eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/question-answering/run_qa.py |
# coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Post-processing utilities for question answering.
"""
import collections
import json
import logging
import os
from typing import Optional, Tuple
import numpy as np
from tqdm.auto import tqdm
logger = logging.getLogger(__name__)
def postprocess_qa_predictions(
examples,
features,
predictions: Tuple[np.ndarray, np.ndarray],
version_2_with_negative: bool = False,
n_best_size: int = 20,
max_answer_length: int = 30,
null_score_diff_threshold: float = 0.0,
output_dir: Optional[str] = None,
prefix: Optional[str] = None,
log_level: Optional[int] = logging.WARNING,
):
"""
Post-processes the predictions of a question-answering model to convert them to answers that are substrings of the
original contexts. This is the base postprocessing functions for models that only return start and end logits.
Args:
examples: The non-preprocessed dataset (see the main script for more information).
features: The processed dataset (see the main script for more information).
predictions (:obj:`Tuple[np.ndarray, np.ndarray]`):
The predictions of the model: two arrays containing the start logits and the end logits respectively. Its
first dimension must match the number of elements of :obj:`features`.
version_2_with_negative (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the underlying dataset contains examples with no answers.
n_best_size (:obj:`int`, `optional`, defaults to 20):
The total number of n-best predictions to generate when looking for an answer.
max_answer_length (:obj:`int`, `optional`, defaults to 30):
The maximum length of an answer that can be generated. This is needed because the start and end predictions
are not conditioned on one another.
null_score_diff_threshold (:obj:`float`, `optional`, defaults to 0):
The threshold used to select the null answer: if the best answer has a score that is less than the score of
the null answer minus this threshold, the null answer is selected for this example (note that the score of
the null answer for an example giving several features is the minimum of the scores for the null answer on
each feature: all features must be aligned on the fact they `want` to predict a null answer).
Only useful when :obj:`version_2_with_negative` is :obj:`True`.
output_dir (:obj:`str`, `optional`):
If provided, the dictionaries of predictions, n_best predictions (with their scores and logits) and, if
:obj:`version_2_with_negative=True`, the dictionary of the scores differences between best and null
answers, are saved in `output_dir`.
prefix (:obj:`str`, `optional`):
If provided, the dictionaries mentioned above are saved with `prefix` added to their names.
log_level (:obj:`int`, `optional`, defaults to ``logging.WARNING``):
``logging`` log level (e.g., ``logging.WARNING``)
"""
if len(predictions) != 2:
raise ValueError("`predictions` should be a tuple with two elements (start_logits, end_logits).")
all_start_logits, all_end_logits = predictions
if len(predictions[0]) != len(features):
raise ValueError(f"Got {len(predictions[0])} predictions and {len(features)} features.")
# Build a map example to its corresponding features.
example_id_to_index = {k: i for i, k in enumerate(examples["id"])}
features_per_example = collections.defaultdict(list)
for i, feature in enumerate(features):
features_per_example[example_id_to_index[feature["example_id"]]].append(i)
# The dictionaries we have to fill.
all_predictions = collections.OrderedDict()
all_nbest_json = collections.OrderedDict()
if version_2_with_negative:
scores_diff_json = collections.OrderedDict()
# Logging.
logger.setLevel(log_level)
logger.info(f"Post-processing {len(examples)} example predictions split into {len(features)} features.")
# Let's loop over all the examples!
for example_index, example in enumerate(tqdm(examples)):
# Those are the indices of the features associated to the current example.
feature_indices = features_per_example[example_index]
min_null_prediction = None
prelim_predictions = []
# Looping through all the features associated to the current example.
for feature_index in feature_indices:
# We grab the predictions of the model for this feature.
start_logits = all_start_logits[feature_index]
end_logits = all_end_logits[feature_index]
# This is what will allow us to map some the positions in our logits to span of texts in the original
# context.
offset_mapping = features[feature_index]["offset_mapping"]
# Optional `token_is_max_context`, if provided we will remove answers that do not have the maximum context
# available in the current feature.
token_is_max_context = features[feature_index].get("token_is_max_context", None)
# Update minimum null prediction.
feature_null_score = start_logits[0] + end_logits[0]
if min_null_prediction is None or min_null_prediction["score"] > feature_null_score:
min_null_prediction = {
"offsets": (0, 0),
"score": feature_null_score,
"start_logit": start_logits[0],
"end_logit": end_logits[0],
}
# Go through all possibilities for the `n_best_size` greater start and end logits.
start_indexes = np.argsort(start_logits)[-1 : -n_best_size - 1 : -1].tolist()
end_indexes = np.argsort(end_logits)[-1 : -n_best_size - 1 : -1].tolist()
for start_index in start_indexes:
for end_index in end_indexes:
# Don't consider out-of-scope answers, either because the indices are out of bounds or correspond
# to part of the input_ids that are not in the context.
if (
start_index >= len(offset_mapping)
or end_index >= len(offset_mapping)
or offset_mapping[start_index] is None
or len(offset_mapping[start_index]) < 2
or offset_mapping[end_index] is None
or len(offset_mapping[end_index]) < 2
):
continue
# Don't consider answers with a length that is either < 0 or > max_answer_length.
if end_index < start_index or end_index - start_index + 1 > max_answer_length:
continue
# Don't consider answer that don't have the maximum context available (if such information is
# provided).
if token_is_max_context is not None and not token_is_max_context.get(str(start_index), False):
continue
prelim_predictions.append(
{
"offsets": (offset_mapping[start_index][0], offset_mapping[end_index][1]),
"score": start_logits[start_index] + end_logits[end_index],
"start_logit": start_logits[start_index],
"end_logit": end_logits[end_index],
}
)
if version_2_with_negative and min_null_prediction is not None:
# Add the minimum null prediction
prelim_predictions.append(min_null_prediction)
null_score = min_null_prediction["score"]
# Only keep the best `n_best_size` predictions.
predictions = sorted(prelim_predictions, key=lambda x: x["score"], reverse=True)[:n_best_size]
# Add back the minimum null prediction if it was removed because of its low score.
if (
version_2_with_negative
and min_null_prediction is not None
and not any(p["offsets"] == (0, 0) for p in predictions)
):
predictions.append(min_null_prediction)
# Use the offsets to gather the answer text in the original context.
context = example["context"]
for pred in predictions:
offsets = pred.pop("offsets")
pred["text"] = context[offsets[0] : offsets[1]]
# In the very rare edge case we have not a single non-null prediction, we create a fake prediction to avoid
# failure.
if len(predictions) == 0 or (len(predictions) == 1 and predictions[0]["text"] == ""):
predictions.insert(0, {"text": "empty", "start_logit": 0.0, "end_logit": 0.0, "score": 0.0})
# Compute the softmax of all scores (we do it with numpy to stay independent from torch/tf in this file, using
# the LogSumExp trick).
scores = np.array([pred.pop("score") for pred in predictions])
exp_scores = np.exp(scores - np.max(scores))
probs = exp_scores / exp_scores.sum()
# Include the probabilities in our predictions.
for prob, pred in zip(probs, predictions):
pred["probability"] = prob
# Pick the best prediction. If the null answer is not possible, this is easy.
if not version_2_with_negative:
all_predictions[example["id"]] = predictions[0]["text"]
else:
# Otherwise we first need to find the best non-empty prediction.
i = 0
while predictions[i]["text"] == "":
i += 1
best_non_null_pred = predictions[i]
# Then we compare to the null prediction using the threshold.
score_diff = null_score - best_non_null_pred["start_logit"] - best_non_null_pred["end_logit"]
scores_diff_json[example["id"]] = float(score_diff) # To be JSON-serializable.
if score_diff > null_score_diff_threshold:
all_predictions[example["id"]] = ""
else:
all_predictions[example["id"]] = best_non_null_pred["text"]
# Make `predictions` JSON-serializable by casting np.float back to float.
all_nbest_json[example["id"]] = [
{k: (float(v) if isinstance(v, (np.float16, np.float32, np.float64)) else v) for k, v in pred.items()}
for pred in predictions
]
# If we have an output_dir, let's save all those dicts.
if output_dir is not None:
if not os.path.isdir(output_dir):
raise EnvironmentError(f"{output_dir} is not a directory.")
prediction_file = os.path.join(
output_dir, "predictions.json" if prefix is None else f"{prefix}_predictions.json"
)
nbest_file = os.path.join(
output_dir, "nbest_predictions.json" if prefix is None else f"{prefix}_nbest_predictions.json"
)
if version_2_with_negative:
null_odds_file = os.path.join(
output_dir, "null_odds.json" if prefix is None else f"{prefix}_null_odds.json"
)
logger.info(f"Saving predictions to {prediction_file}.")
with open(prediction_file, "w") as writer:
writer.write(json.dumps(all_predictions, indent=4) + "\n")
logger.info(f"Saving nbest_preds to {nbest_file}.")
with open(nbest_file, "w") as writer:
writer.write(json.dumps(all_nbest_json, indent=4) + "\n")
if version_2_with_negative:
logger.info(f"Saving null_odds to {null_odds_file}.")
with open(null_odds_file, "w") as writer:
writer.write(json.dumps(scores_diff_json, indent=4) + "\n")
return all_predictions
def postprocess_qa_predictions_with_beam_search(
examples,
features,
predictions: Tuple[np.ndarray, np.ndarray],
version_2_with_negative: bool = False,
n_best_size: int = 20,
max_answer_length: int = 30,
start_n_top: int = 5,
end_n_top: int = 5,
output_dir: Optional[str] = None,
prefix: Optional[str] = None,
log_level: Optional[int] = logging.WARNING,
):
"""
Post-processes the predictions of a question-answering model with beam search to convert them to answers that are substrings of the
original contexts. This is the postprocessing functions for models that return start and end logits, indices, as well as
cls token predictions.
Args:
examples: The non-preprocessed dataset (see the main script for more information).
features: The processed dataset (see the main script for more information).
predictions (:obj:`Tuple[np.ndarray, np.ndarray]`):
The predictions of the model: two arrays containing the start logits and the end logits respectively. Its
first dimension must match the number of elements of :obj:`features`.
version_2_with_negative (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the underlying dataset contains examples with no answers.
n_best_size (:obj:`int`, `optional`, defaults to 20):
The total number of n-best predictions to generate when looking for an answer.
max_answer_length (:obj:`int`, `optional`, defaults to 30):
The maximum length of an answer that can be generated. This is needed because the start and end predictions
are not conditioned on one another.
start_n_top (:obj:`int`, `optional`, defaults to 5):
The number of top start logits too keep when searching for the :obj:`n_best_size` predictions.
end_n_top (:obj:`int`, `optional`, defaults to 5):
The number of top end logits too keep when searching for the :obj:`n_best_size` predictions.
output_dir (:obj:`str`, `optional`):
If provided, the dictionaries of predictions, n_best predictions (with their scores and logits) and, if
:obj:`version_2_with_negative=True`, the dictionary of the scores differences between best and null
answers, are saved in `output_dir`.
prefix (:obj:`str`, `optional`):
If provided, the dictionaries mentioned above are saved with `prefix` added to their names.
log_level (:obj:`int`, `optional`, defaults to ``logging.WARNING``):
``logging`` log level (e.g., ``logging.WARNING``)
"""
if len(predictions) != 5:
raise ValueError("`predictions` should be a tuple with five elements.")
start_top_log_probs, start_top_index, end_top_log_probs, end_top_index, cls_logits = predictions
if len(predictions[0]) != len(features):
raise ValueError(f"Got {len(predictions[0])} predictions and {len(features)} features.")
# Build a map example to its corresponding features.
example_id_to_index = {k: i for i, k in enumerate(examples["id"])}
features_per_example = collections.defaultdict(list)
for i, feature in enumerate(features):
features_per_example[example_id_to_index[feature["example_id"]]].append(i)
# The dictionaries we have to fill.
all_predictions = collections.OrderedDict()
all_nbest_json = collections.OrderedDict()
scores_diff_json = collections.OrderedDict() if version_2_with_negative else None
# Logging.
logger.setLevel(log_level)
logger.info(f"Post-processing {len(examples)} example predictions split into {len(features)} features.")
# Let's loop over all the examples!
for example_index, example in enumerate(tqdm(examples)):
# Those are the indices of the features associated to the current example.
feature_indices = features_per_example[example_index]
min_null_score = None
prelim_predictions = []
# Looping through all the features associated to the current example.
for feature_index in feature_indices:
# We grab the predictions of the model for this feature.
start_log_prob = start_top_log_probs[feature_index]
start_indexes = start_top_index[feature_index]
end_log_prob = end_top_log_probs[feature_index]
end_indexes = end_top_index[feature_index]
feature_null_score = cls_logits[feature_index]
# This is what will allow us to map some the positions in our logits to span of texts in the original
# context.
offset_mapping = features[feature_index]["offset_mapping"]
# Optional `token_is_max_context`, if provided we will remove answers that do not have the maximum context
# available in the current feature.
token_is_max_context = features[feature_index].get("token_is_max_context", None)
# Update minimum null prediction
if min_null_score is None or feature_null_score < min_null_score:
min_null_score = feature_null_score
# Go through all possibilities for the `n_start_top`/`n_end_top` greater start and end logits.
for i in range(start_n_top):
for j in range(end_n_top):
start_index = int(start_indexes[i])
j_index = i * end_n_top + j
end_index = int(end_indexes[j_index])
# Don't consider out-of-scope answers (last part of the test should be unnecessary because of the
# p_mask but let's not take any risk)
if (
start_index >= len(offset_mapping)
or end_index >= len(offset_mapping)
or offset_mapping[start_index] is None
or len(offset_mapping[start_index]) < 2
or offset_mapping[end_index] is None
or len(offset_mapping[end_index]) < 2
):
continue
# Don't consider answers with a length negative or > max_answer_length.
if end_index < start_index or end_index - start_index + 1 > max_answer_length:
continue
# Don't consider answer that don't have the maximum context available (if such information is
# provided).
if token_is_max_context is not None and not token_is_max_context.get(str(start_index), False):
continue
prelim_predictions.append(
{
"offsets": (offset_mapping[start_index][0], offset_mapping[end_index][1]),
"score": start_log_prob[i] + end_log_prob[j_index],
"start_log_prob": start_log_prob[i],
"end_log_prob": end_log_prob[j_index],
}
)
# Only keep the best `n_best_size` predictions.
predictions = sorted(prelim_predictions, key=lambda x: x["score"], reverse=True)[:n_best_size]
# Use the offsets to gather the answer text in the original context.
context = example["context"]
for pred in predictions:
offsets = pred.pop("offsets")
pred["text"] = context[offsets[0] : offsets[1]]
# In the very rare edge case we have not a single non-null prediction, we create a fake prediction to avoid
# failure.
if len(predictions) == 0:
# Without predictions min_null_score is going to be None and None will cause an exception later
min_null_score = -2e-6
predictions.insert(0, {"text": "", "start_logit": -1e-6, "end_logit": -1e-6, "score": min_null_score})
# Compute the softmax of all scores (we do it with numpy to stay independent from torch/tf in this file, using
# the LogSumExp trick).
scores = np.array([pred.pop("score") for pred in predictions])
exp_scores = np.exp(scores - np.max(scores))
probs = exp_scores / exp_scores.sum()
# Include the probabilities in our predictions.
for prob, pred in zip(probs, predictions):
pred["probability"] = prob
# Pick the best prediction and set the probability for the null answer.
all_predictions[example["id"]] = predictions[0]["text"]
if version_2_with_negative:
scores_diff_json[example["id"]] = float(min_null_score)
# Make `predictions` JSON-serializable by casting np.float back to float.
all_nbest_json[example["id"]] = [
{k: (float(v) if isinstance(v, (np.float16, np.float32, np.float64)) else v) for k, v in pred.items()}
for pred in predictions
]
# If we have an output_dir, let's save all those dicts.
if output_dir is not None:
if not os.path.isdir(output_dir):
raise EnvironmentError(f"{output_dir} is not a directory.")
prediction_file = os.path.join(
output_dir, "predictions.json" if prefix is None else f"{prefix}_predictions.json"
)
nbest_file = os.path.join(
output_dir, "nbest_predictions.json" if prefix is None else f"{prefix}_nbest_predictions.json"
)
if version_2_with_negative:
null_odds_file = os.path.join(
output_dir, "null_odds.json" if prefix is None else f"{prefix}_null_odds.json"
)
logger.info(f"Saving predictions to {prediction_file}.")
with open(prediction_file, "w") as writer:
writer.write(json.dumps(all_predictions, indent=4) + "\n")
logger.info(f"Saving nbest_preds to {nbest_file}.")
with open(nbest_file, "w") as writer:
writer.write(json.dumps(all_nbest_json, indent=4) + "\n")
if version_2_with_negative:
logger.info(f"Saving null_odds to {null_odds_file}.")
with open(null_odds_file, "w") as writer:
writer.write(json.dumps(scores_diff_json, indent=4) + "\n")
return all_predictions, scores_diff_json
| transformers-main | examples/flax/question-answering/utils_qa.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for summarization.
"""
# You can also adapt this script on your own sequence to sequence task. Pointers for this are left as comments.
import json
import logging
import math
import os
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from functools import partial
from pathlib import Path
from typing import Callable, Optional
import datasets
import evaluate
import jax
import jax.numpy as jnp
import nltk # Here to have a nice missing dependency error message early on
import numpy as np
import optax
from datasets import Dataset, load_dataset
from filelock import FileLock
from flax import jax_utils, traverse_util
from flax.jax_utils import pad_shard_unpad, unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard, shard_prng_key
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
import transformers
from transformers import (
CONFIG_MAPPING,
FLAX_MODEL_FOR_SEQ_TO_SEQ_CAUSAL_LM_MAPPING,
AutoConfig,
AutoTokenizer,
FlaxAutoModelForSeq2SeqLM,
HfArgumentParser,
is_tensorboard_available,
)
from transformers.utils import is_offline_mode, send_example_telemetry
logger = logging.getLogger(__name__)
try:
nltk.data.find("tokenizers/punkt")
except (LookupError, OSError):
if is_offline_mode():
raise LookupError(
"Offline mode: run this script without TRANSFORMERS_OFFLINE first to download nltk data files"
)
with FileLock(".lock") as lock:
nltk.download("punkt", quiet=True)
MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_SEQ_TO_SEQ_CAUSAL_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
do_predict: bool = field(default=False, metadata={"help": "Whether to run predictions on the test set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
label_smoothing_factor: float = field(
default=0.0, metadata={"help": "The label smoothing epsilon to apply (zero means no label smoothing)."}
)
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
gradient_checkpointing: bool = field(
default=False,
metadata={
"help": "If True, use gradient checkpointing to save memory at the expense of slower backward pass."
},
)
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
text_column: Optional[str] = field(
default=None,
metadata={"help": "The name of the column in the datasets containing the full texts (for summarization)."},
)
summary_column: Optional[str] = field(
default=None,
metadata={"help": "The name of the column in the datasets containing the summaries (for summarization)."},
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input predict data file to do prediction on (a text file)."},
)
max_source_length: Optional[int] = field(
default=1024,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_target_length: Optional[int] = field(
default=128,
metadata={
"help": (
"The maximum total sequence length for target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
val_max_target_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total sequence length for validation target text after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded. Will default to `max_target_length`."
"This argument is also used to override the `max_length` param of `model.generate`, which is used "
"during evaluation."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
source_prefix: Optional[str] = field(
default=None, metadata={"help": "A prefix to add before every source text (useful for T5 models)."}
)
predict_with_generate: bool = field(
default=False, metadata={"help": "Whether to use generate to calculate generative metrics (ROUGE, BLEU)."}
)
num_beams: Optional[int] = field(
default=None,
metadata={
"help": (
"Number of beams to use for evaluation. This argument will be passed to `model.generate`, "
"which is used during evaluation."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
def __post_init__(self):
if (
self.dataset_name is None
and self.train_file is None
and self.validation_file is None
and self.test_file is None
):
raise ValueError("Need either a dataset name or a training, validation, or test file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if self.test_file is not None:
extension = self.test_file.split(".")[-1]
assert extension in ["csv", "json"], "`test_file` should be a csv or a json file."
if self.val_max_target_length is None:
self.val_max_target_length = self.max_target_length
summarization_name_mapping = {
"amazon_reviews_multi": ("review_body", "review_title"),
"big_patent": ("description", "abstract"),
"cnn_dailymail": ("article", "highlights"),
"orange_sum": ("text", "summary"),
"pn_summary": ("article", "summary"),
"psc": ("extract_text", "summary_text"),
"samsum": ("dialogue", "summary"),
"thaisum": ("body", "summary"),
"xglue": ("news_body", "news_title"),
"xsum": ("document", "summary"),
"wiki_summary": ("article", "highlights"),
}
class TrainState(train_state.TrainState):
dropout_rng: jnp.ndarray
def replicate(self):
return jax_utils.replicate(self).replace(dropout_rng=shard_prng_key(self.dropout_rng))
def data_loader(rng: jax.random.PRNGKey, dataset: Dataset, batch_size: int, shuffle: bool = False, drop_last=True):
"""
Returns batches of size `batch_size` from `dataset`. If `drop_last` is set to `False`, the final batch may be incomplete,
and range in size from 1 to `batch_size`. Shuffle batches if `shuffle` is `True`.
"""
if shuffle:
batch_idx = jax.random.permutation(rng, len(dataset))
batch_idx = np.asarray(batch_idx)
else:
batch_idx = np.arange(len(dataset))
if drop_last:
steps_per_epoch = len(dataset) // batch_size
batch_idx = batch_idx[: steps_per_epoch * batch_size] # Skip incomplete batch.
batch_idx = batch_idx.reshape((steps_per_epoch, batch_size))
else:
steps_per_epoch = math.ceil(len(dataset) / batch_size)
batch_idx = np.array_split(batch_idx, steps_per_epoch)
for idx in batch_idx:
batch = dataset[idx]
batch = {k: np.array(v) for k, v in batch.items()}
yield batch
def write_metric(summary_writer, train_metrics, eval_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def create_learning_rate_fn(
train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
"""Returns a linear warmup, linear_decay learning rate function."""
steps_per_epoch = train_ds_size // train_batch_size
num_train_steps = steps_per_epoch * num_train_epochs
warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
decay_fn = optax.linear_schedule(
init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
)
schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
return schedule_fn
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_summarization", model_args, data_args, framework="flax")
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
if jax.process_index() == 0:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info(f"Training/evaluation parameters {training_args}")
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files this script will use the first column for the full texts and the second column for the
# summaries (unless you specify column names for this with the `text_column` and `summary_column` arguments).
#
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
dataset = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
keep_in_memory=False,
token=model_args.token,
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
extension = data_args.train_file.split(".")[-1]
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.validation_file.split(".")[-1]
if data_args.test_file is not None:
data_files["test"] = data_args.test_file
extension = data_args.test_file.split(".")[-1]
dataset = load_dataset(
extension,
data_files=data_files,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
if model_args.config_name:
config = AutoConfig.from_pretrained(
model_args.config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if model_args.model_name_or_path:
model = FlaxAutoModelForSeq2SeqLM.from_pretrained(
model_args.model_name_or_path,
config=config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
model = FlaxAutoModelForSeq2SeqLM.from_config(
config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
trust_remote_code=model_args.trust_remote_code,
)
if training_args.gradient_checkpointing:
model.enable_gradient_checkpointing()
if model.config.decoder_start_token_id is None:
raise ValueError("Make sure that `config.decoder_start_token_id` is correctly defined")
prefix = data_args.source_prefix if data_args.source_prefix is not None else ""
# Preprocessing the datasets.
# We need to tokenize inputs and targets.
if training_args.do_train:
if "train" not in dataset:
raise ValueError("--do_train requires a train dataset")
column_names = dataset["train"].column_names
elif training_args.do_eval:
if "validation" not in dataset:
raise ValueError("--do_eval requires a validation dataset")
column_names = dataset["validation"].column_names
elif training_args.do_predict:
if "test" not in dataset:
raise ValueError("--do_predict requires a test dataset")
column_names = dataset["test"].column_names
else:
logger.info("There is nothing to do. Please pass `do_train`, `do_eval` and/or `do_predict`.")
return
# Get the column names for input/target.
dataset_columns = summarization_name_mapping.get(data_args.dataset_name, None)
if data_args.text_column is None:
text_column = dataset_columns[0] if dataset_columns is not None else column_names[0]
else:
text_column = data_args.text_column
if text_column not in column_names:
raise ValueError(
f"--text_column' value '{data_args.text_column}' needs to be one of: {', '.join(column_names)}"
)
if data_args.summary_column is None:
summary_column = dataset_columns[1] if dataset_columns is not None else column_names[1]
else:
summary_column = data_args.summary_column
if summary_column not in column_names:
raise ValueError(
f"--summary_column' value '{data_args.summary_column}' needs to be one of: {', '.join(column_names)}"
)
# Temporarily set max_target_length for training.
max_target_length = data_args.max_target_length
# In Flax, for seq2seq models we need to pass `decoder_input_ids`
# as the Flax models don't accept `labels`, we need to prepare the decoder_input_ids here
# for that dynamically import the `shift_tokens_right` function from the model file
model_module = __import__(model.__module__, fromlist=["shift_tokens_tight"])
shift_tokens_right_fn = getattr(model_module, "shift_tokens_right")
# Setting padding="max_length" as we need fixed length inputs for jitted functions
def preprocess_function(examples):
inputs = examples[text_column]
targets = examples[summary_column]
inputs = [prefix + inp for inp in inputs]
model_inputs = tokenizer(
inputs, max_length=data_args.max_source_length, padding="max_length", truncation=True, return_tensors="np"
)
# Setup the tokenizer for targets
labels = tokenizer(
text_target=targets,
max_length=max_target_length,
padding="max_length",
truncation=True,
return_tensors="np",
)
model_inputs["labels"] = labels["input_ids"]
decoder_input_ids = shift_tokens_right_fn(
labels["input_ids"], config.pad_token_id, config.decoder_start_token_id
)
model_inputs["decoder_input_ids"] = np.asarray(decoder_input_ids)
# We need decoder_attention_mask so we can ignore pad tokens from loss
model_inputs["decoder_attention_mask"] = labels["attention_mask"]
return model_inputs
if training_args.do_train:
train_dataset = dataset["train"]
if data_args.max_train_samples is not None:
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
train_dataset = train_dataset.map(
preprocess_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on train dataset",
)
if training_args.do_eval:
max_target_length = data_args.val_max_target_length
eval_dataset = dataset["validation"]
if data_args.max_eval_samples is not None:
max_eval_samples = min(len(eval_dataset), data_args.max_eval_samples)
eval_dataset = eval_dataset.select(range(max_eval_samples))
eval_dataset = eval_dataset.map(
preprocess_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on validation dataset",
)
if training_args.do_predict:
max_target_length = data_args.val_max_target_length
predict_dataset = dataset["test"]
if data_args.max_predict_samples is not None:
max_predict_samples = min(len(predict_dataset), data_args.max_predict_samples)
predict_dataset = predict_dataset.select(range(max_predict_samples))
predict_dataset = predict_dataset.map(
preprocess_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on prediction dataset",
)
# Metric
metric = evaluate.load("rouge")
def postprocess_text(preds, labels):
preds = [pred.strip() for pred in preds]
labels = [label.strip() for label in labels]
# rougeLSum expects newline after each sentence
preds = ["\n".join(nltk.sent_tokenize(pred)) for pred in preds]
labels = ["\n".join(nltk.sent_tokenize(label)) for label in labels]
return preds, labels
def compute_metrics(preds, labels):
decoded_preds = tokenizer.batch_decode(preds, skip_special_tokens=True)
decoded_labels = tokenizer.batch_decode(labels, skip_special_tokens=True)
# Some simple post-processing
decoded_preds, decoded_labels = postprocess_text(decoded_preds, decoded_labels)
result = metric.compute(predictions=decoded_preds, references=decoded_labels, use_stemmer=True)
result = {k: round(v * 100, 4) for k, v in result.items()}
prediction_lens = [np.count_nonzero(pred != tokenizer.pad_token_id) for pred in preds]
result["gen_len"] = np.mean(prediction_lens)
return result
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
rng, dropout_rng = jax.random.split(rng)
# Store some constant
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
steps_per_epoch = len(train_dataset) // train_batch_size
total_train_steps = steps_per_epoch * num_epochs
# Create learning rate schedule
linear_decay_lr_schedule_fn = create_learning_rate_fn(
len(train_dataset),
train_batch_size,
training_args.num_train_epochs,
training_args.warmup_steps,
training_args.learning_rate,
)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
# create adam optimizer
adamw = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
# Setup train state
state = TrainState.create(apply_fn=model.__call__, params=model.params, tx=adamw, dropout_rng=dropout_rng)
# label smoothed cross entropy
def loss_fn(logits, labels, padding_mask, label_smoothing_factor=0.0):
"""
The label smoothing implementation is adapted from Flax's official example:
https://github.com/google/flax/blob/87a211135c6a377c8f29048a1cac3840e38b9da4/examples/wmt/train.py#L104
"""
vocab_size = logits.shape[-1]
confidence = 1.0 - label_smoothing_factor
low_confidence = (1.0 - confidence) / (vocab_size - 1)
normalizing_constant = -(
confidence * jnp.log(confidence) + (vocab_size - 1) * low_confidence * jnp.log(low_confidence + 1e-20)
)
soft_labels = onehot(labels, vocab_size, on_value=confidence, off_value=low_confidence)
loss = optax.softmax_cross_entropy(logits, soft_labels)
loss = loss - normalizing_constant
# ignore padded tokens from loss
loss = loss * padding_mask
loss = loss.sum()
num_labels = padding_mask.sum()
return loss, num_labels
# Define gradient update step fn
def train_step(state, batch, label_smoothing_factor=0.0):
dropout_rng, new_dropout_rng = jax.random.split(state.dropout_rng)
def compute_loss(params):
labels = batch.pop("labels")
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss, num_labels = loss_fn(logits, labels, batch["decoder_attention_mask"], label_smoothing_factor)
return loss, num_labels
grad_fn = jax.value_and_grad(compute_loss, has_aux=True)
(loss, num_labels), grad = grad_fn(state.params)
num_labels = jax.lax.psum(num_labels, "batch")
# true loss = total loss / total samples
loss = jax.lax.psum(loss, "batch")
loss = jax.tree_util.tree_map(lambda x: x / num_labels, loss)
# true grad = total grad / total samples
grad = jax.lax.psum(grad, "batch")
grad = jax.tree_util.tree_map(lambda x: x / num_labels, grad)
new_state = state.apply_gradients(grads=grad, dropout_rng=new_dropout_rng)
metrics = {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}
return new_state, metrics
# Define eval fn
def eval_step(params, batch, label_smoothing_factor=0.0):
labels = batch.pop("labels")
logits = model(**batch, params=params, train=False)[0]
loss, num_labels = loss_fn(logits, labels, batch["decoder_attention_mask"], label_smoothing_factor)
num_labels = jax.lax.psum(num_labels, "batch")
# true loss = total loss / total samples
loss = jax.lax.psum(loss, "batch")
loss = jax.tree_util.tree_map(lambda x: x / num_labels, loss)
metrics = {"loss": loss}
return metrics
# Define generation function
max_length = (
data_args.val_max_target_length if data_args.val_max_target_length is not None else model.config.max_length
)
num_beams = data_args.num_beams if data_args.num_beams is not None else model.config.num_beams
gen_kwargs = {"max_length": max_length, "num_beams": num_beams}
def generate_step(params, batch):
model.params = params
output_ids = model.generate(batch["input_ids"], attention_mask=batch["attention_mask"], **gen_kwargs)
return output_ids.sequences
# Create parallel version of the train and eval step
p_train_step = jax.pmap(
partial(train_step, label_smoothing_factor=training_args.label_smoothing_factor), "batch", donate_argnums=(0,)
)
p_eval_step = jax.pmap(partial(eval_step, label_smoothing_factor=training_args.label_smoothing_factor), "batch")
p_generate_step = jax.pmap(generate_step, "batch")
# Replicate the train state on each device
state = state.replicate()
logger.info("***** Running training *****")
logger.info(f" Num examples = {len(train_dataset)}")
logger.info(f" Num Epochs = {num_epochs}")
logger.info(f" Instantaneous batch size per device = {training_args.per_device_train_batch_size}")
logger.info(f" Total train batch size (w. parallel & distributed) = {train_batch_size}")
logger.info(f" Total optimization steps = {total_train_steps}")
train_time = 0
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
# Create sampling rng
rng, input_rng = jax.random.split(rng)
train_metrics = []
# Generate an epoch by shuffling sampling indices from the train dataset
train_loader = data_loader(input_rng, train_dataset, train_batch_size, shuffle=True)
steps_per_epoch = len(train_dataset) // train_batch_size
# train
for _ in tqdm(range(steps_per_epoch), desc="Training...", position=1, leave=False):
batch = next(train_loader)
batch = shard(batch)
state, train_metric = p_train_step(state, batch)
train_metrics.append(train_metric)
train_time += time.time() - train_start
train_metric = unreplicate(train_metric)
epochs.write(
f"Epoch... ({epoch + 1}/{num_epochs} | Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
# ======================== Evaluating ==============================
eval_metrics = []
eval_preds = []
eval_labels = []
eval_loader = data_loader(input_rng, eval_dataset, eval_batch_size, drop_last=False)
eval_steps = math.ceil(len(eval_dataset) / eval_batch_size)
for _ in tqdm(range(eval_steps), desc="Evaluating...", position=2, leave=False):
# Model forward
batch = next(eval_loader)
labels = batch["labels"]
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, batch, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# generation
if data_args.predict_with_generate:
generated_ids = pad_shard_unpad(p_generate_step)(state.params, batch)
eval_preds.extend(jax.device_get(generated_ids.reshape(-1, gen_kwargs["max_length"])))
eval_labels.extend(labels)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.mean, eval_metrics)
# compute ROUGE metrics
rouge_desc = ""
if data_args.predict_with_generate:
rouge_metrics = compute_metrics(eval_preds, eval_labels)
eval_metrics.update(rouge_metrics)
rouge_desc = " ".join([f"Eval {key}: {value} |" for key, value in rouge_metrics.items()])
# Print metrics and update progress bar
desc = f"Epoch... ({epoch + 1}/{num_epochs} | Eval Loss: {eval_metrics['loss']} | {rouge_desc})"
epochs.write(desc)
epochs.desc = desc
# Save metrics
if has_tensorboard and jax.process_index() == 0:
cur_step = epoch * (len(train_dataset) // train_batch_size)
write_metric(summary_writer, train_metrics, eval_metrics, train_time, cur_step)
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(jax.tree_util.tree_map(lambda x: x[0], state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of epoch {epoch}", blocking=False)
# ======================== Prediction loop ==============================
if training_args.do_predict:
logger.info("*** Predict ***")
pred_metrics = []
pred_generations = []
pred_labels = []
pred_loader = data_loader(input_rng, predict_dataset, eval_batch_size, drop_last=False)
pred_steps = math.ceil(len(predict_dataset) / eval_batch_size)
for _ in tqdm(range(pred_steps), desc="Predicting...", position=2, leave=False):
# Model forward
batch = next(pred_loader)
labels = batch["labels"]
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, batch, min_device_batch=per_device_eval_batch_size
)
pred_metrics.append(metrics)
# generation
if data_args.predict_with_generate:
generated_ids = pad_shard_unpad(p_generate_step)(state.params, batch)
pred_generations.extend(jax.device_get(generated_ids.reshape(-1, gen_kwargs["max_length"])))
pred_labels.extend(labels)
# normalize prediction metrics
pred_metrics = get_metrics(pred_metrics)
pred_metrics = jax.tree_util.tree_map(jnp.mean, pred_metrics)
# compute ROUGE metrics
rouge_desc = ""
if data_args.predict_with_generate:
rouge_metrics = compute_metrics(pred_generations, pred_labels)
pred_metrics.update(rouge_metrics)
rouge_desc = " ".join([f"Predict {key}: {value} |" for key, value in rouge_metrics.items()])
# Print metrics
desc = f"Predict Loss: {pred_metrics['loss']} | {rouge_desc})"
logger.info(desc)
# save final metrics in json
if jax.process_index() == 0:
rouge_metrics = {f"test_{metric_name}": value for metric_name, value in rouge_metrics.items()}
path = os.path.join(training_args.output_dir, "test_results.json")
with open(path, "w") as f:
json.dump(rouge_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/summarization/run_summarization_flax.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning a 🤗 Flax Transformers model for sequence classification on GLUE."""
import json
import logging
import math
import os
import random
import sys
import time
import warnings
from dataclasses import dataclass, field
from pathlib import Path
from typing import Any, Callable, Dict, Optional, Tuple
import datasets
import evaluate
import jax
import jax.numpy as jnp
import numpy as np
import optax
from datasets import load_dataset
from flax import struct, traverse_util
from flax.jax_utils import pad_shard_unpad, replicate, unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
import transformers
from transformers import (
AutoConfig,
AutoTokenizer,
FlaxAutoModelForSequenceClassification,
HfArgumentParser,
PretrainedConfig,
TrainingArguments,
is_tensorboard_available,
)
from transformers.utils import check_min_version, send_example_telemetry
logger = logging.getLogger(__name__)
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.32.0.dev0")
Array = Any
Dataset = datasets.arrow_dataset.Dataset
PRNGKey = Any
task_to_keys = {
"cola": ("sentence", None),
"mnli": ("premise", "hypothesis"),
"mrpc": ("sentence1", "sentence2"),
"qnli": ("question", "sentence"),
"qqp": ("question1", "question2"),
"rte": ("sentence1", "sentence2"),
"sst2": ("sentence", None),
"stsb": ("sentence1", "sentence2"),
"wnli": ("sentence1", "sentence2"),
}
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
use_slow_tokenizer: Optional[bool] = field(
default=False,
metadata={"help": "If passed, will use a slow tokenizer (not backed by the 🤗 Tokenizers library)."},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
task_name: Optional[str] = field(
default=None, metadata={"help": f"The name of the glue task to train on. choices {list(task_to_keys.keys())}"}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a csv or JSON file)."}
)
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate on (a csv or JSON file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input test data file to predict on (a csv or JSON file)."},
)
text_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of text to input in the file (a csv or JSON file)."}
)
label_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of label to input in the file (a csv or JSON file)."}
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_seq_length: int = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization. If set, sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
def __post_init__(self):
if self.task_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
self.task_name = self.task_name.lower() if type(self.task_name) == str else self.task_name
def create_train_state(
model: FlaxAutoModelForSequenceClassification,
learning_rate_fn: Callable[[int], float],
is_regression: bool,
num_labels: int,
weight_decay: float,
) -> train_state.TrainState:
"""Create initial training state."""
class TrainState(train_state.TrainState):
"""Train state with an Optax optimizer.
The two functions below differ depending on whether the task is classification
or regression.
Args:
logits_fn: Applied to last layer to obtain the logits.
loss_fn: Function to compute the loss.
"""
logits_fn: Callable = struct.field(pytree_node=False)
loss_fn: Callable = struct.field(pytree_node=False)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
tx = optax.adamw(
learning_rate=learning_rate_fn, b1=0.9, b2=0.999, eps=1e-6, weight_decay=weight_decay, mask=decay_mask_fn
)
if is_regression:
def mse_loss(logits, labels):
return jnp.mean((logits[..., 0] - labels) ** 2)
return TrainState.create(
apply_fn=model.__call__,
params=model.params,
tx=tx,
logits_fn=lambda logits: logits[..., 0],
loss_fn=mse_loss,
)
else: # Classification.
def cross_entropy_loss(logits, labels):
xentropy = optax.softmax_cross_entropy(logits, onehot(labels, num_classes=num_labels))
return jnp.mean(xentropy)
return TrainState.create(
apply_fn=model.__call__,
params=model.params,
tx=tx,
logits_fn=lambda logits: logits.argmax(-1),
loss_fn=cross_entropy_loss,
)
def create_learning_rate_fn(
train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
"""Returns a linear warmup, linear_decay learning rate function."""
steps_per_epoch = train_ds_size // train_batch_size
num_train_steps = steps_per_epoch * num_train_epochs
warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
decay_fn = optax.linear_schedule(
init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
)
schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
return schedule_fn
def glue_train_data_collator(rng: PRNGKey, dataset: Dataset, batch_size: int):
"""Returns shuffled batches of size `batch_size` from truncated `train dataset`, sharded over all local devices."""
steps_per_epoch = len(dataset) // batch_size
perms = jax.random.permutation(rng, len(dataset))
perms = perms[: steps_per_epoch * batch_size] # Skip incomplete batch.
perms = perms.reshape((steps_per_epoch, batch_size))
for perm in perms:
batch = dataset[perm]
batch = {k: np.array(v) for k, v in batch.items()}
batch = shard(batch)
yield batch
def glue_eval_data_collator(dataset: Dataset, batch_size: int):
"""Returns batches of size `batch_size` from `eval dataset`. Sharding handled by `pad_shard_unpad` in the eval loop."""
batch_idx = np.arange(len(dataset))
steps_per_epoch = math.ceil(len(dataset) / batch_size)
batch_idx = np.array_split(batch_idx, steps_per_epoch)
for idx in batch_idx:
batch = dataset[idx]
batch = {k: np.array(v) for k, v in batch.items()}
yield batch
def main():
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_glue", model_args, data_args, framework="flax")
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
if jax.process_index() == 0:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON training and evaluation files (see below)
# or specify a GLUE benchmark task (the dataset will be downloaded automatically from the datasets Hub).
# For CSV/JSON files, this script will use as labels the column called 'label' and as pair of sentences the
# sentences in columns called 'sentence1' and 'sentence2' if such column exists or the first two columns not named
# label if at least two columns are provided.
# If the CSVs/JSONs contain only one non-label column, the script does single sentence classification on this
# single column. You can easily tweak this behavior (see below)
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.task_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(
"glue",
data_args.task_name,
token=model_args.token,
)
else:
# Loading the dataset from local csv or json file.
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = (data_args.train_file if data_args.train_file is not None else data_args.valid_file).split(".")[-1]
raw_datasets = load_dataset(
extension,
data_files=data_files,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Labels
if data_args.task_name is not None:
is_regression = data_args.task_name == "stsb"
if not is_regression:
label_list = raw_datasets["train"].features["label"].names
num_labels = len(label_list)
else:
num_labels = 1
else:
# Trying to have good defaults here, don't hesitate to tweak to your needs.
is_regression = raw_datasets["train"].features["label"].dtype in ["float32", "float64"]
if is_regression:
num_labels = 1
else:
# A useful fast method:
# https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.unique
label_list = raw_datasets["train"].unique("label")
label_list.sort() # Let's sort it for determinism
num_labels = len(label_list)
# Load pretrained model and tokenizer
config = AutoConfig.from_pretrained(
model_args.model_name_or_path,
num_labels=num_labels,
finetuning_task=data_args.task_name,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path,
use_fast=not model_args.use_slow_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
model = FlaxAutoModelForSequenceClassification.from_pretrained(
model_args.model_name_or_path,
config=config,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
# Preprocessing the datasets
if data_args.task_name is not None:
sentence1_key, sentence2_key = task_to_keys[data_args.task_name]
else:
# Again, we try to have some nice defaults but don't hesitate to tweak to your use case.
non_label_column_names = [name for name in raw_datasets["train"].column_names if name != "label"]
if "sentence1" in non_label_column_names and "sentence2" in non_label_column_names:
sentence1_key, sentence2_key = "sentence1", "sentence2"
else:
if len(non_label_column_names) >= 2:
sentence1_key, sentence2_key = non_label_column_names[:2]
else:
sentence1_key, sentence2_key = non_label_column_names[0], None
# Some models have set the order of the labels to use, so let's make sure we do use it.
label_to_id = None
if (
model.config.label2id != PretrainedConfig(num_labels=num_labels).label2id
and data_args.task_name is not None
and not is_regression
):
# Some have all caps in their config, some don't.
label_name_to_id = {k.lower(): v for k, v in model.config.label2id.items()}
if sorted(label_name_to_id.keys()) == sorted(label_list):
logger.info(
f"The configuration of the model provided the following label correspondence: {label_name_to_id}. "
"Using it!"
)
label_to_id = {i: label_name_to_id[label_list[i]] for i in range(num_labels)}
else:
logger.warning(
"Your model seems to have been trained with labels, but they don't match the dataset: ",
f"model labels: {sorted(label_name_to_id.keys())}, dataset labels: {sorted(label_list)}."
"\nIgnoring the model labels as a result.",
)
elif data_args.task_name is None:
label_to_id = {v: i for i, v in enumerate(label_list)}
def preprocess_function(examples):
# Tokenize the texts
texts = (
(examples[sentence1_key],) if sentence2_key is None else (examples[sentence1_key], examples[sentence2_key])
)
result = tokenizer(*texts, padding="max_length", max_length=data_args.max_seq_length, truncation=True)
if "label" in examples:
if label_to_id is not None:
# Map labels to IDs (not necessary for GLUE tasks)
result["labels"] = [label_to_id[l] for l in examples["label"]]
else:
# In all cases, rename the column to labels because the model will expect that.
result["labels"] = examples["label"]
return result
processed_datasets = raw_datasets.map(
preprocess_function, batched=True, remove_columns=raw_datasets["train"].column_names
)
train_dataset = processed_datasets["train"]
eval_dataset = processed_datasets["validation_matched" if data_args.task_name == "mnli" else "validation"]
# Log a few random samples from the training set:
for index in random.sample(range(len(train_dataset)), 3):
logger.info(f"Sample {index} of the training set: {train_dataset[index]}.")
# Define a summary writer
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(training_args.output_dir)
summary_writer.hparams({**training_args.to_dict(), **vars(model_args), **vars(data_args)})
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
num_epochs = int(training_args.num_train_epochs)
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
train_batch_size = int(training_args.per_device_train_batch_size) * jax.local_device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
learning_rate_fn = create_learning_rate_fn(
len(train_dataset),
train_batch_size,
training_args.num_train_epochs,
training_args.warmup_steps,
training_args.learning_rate,
)
state = create_train_state(
model, learning_rate_fn, is_regression, num_labels=num_labels, weight_decay=training_args.weight_decay
)
# define step functions
def train_step(
state: train_state.TrainState, batch: Dict[str, Array], dropout_rng: PRNGKey
) -> Tuple[train_state.TrainState, float]:
"""Trains model with an optimizer (both in `state`) on `batch`, returning a pair `(new_state, loss)`."""
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
targets = batch.pop("labels")
def loss_fn(params):
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss = state.loss_fn(logits, targets)
return loss
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad)
metrics = jax.lax.pmean({"loss": loss, "learning_rate": learning_rate_fn(state.step)}, axis_name="batch")
return new_state, metrics, new_dropout_rng
p_train_step = jax.pmap(train_step, axis_name="batch", donate_argnums=(0,))
def eval_step(state, batch):
logits = state.apply_fn(**batch, params=state.params, train=False)[0]
return state.logits_fn(logits)
p_eval_step = jax.pmap(eval_step, axis_name="batch")
if data_args.task_name is not None:
metric = evaluate.load("glue", data_args.task_name)
else:
metric = evaluate.load("accuracy")
logger.info(f"===== Starting training ({num_epochs} epochs) =====")
train_time = 0
# make sure weights are replicated on each device
state = replicate(state)
steps_per_epoch = len(train_dataset) // train_batch_size
total_steps = steps_per_epoch * num_epochs
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (0/{num_epochs})", position=0)
for epoch in epochs:
train_start = time.time()
train_metrics = []
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# train
train_loader = glue_train_data_collator(input_rng, train_dataset, train_batch_size)
for step, batch in enumerate(
tqdm(
train_loader,
total=steps_per_epoch,
desc="Training...",
position=1,
),
):
state, train_metric, dropout_rngs = p_train_step(state, batch, dropout_rngs)
train_metrics.append(train_metric)
cur_step = (epoch * steps_per_epoch) + (step + 1)
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step}/{total_steps} | Training Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
train_metrics = []
if (cur_step % training_args.eval_steps == 0 or cur_step % steps_per_epoch == 0) and cur_step > 0:
# evaluate
eval_loader = glue_eval_data_collator(eval_dataset, eval_batch_size)
for batch in tqdm(
eval_loader,
total=math.ceil(len(eval_dataset) / eval_batch_size),
desc="Evaluating ...",
position=2,
):
labels = batch.pop("labels")
predictions = pad_shard_unpad(p_eval_step)(
state, batch, min_device_batch=per_device_eval_batch_size
)
metric.add_batch(predictions=np.array(predictions), references=labels)
eval_metric = metric.compute()
logger.info(f"Step... ({cur_step}/{total_steps} | Eval metrics: {eval_metric})")
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metric, cur_step)
if (cur_step % training_args.save_steps == 0 and cur_step > 0) or (cur_step == total_steps):
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(unreplicate(state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
epochs.desc = f"Epoch ... {epoch + 1}/{num_epochs}"
# save the eval metrics in json
if jax.process_index() == 0:
eval_metric = {f"eval_{metric_name}": value for metric_name, value in eval_metric.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metric, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/text-classification/run_flax_glue.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for masked language modeling (BERT, ALBERT, RoBERTa...) with whole word masking on a
text file or a dataset.
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=fill-mask
"""
import json
import logging
import math
import os
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from itertools import chain
# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
from pathlib import Path
from typing import Dict, List, Optional, Tuple
import flax
import jax
import jax.numpy as jnp
import numpy as np
import optax
from datasets import load_dataset
from flax import jax_utils, traverse_util
from flax.jax_utils import pad_shard_unpad
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
from transformers import (
CONFIG_MAPPING,
FLAX_MODEL_FOR_MASKED_LM_MAPPING,
AutoConfig,
AutoTokenizer,
FlaxAutoModelForMaskedLM,
HfArgumentParser,
PreTrainedTokenizerBase,
TensorType,
is_tensorboard_available,
set_seed,
)
from transformers.utils import send_example_telemetry
MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
gradient_checkpointing: bool = field(
default=False,
metadata={
"help": "If True, use gradient checkpointing to save memory at the expense of slower backward pass."
},
)
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated. Default to the max input length of the model."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for masked language modeling loss"}
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch."
)
},
)
line_by_line: bool = field(
default=False,
metadata={"help": "Whether distinct lines of text in the dataset are to be handled as distinct sequences."},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
@flax.struct.dataclass
class FlaxDataCollatorForLanguageModeling:
"""
Data collator used for language modeling. Inputs are dynamically padded to the maximum length of a batch if they
are not all of the same length.
Args:
tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
The tokenizer used for encoding the data.
mlm_probability (:obj:`float`, `optional`, defaults to 0.15):
The probability with which to (randomly) mask tokens in the input.
.. note::
For best performance, this data collator should be used with a dataset having items that are dictionaries or
BatchEncoding, with the :obj:`"special_tokens_mask"` key, as returned by a
:class:`~transformers.PreTrainedTokenizer` or a :class:`~transformers.PreTrainedTokenizerFast` with the
argument :obj:`return_special_tokens_mask=True`.
"""
tokenizer: PreTrainedTokenizerBase
mlm_probability: float = 0.15
def __post_init__(self):
if self.tokenizer.mask_token is None:
raise ValueError(
"This tokenizer does not have a mask token which is necessary for masked language modeling. "
"You should pass `mlm=False` to train on causal language modeling instead."
)
def __call__(self, examples: List[Dict[str, np.ndarray]], pad_to_multiple_of: int) -> Dict[str, np.ndarray]:
# Handle dict or lists with proper padding and conversion to tensor.
batch = self.tokenizer.pad(examples, pad_to_multiple_of=pad_to_multiple_of, return_tensors=TensorType.NUMPY)
# If special token mask has been preprocessed, pop it from the dict.
special_tokens_mask = batch.pop("special_tokens_mask", None)
batch["input_ids"], batch["labels"] = self.mask_tokens(
batch["input_ids"], special_tokens_mask=special_tokens_mask
)
return batch
def mask_tokens(
self, inputs: np.ndarray, special_tokens_mask: Optional[np.ndarray]
) -> Tuple[np.ndarray, np.ndarray]:
"""
Prepare masked tokens inputs/labels for masked language modeling: 80% MASK, 10% random, 10% original.
"""
labels = inputs.copy()
# We sample a few tokens in each sequence for MLM training (with probability `self.mlm_probability`)
probability_matrix = np.full(labels.shape, self.mlm_probability)
special_tokens_mask = special_tokens_mask.astype("bool")
probability_matrix[special_tokens_mask] = 0.0
masked_indices = np.random.binomial(1, probability_matrix).astype("bool")
labels[~masked_indices] = -100 # We only compute loss on masked tokens
# 80% of the time, we replace masked input tokens with tokenizer.mask_token ([MASK])
indices_replaced = np.random.binomial(1, np.full(labels.shape, 0.8)).astype("bool") & masked_indices
inputs[indices_replaced] = self.tokenizer.convert_tokens_to_ids(self.tokenizer.mask_token)
# 10% of the time, we replace masked input tokens with random word
indices_random = np.random.binomial(1, np.full(labels.shape, 0.5)).astype("bool")
indices_random &= masked_indices & ~indices_replaced
random_words = np.random.randint(self.tokenizer.vocab_size, size=labels.shape, dtype="i4")
inputs[indices_random] = random_words[indices_random]
# The rest of the time (10% of the time) we keep the masked input tokens unchanged
return inputs, labels
def generate_batch_splits(samples_idx: np.ndarray, batch_size: int, drop_last=True) -> np.ndarray:
"""Generate batches of data for a specified batch size from sample indices. If the dataset size is not divisible by
the batch size and `drop_last` is `True`, the last incomplete batch is dropped. Else, it is returned."""
num_samples = len(samples_idx)
if drop_last:
samples_to_remove = num_samples % batch_size
if samples_to_remove != 0:
samples_idx = samples_idx[:-samples_to_remove]
sections_split = num_samples // batch_size
samples_idx = samples_idx.reshape((sections_split, batch_size))
else:
sections_split = math.ceil(num_samples / batch_size)
samples_idx = np.array_split(samples_idx, sections_split)
return samples_idx
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_mlm", model_args, data_args, framework="flax")
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
level=logging.INFO,
datefmt="[%X]",
)
# Log on each process the small summary:
logger = logging.getLogger(__name__)
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantees that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(
extension,
data_files=data_files,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
extension,
data_files=data_files,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
datasets["train"] = load_dataset(
extension,
data_files=data_files,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
if model_args.config_name:
config = AutoConfig.from_pretrained(
model_args.config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
if data_args.line_by_line:
# When using line_by_line, we just tokenize each nonempty line.
padding = "max_length" if data_args.pad_to_max_length else False
def tokenize_function(examples):
# Remove empty lines
examples = [line for line in examples if len(line) > 0 and not line.isspace()]
return tokenizer(
examples,
return_special_tokens_mask=True,
padding=padding,
truncation=True,
max_length=max_seq_length,
)
tokenized_datasets = datasets.map(
tokenize_function,
input_columns=[text_column_name],
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
else:
# Otherwise, we tokenize every text, then concatenate them together before splitting them in smaller parts.
# We use `return_special_tokens_mask=True` because DataCollatorForLanguageModeling (see below) is more
# efficient when it receives the `special_tokens_mask`.
def tokenize_function(examples):
return tokenizer(examples[text_column_name], return_special_tokens_mask=True)
tokenized_datasets = datasets.map(
tokenize_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# Main data processing function that will concatenate all texts from our dataset and generate chunks of
# max_seq_length.
def group_texts(examples):
# Concatenate all texts.
concatenated_examples = {k: list(chain(*examples[k])) for k in examples.keys()}
total_length = len(concatenated_examples[list(examples.keys())[0]])
# We drop the small remainder, we could add padding if the model supported it instead of this drop, you can
# customize this part to your needs.
if total_length >= max_seq_length:
total_length = (total_length // max_seq_length) * max_seq_length
# Split by chunks of max_len.
result = {
k: [t[i : i + max_seq_length] for i in range(0, total_length, max_seq_length)]
for k, t in concatenated_examples.items()
}
return result
# Note that with `batched=True`, this map processes 1,000 texts together, so group_texts throws away a
# remainder for each of those groups of 1,000 texts. You can adjust that batch_size here but a higher value
# might be slower to preprocess.
#
# To speed up this part, we use multiprocessing. See the documentation of the map method for more information:
# https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.map
tokenized_datasets = tokenized_datasets.map(
group_texts,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Data collator
# This one will take care of randomly masking the tokens.
data_collator = FlaxDataCollatorForLanguageModeling(tokenizer=tokenizer, mlm_probability=data_args.mlm_probability)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
if model_args.model_name_or_path:
model = FlaxAutoModelForMaskedLM.from_pretrained(
model_args.model_name_or_path,
config=config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
model = FlaxAutoModelForMaskedLM.from_config(
config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
trust_remote_code=model_args.trust_remote_code,
)
if training_args.gradient_checkpointing:
model.enable_gradient_checkpointing()
# Store some constant
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
num_train_steps = len(tokenized_datasets["train"]) // train_batch_size * num_epochs
# Create learning rate schedule
warmup_fn = optax.linear_schedule(
init_value=0.0, end_value=training_args.learning_rate, transition_steps=training_args.warmup_steps
)
decay_fn = optax.linear_schedule(
init_value=training_args.learning_rate,
end_value=0,
transition_steps=num_train_steps - training_args.warmup_steps,
)
linear_decay_lr_schedule_fn = optax.join_schedules(
schedules=[warmup_fn, decay_fn], boundaries=[training_args.warmup_steps]
)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
# create adam optimizer
if training_args.adafactor:
# We use the default parameters here to initialize adafactor,
# For more details about the parameters please check https://github.com/deepmind/optax/blob/ed02befef9bf81cbbf236be3d2b0e032e9ed4a40/optax/_src/alias.py#L74
optimizer = optax.adafactor(
learning_rate=linear_decay_lr_schedule_fn,
)
else:
optimizer = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
# Setup train state
state = train_state.TrainState.create(apply_fn=model.__call__, params=model.params, tx=optimizer)
# Define gradient update step fn
def train_step(state, batch, dropout_rng):
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
def loss_fn(params):
labels = batch.pop("labels")
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
# compute loss, ignore padded input tokens
label_mask = jnp.where(labels > 0, 1.0, 0.0)
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1])) * label_mask
# take average
loss = loss.sum()
num_labels = label_mask.sum()
return loss, num_labels
grad_fn = jax.value_and_grad(loss_fn, has_aux=True)
(loss, num_labels), grad = grad_fn(state.params)
num_labels = jax.lax.psum(num_labels, "batch")
# true loss = total loss / total samples
loss = jax.lax.psum(loss, "batch")
loss = jax.tree_util.tree_map(lambda x: x / num_labels, loss)
# true grad = total grad / total samples
grad = jax.lax.psum(grad, "batch")
grad = jax.tree_util.tree_map(lambda x: x / num_labels, grad)
new_state = state.apply_gradients(grads=grad)
metrics = {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}
return new_state, metrics, new_dropout_rng
# Create parallel version of the train step
p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
# Define eval fn
def eval_step(params, batch):
labels = batch.pop("labels")
logits = model(**batch, params=params, train=False)[0]
# compute loss, ignore padded input tokens
label_mask = jnp.where(labels > 0, 1.0, 0.0)
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1])) * label_mask
# compute accuracy
accuracy = jnp.equal(jnp.argmax(logits, axis=-1), labels) * label_mask
# summarize metrics
metrics = {"loss": loss.sum(), "accuracy": accuracy.sum(), "normalizer": label_mask.sum()}
metrics = jax.lax.psum(metrics, axis_name="batch")
return metrics
p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
# Replicate the train state on each device
state = jax_utils.replicate(state)
train_time = 0
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
train_metrics = []
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# Generate an epoch by shuffling sampling indices from the train dataset
num_train_samples = len(tokenized_datasets["train"])
# Avoid using jax.numpy here in case of TPU training
train_samples_idx = np.random.permutation(np.arange(num_train_samples))
train_batch_idx = generate_batch_splits(train_samples_idx, train_batch_size)
# Gather the indexes for creating the batch and do a training step
for step, batch_idx in enumerate(tqdm(train_batch_idx, desc="Training...", position=1)):
samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
model_inputs = shard(model_inputs.data)
state, train_metric, dropout_rngs = p_train_step(state, model_inputs, dropout_rngs)
train_metrics.append(train_metric)
cur_step = epoch * (num_train_samples // train_batch_size) + step
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = jax_utils.unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step} | Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
train_metrics = []
if cur_step % training_args.eval_steps == 0 and cur_step > 0:
# ======================== Evaluating ==============================
num_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size, drop_last=False)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, model_inputs.data, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.sum, eval_metrics)
eval_normalizer = eval_metrics.pop("normalizer")
eval_metrics = jax.tree_util.tree_map(lambda x: x / eval_normalizer, eval_metrics)
# Update progress bar
epochs.desc = f"Step... ({cur_step} | Loss: {eval_metrics['loss']}, Acc: {eval_metrics['accuracy']})"
# Save metrics
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metrics, cur_step)
if cur_step % training_args.save_steps == 0 and cur_step > 0:
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(jax.tree_util.tree_map(lambda x: x[0], state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
# Eval after training
if training_args.do_eval:
num_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size, drop_last=False)
eval_metrics = []
for _, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples, pad_to_multiple_of=16)
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, model_inputs.data, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(lambda metric: jnp.sum(metric).item(), eval_metrics)
eval_normalizer = eval_metrics.pop("normalizer")
eval_metrics = jax.tree_util.tree_map(lambda x: x / eval_normalizer, eval_metrics)
try:
perplexity = math.exp(eval_metrics["loss"])
except OverflowError:
perplexity = float("inf")
eval_metrics["perplexity"] = perplexity
if jax.process_index() == 0:
eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/language-modeling/run_mlm_flax.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Pre-training/Fine-tuning the library models for causal language modeling (GPT, GPT-2, CTRL, ...) on a text file or a dataset.
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=text-generation
"""
# You can also adapt this script on your own causal language modeling task. Pointers for this are left as comments.
import json
import logging
import math
import os
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from itertools import chain
from pathlib import Path
from typing import Callable, Optional
import datasets
import jax
import jax.numpy as jnp
import numpy as np
import optax
from datasets import Dataset, load_dataset
from flax import jax_utils, traverse_util
from flax.jax_utils import pad_shard_unpad, unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard, shard_prng_key
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
import transformers
from transformers import (
CONFIG_MAPPING,
FLAX_MODEL_FOR_CAUSAL_LM_MAPPING,
AutoConfig,
AutoTokenizer,
FlaxAutoModelForCausalLM,
HfArgumentParser,
is_tensorboard_available,
set_seed,
)
from transformers.testing_utils import CaptureLogger
from transformers.utils import send_example_telemetry
logger = logging.getLogger(__name__)
MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_CAUSAL_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
block_size: Optional[int] = field(
default=None,
metadata={
"help": (
"Optional input sequence length after tokenization. "
"The training dataset will be truncated in block of this size for training. "
"Default to the model max input length for single sentence inputs (take into account special tokens)."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
keep_linebreaks: bool = field(
default=True, metadata={"help": "Whether to keep line breaks when using TXT files or not."}
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
if extension not in ["csv", "json", "txt"]:
raise ValueError("train_file` should be a csv, json or text file.")
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
if extension not in ["csv", "json", "txt"]:
raise ValueError("`validation_file` should be a csv, json or text file.")
class TrainState(train_state.TrainState):
dropout_rng: jnp.ndarray
def replicate(self):
return jax_utils.replicate(self).replace(dropout_rng=shard_prng_key(self.dropout_rng))
def data_loader(rng: jax.random.PRNGKey, dataset: Dataset, batch_size: int, shuffle: bool = False, drop_last=True):
"""
Returns batches of size `batch_size` from `dataset`. If `drop_last` is set to `False`, the final batch may be incomplete,
and range in size from 1 to `batch_size`. Shuffle batches if `shuffle` is `True`.
"""
if shuffle:
batch_idx = jax.random.permutation(rng, len(dataset))
batch_idx = np.asarray(batch_idx)
else:
batch_idx = np.arange(len(dataset))
if drop_last:
steps_per_epoch = len(dataset) // batch_size
batch_idx = batch_idx[: steps_per_epoch * batch_size] # Skip incomplete batch.
batch_idx = batch_idx.reshape((steps_per_epoch, batch_size))
else:
steps_per_epoch = math.ceil(len(dataset) / batch_size)
batch_idx = np.array_split(batch_idx, steps_per_epoch)
for idx in batch_idx:
batch = dataset[idx]
batch = {k: np.array(v) for k, v in batch.items()}
yield batch
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def create_learning_rate_fn(
train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
"""Returns a linear warmup, linear_decay learning rate function."""
steps_per_epoch = train_ds_size // train_batch_size
num_train_steps = steps_per_epoch * num_train_epochs
warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
decay_fn = optax.linear_schedule(
init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
)
schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
return schedule_fn
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_clm", model_args, data_args, framework="flax")
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
if jax.process_index() == 0:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantees that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
dataset = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
keep_in_memory=False,
token=model_args.token,
)
if "validation" not in dataset.keys():
dataset["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
dataset["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
data_files = {}
dataset_args = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
dataset_args["keep_linebreaks"] = data_args.keep_linebreaks
dataset = load_dataset(
extension,
data_files=data_files,
cache_dir=model_args.cache_dir,
**dataset_args,
token=model_args.token,
)
if "validation" not in dataset.keys():
dataset["validation"] = load_dataset(
extension,
data_files=data_files,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
**dataset_args,
token=model_args.token,
)
dataset["train"] = load_dataset(
extension,
data_files=data_files,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
**dataset_args,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
if model_args.config_name:
config = AutoConfig.from_pretrained(
model_args.config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if model_args.model_name_or_path:
model = FlaxAutoModelForCausalLM.from_pretrained(
model_args.model_name_or_path,
config=config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
model = FlaxAutoModelForCausalLM.from_config(
config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
trust_remote_code=model_args.trust_remote_code,
)
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = dataset["train"].column_names
else:
column_names = dataset["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
# since this will be pickled to avoid _LazyModule error in Hasher force logger loading before tokenize_function
tok_logger = transformers.utils.logging.get_logger("transformers.tokenization_utils_base")
def tokenize_function(examples):
with CaptureLogger(tok_logger) as cl:
output = tokenizer(examples[text_column_name])
# clm input could be much much longer than block_size
if "Token indices sequence length is longer than the" in cl.out:
tok_logger.warning(
"^^^^^^^^^^^^^^^^ Please ignore the warning above - this long input will be chunked into smaller bits"
" before being passed to the model."
)
return output
tokenized_datasets = dataset.map(
tokenize_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
if data_args.block_size is None:
block_size = tokenizer.model_max_length
if block_size > config.max_position_embeddings:
logger.warning(
f"The tokenizer picked seems to have a very large `model_max_length` ({tokenizer.model_max_length}). "
"Picking 1024 instead. You can change that default value by passing --block_size xxx."
)
block_size = 1024
else:
if data_args.block_size > tokenizer.model_max_length:
logger.warning(
f"The block_size passed ({data_args.block_size}) is larger than the maximum length for the model"
f"({tokenizer.model_max_length}). Using block_size={tokenizer.model_max_length}."
)
block_size = min(data_args.block_size, tokenizer.model_max_length)
# Main data processing function that will concatenate all texts from our dataset and generate chunks of block_size.
def group_texts(examples):
# Concatenate all texts.
concatenated_examples = {k: list(chain(*examples[k])) for k in examples.keys()}
total_length = len(concatenated_examples[list(examples.keys())[0]])
# We drop the small remainder, we could add padding if the model supported it instead of this drop, you can
# customize this part to your needs.
if total_length >= block_size:
total_length = (total_length // block_size) * block_size
# Split by chunks of max_len.
result = {
k: [t[i : i + block_size] for i in range(0, total_length, block_size)]
for k, t in concatenated_examples.items()
}
result["labels"] = result["input_ids"].copy()
return result
# Note that with `batched=True`, this map processes 1,000 texts together, so group_texts throws away a remainder
# for each of those groups of 1,000 texts. You can adjust that batch_size here but a higher value might be slower
# to preprocess.
#
# To speed up this part, we use multiprocessing. See the documentation of the map method for more information:
# https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.map
lm_datasets = tokenized_datasets.map(
group_texts,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_train:
if "train" not in tokenized_datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = lm_datasets["train"]
if data_args.max_train_samples is not None:
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
if training_args.do_eval:
if "validation" not in tokenized_datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = lm_datasets["validation"]
if data_args.max_eval_samples is not None:
max_eval_samples = min(len(eval_dataset), data_args.max_eval_samples)
eval_dataset = eval_dataset.select(range(max_eval_samples))
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
rng, dropout_rng = jax.random.split(rng)
# Store some constant
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
steps_per_epoch = len(train_dataset) // train_batch_size
total_train_steps = steps_per_epoch * num_epochs
# Create learning rate schedule
linear_decay_lr_schedule_fn = create_learning_rate_fn(
len(train_dataset),
train_batch_size,
training_args.num_train_epochs,
training_args.warmup_steps,
training_args.learning_rate,
)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
# create adam optimizer
if training_args.adafactor:
# We use the default parameters here to initialize adafactor,
# For more details about the parameters please check https://github.com/deepmind/optax/blob/ed02befef9bf81cbbf236be3d2b0e032e9ed4a40/optax/_src/alias.py#L74
optimizer = optax.adafactor(
learning_rate=linear_decay_lr_schedule_fn,
)
else:
optimizer = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
# Setup train state
state = TrainState.create(apply_fn=model.__call__, params=model.params, tx=optimizer, dropout_rng=dropout_rng)
def loss_fn(logits, labels):
shift_logits = logits[..., :-1, :]
shift_labels = labels[..., 1:]
loss = optax.softmax_cross_entropy(shift_logits, onehot(shift_labels, shift_logits.shape[-1]))
return loss.mean()
# Define gradient update step fn
def train_step(state, batch):
dropout_rng, new_dropout_rng = jax.random.split(state.dropout_rng)
def compute_loss(params):
labels = batch.pop("labels")
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss = loss_fn(logits, labels)
return loss
grad_fn = jax.value_and_grad(compute_loss)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad, dropout_rng=new_dropout_rng)
metrics = {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}
metrics = jax.lax.pmean(metrics, axis_name="batch")
return new_state, metrics
# Define eval fn
def eval_step(params, batch):
labels = batch.pop("labels")
logits = model(**batch, params=params, train=False)[0]
loss = loss_fn(logits, labels)
# summarize metrics
metrics = {"loss": loss}
metrics = jax.lax.pmean(metrics, axis_name="batch")
return metrics
# Create parallel version of the train and eval step
p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
p_eval_step = jax.pmap(eval_step, "batch")
# Replicate the train state on each device
state = state.replicate()
logger.info("***** Running training *****")
logger.info(f" Num examples = {len(train_dataset)}")
logger.info(f" Num Epochs = {num_epochs}")
logger.info(f" Instantaneous batch size per device = {training_args.per_device_train_batch_size}")
logger.info(f" Total train batch size (w. parallel & distributed) = {train_batch_size}")
logger.info(f" Total optimization steps = {total_train_steps}")
train_time = 0
train_metrics = []
epochs = tqdm(range(num_epochs), desc="Epoch ... ", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# Generate an epoch by shuffling sampling indices from the train dataset
train_loader = data_loader(input_rng, train_dataset, train_batch_size, shuffle=True)
steps_per_epoch = len(train_dataset) // train_batch_size
# train
for step in tqdm(range(steps_per_epoch), desc="Training...", position=1, leave=False):
batch = next(train_loader)
batch = shard(batch)
state, train_metric = p_train_step(state, batch)
train_metrics.append(train_metric)
cur_step = epoch * (len(train_dataset) // train_batch_size) + step
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step} | Loss: {train_metric['loss'].mean()}, Learning Rate:"
f" {train_metric['learning_rate'].mean()})"
)
train_metrics = []
if cur_step % training_args.eval_steps == 0 and cur_step > 0:
# ======================== Evaluating ==============================
eval_metrics = []
eval_loader = data_loader(input_rng, eval_dataset, eval_batch_size, drop_last=False)
eval_steps = math.ceil(len(eval_dataset) / eval_batch_size)
for _ in tqdm(range(eval_steps), desc="Evaluating...", position=2, leave=False):
# Model forward
batch = next(eval_loader)
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, batch, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.mean, eval_metrics)
try:
eval_metrics["perplexity"] = math.exp(eval_metrics["loss"])
except OverflowError:
eval_metrics["perplexity"] = float("inf")
# Print metrics and update progress bar
desc = (
f"Step... ({cur_step} | Eval Loss: {eval_metrics['loss']} | Eval Perplexity:"
f" {eval_metrics['perplexity']})"
)
epochs.write(desc)
epochs.desc = desc
# Save metrics
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metrics, cur_step)
if cur_step % training_args.save_steps == 0 and cur_step > 0:
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(unreplicate(state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
# Eval after training
if training_args.do_eval:
eval_metrics = []
eval_loader = data_loader(input_rng, eval_dataset, eval_batch_size, drop_last=False)
eval_steps = math.ceil(len(eval_dataset) / eval_batch_size)
for _ in tqdm(range(eval_steps), desc="Evaluating...", position=2, leave=False):
# Model forward
batch = next(eval_loader)
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, batch, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(lambda x: jnp.mean(x).item(), eval_metrics)
try:
eval_metrics["perplexity"] = math.exp(eval_metrics["loss"])
except OverflowError:
eval_metrics["perplexity"] = float("inf")
if jax.process_index() == 0:
eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/language-modeling/run_clm_flax.py |
#!/usr/bin/env python3
import json
from typing import Iterator, List, Union
from tokenizers import AddedToken, Regex, Tokenizer, decoders, normalizers, pre_tokenizers, trainers
from tokenizers.implementations.base_tokenizer import BaseTokenizer
from tokenizers.models import Unigram
from tokenizers.processors import TemplateProcessing
class SentencePieceUnigramTokenizer(BaseTokenizer):
"""
This class is a copy of `DeDLOC's tokenizer implementation <https://github.com/yandex-research/DeDLOC/blob/main/sahajbert/tokenizer/tokenizer_model.py>`__ .
Custom SentencePiece Unigram Tokenizer with NMT, NKFC, spaces and lower-casing characters normalization
Represents the Unigram algorithm, with the pretokenization used by SentencePiece
"""
def __init__(
self,
replacement: str = "▁",
add_prefix_space: bool = True,
unk_token: Union[str, AddedToken] = "<unk>",
eos_token: Union[str, AddedToken] = "</s>",
pad_token: Union[str, AddedToken] = "<pad>",
):
self.special_tokens = {
"pad": {"id": 0, "token": pad_token},
"eos": {"id": 1, "token": eos_token},
"unk": {"id": 2, "token": unk_token},
}
self.special_tokens_list = [None] * len(self.special_tokens)
for token_dict in self.special_tokens.values():
self.special_tokens_list[token_dict["id"]] = token_dict["token"]
tokenizer = Tokenizer(Unigram())
tokenizer.normalizer = normalizers.Sequence(
[
normalizers.Nmt(),
normalizers.NFKC(),
normalizers.Replace(Regex(" {2,}"), " "),
normalizers.Lowercase(),
]
)
tokenizer.pre_tokenizer = pre_tokenizers.Sequence(
[
pre_tokenizers.Metaspace(replacement=replacement, add_prefix_space=add_prefix_space),
pre_tokenizers.Digits(individual_digits=True),
pre_tokenizers.Punctuation(),
]
)
tokenizer.decoder = decoders.Metaspace(replacement=replacement, add_prefix_space=add_prefix_space)
tokenizer.post_processor = TemplateProcessing(
single=f"$A {self.special_tokens['eos']['token']}",
special_tokens=[(self.special_tokens["eos"]["token"], self.special_tokens["eos"]["id"])],
)
parameters = {
"model": "SentencePieceUnigram",
"replacement": replacement,
"add_prefix_space": add_prefix_space,
}
super().__init__(tokenizer, parameters)
def train(
self,
files: Union[str, List[str]],
vocab_size: int = 8000,
show_progress: bool = True,
):
"""Train the model using the given files"""
trainer = trainers.UnigramTrainer(
vocab_size=vocab_size,
special_tokens=self.special_tokens_list,
show_progress=show_progress,
)
if isinstance(files, str):
files = [files]
self._tokenizer.train(files, trainer=trainer)
self.add_unk_id()
def train_from_iterator(
self,
iterator: Union[Iterator[str], Iterator[Iterator[str]]],
vocab_size: int = 8000,
show_progress: bool = True,
):
"""Train the model using the given iterator"""
trainer = trainers.UnigramTrainer(
vocab_size=vocab_size,
special_tokens=self.special_tokens_list,
show_progress=show_progress,
)
self._tokenizer.train_from_iterator(iterator, trainer=trainer)
self.add_unk_id()
def add_unk_id(self):
tokenizer_json = json.loads(self._tokenizer.to_str())
tokenizer_json["model"]["unk_id"] = self.special_tokens["unk"]["id"]
self._tokenizer = Tokenizer.from_str(json.dumps(tokenizer_json))
| transformers-main | examples/flax/language-modeling/t5_tokenizer_model.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Pretraining the library models for T5-like span-masked language modeling on a text file or a dataset.
Here is the full list of checkpoints on the hub that can be pretrained by this script:
https://huggingface.co/models?filter=t5
"""
import json
import logging
import math
import os
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
from enum import Enum
from itertools import chain
from pathlib import Path
from typing import Dict, List, Optional
import flax
import jax
import jax.numpy as jnp
import numpy as np
import optax
from datasets import load_dataset
from flax import jax_utils, traverse_util
from flax.jax_utils import pad_shard_unpad
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
from transformers import (
CONFIG_MAPPING,
FLAX_MODEL_FOR_MASKED_LM_MAPPING,
AutoTokenizer,
BatchEncoding,
FlaxT5ForConditionalGeneration,
HfArgumentParser,
PreTrainedTokenizerBase,
T5Config,
is_tensorboard_available,
set_seed,
)
from transformers.models.t5.modeling_flax_t5 import shift_tokens_right
from transformers.utils import send_example_telemetry
MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization and masking. Sequences longer than this"
" will be truncated. Default to the max input length of the model."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for span masked language modeling loss"}
)
mean_noise_span_length: float = field(
default=3.0,
metadata={"help": "Mean span length of masked tokens"},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
def compute_input_and_target_lengths(inputs_length, noise_density, mean_noise_span_length):
"""This function is copy of `random_spans_helper <https://github.com/google-research/text-to-text-transfer-transformer/blob/84f8bcc14b5f2c03de51bd3587609ba8f6bbd1cd/t5/data/preprocessors.py#L2466>`__ .
Training parameters to avoid padding with random_spans_noise_mask.
When training a model with random_spans_noise_mask, we would like to set the other
training hyperparmeters in a way that avoids padding.
This function helps us compute these hyperparameters.
We assume that each noise span in the input is replaced by extra_tokens_per_span_inputs sentinel tokens,
and each non-noise span in the targets is replaced by extra_tokens_per_span_targets sentinel tokens.
This function tells us the required number of tokens in the raw example (for split_tokens())
as well as the length of the encoded targets. Note that this function assumes
the inputs and targets will have EOS appended and includes that in the reported length.
Args:
inputs_length: an integer - desired length of the tokenized inputs sequence
noise_density: a float
mean_noise_span_length: a float
Returns:
tokens_length: length of original text in tokens
targets_length: an integer - length in tokens of encoded targets sequence
"""
def _tokens_length_to_inputs_length_targets_length(tokens_length):
num_noise_tokens = int(round(tokens_length * noise_density))
num_nonnoise_tokens = tokens_length - num_noise_tokens
num_noise_spans = int(round(num_noise_tokens / mean_noise_span_length))
# inputs contain all nonnoise tokens, sentinels for all noise spans
# and one EOS token.
_input_length = num_nonnoise_tokens + num_noise_spans + 1
_output_length = num_noise_tokens + num_noise_spans + 1
return _input_length, _output_length
tokens_length = inputs_length
while _tokens_length_to_inputs_length_targets_length(tokens_length + 1)[0] <= inputs_length:
tokens_length += 1
inputs_length, targets_length = _tokens_length_to_inputs_length_targets_length(tokens_length)
# minor hack to get the targets length to be equal to inputs length
# which is more likely to have been set to a nice round number.
if noise_density == 0.5 and targets_length > inputs_length:
tokens_length -= 1
targets_length -= 1
return tokens_length, targets_length
@flax.struct.dataclass
class FlaxDataCollatorForT5MLM:
"""
Data collator used for T5 span-masked language modeling.
It is made sure that after masking the inputs are of length `data_args.max_seq_length` and targets are also of fixed length.
For more information on how T5 span-masked language modeling works, one can take a look
at the `official paper <https://arxiv.org/pdf/1910.10683.pdf>`__
or the `official code for preprocessing <https://github.com/google-research/text-to-text-transfer-transformer/blob/master/t5/data/preprocessors.py>`__ .
Args:
tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
The tokenizer used for encoding the data.
noise_density (:obj:`float`):
The probability with which to (randomly) mask tokens in the input.
mean_noise_span_length (:obj:`float`):
The average span length of the masked tokens.
input_length (:obj:`int`):
The expected input length after masking.
target_length (:obj:`int`):
The expected target length after masking.
pad_token_id: (:obj:`int`):
The pad token id of the model
decoder_start_token_id: (:obj:`int):
The decoder start token id of the model
"""
tokenizer: PreTrainedTokenizerBase
noise_density: float
mean_noise_span_length: float
input_length: int
target_length: int
pad_token_id: int
decoder_start_token_id: int
def __call__(self, examples: List[Dict[str, np.ndarray]]) -> BatchEncoding:
# convert list to dict and tensorize input
batch = BatchEncoding(
{k: np.array([examples[i][k] for i in range(len(examples))]) for k, v in examples[0].items()}
)
input_ids = batch["input_ids"]
batch_size, expandend_input_length = input_ids.shape
mask_indices = np.asarray([self.random_spans_noise_mask(expandend_input_length) for i in range(batch_size)])
labels_mask = ~mask_indices
input_ids_sentinel = self.create_sentinel_ids(mask_indices.astype(np.int8))
labels_sentinel = self.create_sentinel_ids(labels_mask.astype(np.int8))
batch["input_ids"] = self.filter_input_ids(input_ids, input_ids_sentinel)
batch["labels"] = self.filter_input_ids(input_ids, labels_sentinel)
if batch["input_ids"].shape[-1] != self.input_length:
raise ValueError(
f"`input_ids` are incorrectly preprocessed. `input_ids` length is {batch['input_ids'].shape[-1]}, but"
f" should be {self.input_length}."
)
if batch["labels"].shape[-1] != self.target_length:
raise ValueError(
f"`labels` are incorrectly preprocessed. `labels` length is {batch['labels'].shape[-1]}, but should be"
f" {self.target_length}."
)
# to check that tokens are correctly preprocessed, one can run `self.tokenizer.batch_decode(input_ids)` and `self.tokenizer.batch_decode(labels)` here...
batch["decoder_input_ids"] = shift_tokens_right(
batch["labels"], self.pad_token_id, self.decoder_start_token_id
)
return batch
def create_sentinel_ids(self, mask_indices):
"""
Sentinel ids creation given the indices that should be masked.
The start indices of each mask are replaced by the sentinel ids in increasing
order. Consecutive mask indices to be deleted are replaced with `-1`.
"""
start_indices = mask_indices - np.roll(mask_indices, 1, axis=-1) * mask_indices
start_indices[:, 0] = mask_indices[:, 0]
sentinel_ids = np.where(start_indices != 0, np.cumsum(start_indices, axis=-1), start_indices)
sentinel_ids = np.where(sentinel_ids != 0, (len(self.tokenizer) - sentinel_ids), 0)
sentinel_ids -= mask_indices - start_indices
return sentinel_ids
def filter_input_ids(self, input_ids, sentinel_ids):
"""
Puts sentinel mask on `input_ids` and fuse consecutive mask tokens into a single mask token by deleting.
This will reduce the sequence length from `expanded_inputs_length` to `input_length`.
"""
batch_size = input_ids.shape[0]
input_ids_full = np.where(sentinel_ids != 0, sentinel_ids, input_ids)
# input_ids tokens and sentinel tokens are >= 0, tokens < 0 are
# masked tokens coming after sentinel tokens and should be removed
input_ids = input_ids_full[input_ids_full >= 0].reshape((batch_size, -1))
input_ids = np.concatenate(
[input_ids, np.full((batch_size, 1), self.tokenizer.eos_token_id, dtype=np.int32)], axis=-1
)
return input_ids
def random_spans_noise_mask(self, length):
"""This function is copy of `random_spans_helper <https://github.com/google-research/text-to-text-transfer-transformer/blob/84f8bcc14b5f2c03de51bd3587609ba8f6bbd1cd/t5/data/preprocessors.py#L2682>`__ .
Noise mask consisting of random spans of noise tokens.
The number of noise tokens and the number of noise spans and non-noise spans
are determined deterministically as follows:
num_noise_tokens = round(length * noise_density)
num_nonnoise_spans = num_noise_spans = round(num_noise_tokens / mean_noise_span_length)
Spans alternate between non-noise and noise, beginning with non-noise.
Subject to the above restrictions, all masks are equally likely.
Args:
length: an int32 scalar (length of the incoming token sequence)
noise_density: a float - approximate density of output mask
mean_noise_span_length: a number
Returns:
a boolean tensor with shape [length]
"""
orig_length = length
num_noise_tokens = int(np.round(length * self.noise_density))
num_nonnoise_tokens = length - num_noise_tokens
# avoid degeneracy by ensuring positive numbers of noise and nonnoise tokens.
num_noise_tokens = min(max(num_noise_tokens, 1), length - 1)
# num_noise_tokens should be less than num_noise_tokens and num_nonnoise_tokens
num_noise_spans = int(np.round(min(num_noise_tokens, num_nonnoise_tokens) / self.mean_noise_span_length))
# avoid degeneracy by ensuring positive number of noise spans
num_noise_spans = max(num_noise_spans, 1)
# pick the lengths of the noise spans and the non-noise spans
def _random_segmentation(num_items, num_segments):
"""Partition a sequence of items randomly into non-empty segments.
Args:
num_items: an integer scalar > 0
num_segments: an integer scalar in [1, num_items]
Returns:
a Tensor with shape [num_segments] containing positive integers that add
up to num_items
"""
mask_indices = np.arange(num_items - 1) < (num_segments - 1)
np.random.shuffle(mask_indices)
first_in_segment = np.pad(mask_indices, [[1, 0]])
segment_id = np.cumsum(first_in_segment)
# count length of sub segments assuming that list is sorted
_, segment_length = np.unique(segment_id, return_counts=True)
return segment_length
noise_span_lengths = _random_segmentation(num_noise_tokens, num_noise_spans)
nonnoise_span_lengths = _random_segmentation(num_nonnoise_tokens, num_noise_spans)
interleaved_span_lengths = np.reshape(
np.stack([nonnoise_span_lengths, noise_span_lengths], axis=1), [num_noise_spans * 2]
)
span_starts = np.cumsum(interleaved_span_lengths)[:-1]
span_start_indicator = np.zeros((length,), dtype=np.int8)
span_start_indicator[span_starts] = True
span_num = np.cumsum(span_start_indicator)
is_noise = np.equal(span_num % 2, 1)
return is_noise[:orig_length]
def generate_batch_splits(samples_idx: np.ndarray, batch_size: int, drop_last=True) -> np.ndarray:
"""Generate batches of data for a specified batch size from sample indices. If the dataset size is not divisible by
the batch size and `drop_last` is `True`, the last incomplete batch is dropped. Else, it is returned."""
num_samples = len(samples_idx)
if drop_last:
samples_to_remove = num_samples % batch_size
if samples_to_remove != 0:
samples_idx = samples_idx[:-samples_to_remove]
sections_split = num_samples // batch_size
samples_idx = samples_idx.reshape((sections_split, batch_size))
else:
sections_split = math.ceil(num_samples / batch_size)
samples_idx = np.array_split(samples_idx, sections_split)
return samples_idx
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_t5_mlm", model_args, data_args, framework="flax")
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
level=logging.INFO,
datefmt="[%X]",
)
# Log on each process the small summary:
logger = logging.getLogger(__name__)
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(
extension,
data_files=data_files,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
extension,
data_files=data_files,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
datasets["train"] = load_dataset(
extension,
data_files=data_files,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if model_args.config_name:
config = T5Config.from_pretrained(
model_args.config_name,
cache_dir=model_args.cache_dir,
vocab_size=len(tokenizer),
token=model_args.token,
)
elif model_args.model_name_or_path:
config = T5Config.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
# Otherwise, we tokenize every text, then concatenate them together before splitting them in smaller parts.
# Since we make sure that all sequences are of the same length, no attention_mask is needed.
def tokenize_function(examples):
return tokenizer(examples[text_column_name], return_attention_mask=False)
tokenized_datasets = datasets.map(
tokenize_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# T5-like span masked language modeling will fuse consecutively masked tokens to a single sentinel token.
# To ensure that the input length is `max_seq_length`, we need to increase the maximum length
# according to `mlm_probability` and `mean_noise_span_length`. We can also define the label length accordingly.
expanded_inputs_length, targets_length = compute_input_and_target_lengths(
inputs_length=max_seq_length,
noise_density=data_args.mlm_probability,
mean_noise_span_length=data_args.mean_noise_span_length,
)
# Main data processing function that will concatenate all texts from our dataset and generate chunks of expanded_inputs_length.
def group_texts(examples):
# Concatenate all texts.
concatenated_examples = {k: list(chain(*examples[k])) for k in examples.keys()}
total_length = len(concatenated_examples[list(examples.keys())[0]])
# We drop the small remainder, we could add padding if the model supported it instead of this drop, you can
# customize this part to your needs.
if total_length >= expanded_inputs_length:
total_length = (total_length // expanded_inputs_length) * expanded_inputs_length
# Split by chunks of max_len.
result = {
k: [t[i : i + expanded_inputs_length] for i in range(0, total_length, expanded_inputs_length)]
for k, t in concatenated_examples.items()
}
return result
# Note that with `batched=True`, this map processes 1,000 texts together, so group_texts throws away a
# remainder for each of those groups of 1,000 texts. You can adjust that batch_size here but a higher value
# might be slower to preprocess.
#
# To speed up this part, we use multiprocessing. See the documentation of the map method for more information:
# https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.map
tokenized_datasets = tokenized_datasets.map(
group_texts,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
if model_args.model_name_or_path:
model = FlaxT5ForConditionalGeneration.from_pretrained(
model_args.model_name_or_path,
config=config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
token=model_args.token,
)
else:
config.vocab_size = len(tokenizer)
model = FlaxT5ForConditionalGeneration(
config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
)
# Data collator
# This one will take care of randomly masking the tokens.
data_collator = FlaxDataCollatorForT5MLM(
tokenizer=tokenizer,
noise_density=data_args.mlm_probability,
mean_noise_span_length=data_args.mean_noise_span_length,
input_length=max_seq_length,
target_length=targets_length,
pad_token_id=model.config.pad_token_id,
decoder_start_token_id=model.config.decoder_start_token_id,
)
# Store some constant
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
num_train_steps = len(tokenized_datasets["train"]) // train_batch_size * num_epochs
num_of_hosts = jax.process_count()
current_host_idx = jax.process_index()
# Create learning rate schedule
warmup_fn = optax.linear_schedule(
init_value=0.0, end_value=training_args.learning_rate, transition_steps=training_args.warmup_steps
)
decay_fn = optax.linear_schedule(
init_value=training_args.learning_rate,
end_value=0,
transition_steps=num_train_steps - training_args.warmup_steps,
)
linear_decay_lr_schedule_fn = optax.join_schedules(
schedules=[warmup_fn, decay_fn], boundaries=[training_args.warmup_steps]
)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
# create adam optimizer
if training_args.adafactor:
# We use the default parameters here to initialize adafactor,
# For more details about the parameters please check https://github.com/deepmind/optax/blob/ed02befef9bf81cbbf236be3d2b0e032e9ed4a40/optax/_src/alias.py#L74
optimizer = optax.adafactor(
learning_rate=linear_decay_lr_schedule_fn,
)
else:
optimizer = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
# Setup train state
state = train_state.TrainState.create(apply_fn=model.__call__, params=model.params, tx=optimizer)
# Define gradient update step fn
def train_step(state, batch, dropout_rng):
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
def loss_fn(params):
labels = batch.pop("labels")
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
# compute loss
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1])).mean()
return loss
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad)
metrics = jax.lax.pmean(
{"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}, axis_name="batch"
)
return new_state, metrics, new_dropout_rng
# Create parallel version of the train step
p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
# Define eval fn
def eval_step(params, batch):
labels = batch.pop("labels")
logits = model(**batch, params=params, train=False)[0]
# compute loss
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1]))
# compute accuracy
accuracy = jnp.equal(jnp.argmax(logits, axis=-1), labels)
# summarize metrics
metrics = {"loss": loss.mean(), "accuracy": accuracy.mean()}
metrics = jax.lax.pmean(metrics, axis_name="batch")
return metrics
p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
# Replicate the train state on each device
state = jax_utils.replicate(state)
train_time = 0
epochs = tqdm(range(num_epochs), desc="Epoch ... ", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
train_metrics = []
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# Generate an epoch by shuffling sampling indices from the train dataset
num_train_samples = len(tokenized_datasets["train"])
# Avoid using jax.numpy here in case of TPU training
train_samples_idx = np.random.permutation(np.arange(num_train_samples))
train_batch_idx = generate_batch_splits(train_samples_idx, train_batch_size)
# Gather the indexes for creating the batch and do a training step
for step, batch_idx in enumerate(tqdm(train_batch_idx, desc="Training...", position=1)):
samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
local_host_model_inputs = {
key: np.split(model_inputs.data[key], num_of_hosts, axis=0)[current_host_idx]
for key, value in model_inputs.data.items()
}
# Model forward
model_inputs = shard(local_host_model_inputs)
state, train_metric, dropout_rngs = p_train_step(state, model_inputs, dropout_rngs)
train_metrics.append(train_metric)
cur_step = epoch * (num_train_samples // train_batch_size) + step
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = jax_utils.unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step} | Loss: {train_metric['loss'].mean()}, Learning Rate:"
f" {train_metric['learning_rate'].mean()})"
)
train_metrics = []
if cur_step % training_args.eval_steps == 0 and cur_step > 0:
# ======================== Evaluating ==============================
num_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size, drop_last=False)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, model_inputs.data, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# get eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.mean, eval_metrics)
# Update progress bar
epochs.write(f"Step... ({cur_step} | Loss: {eval_metrics['loss']}, Acc: {eval_metrics['accuracy']})")
# Save metrics
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metrics, cur_step)
if cur_step % training_args.save_steps == 0 and cur_step > 0:
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(jax.tree_util.tree_map(lambda x: x[0], state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
# Eval after training
if training_args.do_eval:
num_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size, drop_last=False)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, model_inputs.data, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# get eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(lambda metric: jnp.mean(metric).item(), eval_metrics)
if jax.process_index() == 0:
eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/language-modeling/run_t5_mlm_flax.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Pretraining the library models for denoising language modeling on a text file or a dataset.
Here is the full list of checkpoints on the hub that can be pretrained by this script:
https://huggingface.co/models?filter=bart
"""
# You can also adapt this script on your own denoising language modeling task. Pointers for this are left as comments.
import json
import logging
import math
import os
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from itertools import chain
from pathlib import Path
from typing import Dict, List, Optional
import flax
import jax
import jax.numpy as jnp
import nltk
import numpy as np
import optax
from datasets import load_dataset
from flax import jax_utils, traverse_util
from flax.jax_utils import pad_shard_unpad
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
from transformers import (
CONFIG_MAPPING,
FLAX_MODEL_FOR_MASKED_LM_MAPPING,
AutoTokenizer,
BartConfig,
BatchEncoding,
FlaxBartForConditionalGeneration,
HfArgumentParser,
PreTrainedTokenizerBase,
is_tensorboard_available,
set_seed,
)
from transformers.models.bart.modeling_flax_bart import shift_tokens_right
from transformers.utils import send_example_telemetry
MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization and masking. Sequences longer than this"
" will be truncated. Default to the max input length of the model."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.3, metadata={"help": "Ratio of tokens to mask for span masked language modeling loss"}
)
permute_sentence_ratio: float = field(
default=1.0, metadata={"help": "Ratio of sentences to be permuted in each document"}
)
poisson_lambda: float = field(
default=3.0, metadata={"help": "Mean of Poisson distribution used to generate span-lengths to be masked"}
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
if extension not in ["csv", "json", "txt"]:
raise ValueError("train_file` should be a csv, json or text file.")
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
if extension not in ["csv", "json", "txt"]:
raise ValueError("`validation_file` should be a csv, json or text file.")
@flax.struct.dataclass
class FlaxDataCollatorForBartDenoisingLM:
"""
Data collator used for BART denoising language modeling. The code is largely copied from
`<https://github.com/morganmcg1/rotobart/blob/main/data_collator.py#L223>`__.
For more information on how BART denoising language modeling works, one can take a look
at the `official paper <https://arxiv.org/pdf/1910.13461.pdf>`__
or the `official code for preprocessing <https://github.com/facebookresearch/fairseq/blob/main/fairseq/data/denoising_dataset.py>`__ .
Args:
tokenizer (:class:`~transformers.PreTrainedTokenizer` or :class:`~transformers.PreTrainedTokenizerFast`):
The tokenizer used for encoding the data
mask_ratio (:obj:`float`):
The probability with which to (randomly) mask tokens in the input
poisson_lambda (:obj:`float`):
Mean parameter of Poisson distribution used to generate span-lengths to be masked
permute_sentence_ratio (:obj:`float`):
Ratio of sentences to be permuted in each document
decoder_start_token_id: (:obj:`int):
The decoder start token id of the model
"""
tokenizer: PreTrainedTokenizerBase
decoder_start_token_id: int
mask_ratio: float = 0.3
poisson_lambda: float = 3.0
permute_sentence_ratio: float = 1.0
def __post_init__(self):
if self.tokenizer.mask_token is None or self.tokenizer.eos_token is None:
raise ValueError(
"This tokenizer does not have a mask token or eos token token which is necessary for denoising"
" language modeling. "
)
def __call__(self, examples: List[Dict[str, List[int]]]) -> BatchEncoding:
# convert list to dict and tensorize input
batch = BatchEncoding(
{k: np.array([examples[i][k] for i in range(len(examples))]) for k, v in examples[0].items()}
)
batch["labels"] = batch["input_ids"].copy()
batch["decoder_input_ids"] = shift_tokens_right(
batch["labels"], self.tokenizer.pad_token_id, self.decoder_start_token_id
)
# permuting sentences
do_permute = False
if self.permute_sentence_ratio > 0.0:
batch["input_ids"] = self.permute_sentences(batch["input_ids"])
do_permute = True
# masking span of tokens (text infilling in the paper)
if self.mask_ratio:
batch["input_ids"], batch["labels"] = self.span_mask_tokens(
batch["input_ids"], batch["labels"], do_permute
)
# ignore pad tokens
batch["attention_mask"] = (batch["input_ids"] != self.tokenizer.pad_token_id).astype(int)
batch["decoder_attention_mask"] = (batch["decoder_input_ids"] != self.tokenizer.pad_token_id).astype(int)
return batch
def permute_sentences(self, input_ids):
"""
Shuffle sentences in each document.
"""
results = input_ids.copy()
# find end locations of sentences
end_sentence_mask = input_ids == self.tokenizer.pad_token_id
sentence_ends = np.argwhere(end_sentence_mask)
sentence_ends[:, 1] += 1
example_has_multiple_sentences, num_sentences = np.unique(sentence_ends[:, 0], return_counts=True)
num_sentences_map = dict(zip(example_has_multiple_sentences, num_sentences))
num_to_permute = np.ceil(num_sentences * self.permute_sentence_ratio).astype(int)
num_to_permute_map = dict(zip(example_has_multiple_sentences, num_to_permute))
sentence_ends = np.split(sentence_ends[:, 1], np.unique(sentence_ends[:, 0], return_index=True)[1][1:])
sentence_ends_map = dict(zip(example_has_multiple_sentences, sentence_ends))
for i in range(input_ids.shape[0]):
if i not in example_has_multiple_sentences:
continue
substitutions = np.random.permutation(num_sentences_map[i])[: num_to_permute_map[i]]
ordering = np.arange(0, num_sentences_map[i])
ordering[substitutions] = substitutions[np.random.permutation(num_to_permute_map[i])]
# write shuffled sentences into results
index = 0
for j in ordering:
sentence = input_ids[i, (sentence_ends_map[i][j - 1] if j > 0 else 0) : sentence_ends_map[i][j]]
results[i, index : index + sentence.shape[0]] = sentence
index += sentence.shape[0]
return results
def span_mask_tokens(self, input_ids, labels, do_permute):
"""
Sampling text spans with span lengths drawn from a Poisson distribution and masking them.
"""
special_tokens_mask_labels = [
self.tokenizer.get_special_tokens_mask(val, already_has_special_tokens=True) for val in labels.tolist()
]
special_tokens_mask_inputs = [
self.tokenizer.get_special_tokens_mask(val, already_has_special_tokens=True) for val in input_ids.tolist()
]
special_tokens_mask_labels = np.array(special_tokens_mask_labels, dtype=bool)
special_tokens_mask_inputs = np.array(special_tokens_mask_inputs, dtype=bool)
# determine how many tokens we need to mask in total
is_token_mask = ~(input_ids == self.tokenizer.pad_token_id) & ~special_tokens_mask_inputs
num_tokens_to_mask = int(math.ceil(is_token_mask.astype(float).sum() * self.mask_ratio))
if num_tokens_to_mask == 0:
return input_ids, labels
# generate a sufficient number of span lengths
span_lengths = np.random.poisson(lam=self.poisson_lambda, size=(num_tokens_to_mask,))
while np.cumsum(span_lengths, 0)[-1] < num_tokens_to_mask:
span_lengths = np.concatenate(
[span_lengths, np.random.poisson(lam=self.poisson_lambda, size=(num_tokens_to_mask,))]
)
# remove all spans of length 0
# note that BART inserts additional mask tokens where length == 0,
# which we do not implement for now as it adds additional complexity
span_lengths = span_lengths[span_lengths > 0]
# trim to about num_tokens_to_mask tokens
cutoff_idx = np.argmin(np.abs(np.cumsum(span_lengths, 0) - num_tokens_to_mask)) + 1
span_lengths = span_lengths[:cutoff_idx]
# randomly choose starting positions for masking
token_indices = np.argwhere(is_token_mask == 1)
span_starts = np.random.permutation(token_indices.shape[0])[: span_lengths.shape[0]]
# prepare mask
masked_indices = np.array(token_indices[span_starts])
mask = np.full_like(input_ids, fill_value=False)
# mask starting positions
for mi in masked_indices:
mask[tuple(mi)] = True
span_lengths -= 1
# fill up spans
max_index = input_ids.shape[1] - 1
remaining = (span_lengths > 0) & (masked_indices[:, 1] < max_index)
while np.any(remaining):
masked_indices[remaining, 1] += 1
for mi in masked_indices:
mask[tuple(mi)] = True
span_lengths -= 1
remaining = (span_lengths > 0) & (masked_indices[:, 1] < max_index)
# place the mask tokens
mask[np.where(special_tokens_mask_inputs)] = False
input_ids[np.where(mask)] = self.tokenizer.mask_token_id
if not do_permute:
labels[np.where(mask == 0)] = -100
else:
labels[np.where(special_tokens_mask_labels)] = -100
# remove mask tokens that are not starts of spans
to_remove = (mask == 1) & np.roll((mask == 1), 1, 1)
new_input_ids = np.full_like(input_ids, fill_value=self.tokenizer.pad_token_id)
for i, example in enumerate(input_ids):
new_example = example[~to_remove[i]]
new_input_ids[i, : new_example.shape[0]] = new_example
return new_input_ids, labels
def generate_batch_splits(samples_idx: np.ndarray, batch_size: int, drop_last=True) -> np.ndarray:
"""Generate batches of data for a specified batch size from sample indices. If the dataset size is not divisible by
the batch size and `drop_last` is `True`, the last incomplete batch is dropped. Else, it is returned."""
num_samples = len(samples_idx)
if drop_last:
samples_to_remove = num_samples % batch_size
if samples_to_remove != 0:
samples_idx = samples_idx[:-samples_to_remove]
sections_split = num_samples // batch_size
samples_idx = samples_idx.reshape((sections_split, batch_size))
else:
sections_split = math.ceil(num_samples / batch_size)
samples_idx = np.array_split(samples_idx, sections_split)
return samples_idx
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_bart_dlm", model_args, data_args, framework="flax")
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
level=logging.INFO,
datefmt="[%X]",
)
# Log on each process the small summary:
logger = logging.getLogger(__name__)
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info(f"Training/evaluation parameters {training_args}")
# Set seed before initializing model.
set_seed(training_args.seed)
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(
extension,
data_files=data_files,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
extension,
data_files=data_files,
split=f"train[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
datasets["train"] = load_dataset(
extension,
data_files=data_files,
split=f"train[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.html.
# Load pretrained model and tokenizer
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=model_args.use_fast_tokenizer,
token=model_args.token,
)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script."
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if model_args.config_name:
config = BartConfig.from_pretrained(
model_args.config_name,
cache_dir=model_args.cache_dir,
vocab_size=len(tokenizer),
token=model_args.token,
)
elif model_args.model_name_or_path:
config = BartConfig.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
# Use Punkt Sentence Tokenizer to divide a document into a list of sentences
nltk.download("punkt")
sentence_tokenizer = nltk.data.load("tokenizers/punkt/english.pickle")
def sentence_split_function(example):
sents = sentence_tokenizer.tokenize(example["text"])
# use pad token as end of sentence indicator
new_text = tokenizer.bos_token + f"{tokenizer.pad_token}".join(sents) + tokenizer.eos_token
return {"text": new_text}
split_datasets = datasets.map(
sentence_split_function,
batched=False,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
)
# Tokenize every text, then concatenate them together before splitting them in smaller parts.
# Since we make sure that all sequences are of the same length, no attention_mask is needed.
def tokenize_function(examples):
return tokenizer(examples[text_column_name], add_special_tokens=False, return_attention_mask=False)
tokenized_datasets = split_datasets.map(
tokenize_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=text_column_name,
load_from_cache_file=not data_args.overwrite_cache,
)
# Main data processing function that will concatenate all texts from our dataset and generate chunks of
# max_seq_length.
def group_texts(examples):
# Concatenate all texts.
concatenated_examples = {k: list(chain(*examples[k])) for k in examples.keys()}
total_length = len(concatenated_examples[list(examples.keys())[0]])
# We drop the small remainder, we could add padding if the model supported it instead of this drop, you can
# customize this part to your needs.
if total_length >= max_seq_length:
total_length = (total_length // max_seq_length) * max_seq_length
# Split by chunks of max_len.
result = {
k: [t[i : i + max_seq_length] for i in range(0, total_length, max_seq_length)]
for k, t in concatenated_examples.items()
}
return result
# Note that with `batched=True`, this map processes 1,000 texts together, so group_texts throws away a
# remainder for each of those groups of 1,000 texts. You can adjust that batch_size here but a higher value
# might be slower to preprocess.
#
# To speed up this part, we use multiprocessing. See the documentation of the map method for more information:
# https://huggingface.co/docs/datasets/package_reference/main_classes.html#datasets.Dataset.map
tokenized_datasets = tokenized_datasets.map(
group_texts,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
if model_args.model_name_or_path:
model = FlaxBartForConditionalGeneration.from_pretrained(
model_args.model_name_or_path,
config=config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
token=model_args.token,
)
else:
config.vocab_size = len(tokenizer)
model = FlaxBartForConditionalGeneration(
config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
)
# Data collator
# This one will take care of randomly masking the tokens and permuting the sentences.
data_collator = FlaxDataCollatorForBartDenoisingLM(
tokenizer=tokenizer,
decoder_start_token_id=model.config.decoder_start_token_id,
mask_ratio=data_args.mlm_probability,
poisson_lambda=data_args.poisson_lambda,
permute_sentence_ratio=data_args.permute_sentence_ratio,
)
# Store some constant
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
num_train_steps = len(tokenized_datasets["train"]) // train_batch_size * num_epochs
# Create learning rate schedule
warmup_fn = optax.linear_schedule(
init_value=0.0, end_value=training_args.learning_rate, transition_steps=training_args.warmup_steps
)
decay_fn = optax.linear_schedule(
init_value=training_args.learning_rate,
end_value=0,
transition_steps=num_train_steps - training_args.warmup_steps,
)
linear_decay_lr_schedule_fn = optax.join_schedules(
schedules=[warmup_fn, decay_fn], boundaries=[training_args.warmup_steps]
)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
# create adam optimizer
if training_args.adafactor:
# We use the default parameters here to initialize adafactor,
# For more details about the parameters please check https://github.com/deepmind/optax/blob/ed02befef9bf81cbbf236be3d2b0e032e9ed4a40/optax/_src/alias.py#L74
optimizer = optax.adafactor(
learning_rate=linear_decay_lr_schedule_fn,
)
else:
optimizer = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
# Setup train state
state = train_state.TrainState.create(apply_fn=model.__call__, params=model.params, tx=optimizer)
# Define gradient update step fn
def train_step(state, batch, dropout_rng):
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
def loss_fn(params):
labels = batch.pop("labels")
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
# compute loss, ignore padded input tokens and special tokens
label_mask = jnp.where(labels > 0, 1.0, 0.0)
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1])) * label_mask
# take average
loss = loss.sum()
num_labels = label_mask.sum()
return loss, num_labels
grad_fn = jax.value_and_grad(loss_fn, has_aux=True)
(loss, num_labels), grad = grad_fn(state.params)
num_labels = jax.lax.psum(num_labels, "batch")
# true loss = total loss / total samples
loss = jax.lax.psum(loss, "batch")
loss = jax.tree_util.tree_map(lambda x: x / num_labels, loss)
# true grad = total grad / total samples
grad = jax.lax.psum(grad, "batch")
grad = jax.tree_util.tree_map(lambda x: x / num_labels, grad)
new_state = state.apply_gradients(grads=grad)
metrics = {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}
return new_state, metrics, new_dropout_rng
# Create parallel version of the train step
p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
# Define eval fn
def eval_step(params, batch):
labels = batch.pop("labels")
logits = model(**batch, params=params, train=False)[0]
# compute loss, ignore padded input tokens and special tokens
label_mask = jnp.where(labels > 0, 1.0, 0.0)
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1])) * label_mask
# compute accuracy
accuracy = jnp.equal(jnp.argmax(logits, axis=-1), labels) * label_mask
# summarize metrics
metrics = {"loss": loss.sum(), "accuracy": accuracy.sum(), "normalizer": label_mask.sum()}
metrics = jax.lax.psum(metrics, axis_name="batch")
return metrics
p_eval_step = jax.pmap(eval_step, "batch", donate_argnums=(0,))
# Replicate the train state on each device
state = jax_utils.replicate(state)
train_time = 0
epochs = tqdm(range(num_epochs), desc="Epoch ... ", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
train_metrics = []
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# Generate an epoch by shuffling sampling indices from the train dataset
num_train_samples = len(tokenized_datasets["train"])
# Avoid using jax.numpy here in case of TPU training
train_samples_idx = np.random.permutation(np.arange(num_train_samples))
train_batch_idx = generate_batch_splits(train_samples_idx, train_batch_size)
# Gather the indexes for creating the batch and do a training step
for step, batch_idx in enumerate(tqdm(train_batch_idx, desc="Training...", position=1)):
samples = [tokenized_datasets["train"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
# Model forward
model_inputs = shard(model_inputs.data)
state, train_metric, dropout_rngs = p_train_step(state, model_inputs, dropout_rngs)
train_metrics.append(train_metric)
cur_step = epoch * (num_train_samples // train_batch_size) + step
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = jax_utils.unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step} | Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
train_metrics = []
if cur_step % training_args.eval_steps == 0 and cur_step > 0:
# ======================== Evaluating ==============================
num_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
eval_metrics = []
for i, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, model_inputs.data, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.sum, eval_metrics)
eval_normalizer = eval_metrics.pop("normalizer")
eval_metrics = jax.tree_util.tree_map(lambda x: x / eval_normalizer, eval_metrics)
# Update progress bar
epochs.desc = f"Step... ({cur_step} | Loss: {eval_metrics['loss']}, Acc: {eval_metrics['accuracy']})"
# Save metrics
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metrics, cur_step)
if cur_step % training_args.save_steps == 0 and cur_step > 0:
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(jax.tree_util.tree_map(lambda x: x[0], state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
# Eval after training
if training_args.do_eval:
num_eval_samples = len(tokenized_datasets["validation"])
# Avoid using jax.numpy here in case of TPU training
eval_samples_idx = np.arange(num_eval_samples)
eval_batch_idx = generate_batch_splits(eval_samples_idx, eval_batch_size)
eval_metrics = []
for _, batch_idx in enumerate(tqdm(eval_batch_idx, desc="Evaluating ...", position=2)):
samples = [tokenized_datasets["validation"][int(idx)] for idx in batch_idx]
model_inputs = data_collator(samples)
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, model_inputs.data, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(lambda metric: jnp.sum(metric).item(), eval_metrics)
eval_normalizer = eval_metrics.pop("normalizer")
eval_metrics = jax.tree_util.tree_map(lambda x: x / eval_normalizer, eval_metrics)
try:
perplexity = math.exp(eval_metrics["loss"])
except OverflowError:
perplexity = float("inf")
eval_metrics["perplexity"] = perplexity
if jax.process_index() == 0:
eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/language-modeling/run_bart_dlm_flax.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Fine-tuning a 🤗 Flax Transformers model on token classification tasks (NER, POS, CHUNKS)"""
import json
import logging
import math
import os
import random
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from itertools import chain
from pathlib import Path
from typing import Any, Callable, Dict, Optional, Tuple
import datasets
import evaluate
import jax
import jax.numpy as jnp
import numpy as np
import optax
from datasets import ClassLabel, load_dataset
from flax import struct, traverse_util
from flax.jax_utils import pad_shard_unpad, replicate, unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
import transformers
from transformers import (
AutoConfig,
AutoTokenizer,
FlaxAutoModelForTokenClassification,
HfArgumentParser,
is_tensorboard_available,
)
from transformers.utils import check_min_version, send_example_telemetry
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.32.0.dev0")
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/token-classification/requirements.txt")
Array = Any
Dataset = datasets.arrow_dataset.Dataset
PRNGKey = Any
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
task_name: Optional[str] = field(default="ner", metadata={"help": "The name of the task (ner, pos...)."})
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a csv or JSON file)."}
)
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate on (a csv or JSON file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input test data file to predict on (a csv or JSON file)."},
)
text_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of text to input in the file (a csv or JSON file)."}
)
label_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of label to input in the file (a csv or JSON file)."}
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_seq_length: int = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization. If set, sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
label_all_tokens: bool = field(
default=False,
metadata={
"help": (
"Whether to put the label for one word on all tokens of generated by that word or just on the "
"one (in which case the other tokens will have a padding index)."
)
},
)
return_entity_level_metrics: bool = field(
default=False,
metadata={"help": "Whether to return all the entity levels during evaluation or just the overall ones."},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
self.task_name = self.task_name.lower()
def create_train_state(
model: FlaxAutoModelForTokenClassification,
learning_rate_fn: Callable[[int], float],
num_labels: int,
training_args: TrainingArguments,
) -> train_state.TrainState:
"""Create initial training state."""
class TrainState(train_state.TrainState):
"""Train state with an Optax optimizer.
The two functions below differ depending on whether the task is classification
or regression.
Args:
logits_fn: Applied to last layer to obtain the logits.
loss_fn: Function to compute the loss.
"""
logits_fn: Callable = struct.field(pytree_node=False)
loss_fn: Callable = struct.field(pytree_node=False)
# We use Optax's "masking" functionality to not apply weight decay
# to bias and LayerNorm scale parameters. decay_mask_fn returns a
# mask boolean with the same structure as the parameters.
# The mask is True for parameters that should be decayed.
def decay_mask_fn(params):
flat_params = traverse_util.flatten_dict(params)
# find out all LayerNorm parameters
layer_norm_candidates = ["layernorm", "layer_norm", "ln"]
layer_norm_named_params = {
layer[-2:]
for layer_norm_name in layer_norm_candidates
for layer in flat_params.keys()
if layer_norm_name in "".join(layer).lower()
}
flat_mask = {path: (path[-1] != "bias" and path[-2:] not in layer_norm_named_params) for path in flat_params}
return traverse_util.unflatten_dict(flat_mask)
tx = optax.adamw(
learning_rate=learning_rate_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
mask=decay_mask_fn,
)
def cross_entropy_loss(logits, labels):
xentropy = optax.softmax_cross_entropy(logits, onehot(labels, num_classes=num_labels))
return jnp.mean(xentropy)
return TrainState.create(
apply_fn=model.__call__,
params=model.params,
tx=tx,
logits_fn=lambda logits: logits.argmax(-1),
loss_fn=cross_entropy_loss,
)
def create_learning_rate_fn(
train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
"""Returns a linear warmup, linear_decay learning rate function."""
steps_per_epoch = train_ds_size // train_batch_size
num_train_steps = steps_per_epoch * num_train_epochs
warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
decay_fn = optax.linear_schedule(
init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
)
schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
return schedule_fn
def train_data_collator(rng: PRNGKey, dataset: Dataset, batch_size: int):
"""Returns shuffled batches of size `batch_size` from truncated `train dataset`, sharded over all local devices."""
steps_per_epoch = len(dataset) // batch_size
perms = jax.random.permutation(rng, len(dataset))
perms = perms[: steps_per_epoch * batch_size] # Skip incomplete batch.
perms = perms.reshape((steps_per_epoch, batch_size))
for perm in perms:
batch = dataset[perm]
batch = {k: np.array(v) for k, v in batch.items()}
batch = shard(batch)
yield batch
def eval_data_collator(dataset: Dataset, batch_size: int):
"""Returns batches of size `batch_size` from `eval dataset`. Sharding handled by `pad_shard_unpad` in the eval loop."""
batch_idx = np.arange(len(dataset))
steps_per_epoch = math.ceil(len(dataset) / batch_size)
batch_idx = np.array_split(batch_idx, steps_per_epoch)
for idx in batch_idx:
batch = dataset[idx]
batch = {k: np.array(v) for k, v in batch.items()}
yield batch
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_ner", model_args, data_args, framework="flax")
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
if jax.process_index() == 0:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets for token classification task available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'tokens' or the first column if no column called
# 'tokens' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
else:
# Loading the dataset from local csv or json file.
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = (data_args.train_file if data_args.train_file is not None else data_args.valid_file).split(".")[-1]
raw_datasets = load_dataset(
extension,
data_files=data_files,
cache_dir=model_args.cache_dir,
token=model_args.token,
)
# See more about loading any type of standard or custom dataset at
# https://huggingface.co/docs/datasets/loading_datasets.html.
if raw_datasets["train"] is not None:
column_names = raw_datasets["train"].column_names
features = raw_datasets["train"].features
else:
column_names = raw_datasets["validation"].column_names
features = raw_datasets["validation"].features
if data_args.text_column_name is not None:
text_column_name = data_args.text_column_name
elif "tokens" in column_names:
text_column_name = "tokens"
else:
text_column_name = column_names[0]
if data_args.label_column_name is not None:
label_column_name = data_args.label_column_name
elif f"{data_args.task_name}_tags" in column_names:
label_column_name = f"{data_args.task_name}_tags"
else:
label_column_name = column_names[1]
# In the event the labels are not a `Sequence[ClassLabel]`, we will need to go through the dataset to get the
# unique labels.
def get_label_list(labels):
unique_labels = set()
for label in labels:
unique_labels = unique_labels | set(label)
label_list = list(unique_labels)
label_list.sort()
return label_list
if isinstance(features[label_column_name].feature, ClassLabel):
label_list = features[label_column_name].feature.names
# No need to convert the labels since they are already ints.
label_to_id = {i: i for i in range(len(label_list))}
else:
label_list = get_label_list(raw_datasets["train"][label_column_name])
label_to_id = {l: i for i, l in enumerate(label_list)}
num_labels = len(label_list)
# Load pretrained model and tokenizer
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
label2id=label_to_id,
id2label={i: l for l, i in label_to_id.items()},
finetuning_task=data_args.task_name,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
tokenizer_name_or_path = model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path
if config.model_type in {"gpt2", "roberta"}:
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
add_prefix_space=True,
)
else:
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
model = FlaxAutoModelForTokenClassification.from_pretrained(
model_args.model_name_or_path,
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
# Preprocessing the datasets
# Tokenize all texts and align the labels with them.
def tokenize_and_align_labels(examples):
tokenized_inputs = tokenizer(
examples[text_column_name],
max_length=data_args.max_seq_length,
padding="max_length",
truncation=True,
# We use this argument because the texts in our dataset are lists of words (with a label for each word).
is_split_into_words=True,
)
labels = []
for i, label in enumerate(examples[label_column_name]):
word_ids = tokenized_inputs.word_ids(batch_index=i)
previous_word_idx = None
label_ids = []
for word_idx in word_ids:
# Special tokens have a word id that is None. We set the label to -100 so they are automatically
# ignored in the loss function.
if word_idx is None:
label_ids.append(-100)
# We set the label for the first token of each word.
elif word_idx != previous_word_idx:
label_ids.append(label_to_id[label[word_idx]])
# For the other tokens in a word, we set the label to either the current label or -100, depending on
# the label_all_tokens flag.
else:
label_ids.append(label_to_id[label[word_idx]] if data_args.label_all_tokens else -100)
previous_word_idx = word_idx
labels.append(label_ids)
tokenized_inputs["labels"] = labels
return tokenized_inputs
processed_raw_datasets = raw_datasets.map(
tokenize_and_align_labels,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
remove_columns=raw_datasets["train"].column_names,
desc="Running tokenizer on dataset",
)
train_dataset = processed_raw_datasets["train"]
eval_dataset = processed_raw_datasets["validation"]
# Log a few random samples from the training set:
for index in random.sample(range(len(train_dataset)), 3):
logger.info(f"Sample {index} of the training set: {train_dataset[index]}.")
# Define a summary writer
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(training_args.output_dir)
summary_writer.hparams({**training_args.to_dict(), **vars(model_args), **vars(data_args)})
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
def write_train_metric(summary_writer, train_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
def write_eval_metric(summary_writer, eval_metrics, step):
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
num_epochs = int(training_args.num_train_epochs)
rng = jax.random.PRNGKey(training_args.seed)
dropout_rngs = jax.random.split(rng, jax.local_device_count())
train_batch_size = training_args.per_device_train_batch_size * jax.local_device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = training_args.per_device_eval_batch_size * jax.local_device_count()
learning_rate_fn = create_learning_rate_fn(
len(train_dataset),
train_batch_size,
training_args.num_train_epochs,
training_args.warmup_steps,
training_args.learning_rate,
)
state = create_train_state(model, learning_rate_fn, num_labels=num_labels, training_args=training_args)
# define step functions
def train_step(
state: train_state.TrainState, batch: Dict[str, Array], dropout_rng: PRNGKey
) -> Tuple[train_state.TrainState, float]:
"""Trains model with an optimizer (both in `state`) on `batch`, returning a pair `(new_state, loss)`."""
dropout_rng, new_dropout_rng = jax.random.split(dropout_rng)
targets = batch.pop("labels")
def loss_fn(params):
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss = state.loss_fn(logits, targets)
return loss
grad_fn = jax.value_and_grad(loss_fn)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad)
metrics = jax.lax.pmean({"loss": loss, "learning_rate": learning_rate_fn(state.step)}, axis_name="batch")
return new_state, metrics, new_dropout_rng
p_train_step = jax.pmap(train_step, axis_name="batch", donate_argnums=(0,))
def eval_step(state, batch):
logits = state.apply_fn(**batch, params=state.params, train=False)[0]
return state.logits_fn(logits)
p_eval_step = jax.pmap(eval_step, axis_name="batch")
metric = evaluate.load("seqeval")
def get_labels(y_pred, y_true):
# Transform predictions and references tensos to numpy arrays
# Remove ignored index (special tokens)
true_predictions = [
[label_list[p] for (p, l) in zip(pred, gold_label) if l != -100]
for pred, gold_label in zip(y_pred, y_true)
]
true_labels = [
[label_list[l] for (p, l) in zip(pred, gold_label) if l != -100]
for pred, gold_label in zip(y_pred, y_true)
]
return true_predictions, true_labels
def compute_metrics():
results = metric.compute()
if data_args.return_entity_level_metrics:
# Unpack nested dictionaries
final_results = {}
for key, value in results.items():
if isinstance(value, dict):
for n, v in value.items():
final_results[f"{key}_{n}"] = v
else:
final_results[key] = value
return final_results
else:
return {
"precision": results["overall_precision"],
"recall": results["overall_recall"],
"f1": results["overall_f1"],
"accuracy": results["overall_accuracy"],
}
logger.info(f"===== Starting training ({num_epochs} epochs) =====")
train_time = 0
# make sure weights are replicated on each device
state = replicate(state)
train_time = 0
step_per_epoch = len(train_dataset) // train_batch_size
total_steps = step_per_epoch * num_epochs
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
for epoch in epochs:
train_start = time.time()
train_metrics = []
# Create sampling rng
rng, input_rng = jax.random.split(rng)
# train
for step, batch in enumerate(
tqdm(
train_data_collator(input_rng, train_dataset, train_batch_size),
total=step_per_epoch,
desc="Training...",
position=1,
)
):
state, train_metric, dropout_rngs = p_train_step(state, batch, dropout_rngs)
train_metrics.append(train_metric)
cur_step = (epoch * step_per_epoch) + (step + 1)
if cur_step % training_args.logging_steps == 0 and cur_step > 0:
# Save metrics
train_metric = unreplicate(train_metric)
train_time += time.time() - train_start
if has_tensorboard and jax.process_index() == 0:
write_train_metric(summary_writer, train_metrics, train_time, cur_step)
epochs.write(
f"Step... ({cur_step}/{total_steps} | Training Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
train_metrics = []
if cur_step % training_args.eval_steps == 0 and cur_step > 0:
eval_metrics = {}
# evaluate
for batch in tqdm(
eval_data_collator(eval_dataset, eval_batch_size),
total=math.ceil(len(eval_dataset) / eval_batch_size),
desc="Evaluating ...",
position=2,
):
labels = batch.pop("labels")
predictions = pad_shard_unpad(p_eval_step)(
state, batch, min_device_batch=per_device_eval_batch_size
)
predictions = np.array(predictions)
labels[np.array(chain(*batch["attention_mask"])) == 0] = -100
preds, refs = get_labels(predictions, labels)
metric.add_batch(
predictions=preds,
references=refs,
)
eval_metrics = compute_metrics()
if data_args.return_entity_level_metrics:
logger.info(f"Step... ({cur_step}/{total_steps} | Validation metrics: {eval_metrics}")
else:
logger.info(
f"Step... ({cur_step}/{total_steps} | Validation f1: {eval_metrics['f1']}, Validation Acc:"
f" {eval_metrics['accuracy']})"
)
if has_tensorboard and jax.process_index() == 0:
write_eval_metric(summary_writer, eval_metrics, cur_step)
if (cur_step % training_args.save_steps == 0 and cur_step > 0) or (cur_step == total_steps):
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(unreplicate(state.params))
model.save_pretrained(training_args.output_dir, params=params)
tokenizer.save_pretrained(training_args.output_dir)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of step {cur_step}", blocking=False)
epochs.desc = f"Epoch ... {epoch + 1}/{num_epochs}"
# Eval after training
if training_args.do_eval:
eval_metrics = {}
eval_loader = eval_data_collator(eval_dataset, eval_batch_size)
for batch in tqdm(eval_loader, total=len(eval_dataset) // eval_batch_size, desc="Evaluating ...", position=2):
labels = batch.pop("labels")
predictions = pad_shard_unpad(p_eval_step)(state, batch, min_device_batch=per_device_eval_batch_size)
predictions = np.array(predictions)
labels[np.array(chain(*batch["attention_mask"])) == 0] = -100
preds, refs = get_labels(predictions, labels)
metric.add_batch(predictions=preds, references=refs)
eval_metrics = compute_metrics()
if jax.process_index() == 0:
eval_metrics = {f"eval_{metric_name}": value for metric_name, value in eval_metrics.items()}
path = os.path.join(training_args.output_dir, "eval_results.json")
with open(path, "w") as f:
json.dump(eval_metrics, f, indent=4, sort_keys=True)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/token-classification/run_flax_ner.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Pre-training/Fine-tuning ViT for image classification .
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=vit
"""
import logging
import os
import sys
import time
import warnings
from dataclasses import asdict, dataclass, field
from enum import Enum
from pathlib import Path
from typing import Callable, Optional
import jax
import jax.numpy as jnp
import optax
# for dataset and preprocessing
import torch
import torchvision
import torchvision.transforms as transforms
from flax import jax_utils
from flax.jax_utils import pad_shard_unpad, unreplicate
from flax.training import train_state
from flax.training.common_utils import get_metrics, onehot, shard, shard_prng_key
from huggingface_hub import Repository, create_repo
from tqdm import tqdm
import transformers
from transformers import (
CONFIG_MAPPING,
FLAX_MODEL_FOR_IMAGE_CLASSIFICATION_MAPPING,
AutoConfig,
FlaxAutoModelForImageClassification,
HfArgumentParser,
is_tensorboard_available,
set_seed,
)
from transformers.utils import send_example_telemetry
logger = logging.getLogger(__name__)
MODEL_CONFIG_CLASSES = list(FLAX_MODEL_FOR_IMAGE_CLASSIFICATION_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class TrainingArguments:
output_dir: str = field(
metadata={"help": "The output directory where the model predictions and checkpoints will be written."},
)
overwrite_output_dir: bool = field(
default=False,
metadata={
"help": (
"Overwrite the content of the output directory. "
"Use this to continue training if output_dir points to a checkpoint directory."
)
},
)
do_train: bool = field(default=False, metadata={"help": "Whether to run training."})
do_eval: bool = field(default=False, metadata={"help": "Whether to run eval on the dev set."})
per_device_train_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for training."}
)
per_device_eval_batch_size: int = field(
default=8, metadata={"help": "Batch size per GPU/TPU core/CPU for evaluation."}
)
learning_rate: float = field(default=5e-5, metadata={"help": "The initial learning rate for AdamW."})
weight_decay: float = field(default=0.0, metadata={"help": "Weight decay for AdamW if we apply some."})
adam_beta1: float = field(default=0.9, metadata={"help": "Beta1 for AdamW optimizer"})
adam_beta2: float = field(default=0.999, metadata={"help": "Beta2 for AdamW optimizer"})
adam_epsilon: float = field(default=1e-8, metadata={"help": "Epsilon for AdamW optimizer."})
adafactor: bool = field(default=False, metadata={"help": "Whether or not to replace AdamW by Adafactor."})
num_train_epochs: float = field(default=3.0, metadata={"help": "Total number of training epochs to perform."})
warmup_steps: int = field(default=0, metadata={"help": "Linear warmup over warmup_steps."})
logging_steps: int = field(default=500, metadata={"help": "Log every X updates steps."})
save_steps: int = field(default=500, metadata={"help": "Save checkpoint every X updates steps."})
eval_steps: int = field(default=None, metadata={"help": "Run an evaluation every X steps."})
seed: int = field(default=42, metadata={"help": "Random seed that will be set at the beginning of training."})
push_to_hub: bool = field(
default=False, metadata={"help": "Whether or not to upload the trained model to the model hub after training."}
)
hub_model_id: str = field(
default=None, metadata={"help": "The name of the repository to keep in sync with the local `output_dir`."}
)
hub_token: str = field(default=None, metadata={"help": "The token to use to push to the Model Hub."})
def __post_init__(self):
if self.output_dir is not None:
self.output_dir = os.path.expanduser(self.output_dir)
def to_dict(self):
"""
Serializes this instance while replace `Enum` by their values (for JSON serialization support). It obfuscates
the token values by removing their value.
"""
d = asdict(self)
for k, v in d.items():
if isinstance(v, Enum):
d[k] = v.value
if isinstance(v, list) and len(v) > 0 and isinstance(v[0], Enum):
d[k] = [x.value for x in v]
if k.endswith("_token"):
d[k] = f"<{k.upper()}>"
return d
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization.Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
)
dtype: Optional[str] = field(
default="float32",
metadata={
"help": (
"Floating-point format in which the model weights should be initialized and trained. Choose one of"
" `[float32, float16, bfloat16]`."
)
},
)
token: str = field(
default=None,
metadata={
"help": (
"The token to use as HTTP bearer authorization for remote files. If not specified, will use the token "
"generated when running `huggingface-cli login` (stored in `~/.huggingface`)."
)
},
)
use_auth_token: bool = field(
default=None,
metadata={
"help": "The `use_auth_token` argument is deprecated and will be removed in v4.34. Please use `token`."
},
)
trust_remote_code: bool = field(
default=False,
metadata={
"help": (
"Whether or not to allow for custom models defined on the Hub in their own modeling files. This option"
"should only be set to `True` for repositories you trust and in which you have read the code, as it will"
"execute code present on the Hub on your local machine."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
train_dir: str = field(
metadata={"help": "Path to the root training directory which contains one subdirectory per class."}
)
validation_dir: str = field(
metadata={"help": "Path to the root validation directory which contains one subdirectory per class."},
)
image_size: Optional[int] = field(default=224, metadata={"help": " The size (resolution) of each image."})
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
class TrainState(train_state.TrainState):
dropout_rng: jnp.ndarray
def replicate(self):
return jax_utils.replicate(self).replace(dropout_rng=shard_prng_key(self.dropout_rng))
def write_metric(summary_writer, train_metrics, eval_metrics, train_time, step):
summary_writer.scalar("train_time", train_time, step)
train_metrics = get_metrics(train_metrics)
for key, vals in train_metrics.items():
tag = f"train_{key}"
for i, val in enumerate(vals):
summary_writer.scalar(tag, val, step - len(vals) + i + 1)
for metric_name, value in eval_metrics.items():
summary_writer.scalar(f"eval_{metric_name}", value, step)
def create_learning_rate_fn(
train_ds_size: int, train_batch_size: int, num_train_epochs: int, num_warmup_steps: int, learning_rate: float
) -> Callable[[int], jnp.array]:
"""Returns a linear warmup, linear_decay learning rate function."""
steps_per_epoch = train_ds_size // train_batch_size
num_train_steps = steps_per_epoch * num_train_epochs
warmup_fn = optax.linear_schedule(init_value=0.0, end_value=learning_rate, transition_steps=num_warmup_steps)
decay_fn = optax.linear_schedule(
init_value=learning_rate, end_value=0, transition_steps=num_train_steps - num_warmup_steps
)
schedule_fn = optax.join_schedules(schedules=[warmup_fn, decay_fn], boundaries=[num_warmup_steps])
return schedule_fn
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
if model_args.use_auth_token is not None:
warnings.warn("The `use_auth_token` argument is deprecated and will be removed in v4.34.", FutureWarning)
if model_args.token is not None:
raise ValueError("`token` and `use_auth_token` are both specified. Please set only the argument `token`.")
model_args.token = model_args.use_auth_token
# Sending telemetry. Tracking the example usage helps us better allocate resources to maintain them. The
# information sent is the one passed as arguments along with your Python/PyTorch versions.
send_example_telemetry("run_image_classification", model_args, data_args, framework="flax")
if (
os.path.exists(training_args.output_dir)
and os.listdir(training_args.output_dir)
and training_args.do_train
and not training_args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty."
"Use --overwrite_output_dir to overcome."
)
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
logger.setLevel(logging.INFO if jax.process_index() == 0 else logging.ERROR)
if jax.process_index() == 0:
transformers.utils.logging.set_verbosity_info()
else:
transformers.utils.logging.set_verbosity_error()
# Set the verbosity to info of the Transformers logger (on main process only):
logger.info(f"Training/evaluation parameters {training_args}")
# set seed for random transforms and torch dataloaders
set_seed(training_args.seed)
# Handle the repository creation
if training_args.push_to_hub:
# Retrieve of infer repo_name
repo_name = training_args.hub_model_id
if repo_name is None:
repo_name = Path(training_args.output_dir).absolute().name
# Create repo and retrieve repo_id
repo_id = create_repo(repo_name, exist_ok=True, token=training_args.hub_token).repo_id
# Clone repo locally
repo = Repository(training_args.output_dir, clone_from=repo_id, token=training_args.hub_token)
# Initialize datasets and pre-processing transforms
# We use torchvision here for faster pre-processing
# Note that here we are using some default pre-processing, for maximum accuray
# one should tune this part and carefully select what transformations to use.
normalize = transforms.Normalize(mean=[0.5, 0.5, 0.5], std=[0.5, 0.5, 0.5])
train_dataset = torchvision.datasets.ImageFolder(
data_args.train_dir,
transforms.Compose(
[
transforms.RandomResizedCrop(data_args.image_size),
transforms.RandomHorizontalFlip(),
transforms.ToTensor(),
normalize,
]
),
)
eval_dataset = torchvision.datasets.ImageFolder(
data_args.validation_dir,
transforms.Compose(
[
transforms.Resize(data_args.image_size),
transforms.CenterCrop(data_args.image_size),
transforms.ToTensor(),
normalize,
]
),
)
# Load pretrained model and tokenizer
if model_args.config_name:
config = AutoConfig.from_pretrained(
model_args.config_name,
num_labels=len(train_dataset.classes),
image_size=data_args.image_size,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(
model_args.model_name_or_path,
num_labels=len(train_dataset.classes),
image_size=data_args.image_size,
cache_dir=model_args.cache_dir,
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.model_name_or_path:
model = FlaxAutoModelForImageClassification.from_pretrained(
model_args.model_name_or_path,
config=config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
token=model_args.token,
trust_remote_code=model_args.trust_remote_code,
)
else:
model = FlaxAutoModelForImageClassification.from_config(
config,
seed=training_args.seed,
dtype=getattr(jnp, model_args.dtype),
trust_remote_code=model_args.trust_remote_code,
)
# Store some constant
num_epochs = int(training_args.num_train_epochs)
train_batch_size = int(training_args.per_device_train_batch_size) * jax.device_count()
per_device_eval_batch_size = int(training_args.per_device_eval_batch_size)
eval_batch_size = per_device_eval_batch_size * jax.device_count()
steps_per_epoch = len(train_dataset) // train_batch_size
total_train_steps = steps_per_epoch * num_epochs
def collate_fn(examples):
pixel_values = torch.stack([example[0] for example in examples])
labels = torch.tensor([example[1] for example in examples])
batch = {"pixel_values": pixel_values, "labels": labels}
batch = {k: v.numpy() for k, v in batch.items()}
return batch
# Create data loaders
train_loader = torch.utils.data.DataLoader(
train_dataset,
batch_size=train_batch_size,
shuffle=True,
num_workers=data_args.preprocessing_num_workers,
persistent_workers=True,
drop_last=True,
collate_fn=collate_fn,
)
eval_loader = torch.utils.data.DataLoader(
eval_dataset,
batch_size=eval_batch_size,
shuffle=False,
num_workers=data_args.preprocessing_num_workers,
persistent_workers=True,
drop_last=False,
collate_fn=collate_fn,
)
# Enable tensorboard only on the master node
has_tensorboard = is_tensorboard_available()
if has_tensorboard and jax.process_index() == 0:
try:
from flax.metrics.tensorboard import SummaryWriter
summary_writer = SummaryWriter(log_dir=Path(training_args.output_dir))
except ImportError as ie:
has_tensorboard = False
logger.warning(
f"Unable to display metrics through TensorBoard because some package are not installed: {ie}"
)
else:
logger.warning(
"Unable to display metrics through TensorBoard because the package is not installed: "
"Please run pip install tensorboard to enable."
)
# Initialize our training
rng = jax.random.PRNGKey(training_args.seed)
rng, dropout_rng = jax.random.split(rng)
# Create learning rate schedule
linear_decay_lr_schedule_fn = create_learning_rate_fn(
len(train_dataset),
train_batch_size,
training_args.num_train_epochs,
training_args.warmup_steps,
training_args.learning_rate,
)
# create adam optimizer
adamw = optax.adamw(
learning_rate=linear_decay_lr_schedule_fn,
b1=training_args.adam_beta1,
b2=training_args.adam_beta2,
eps=training_args.adam_epsilon,
weight_decay=training_args.weight_decay,
)
# Setup train state
state = TrainState.create(apply_fn=model.__call__, params=model.params, tx=adamw, dropout_rng=dropout_rng)
def loss_fn(logits, labels):
loss = optax.softmax_cross_entropy(logits, onehot(labels, logits.shape[-1]))
return loss.mean()
# Define gradient update step fn
def train_step(state, batch):
dropout_rng, new_dropout_rng = jax.random.split(state.dropout_rng)
def compute_loss(params):
labels = batch.pop("labels")
logits = state.apply_fn(**batch, params=params, dropout_rng=dropout_rng, train=True)[0]
loss = loss_fn(logits, labels)
return loss
grad_fn = jax.value_and_grad(compute_loss)
loss, grad = grad_fn(state.params)
grad = jax.lax.pmean(grad, "batch")
new_state = state.apply_gradients(grads=grad, dropout_rng=new_dropout_rng)
metrics = {"loss": loss, "learning_rate": linear_decay_lr_schedule_fn(state.step)}
metrics = jax.lax.pmean(metrics, axis_name="batch")
return new_state, metrics
# Define eval fn
def eval_step(params, batch):
labels = batch.pop("labels")
logits = model(**batch, params=params, train=False)[0]
loss = loss_fn(logits, labels)
# summarize metrics
accuracy = (jnp.argmax(logits, axis=-1) == labels).mean()
metrics = {"loss": loss, "accuracy": accuracy}
metrics = jax.lax.pmean(metrics, axis_name="batch")
return metrics
# Create parallel version of the train and eval step
p_train_step = jax.pmap(train_step, "batch", donate_argnums=(0,))
p_eval_step = jax.pmap(eval_step, "batch")
# Replicate the train state on each device
state = state.replicate()
logger.info("***** Running training *****")
logger.info(f" Num examples = {len(train_dataset)}")
logger.info(f" Num Epochs = {num_epochs}")
logger.info(f" Instantaneous batch size per device = {training_args.per_device_train_batch_size}")
logger.info(f" Total train batch size (w. parallel & distributed) = {train_batch_size}")
logger.info(f" Total optimization steps = {total_train_steps}")
train_time = 0
epochs = tqdm(range(num_epochs), desc=f"Epoch ... (1/{num_epochs})", position=0)
for epoch in epochs:
# ======================== Training ================================
train_start = time.time()
# Create sampling rng
rng, input_rng = jax.random.split(rng)
train_metrics = []
steps_per_epoch = len(train_dataset) // train_batch_size
train_step_progress_bar = tqdm(total=steps_per_epoch, desc="Training...", position=1, leave=False)
# train
for batch in train_loader:
batch = shard(batch)
state, train_metric = p_train_step(state, batch)
train_metrics.append(train_metric)
train_step_progress_bar.update(1)
train_time += time.time() - train_start
train_metric = unreplicate(train_metric)
train_step_progress_bar.close()
epochs.write(
f"Epoch... ({epoch + 1}/{num_epochs} | Loss: {train_metric['loss']}, Learning Rate:"
f" {train_metric['learning_rate']})"
)
# ======================== Evaluating ==============================
eval_metrics = []
eval_steps = len(eval_dataset) // eval_batch_size
eval_step_progress_bar = tqdm(total=eval_steps, desc="Evaluating...", position=2, leave=False)
for batch in eval_loader:
# Model forward
metrics = pad_shard_unpad(p_eval_step, static_return=True)(
state.params, batch, min_device_batch=per_device_eval_batch_size
)
eval_metrics.append(metrics)
eval_step_progress_bar.update(1)
# normalize eval metrics
eval_metrics = get_metrics(eval_metrics)
eval_metrics = jax.tree_util.tree_map(jnp.mean, eval_metrics)
# Print metrics and update progress bar
eval_step_progress_bar.close()
desc = (
f"Epoch... ({epoch + 1}/{num_epochs} | Eval Loss: {round(eval_metrics['loss'].item(), 4)} | "
f"Eval Accuracy: {round(eval_metrics['accuracy'].item(), 4)})"
)
epochs.write(desc)
epochs.desc = desc
# Save metrics
if has_tensorboard and jax.process_index() == 0:
cur_step = epoch * (len(train_dataset) // train_batch_size)
write_metric(summary_writer, train_metrics, eval_metrics, train_time, cur_step)
# save checkpoint after each epoch and push checkpoint to the hub
if jax.process_index() == 0:
params = jax.device_get(jax.tree_util.tree_map(lambda x: x[0], state.params))
model.save_pretrained(training_args.output_dir, params=params)
if training_args.push_to_hub:
repo.push_to_hub(commit_message=f"Saving weights and logs of epoch {epoch}", blocking=False)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/vision/run_image_classification.py |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Create a VisionEncoderDecoderModel instance from pretrained encoder/decoder models.
The cross-attention will be randomly initialized.
"""
from dataclasses import dataclass, field
from typing import Optional
from transformers import AutoConfig, AutoImageProcessor, AutoTokenizer, FlaxVisionEncoderDecoderModel, HfArgumentParser
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
output_dir: str = field(
metadata={"help": "The output directory where the model will be written."},
)
encoder_model_name_or_path: str = field(
metadata={
"help": (
"The encoder model checkpoint for weights initialization."
"Don't set if you want to train an encoder model from scratch."
)
},
)
decoder_model_name_or_path: str = field(
metadata={
"help": (
"The decoder model checkpoint for weights initialization."
"Don't set if you want to train a decoder model from scratch."
)
},
)
encoder_config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained encoder config name or path if not the same as encoder_model_name"}
)
decoder_config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained decoder config name or path if not the same as decoder_model_name"}
)
def main():
parser = HfArgumentParser((ModelArguments,))
(model_args,) = parser.parse_args_into_dataclasses()
# Load pretrained model and tokenizer
# Use explicit specified encoder config
if model_args.encoder_config_name:
encoder_config = AutoConfig.from_pretrained(model_args.encoder_config_name)
# Use pretrained encoder model's config
else:
encoder_config = AutoConfig.from_pretrained(model_args.encoder_model_name_or_path)
# Use explicit specified decoder config
if model_args.decoder_config_name:
decoder_config = AutoConfig.from_pretrained(model_args.decoder_config_name)
# Use pretrained decoder model's config
else:
decoder_config = AutoConfig.from_pretrained(model_args.decoder_model_name_or_path)
# necessary for `from_encoder_decoder_pretrained` when `decoder_config` is passed
decoder_config.is_decoder = True
decoder_config.add_cross_attention = True
model = FlaxVisionEncoderDecoderModel.from_encoder_decoder_pretrained(
encoder_pretrained_model_name_or_path=model_args.encoder_model_name_or_path,
decoder_pretrained_model_name_or_path=model_args.decoder_model_name_or_path,
encoder_config=encoder_config,
decoder_config=decoder_config,
)
# GPT2 only has bos/eos tokens but not decoder_start/pad tokens
decoder_start_token_id = decoder_config.decoder_start_token_id
pad_token_id = decoder_config.pad_token_id
if decoder_start_token_id is None:
decoder_start_token_id = decoder_config.bos_token_id
if pad_token_id is None:
pad_token_id = decoder_config.eos_token_id
# This is necessary to make Flax's generate() work
model.config.eos_token_id = decoder_config.eos_token_id
model.config.decoder_start_token_id = decoder_start_token_id
model.config.pad_token_id = pad_token_id
image_processor = AutoImageProcessor.from_pretrained(model_args.encoder_model_name_or_path)
tokenizer = AutoTokenizer.from_pretrained(model_args.decoder_model_name_or_path)
tokenizer.pad_token = tokenizer.convert_ids_to_tokens(model.config.pad_token_id)
model.save_pretrained(model_args.output_dir)
image_processor.save_pretrained(model_args.output_dir)
tokenizer.save_pretrained(model_args.output_dir)
if __name__ == "__main__":
main()
| transformers-main | examples/flax/image-captioning/create_model_from_encoder_decoder_models.py |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.