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5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-202 [Transcript ID] ENST00000395611 [bp] 5844 [Protein] 427aa [Translation ID] ENSP00000378974 [CCDS] CCDS7223 [UniProt] A1L4K2 P45983 [RefSeq] NM_001278547 NP_001265476 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-006 [Transcript ID] ENST00000374189 [bp] 5796 [Protein] 427aa [Translation ID] ENSP00000363304 [CCDS] CCDS7224 [UniProt] P45983 [RefSeq] NM_139049 NP_620637 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-011 [Transcript ID] ENST00000374182 [bp] 5638 [Protein] 384aa [Translation ID] ENSP00000363297 [CCDS] CCDS7225 [UniProt] P45983 [RefSeq] NM_002750 NP_002741 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-012 [Transcript ID] ENST00000374179 [bp] 5637 [Protein] 384aa [Translation ID] ENSP00000363294 [CCDS] CCDS7226 [UniProt] P45983 [RefSeq] NM_139046 NP_620634 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-014 [Transcript ID] ENST00000374176 [bp] 5628 [Protein] 427aa [Translation ID] ENSP00000363291 [CCDS] CCDS7223 [UniProt] A1L4K2 P45983 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-201 [Transcript ID] ENST00000360332 [bp] 5438 [Protein] 308aa [Translation ID] ENSP00000353483 [CCDS] CCDS60527 [UniProt] P45983 [RefSeq] NM_001278548 NP_001265477 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-008 [Transcript ID] ENST00000432379 [bp] 907 [Protein] 142aa [Translation ID] ENSP00000387936 [CCDS] - [UniProt] C9J762 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-009 [Transcript ID] ENST00000426557 [bp] 860 [Protein] 142aa [Translation ID] ENSP00000397729 [CCDS] - [UniProt] C9J762 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-013 [Transcript ID] ENST00000374174 [bp] 739 [Protein] 218aa [Translation ID] ENSP00000363289 [CCDS] - [UniProt] A6NF29 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-004 [Transcript ID] ENST00000429041 [bp] 603 [Protein] 97aa [Translation ID] ENSP00000393223 [CCDS] - [UniProt] C9JWQ4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-002 [Transcript ID] ENST00000459755 [bp] 2372 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-010 [Transcript ID] ENST00000476134 [bp] 732 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-005 [Transcript ID] ENST00000469879 [bp] 537 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-007 [Transcript ID] ENST00000482840 [bp] 450 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-001 [Transcript ID] ENST00000469110 [bp] 3595 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
5af2910b_t__MAPK8_013__ENST00000374174___Biotype
|
[Name] MAPK8-003 [Transcript ID] ENST00000471272 [bp] 656 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: MAPK8-013 (ENST00000374174)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000107643;r=10:48401661-48425831;t=ENST00000374174
|
26/1438042990900.28_20150728002310-00137-ip-10-236-191-2_411731036_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-201 [Transcript ID] ENST00000419022 [bp] 6922 [Protein] 436aa [Translation ID] ENSP00000404100 [CCDS] CCDS31452 [UniProt] F1T0F8 P26367 [RefSeq] NM_001258462 NP_001245391 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-202 [Transcript ID] ENST00000606377 [bp] 6860 [Protein] 436aa [Translation ID] ENSP00000480026 [CCDS] CCDS31452 [UniProt] F1T0F8 P26367 [RefSeq] NM_001258463 NP_001245392 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-009 [Transcript ID] ENST00000379129 [bp] 2616 [Protein] 436aa [Translation ID] ENSP00000368424 [CCDS] CCDS31452 [UniProt] F1T0F8 P26367 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-011 [Transcript ID] ENST00000379107 [bp] 2591 [Protein] 436aa [Translation ID] ENSP00000368401 [CCDS] CCDS31452 [UniProt] F1T0F8 P26367 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-008 [Transcript ID] ENST00000379132 [bp] 2574 [Protein] 422aa [Translation ID] ENSP00000368427 [CCDS] CCDS31451 [UniProt] P26367 Q66SS1 [RefSeq] NM_001127612 NP_001121084 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-003 [Transcript ID] ENST00000379123 [bp] 2160 [Protein] 422aa [Translation ID] ENSP00000368418 [CCDS] CCDS31451 [UniProt] P26367 Q66SS1 [RefSeq] NM_000280 NM_001258464 NP_000271 NP_001245393 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-001 [Transcript ID] ENST00000379115 [bp] 1763 [Protein] 436aa [Translation ID] ENSP00000368410 [CCDS] CCDS31452 [UniProt] F1T0F8 P26367 [RefSeq] NM_001604 NP_001595 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-002 [Transcript ID] ENST00000241001 [bp] 1631 [Protein] 422aa [Translation ID] ENSP00000241001 [CCDS] CCDS31451 [UniProt] P26367 Q66SS1 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-005 [Transcript ID] ENST00000379111 [bp] 1627 [Protein] 422aa [Translation ID] ENSP00000368406 [CCDS] CCDS31451 [UniProt] P26367 Q66SS1 [RefSeq] NM_001258465 NP_001245394 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-004 [Transcript ID] ENST00000379109 [bp] 2157 [Protein] 422aa [Translation ID] ENSP00000368403 [CCDS] - [UniProt] P26367 Q66SS1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-020 [Transcript ID] ENST00000525535 [bp] 677 [Protein] 2aa [Translation ID] ENSP00000436365 [CCDS] - [UniProt] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-021 [Transcript ID] ENST00000524853 [bp] 574 [Protein] 58aa [Translation ID] ENSP00000431585 [CCDS] - [UniProt] E9PKM0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-012 [Transcript ID] ENST00000423822 [bp] 567 [Protein] 62aa [Translation ID] ENSP00000388132 [CCDS] - [UniProt] B1B1I9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-016 [Transcript ID] ENST00000455099 [bp] 497 [Protein] 124aa [Translation ID] ENSP00000397384 [CCDS] - [UniProt] B1B1J0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-013 [Transcript ID] ENST00000438681 [bp] 455 [Protein] 39aa [Translation ID] ENSP00000404356 [CCDS] - [UniProt] B1B1I8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-029 [Transcript ID] ENST00000533156 [bp] 847 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-014 [Transcript ID] ENST00000471303 [bp] 782 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-027 [Transcript ID] ENST00000531910 [bp] 643 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-015 [Transcript ID] ENST00000481563 [bp] 613 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-028 [Transcript ID] ENST00000530373 [bp] 572 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-025 [Transcript ID] ENST00000530714 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-024 [Transcript ID] ENST00000534353 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-019 [Transcript ID] ENST00000533333 [bp] 6173 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-006 [Transcript ID] ENST00000470027 [bp] 2842 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-007 [Transcript ID] ENST00000494377 [bp] 2460 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-010 [Transcript ID] ENST00000464174 [bp] 979 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-017 [Transcript ID] ENST00000474783 [bp] 702 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-030 [Transcript ID] ENST00000532916 [bp] 627 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-026 [Transcript ID] ENST00000534390 [bp] 578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-023 [Transcript ID] ENST00000532175 [bp] 524 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
ea38fc15_pt__PAX6_202__ENST00000606377___Biotype
|
[Name] PAX6-022 [Transcript ID] ENST00000527769 [bp] 487 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
22b5cb24_t__FNIP1_004__ENST00000307954___RefSeq
|
[Name] FNIP1-005 [Transcript ID] ENST00000307968 [bp] 6388 [Protein] 1138aa [Translation ID] ENSP00000309266 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34226 [UniProt] Q8TF40 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [RefSeq]
|
NM_001008738 NP_001008738
|
[
[
"N",
"M",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
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"N",
"P",
"_",
"0",
"0",
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],
[
"N",
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"_",
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"N",
"P",
"_",
"5",
"8",
"8",
"6",
"1",
"3"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FNIP1-004 (ENST00000307954)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000217128;r=5:131641714-131796950;t=ENST00000307954
|
26/1438042990900.28_20150728002310-00053-ip-10-236-191-2_428138362_0.json
|
22b5cb24_t__FNIP1_004__ENST00000307954___RefSeq
|
[Name] FNIP1-003 [Transcript ID] ENST00000510461 [bp] 3845 [Protein] 1166aa [Translation ID] ENSP00000421985 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34227 [UniProt] Q8TF40 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [RefSeq]
|
NM_133372 NP_588613
|
[
[
"N",
"M",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8",
" ",
"N",
"P",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8"
],
[
"N",
"M",
"_",
"1",
"3",
"3",
"3",
"7",
"2",
" ",
"N",
"P",
"_",
"5",
"8",
"8",
"6",
"1",
"3"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FNIP1-004 (ENST00000307954)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000217128;r=5:131641714-131796950;t=ENST00000307954
|
26/1438042990900.28_20150728002310-00053-ip-10-236-191-2_428138362_0.json
|
22b5cb24_t__FNIP1_004__ENST00000307954___RefSeq
|
[Name] FNIP1-201 [Transcript ID] ENST00000615660 [bp] 6589 [Protein] 918aa [Translation ID] ENSP00000480650 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WX11 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq]
|
-
|
[
[
"N",
"M",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8",
" ",
"N",
"P",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8"
],
[
"N",
"M",
"_",
"1",
"3",
"3",
"3",
"7",
"2",
" ",
"N",
"P",
"_",
"5",
"8",
"8",
"6",
"1",
"3"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FNIP1-004 (ENST00000307954)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000217128;r=5:131641714-131796950;t=ENST00000307954
|
26/1438042990900.28_20150728002310-00053-ip-10-236-191-2_428138362_0.json
|
22b5cb24_t__FNIP1_004__ENST00000307954___RefSeq
|
[Name] FNIP1-004 [Transcript ID] ENST00000307954 [bp] 6366 [Protein] 1121aa [Translation ID] ENSP00000310453 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KNG8 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq]
|
-
|
[
[
"N",
"M",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8",
" ",
"N",
"P",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8"
],
[
"N",
"M",
"_",
"1",
"3",
"3",
"3",
"7",
"2",
" ",
"N",
"P",
"_",
"5",
"8",
"8",
"6",
"1",
"3"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FNIP1-004 (ENST00000307954)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000217128;r=5:131641714-131796950;t=ENST00000307954
|
26/1438042990900.28_20150728002310-00053-ip-10-236-191-2_428138362_0.json
|
22b5cb24_t__FNIP1_004__ENST00000307954___RefSeq
|
[Name] FNIP1-001 [Transcript ID] ENST00000511848 [bp] 1720 [Protein] 508aa [Translation ID] ENSP00000425619 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8TF40 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq]
|
-
|
[
[
"N",
"M",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8",
" ",
"N",
"P",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8"
],
[
"N",
"M",
"_",
"1",
"3",
"3",
"3",
"7",
"2",
" ",
"N",
"P",
"_",
"5",
"8",
"8",
"6",
"1",
"3"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FNIP1-004 (ENST00000307954)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000217128;r=5:131641714-131796950;t=ENST00000307954
|
26/1438042990900.28_20150728002310-00053-ip-10-236-191-2_428138362_0.json
|
22b5cb24_t__FNIP1_004__ENST00000307954___RefSeq
|
[Name] FNIP1-006 [Transcript ID] ENST00000623690 [bp] 1373 [Protein] No protein [Translation ID] - [Biotype] TEC [CCDS] - [UniProt] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [RefSeq]
|
-
|
[
[
"N",
"M",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8",
" ",
"N",
"P",
"_",
"0",
"0",
"1",
"0",
"0",
"8",
"7",
"3",
"8"
],
[
"N",
"M",
"_",
"1",
"3",
"3",
"3",
"7",
"2",
" ",
"N",
"P",
"_",
"5",
"8",
"8",
"6",
"1",
"3"
],
[
"-"
]
] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FNIP1-004 (ENST00000307954)
|
RefSeq
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000217128;r=5:131641714-131796950;t=ENST00000307954
|
26/1438042990900.28_20150728002310-00053-ip-10-236-191-2_428138362_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-005 [Transcript ID] ENST00000452699 [bp] 3981 [Protein] 1175aa [Translation ID] ENSP00000413307 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44073 [UniProt] Q9NQ11 [RefSeq] NM_001141973 NP_001135445 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-001 [Transcript ID] ENST00000326735 [bp] 3840 [Protein] 1180aa [Translation ID] ENSP00000327214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS175 [UniProt] Q9NQ11 [RefSeq] NM_022089 NP_071372 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-002 [Transcript ID] ENST00000341676 [bp] 3681 [Protein] 1158aa [Translation ID] ENSP00000341115 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44072 [UniProt] Q9NQ11 [RefSeq] NM_001141974 NP_001135446 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-201 [Transcript ID] ENST00000617114 [bp] 1723 [Protein] 228aa [Translation ID] ENSP00000478781 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUM9 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-007 [Transcript ID] ENST00000502418 [bp] 1201 [Protein] 398aa [Translation ID] ENSP00000423065 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y953 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-009 [Transcript ID] ENST00000510069 [bp] 962 [Protein] 321aa [Translation ID] ENSP00000424313 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K0 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-014 [Transcript ID] ENST00000503552 [bp] 774 [Protein] 258aa [Translation ID] ENSP00000421126 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8I1 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-012 [Transcript ID] ENST00000506174 [bp] 573 [Protein] 191aa [Translation ID] ENSP00000424393 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K4 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-010 [Transcript ID] ENST00000509619 [bp] 570 [Protein] 191aa [Translation ID] ENSP00000422668 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8Z6 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-011 [Transcript ID] ENST00000511957 [bp] 569 [Protein] 190aa [Translation ID] ENSP00000427241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAI7 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-008 [Transcript ID] ENST00000508222 [bp] 562 [Protein] 188aa [Translation ID] ENSP00000422227 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8V5 [RefSeq] - [Flags]
|
5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-004 [Transcript ID] ENST00000466561 [bp] 1851 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-003 [Transcript ID] ENST00000463860 [bp] 1639 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-006 [Transcript ID] ENST00000502860 [bp] 687 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
47d609d2__ATP13A2_010__ENST00000509619___Flags
|
[Name] ATP13A2-013 [Transcript ID] ENST00000509392 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ATP13A2-010 (ENST00000509619)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000159363;r=1:17326764-17331567;t=ENST00000509619
|
26/1438042990900.28_20150728002310-00010-ip-10-236-191-2_424472371_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
3568cc19_t__PDPK1_006__ENST00000474706___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000272371 [bp] 7156 [Protein] 1997aa [Translation ID] ENSP00000272371 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1725 [UniProt] Q9HC10 [RefSeq] NM_194248 NP_919224 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Name]
|
OTOF-001
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000403946 [bp] 6937 [Protein] 1997aa [Translation ID] ENSP00000385255 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74497 [UniProt] Q9HC10 [RefSeq] NM_001287489 NP_001274418 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Name]
|
OTOF-005
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000402415 [bp] 5108 [Protein] 1307aa [Translation ID] ENSP00000383906 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46241 [UniProt] Q9HC10 [RefSeq] NM_194322 NP_919303 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
OTOF-004
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000338581 [bp] 4954 [Protein] 1230aa [Translation ID] ENSP00000345137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1726 [UniProt] Q9HC10 [RefSeq] NM_004802 NP_004793 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
OTOF-002
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000339598 [bp] 4756 [Protein] 1230aa [Translation ID] ENSP00000344521 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1724 [UniProt] Q9HC10 [RefSeq] NM_194323 NP_919304 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
OTOF-003
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000426958 [bp] 557 [Protein] 141aa [Translation ID] ENSP00000389917 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7BZJ5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
OTOF-007
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
761e7284___Gene__OTOF__ENSG00000115155___Name
|
[Transcript ID] ENST00000464574 [bp] 918 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
OTOF-006
|
[
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"1"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"5"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"4"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"2"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"3"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"7"
],
[
"O",
"T",
"O",
"F",
"-",
"0",
"0",
"6"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-001 [Transcript ID] ENST00000324856 [bp] 8577 [Protein] 2285aa [Translation ID] ENSP00000320485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS285 [UniProt] O14497 [RefSeq] NM_006015 NP_006006 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-002 [Transcript ID] ENST00000457599 [bp] 6268 [Protein] 2068aa [Translation ID] ENSP00000387636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44091 [UniProt] O14497 [RefSeq] NM_139135 NP_624361 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-003 [Transcript ID] ENST00000374152 [bp] 5992 [Protein] 1902aa [Translation ID] ENSP00000363267 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] O14497 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-009 [Transcript ID] ENST00000430799 [bp] 3978 [Protein] 1182aa [Translation ID] ENSP00000390317 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y488 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-201 [Transcript ID] ENST00000615191 [bp] 3804 [Protein] 1141aa [Translation ID] ENSP00000478955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUV6 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-007 [Transcript ID] ENST00000524572 [bp] 546 [Protein] 123aa [Translation ID] ENSP00000432473 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PQW6 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
|
9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
|
[Name] ARID1A-004 [Transcript ID] ENST00000466382 [bp] 2696 [Protein] 144aa [Translation ID] ENSP00000432368 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YCU6 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
|
26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
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9bc19f67_Gene__ARID1A__ENSG00000117713___Flags
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[Name] ARID1A-006 [Transcript ID] ENST00000532781 [bp] 2583 [Protein] 188aa [Translation ID] ENSP00000436692 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YEW5 [RefSeq] - [Flags]
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5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
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[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ARID1A (ENSG00000117713)
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Flags
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http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000117713;r=1:26696033-26782104
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26/1438042986148.56_20150728002306-00137-ip-10-236-191-2_426393172_0.json
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