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| title: Medical AI Wiki | |
| emoji: 🔬 | |
| colorFrom: blue | |
| colorTo: purple | |
| sdk: docker | |
| app_port: 3001 | |
| # Medical AI Wiki | |
| A web application that helps users explore AI algorithms used in medical research papers from PubMed. | |
| ## Features | |
| - **Dashboard**: View statistics and trends of AI algorithms used in medical papers | |
| - **Algorithm Search**: Search for specific medical problems and see which algorithms are most commonly used | |
| - **Interactive Charts**: Visual representation of algorithm usage and distribution | |
| - **PubMed Integration**: Direct links to relevant papers on PubMed | |
| - **Editable Algorithm Database**: JSON-based configuration for easy algorithm management | |
| ## Tech Stack | |
| - **Frontend**: React + TypeScript + Vite + Tailwind CSS | |
| - **Backend**: Node.js + Express | |
| - **Charts**: Recharts | |
| - **API**: PubMed E-utilities | |
| - **Icons**: Lucide React | |
| ## Installation | |
| 1. Install dependencies for all parts: | |
| ```bash | |
| npm run install:all | |
| ``` | |
| 2. Start the development server: | |
| ```bash | |
| npm run dev | |
| ``` | |
| This will start both the backend (port 3001) and frontend (port 3000) concurrently. | |
| ## Usage | |
| 1. **Dashboard**: Visit the homepage to see overall statistics of AI algorithms in medical research | |
| 2. **Search**: Use the search page to find algorithms used for specific medical problems | |
| 3. **Algorithm Management**: Edit `/data/algorithms.json` to add, remove, or modify algorithms and their synonyms | |
| ## Algorithm Configuration | |
| The algorithms are configured in `/data/algorithms.json`. Each algorithm has: | |
| - `name`: Display name | |
| - `category`: Either "classical_ml" or "deep_learning" | |
| - `description`: Brief description of the algorithm | |
| - `synonyms`: Array of terms used to search PubMed (includes variations, abbreviations, etc.) | |
| ## API Endpoints | |
| - `GET /api/algorithms` - Get all algorithms | |
| - `PUT /api/algorithms` - Update algorithms configuration | |
| - `GET /api/search/dashboard-stats` - Get dashboard statistics | |
| - `POST /api/search/problem` - Search algorithms for a specific problem | |
| - `GET /api/search/pubmed-link` - Generate PubMed search URL | |
| - `GET /api/pubmed/search` - Search PubMed papers | |
| - `GET /api/pubmed/paper/:pmid` - Get specific paper details | |
| ## Development | |
| - Backend runs on port 3001 | |
| - Frontend runs on port 3000 with proxy to backend | |
| - Hot reload enabled for both frontend and backend |