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f2e525fd_pt__PAX6_202__ENST00000606377___Flags
|
[Name] PAX6-026 [Transcript ID] ENST00000534390 [bp] 578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
f2e525fd_pt__PAX6_202__ENST00000606377___Flags
|
[Name] PAX6-023 [Transcript ID] ENST00000532175 [bp] 524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
f2e525fd_pt__PAX6_202__ENST00000606377___Flags
|
[Name] PAX6-022 [Transcript ID] ENST00000527769 [bp] 487 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PAX6-202 (ENST00000606377)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000007372;r=11:31794780-31806921;t=ENST00000606377
|
26/1438042986148.56_20150728002306-00072-ip-10-236-191-2_425203087_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-006 [Transcript ID] ENST00000370068 [bp] 4034 [Protein] 539aa [Translation ID] ENSP00000359085 [CCDS] CCDS44180 [UniProt] Q9Y2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-202 [Transcript ID] ENST00000370073 [bp] 3347 [Protein] 539aa [Translation ID] ENSP00000359090 [CCDS] CCDS44180 [UniProt] Q9Y2I2 [RefSeq] NM_001113226 NP_001106697 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-201 [Transcript ID] ENST00000370071 [bp] 3149 [Protein] 480aa [Translation ID] ENSP00000359088 [CCDS] CCDS44179 [UniProt] Q9Y2I2 X5DNW2 [RefSeq] NM_001113228 NP_001106699 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-001 [Transcript ID] ENST00000370074 [bp] 3048 [Protein] 438aa [Translation ID] ENSP00000359091 [CCDS] CCDS30785 [UniProt] Q9Y2I2 [RefSeq] NM_014917 NP_055732 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-005 [Transcript ID] ENST00000370066 [bp] 1443 [Protein] 480aa [Translation ID] ENSP00000359083 [CCDS] CCDS44179 [UniProt] Q9Y2I2 X5DNW2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-004 [Transcript ID] ENST00000370067 [bp] 4628 [Protein] 460aa [Translation ID] ENSP00000359084 [CCDS] - [UniProt] Q9Y2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-007 [Transcript ID] ENST00000370065 [bp] 1485 [Protein] 494aa [Translation ID] ENSP00000359082 [CCDS] - [UniProt] Q9Y2I2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-009 [Transcript ID] ENST00000477948 [bp] 1066 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-008 [Transcript ID] ENST00000462149 [bp] 830 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-003 [Transcript ID] ENST00000370076 [bp] 574 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
1acd3e50__Gene__NTNG1__ENSG00000162631___Biotype
|
[Name] NTNG1-002 [Transcript ID] ENST00000294649 [bp] 4703 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NTNG1 (ENSG00000162631)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000162631;r=1:107140007-107483458
|
26/1438042989826.86_20150728002309-00234-ip-10-236-191-2_432664665_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-201 [Transcript ID] ENST00000621899 [bp] 2272 [Protein] 108aa [Translation ID] ENSP00000478948 [CCDS] CCDS47671 [UniProt] A0A024QYT8 Q9H7X7 [RefSeq] NM_001287526 NP_001274455 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-010 [Transcript ID] ENST00000517481 [bp] 1657 [Protein] 108aa [Translation ID] ENSP00000429202 [CCDS] CCDS47671 [UniProt] A0A024QYT8 Q9H7X7 [RefSeq] NM_001130821 NM_001287525 NP_001124293 NP_001274454 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-001 [Transcript ID] ENST00000315322 [bp] 1130 [Protein] 185aa [Translation ID] ENSP00000320359 [CCDS] CCDS5719 [UniProt] A0A024QYV3 Q9H7X7 [RefSeq] NM_022777 NP_073614 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-007 [Transcript ID] ENST00000498704 [bp] 917 [Protein] 108aa [Translation ID] ENSP00000429648 [CCDS] CCDS47671 [UniProt] A0A024QYT8 Q9H7X7 [RefSeq] NM_001130822 NP_001124294 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-004 [Transcript ID] ENST00000437644 [bp] 875 [Protein] 155aa [Translation ID] ENSP00000390770 [CCDS] CCDS47670 [UniProt] Q9H7X7 [RefSeq] NM_001130820 NP_001124292 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-009 [Transcript ID] ENST00000422177 [bp] 1785 [Protein] 185aa [Translation ID] ENSP00000392087 [CCDS] CCDS5719 [UniProt] A0A024QYV3 Q9H7X7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-006 [Transcript ID] ENST00000430911 [bp] 933 [Protein] 37aa [Translation ID] ENSP00000389170 [CCDS] - [UniProt] F8WDY0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-005 [Transcript ID] ENST00000495166 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-002 [Transcript ID] ENST00000440362 [bp] 1727 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-003 [Transcript ID] ENST00000468833 [bp] 1170 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
66ebce79_t__IFT22_004__ENST00000437644___Biotype
|
[Name] IFT22-008 [Transcript ID] ENST00000485695 [bp] 923 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: IFT22-004 (ENST00000437644)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000128581;r=7:101314795-101321777;t=ENST00000437644
|
26/1438042986148.56_20150728002306-00086-ip-10-236-191-2_439047528_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-001 [Transcript ID] ENSMUST00000055032 [bp] 7974 [Protein] 1548aa [Translation ID] ENSMUSP00000061095 [CCDS] CCDS30541 [UniProt] Q62240 [RefSeq] NM_011419 NP_035549 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-004 [Transcript ID] ENSMUST00000189069 [bp] 2177 [Protein] 476aa [Translation ID] ENSMUSP00000139636 [CCDS] - [UniProt] Q8BQM3 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-002 [Transcript ID] ENSMUST00000186726 [bp] 5916 [Protein] 271aa [Translation ID] ENSMUSP00000140462 [CCDS] - [UniProt] A0A087WR43 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-003 [Transcript ID] ENSMUST00000186696 [bp] 3708 [Protein] 691aa [Translation ID] ENSMUSP00000140663 [CCDS] - [UniProt] Q62240 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-005 [Transcript ID] ENSMUST00000188910 [bp] 4354 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-008 [Transcript ID] ENSMUST00000187296 [bp] 4037 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-009 [Transcript ID] ENSMUST00000189955 [bp] 2770 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-006 [Transcript ID] ENSMUST00000189626 [bp] 1821 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
e6831c91_ne__Kdm5d__ENSMUSG00000056673___Biotype
|
[Name] Kdm5d-007 [Transcript ID] ENSMUST00000185542 [bp] 696 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Mus musculus - Gene gain/loss tree - Gene: Kdm5d (ENSMUSG00000056673)
|
Biotype
|
http://www.ensembl.org/Mus_musculus/Gene/SpeciesTree?g=ENSMUSG00000056673;r=Y:897788-943811;t=ENSMUST00000055032
|
26/1438042986148.56_20150728002306-00122-ip-10-236-191-2_433591965_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-001 [Transcript ID] ENST00000283254 [bp] 9091 [Protein] 2000aa [Translation ID] ENSP00000283254 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33312 [UniProt] Q9NY46 [RefSeq] NM_001081676 NM_006922 NP_001075145 NP_008853 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-002 [Transcript ID] ENST00000409101 [bp] 6599 [Protein] 1951aa [Translation ID] ENSP00000386726 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46440 [UniProt] Q9NY46 [RefSeq] NM_001081677 NP_001075146 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-201 [Transcript ID] ENST00000360093 [bp] 9123 [Protein] 2000aa [Translation ID] ENSP00000353206 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NY46 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-004 [Transcript ID] ENST00000440431 [bp] 4146 [Protein] 1364aa [Translation ID] ENSP00000403348 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EUE6 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-003 [Transcript ID] ENST00000453007 [bp] 1216 [Protein] 200aa [Translation ID] ENSP00000391569 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JBM7 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-007 [Transcript ID] ENST00000465043 [bp] 531 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-008 [Transcript ID] ENST00000484898 [bp] 262 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
18ba78bf__Gene__SCN3A__ENSG00000153253___Flags
|
[Name] SCN3A-006 [Transcript ID] ENST00000471697 [bp] 555 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SCN3A (ENSG00000153253)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000153253;r=2:165087522-165204067
|
26/1438042990900.28_20150728002310-00193-ip-10-236-191-2_414019942_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-001 [Transcript ID] ENST00000272371 [bp] 7156 [Translation ID] ENSP00000272371 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1725 [UniProt] Q9HC10 [RefSeq] NM_194248 NP_919224 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Protein]
|
1997aa
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-005 [Transcript ID] ENST00000403946 [bp] 6937 [Translation ID] ENSP00000385255 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74497 [UniProt] Q9HC10 [RefSeq] NM_001287489 NP_001274418 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Protein]
|
1997aa
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-004 [Transcript ID] ENST00000402415 [bp] 5108 [Translation ID] ENSP00000383906 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46241 [UniProt] Q9HC10 [RefSeq] NM_194322 NP_919303 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein]
|
1307aa
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-002 [Transcript ID] ENST00000338581 [bp] 4954 [Translation ID] ENSP00000345137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1726 [UniProt] Q9HC10 [RefSeq] NM_004802 NP_004793 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein]
|
1230aa
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-003 [Transcript ID] ENST00000339598 [bp] 4756 [Translation ID] ENSP00000344521 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS1724 [UniProt] Q9HC10 [RefSeq] NM_194323 NP_919304 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein]
|
1230aa
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-007 [Transcript ID] ENST00000426958 [bp] 557 [Translation ID] ENSP00000389917 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7BZJ5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein]
|
141aa
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
c1e2ce1f___Gene__OTOF__ENSG00000115155___Protein
|
[Name] OTOF-006 [Transcript ID] ENST00000464574 [bp] 918 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein]
|
No protein
|
[
[
"1",
"9",
"9",
"7",
"a",
"a"
],
[
"1",
"3",
"0",
"7",
"a",
"a"
],
[
"1",
"2",
"3",
"0",
"a",
"a"
],
[
"1",
"4",
"1",
"a",
"a"
],
[
"N",
"o",
" ",
"p",
"r",
"o",
"t",
"e",
"i",
"n"
]
] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: OTOF (ENSG00000115155)
|
Protein
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000115155;r=2:26457203-26558698
|
26/1438042986148.56_20150728002306-00251-ip-10-236-191-2_435190649_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
5ff94f75__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000116288;r=1:8014351-8045565
|
26/1438042990900.28_20150728002310-00293-ip-10-236-191-2_427963858_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
7f652bc8_t__PDPK1_006__ENST00000474706___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PDPK1-006 (ENST00000474706)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000140992;r=16:2588022-2612228;t=ENST00000474706
|
26/1438042990900.28_20150728002310-00086-ip-10-236-191-2_428463203_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-001 [Transcript ID] ENST00000432829 [bp] 7452 [Protein] 2099aa [Translation ID] ENSP00000394888 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6440 [UniProt] Q8NF50 [RefSeq] NM_203447 NP_982272 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-201 [Transcript ID] ENST00000453981 [bp] 7237 [Protein] 2031aa [Translation ID] ENSP00000408464 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55283 [UniProt] Q8NF50 [RefSeq] NM_001193536 NP_001180465 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-012 [Transcript ID] ENST00000469391 [bp] 6386 [Protein] 1999aa [Translation ID] ENSP00000419438 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55284 [UniProt] Q8NF50 [RefSeq] NM_001190458 NP_001177387 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-005 [Transcript ID] ENST00000382329 [bp] 6124 [Protein] 1566aa [Translation ID] ENSP00000371766 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A2A369 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-009 [Transcript ID] ENST00000382331 [bp] 1922 [Protein] 439aa [Translation ID] ENSP00000371768 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A2A370 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-013 [Transcript ID] ENST00000479404 [bp] 595 [Protein] 66aa [Translation ID] ENSP00000417082 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J613 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-014 [Transcript ID] ENST00000487230 [bp] 537 [Protein] 107aa [Translation ID] ENSP00000418318 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7A3 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-004 [Transcript ID] ENST00000483757 [bp] 4788 [Protein] 502aa [Translation ID] ENSP00000417691 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PDJ4 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-018 [Transcript ID] ENST00000524396 [bp] 2206 [Protein] 50aa [Translation ID] ENSP00000436628 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PHZ4 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-008 [Transcript ID] ENST00000469197 [bp] 741 [Protein] 66aa [Translation ID] ENSP00000418587 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WC95 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-015 [Transcript ID] ENST00000493666 [bp] 535 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-016 [Transcript ID] ENST00000462618 [bp] 428 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-007 [Transcript ID] ENST00000474772 [bp] 384 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-006 [Transcript ID] ENST00000495184 [bp] 9277 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-010 [Transcript ID] ENST00000454469 [bp] 2087 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-002 [Transcript ID] ENST00000382341 [bp] 1873 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
2bd78315_t__DOCK8_014__ENST00000487230___Flags
|
[Name] DOCK8-011 [Transcript ID] ENST00000478380 [bp] 1395 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DOCK8-014 (ENST00000487230)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000107099;r=9:273050-304703;t=ENST00000487230
|
26/1438042990900.28_20150728002310-00157-ip-10-236-191-2_414485329_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-001 [Transcript ID] ENST00000393695 [bp] 7343 [Protein] 2115aa [Translation ID] ENSP00000377298 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31633 [UniProt] Q14980 [RefSeq] NM_006185 NP_006176 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-002 [Transcript ID] ENST00000358965 [bp] 7227 [Protein] 2101aa [Translation ID] ENSP00000351851 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS66156 [UniProt] A0A024R5M9 Q14980 [RefSeq] NM_001286561 NP_001273490 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-203 [Transcript ID] ENST00000620566 [bp] 7012 [Protein] 2101aa [Translation ID] ENSP00000478624 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS66156 [UniProt] A0A024R5M9 Q14980 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-202 [Transcript ID] ENST00000616538 [bp] 6998 [Protein] 2099aa [Translation ID] ENSP00000481541 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WY61 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-201 [Transcript ID] ENST00000613205 [bp] 3940 [Protein] 979aa [Translation ID] ENSP00000480172 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q14980 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-006 [Transcript ID] ENST00000351960 [bp] 3775 [Protein] 979aa [Translation ID] ENSP00000260051 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q14980 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
87f8c0f4_t__NUMA1_012__ENST00000541584___Flags
|
[Name] NUMA1-012 [Transcript ID] ENST00000541584 [bp] 3557 [Protein] 964aa [Translation ID] ENSP00000440954 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YFY6 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: NUMA1-012 (ENST00000541584)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000137497;r=11:72002864-72014036;t=ENST00000541584
|
26/1438042986148.56_20150728002306-00107-ip-10-236-191-2_430773584_0.json
|
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