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1085d0c6_pt__GLRX_002__ENST00000379979___Biotype
|
[Name] GLRX-007 [Transcript ID] ENST00000508780 [bp] 533 [Protein] 106aa [Translation ID] ENSP00000422708 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-002 (ENST00000379979)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813971-95822714;t=ENST00000379979
|
5/1438042987135.9_20150728002307-00222-ip-10-236-191-2_426772567_0.json
|
1085d0c6_pt__GLRX_002__ENST00000379979___Biotype
|
[Name] GLRX-005 [Transcript ID] ENST00000512469 [bp] 473 [Protein] 106aa [Translation ID] ENSP00000424636 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-002 (ENST00000379979)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813971-95822714;t=ENST00000379979
|
5/1438042987135.9_20150728002307-00222-ip-10-236-191-2_426772567_0.json
|
1085d0c6_pt__GLRX_002__ENST00000379979___Biotype
|
[Name] GLRX-006 [Transcript ID] ENST00000507605 [bp] 1734 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-002 (ENST00000379979)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813971-95822714;t=ENST00000379979
|
5/1438042987135.9_20150728002307-00222-ip-10-236-191-2_426772567_0.json
|
1085d0c6_pt__GLRX_002__ENST00000379979___Biotype
|
[Name] GLRX-003 [Transcript ID] ENST00000507412 [bp] 3407 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-002 (ENST00000379979)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813971-95822714;t=ENST00000379979
|
5/1438042987135.9_20150728002307-00222-ip-10-236-191-2_426772567_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-001 [Transcript ID] ENST00000389301 [bp] 5451 [Protein] 1455aa [Translation ID] ENSP00000373952 [CCDS] CCDS32515 [UniProt] O15360 [RefSeq] NM_000135 NP_000126 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-002 [Transcript ID] ENST00000568369 [bp] 4601 [Protein] 1424aa [Translation ID] ENSP00000456829 [CCDS] CCDS67099 [UniProt] O15360 [RefSeq] NM_001286167 NP_001273096 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-003 [Transcript ID] ENST00000389302 [bp] 1641 [Protein] 297aa [Translation ID] ENSP00000373953 [CCDS] CCDS42221 [UniProt] O15360 [RefSeq] NM_001018112 NP_001018122 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-006 [Transcript ID] ENST00000563673 [bp] 1694 [Protein] 316aa [Translation ID] ENSP00000456443 [CCDS] - [UniProt] H3BRX3 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-201 [Transcript ID] ENST00000534992 [bp] 1088 [Protein] 302aa [Translation ID] ENSP00000443675 [CCDS] - [UniProt] F5H8D5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-004 [Transcript ID] ENST00000543736 [bp] 1000 [Protein] 265aa [Translation ID] ENSP00000443409 [CCDS] - [UniProt] Q0VAP4 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-028 [Transcript ID] ENST00000564475 [bp] 732 [Protein] 240aa [Translation ID] ENSP00000454977 [CCDS] - [UniProt] H3BNS0 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-026 [Transcript ID] ENST00000567879 [bp] 713 [Protein] 214aa [Translation ID] ENSP00000457006 [CCDS] - [UniProt] H3BT40 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-027 [Transcript ID] ENST00000561722 [bp] 696 [Protein] 195aa [Translation ID] ENSP00000456608 [CCDS] - [UniProt] H3BSA3 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-030 [Transcript ID] ENST00000564870 [bp] 460 [Protein] 153aa [Translation ID] ENSP00000456481 [CCDS] - [UniProt] H3BS03 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-021 [Transcript ID] ENST00000567988 [bp] 915 [Protein] 109aa [Translation ID] ENSP00000454217 [CCDS] - [UniProt] H3BM41 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-010 [Transcript ID] ENST00000567943 [bp] 860 [Protein] 158aa [Translation ID] ENSP00000455941 [CCDS] - [UniProt] H3BQU1 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-012 [Transcript ID] ENST00000565582 [bp] 812 [Protein] 210aa [Translation ID] ENSP00000456722 [CCDS] - [UniProt] H3BSI9 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-022 [Transcript ID] ENST00000561660 [bp] 762 [Protein] 182aa [Translation ID] ENSP00000456588 [CCDS] - [UniProt] H3BS84 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-023 [Transcript ID] ENST00000568626 [bp] 727 [Protein] 168aa [Translation ID] ENSP00000455974 [CCDS] - [UniProt] H3BQX1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-019 [Transcript ID] ENST00000563510 [bp] 633 [Protein] 51aa [Translation ID] ENSP00000456993 [CCDS] - [UniProt] H3BT32 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-013 [Transcript ID] ENST00000567621 [bp] 618 [Protein] 125aa [Translation ID] ENSP00000456762 [CCDS] - [UniProt] H3BSL6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-020 [Transcript ID] ENST00000563318 [bp] 605 [Protein] 77aa [Translation ID] ENSP00000457970 [CCDS] - [UniProt] H3BV66 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-011 [Transcript ID] ENST00000563513 [bp] 571 [Protein] 114aa [Translation ID] ENSP00000455946 [CCDS] - [UniProt] H3BQU6 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-016 [Transcript ID] ENST00000567510 [bp] 461 [Protein] 101aa [Translation ID] ENSP00000455969 [CCDS] - [UniProt] H3BQW7 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-008 [Transcript ID] ENST00000567205 [bp] 413 [Protein] 63aa [Translation ID] ENSP00000457027 [CCDS] - [UniProt] H3BT53 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-007 [Transcript ID] ENST00000566409 [bp] 395 [Protein] 41aa [Translation ID] ENSP00000457647 [CCDS] - [UniProt] H3BUI1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-031 [Transcript ID] ENST00000567284 [bp] 479 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-005 [Transcript ID] ENST00000566889 [bp] 2201 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-009 [Transcript ID] ENST00000305699 [bp] 1430 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-024 [Transcript ID] ENST00000564969 [bp] 850 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-014 [Transcript ID] ENST00000566133 [bp] 761 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-029 [Transcript ID] ENST00000562424 [bp] 745 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-025 [Transcript ID] ENST00000568983 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-032 [Transcript ID] ENST00000567883 [bp] 650 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-017 [Transcript ID] ENST00000563767 [bp] 578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
31c3f670_t__FANCA_021__ENST00000567988___Biotype
|
[Name] FANCA-018 [Transcript ID] ENST00000561667 [bp] 528 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-021 (ENST00000567988)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89742902-89765004;t=ENST00000567988
|
5/1438042987135.9_20150728002307-00221-ip-10-236-191-2_423443904_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000279036 [bp] 2235 [Protein] 578aa [Translation ID] ENSP00000279036 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13353 [UniProt] Q969N2 [RefSeq] NM_015937 NP_057021 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Name]
|
PIGT-001
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000543458 [bp] 2000 [Protein] 522aa [Translation ID] ENSP00000441577 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54464 [UniProt] Q969N2 [RefSeq] NM_001184728 NP_001171657 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
PIGT-007
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000372689 [bp] 1971 [Protein] 511aa [Translation ID] ENSP00000361774 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54465 [UniProt] Q969N2 [RefSeq] NM_001184729 NP_001171658 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
PIGT-005
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000279035 [bp] 1694 [Protein] 476aa [Translation ID] ENSP00000279035 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54466 [UniProt] Q969N2 [RefSeq] NM_001184730 NP_001171659 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
PIGT-004
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000545755 [bp] 675 [Protein] 172aa [Translation ID] ENSP00000443963 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F6W983 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PIGT-008
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000432270 [bp] 326 [Protein] 109aa [Translation ID] ENSP00000408354 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C2Y2 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PIGT-002
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
aed7ef12_pt__PIGT_005__ENST00000372689___Name
|
[Transcript ID] ENST00000455050 [bp] 1807 [Protein] 123aa [Translation ID] ENSP00000407574 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] B7Z7C5 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
PIGT-006
|
[
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"1"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"7"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"5"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"4"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"8"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"2"
],
[
"P",
"I",
"G",
"T",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PIGT-005 (ENST00000372689)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000124155;r=20:45416137-45426241;t=ENST00000372689
|
5/1438042988718.8_20150728002308-00185-ip-10-236-191-2_430152116_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
ffb28cbd_t__PDPK1_012__ENST00000478708___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - External data - Transcript: PDPK1-012 (ENST00000478708)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000140992;r=16:2648248-2648639;t=ENST00000478708
|
26/1438042990900.28_20150728002310-00168-ip-10-236-191-2_423745471_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-005 [Transcript ID] ENST00000513407 [bp] 2276 [Protein] 164aa [Translation ID] ENSP00000475512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] NM_001285986 NP_001272915 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-002 [Transcript ID] ENST00000471529 [bp] 1723 [Protein] 164aa [Translation ID] ENSP00000425083 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-202 [Transcript ID] ENST00000620031 [bp] 1578 [Protein] 190aa [Translation ID] ENSP00000484778 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] NM_001173531 NM_001285987 NM_203289 NP_001167002 NP_001272916 NP_976034 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-001 [Transcript ID] ENST00000259915 [bp] 1420 [Protein] 360aa [Translation ID] ENSP00000259915 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34391 [UniProt] D2IYK3 Q01860 [RefSeq] NM_002701 NP_002692 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-007 [Transcript ID] ENST00000606567 [bp] 1236 [Protein] 190aa [Translation ID] ENSP00000475880 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-006 [Transcript ID] ENST00000512818 [bp] 1233 [Protein] 164aa [Translation ID] ENSP00000425479 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-004 [Transcript ID] ENST00000441888 [bp] 1055 [Protein] 164aa [Translation ID] ENSP00000389359 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-201 [Transcript ID] ENST00000619340 [bp] 1084 [Protein] 186aa [Translation ID] ENSP00000481679 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WYB7 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
a5b395d8_Gene__POU5F1__ENSG00000204531___Flags
|
[Name] POU5F1-003 [Transcript ID] ENST00000461401 [bp] 791 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: POU5F1 (ENSG00000204531)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000204531;r=6:31132119-31148508
|
26/1438042986148.56_20150728002306-00326-ip-10-236-191-2_434158128_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-001 [Transcript ID] ENSMUST00000055032 [bp] 7974 [Translation ID] ENSMUSP00000061095 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS30541 [UniProt] Q62240 [RefSeq] NM_011419 NP_035549 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Protein]
|
1548aa
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-004 [Transcript ID] ENSMUST00000189069 [bp] 2177 [Translation ID] ENSMUSP00000139636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8BQM3 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein]
|
476aa
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-002 [Transcript ID] ENSMUST00000186726 [bp] 5916 [Translation ID] ENSMUSP00000140462 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A087WR43 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
271aa
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-003 [Transcript ID] ENSMUST00000186696 [bp] 3708 [Translation ID] ENSMUSP00000140663 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q62240 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein]
|
691aa
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-005 [Transcript ID] ENSMUST00000188910 [bp] 4354 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
No protein
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-008 [Transcript ID] ENSMUST00000187296 [bp] 4037 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
No protein
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-009 [Transcript ID] ENSMUST00000189955 [bp] 2770 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Protein]
|
No protein
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-006 [Transcript ID] ENSMUST00000189626 [bp] 1821 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein]
|
No protein
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
bd80f3ae_ne__Kdm5d__ENSMUSG00000056673___Protein
|
[Name] Kdm5d-007 [Transcript ID] ENSMUST00000185542 [bp] 696 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein]
|
No protein
|
[
[
"1",
"5",
"4",
"8",
"a",
"a"
],
[
"4",
"7",
"6",
"a",
"a"
],
[
"2",
"7",
"1",
"a",
"a"
],
[
"6",
"9",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Protein
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
b2e72928_t__UCHL1_001__ENST00000284440___Flags
|
[Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: UCHL1-001 (ENST00000284440)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
|
26/1438042986148.56_20150728002306-00222-ip-10-236-191-2_424486382_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
|
26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
|
9c3212a2_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
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Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
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Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-006 (ENST00000474706)
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Biotype
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http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706
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26/1438042986148.56_20150728002306-00260-ip-10-236-191-2_431784195_0.json
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